Query psy442
Match_columns 66
No_of_seqs 116 out of 1036
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:38:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880|consensus 100.0 6.4E-30 1.4E-34 159.8 6.7 66 1-66 137-203 (217)
2 KOG0546|consensus 100.0 6.3E-30 1.4E-34 170.4 6.7 66 1-66 113-179 (372)
3 PTZ00221 cyclophilin; Provisio 100.0 3.6E-28 7.8E-33 156.7 8.1 66 1-66 154-220 (249)
4 PLN03149 peptidyl-prolyl isome 99.9 2.4E-27 5.3E-32 147.5 7.8 65 1-65 120-186 (186)
5 PTZ00060 cyclophilin; Provisio 99.9 4.2E-27 9E-32 146.0 7.9 66 1-66 118-183 (183)
6 KOG0879|consensus 99.9 2.7E-27 6E-32 141.8 6.3 65 1-65 112-177 (177)
7 cd01926 cyclophilin_ABH_like c 99.9 5.2E-27 1.1E-31 143.2 7.1 63 1-63 102-164 (164)
8 cd01921 cyclophilin_RRM cyclop 99.9 2.8E-26 6.1E-31 140.3 7.8 66 1-66 93-160 (166)
9 cd01923 cyclophilin_RING cyclo 99.9 3E-26 6.4E-31 139.5 7.7 65 1-65 88-153 (159)
10 KOG0881|consensus 99.9 1.4E-26 3.1E-31 137.4 4.7 64 1-64 98-162 (164)
11 cd01928 Cyclophilin_PPIL3_like 99.9 1.4E-25 3.1E-30 135.8 7.4 63 1-63 89-152 (153)
12 cd01927 cyclophilin_WD40 cyclo 99.9 1.4E-25 3.1E-30 135.1 7.3 61 1-61 86-147 (148)
13 cd01922 cyclophilin_SpCYP2_lik 99.9 2.1E-25 4.5E-30 134.3 7.0 61 1-61 86-146 (146)
14 KOG0111|consensus 99.9 4E-25 8.7E-30 141.1 6.9 66 1-66 233-298 (298)
15 COG0652 PpiB Peptidyl-prolyl c 99.9 1.7E-24 3.7E-29 132.1 7.4 65 1-65 87-157 (158)
16 KOG0882|consensus 99.9 1.1E-24 2.4E-29 149.0 6.8 63 1-63 493-556 (558)
17 PRK10903 peptidyl-prolyl cis-t 99.9 4.3E-24 9.3E-29 133.3 7.9 66 1-66 114-190 (190)
18 KOG0884|consensus 99.9 1.9E-24 4E-29 127.9 5.8 62 1-62 89-152 (161)
19 PRK10791 peptidyl-prolyl cis-t 99.9 2.7E-23 5.9E-28 127.2 7.5 65 1-65 85-163 (164)
20 PF00160 Pro_isomerase: Cyclop 99.9 2.3E-23 5E-28 125.0 5.9 63 1-64 91-155 (155)
21 cd01925 cyclophilin_CeCYP16-li 99.9 1E-22 2.2E-27 125.2 8.1 66 1-66 94-161 (171)
22 KOG0883|consensus 99.9 7.9E-23 1.7E-27 138.3 6.9 64 1-64 366-430 (518)
23 cd01920 cyclophilin_EcCYP_like 99.9 2.1E-22 4.5E-27 122.1 6.9 62 1-62 83-155 (155)
24 cd00317 cyclophilin cyclophili 99.9 1.1E-21 2.5E-26 116.8 6.8 61 1-61 85-146 (146)
25 KOG0865|consensus 99.9 8.1E-22 1.8E-26 121.2 4.7 65 1-65 103-167 (167)
26 cd01924 cyclophilin_TLP40_like 99.8 3.1E-19 6.6E-24 110.4 6.5 45 1-45 111-164 (176)
27 KOG0415|consensus 99.8 3.8E-19 8.3E-24 119.6 5.8 65 1-65 96-162 (479)
28 KOG0885|consensus 99.6 9.4E-16 2E-20 103.5 4.9 65 1-65 101-167 (439)
29 KOG0882|consensus 90.2 0.42 9.1E-06 34.3 3.3 55 8-62 204-259 (558)
30 TIGR03268 methan_mark_3 putati 79.4 0.59 1.3E-05 33.5 -0.0 33 11-44 270-302 (503)
31 PRK00969 hypothetical protein; 77.7 1.5 3.2E-05 31.7 1.5 33 10-43 272-304 (508)
32 PF08415 NRPS: Nonribosomal pe 65.7 9.1 0.0002 19.2 2.5 26 34-60 4-29 (58)
33 PF04126 Cyclophil_like: Cyclo 63.3 7.8 0.00017 22.5 2.2 34 11-44 72-112 (120)
34 COG4070 Predicted peptidyl-pro 59.4 1.8 3.9E-05 30.7 -1.1 33 11-44 272-304 (512)
35 PRK00969 hypothetical protein; 56.7 15 0.00033 26.7 3.0 18 28-45 150-167 (508)
36 TIGR03268 methan_mark_3 putati 55.9 21 0.00045 26.0 3.6 40 6-45 122-164 (503)
37 PF01949 DUF99: Protein of unk 45.4 13 0.00028 23.5 1.2 41 18-60 29-70 (187)
38 PRK00766 hypothetical protein; 44.4 27 0.00058 22.2 2.5 40 18-59 35-76 (194)
39 PF12903 DUF3830: Protein of u 41.0 36 0.00078 20.8 2.6 17 28-44 113-129 (147)
40 PF10411 DsbC_N: Disulfide bon 31.5 31 0.00068 17.2 1.1 13 23-35 40-52 (57)
41 PF06651 DUF1163: Protein of u 30.7 26 0.00057 18.8 0.8 11 8-18 20-30 (70)
42 cd03575 NTR_WFIKKN NTR domain, 26.8 23 0.0005 20.6 0.1 24 18-41 61-87 (109)
43 KOG1816|consensus 25.5 68 0.0015 21.9 2.2 40 27-66 33-78 (308)
44 COG0026 PurK Phosphoribosylami 24.7 2.5E+02 0.0053 19.9 4.8 50 10-59 247-306 (375)
45 PF12396 DUF3659: Protein of u 24.4 64 0.0014 16.8 1.6 21 23-45 16-36 (64)
46 COG2164 Uncharacterized conser 21.4 13 0.00027 21.8 -1.6 17 28-44 100-116 (126)
47 COG3895 Predicted periplasmic 21.1 68 0.0015 18.8 1.4 19 22-40 59-79 (112)
48 COG4029 Uncharacterized protei 20.6 1E+02 0.0022 18.6 2.1 21 23-43 33-54 (142)
49 KOG3424|consensus 20.3 89 0.0019 18.7 1.8 22 24-45 66-87 (132)
No 1
>KOG0880|consensus
Probab=99.96 E-value=6.4e-30 Score=159.82 Aligned_cols=66 Identities=62% Similarity=1.060 Sum_probs=64.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||.|||+||||||||+.+.+|||++|+|||||++|||++.+|+.+++ ..++|.++++|.+||+|+
T Consensus 137 MAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 137 MANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred eeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 999999999999999999999999999999999999999999999999 789999999999999874
No 2
>KOG0546|consensus
Probab=99.96 E-value=6.3e-30 Score=170.44 Aligned_cols=66 Identities=52% Similarity=0.889 Sum_probs=63.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||.||||||||||||+.++|+|||+|+|||+||+|++|++.||.+.+ ..++|..+|+|.+||+|.
T Consensus 113 MAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 113 MANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV 179 (372)
T ss_pred hhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence 999999999999999999999999999999999999999999999999 455899999999999974
No 3
>PTZ00221 cyclophilin; Provisional
Probab=99.95 E-value=3.6e-28 Score=156.71 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=63.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++||||||+.++++||++|+|||||++||++|++|+++++ ..++|.++|+|.+||+++
T Consensus 154 Man~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 154 MISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220 (249)
T ss_pred eCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence 899999999999999999999999999999999999999999999987 688999999999999974
No 4
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.94 E-value=2.4e-27 Score=147.46 Aligned_cols=65 Identities=51% Similarity=0.931 Sum_probs=62.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||+++++|+||++|+|||||+ +||++|++|+++++ .+++|.++|+|.+||++
T Consensus 120 ma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 120 MANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred EeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 8899999999999999999999999999999999 79999999999999 78899999999999986
No 5
>PTZ00060 cyclophilin; Provisional
Probab=99.94 E-value=4.2e-27 Score=146.02 Aligned_cols=66 Identities=62% Similarity=1.051 Sum_probs=63.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
||+++|++++|||||+++++++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||++.
T Consensus 118 ma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 118 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGELQ 183 (183)
T ss_pred eccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEcC
Confidence 789999999999999999999999999999999999999999999999888999999999999973
No 6
>KOG0879|consensus
Probab=99.94 E-value=2.7e-27 Score=141.83 Aligned_cols=65 Identities=43% Similarity=0.804 Sum_probs=63.6
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||+|+++||+|||||..++.|||++|+|||+|++|+.++++||.+++ .+++|..+|.|+.||++
T Consensus 112 MANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 112 MANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred ccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 899999999999999999999999999999999999999999999999 89999999999999985
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.94 E-value=5.2e-27 Score=143.22 Aligned_cols=63 Identities=75% Similarity=1.195 Sum_probs=61.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg 63 (66)
||+.+|++++|||||++++.++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||
T Consensus 102 ma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 102 MANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred eeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 889999999999999999999999999999999999999999999999888999999999998
No 8
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.93 E-value=2.8e-26 Score=140.29 Aligned_cols=66 Identities=44% Similarity=0.704 Sum_probs=62.1
Q ss_pred CcccCCCCCCceEEEEcCC-CCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||++++++++|||||++.+ .++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+|+++.
T Consensus 93 ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 93 MVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred EeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 8999999999999999975 89999999999999999999999999988 678999999999999874
No 9
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.93 E-value=3e-26 Score=139.46 Aligned_cols=65 Identities=42% Similarity=0.731 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
||+++|++++|||||+++++++||++|+|||||++|||+|++|+++++ .+++|..+|+|.+|+++
T Consensus 88 ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 88 MANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 789999999999999999999999999999999999999999999988 67899999999999986
No 10
>KOG0881|consensus
Probab=99.93 E-value=1.4e-26 Score=137.40 Aligned_cols=64 Identities=44% Similarity=0.814 Sum_probs=61.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|||+|||+|||||||||.+.+|||+||++||||..||+|+.++..+.+ .++||..+++|.+.-.
T Consensus 98 MANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 98 MANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred hhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 899999999999999999999999999999999999999999999999 7899999999998643
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.93 E-value=1.4e-25 Score=135.82 Aligned_cols=63 Identities=41% Similarity=0.690 Sum_probs=60.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
||+++|++++|||||++++.++||++|+|||||++|||+|++|+++++ .+++|..+|+|.+|-
T Consensus 89 ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 89 MANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred EeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 788999999999999999999999999999999999999999999998 678999999999983
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.93 E-value=1.4e-25 Score=135.12 Aligned_cols=61 Identities=59% Similarity=1.013 Sum_probs=58.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~ 61 (66)
||+++|++++|||||++++.|+||++|+|||||++|||+|++|+++++ .+++|.++|+|.+
T Consensus 86 ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 86 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred EeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 789999999999999999999999999999999999999999999998 6789999999975
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.92 E-value=2.1e-25 Score=134.27 Aligned_cols=61 Identities=44% Similarity=0.847 Sum_probs=58.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~ 61 (66)
||+++|++++|||||+++++|+||++|+|||||++|||+|++|+++++.+++|.++|+|.+
T Consensus 86 ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 86 MANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred EeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 7889999999999999999999999999999999999999999999998889999999974
No 14
>KOG0111|consensus
Probab=99.92 E-value=4e-25 Score=141.14 Aligned_cols=66 Identities=58% Similarity=0.997 Sum_probs=64.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||+|+|+|||||||+..+.+|||++|+|||.|++||+|+++++..++..++|.+.|+|.+||+++
T Consensus 233 mansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 233 MANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEIE 298 (298)
T ss_pred ccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEeccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999974
No 15
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-24 Score=132.08 Aligned_cols=65 Identities=43% Similarity=0.720 Sum_probs=57.7
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeec
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~ 65 (66)
|||++ |++|+|||||++.+.+|||++|+|||+|++|||+|++|++..+. .+.|..+++|.+..++
T Consensus 87 MA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 87 MARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred EcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 99999 99999999999999999999999999999999999999997773 2456678888876654
No 16
>KOG0882|consensus
Probab=99.91 E-value=1.1e-24 Score=149.03 Aligned_cols=63 Identities=52% Similarity=0.907 Sum_probs=60.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
|||+|||+||||||||..+.||||++|||||||+.||||+++|+.+.+ ..+||++++.|.+--
T Consensus 493 manag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 493 MANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred ecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 999999999999999999999999999999999999999999999999 789999999998753
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.91 E-value=4.3e-24 Score=133.30 Aligned_cols=66 Identities=35% Similarity=0.583 Sum_probs=60.2
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCC-----CceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeecC
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~~ 66 (66)
|||.+ |++++|||||++++.++||+ +|+|||+|++|||||++|++++++ .++|..+|+|.+|++++
T Consensus 114 ma~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 114 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred eCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 78865 99999999999999999984 899999999999999999999884 46999999999999864
No 18
>KOG0884|consensus
Probab=99.91 E-value=1.9e-24 Score=127.87 Aligned_cols=62 Identities=42% Similarity=0.684 Sum_probs=58.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC--CCCCeecceEEeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKIVVANS 62 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~--~~~~P~~~v~I~~c 62 (66)
|||+||++|+||||||.+++|+||-+|++||+|++|+|+|+.|+++++ ..+||+.++.|.+.
T Consensus 89 manngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i 152 (161)
T KOG0884|consen 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152 (161)
T ss_pred cccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence 899999999999999999999999999999999999999999999999 45899988888764
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.89 E-value=2.7e-23 Score=127.18 Aligned_cols=65 Identities=29% Similarity=0.549 Sum_probs=58.1
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCC-------C-CceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeec
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~ 65 (66)
|||.+ |++++|||||++.+.++|| + +|+|||||++|||+|++|+++++. +++|..+|+|.+|.+.
T Consensus 85 ma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred ECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEEe
Confidence 78875 9999999999999988776 3 799999999999999999999983 3699999999999764
No 20
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.89 E-value=2.3e-23 Score=125.00 Aligned_cols=63 Identities=41% Similarity=0.765 Sum_probs=58.7
Q ss_pred CcccC--CCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeee
Q psy442 1 MANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~--~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~ 64 (66)
|++.+ +++++|||||+|.+.++||++|+|||+|++||++|++|++.++.+ +|.++|+|.+||+
T Consensus 91 ~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 91 MARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp EEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred ecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 56654 888999999999999999999999999999999999999998866 9999999999996
No 21
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.89 E-value=1e-22 Score=125.20 Aligned_cols=66 Identities=33% Similarity=0.497 Sum_probs=61.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||++++++++|||||++++.++||++|+|||||+ ++++++++|+++++ .+++|.++|+|.+|+++.
T Consensus 94 ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 94 MANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred ECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 8999999999999999999999999999999999 46888999999998 678999999999998863
No 22
>KOG0883|consensus
Probab=99.88 E-value=7.9e-23 Score=138.30 Aligned_cols=64 Identities=44% Similarity=0.742 Sum_probs=61.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~ 64 (66)
|||+||++|||||||++.++.+||.+||+||+|+.|+++|.+||++++ +.+||..+|+|.+.-+
T Consensus 366 MANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 366 MANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred eccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 999999999999999999999999999999999999999999999999 6799999999988755
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.87 E-value=2.1e-22 Score=122.14 Aligned_cols=62 Identities=35% Similarity=0.582 Sum_probs=55.8
Q ss_pred CcccC-CCCCCceEEEEcCCCCCCCC-----CceEEeEEEccHHHHHHHHhCCCCC-----CCeecceEEeee
Q psy442 1 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVVANS 62 (66)
Q Consensus 1 Ma~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~v~I~~c 62 (66)
||+++ |++++|||||++.+.++||+ +|+|||+|++|||+|++|+++++.. ++|..+|+|.+.
T Consensus 83 ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 83 MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 88875 89999999999999999995 7999999999999999999999833 589999999763
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.86 E-value=1.1e-21 Score=116.80 Aligned_cols=61 Identities=57% Similarity=0.927 Sum_probs=57.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~ 61 (66)
|++.++++++|||||++.+.++||++|+|||+|++||++|++|++.++ ++++|.++|+|.+
T Consensus 85 ~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 85 MANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 678888999999999999999999999999999999999999999999 5899999999964
No 25
>KOG0865|consensus
Probab=99.85 E-value=8.1e-22 Score=121.17 Aligned_cols=65 Identities=69% Similarity=1.120 Sum_probs=63.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
|||.+|++|+|||||++.+..|||++|+|||+|.+||+++++++.....+++|.++|.|.+||.+
T Consensus 103 maNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 103 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred hhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999975
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.79 E-value=3.1e-19 Score=110.35 Aligned_cols=45 Identities=42% Similarity=0.718 Sum_probs=42.3
Q ss_pred CcccC--CCCCCceEEEEcC-------CCCCCCCCceEEeEEEccHHHHHHHHh
Q psy442 1 MANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 1 Ma~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~V~~G~~vl~~I~~ 45 (66)
||+++ |++++|||||+++ +.++||++|+|||+|++|||+|++|+.
T Consensus 111 Ma~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 111 MARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred EccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 88887 6999999999998 799999999999999999999999974
No 27
>KOG0415|consensus
Probab=99.78 E-value=3.8e-19 Score=119.56 Aligned_cols=65 Identities=40% Similarity=0.612 Sum_probs=59.2
Q ss_pred CcccCCCCCCceEEEEcCC-CCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|++.|.+.+||||||||+. +..||++|+|||+|.+|+|+|.+|+..-. .+++|+++|+|.+.-+|
T Consensus 96 mvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiL 162 (479)
T KOG0415|consen 96 MVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIIL 162 (479)
T ss_pred eecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEe
Confidence 7899999999999999965 67999999999999999999999988766 78999999999987654
No 28
>KOG0885|consensus
Probab=99.60 E-value=9.4e-16 Score=103.48 Aligned_cols=65 Identities=31% Similarity=0.477 Sum_probs=60.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++.+.||||||+||+++|+|++++++||+|+ +-.-.+.+|..+.+ .+.||..+-+|.+|.++
T Consensus 101 mana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 101 MANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred ecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 8999999999999999999999999999999999 57778888988888 58899999999999875
No 29
>KOG0882|consensus
Probab=90.19 E-value=0.42 Score=34.25 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeee
Q psy442 8 TNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANS 62 (66)
Q Consensus 8 ~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~c 62 (66)
..+-+|++.-...+.+..+..|||++..+-++++.|+...+ .+..|..++.|.+.
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 34568888888888899999999999999999999999888 67788888877654
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=79.39 E-value=0.59 Score=33.53 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHH
Q psy442 11 SQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 44 (66)
Q Consensus 11 sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~ 44 (66)
..-||.-.+.+ -.-.|+|+|+|+.|||+++--+
T Consensus 270 G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 270 GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred eeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 45677654433 2336899999999999987543
No 31
>PRK00969 hypothetical protein; Provisional
Probab=77.73 E-value=1.5 Score=31.66 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCCCCCceEEeEEEccHHHHHHH
Q psy442 10 GSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 43 (66)
Q Consensus 10 ~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I 43 (66)
...-||.-.+.+ -.-.|+|+|+|+.|+|+++--
T Consensus 272 ~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a 304 (508)
T PRK00969 272 VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFA 304 (508)
T ss_pred ceeEEEECCCCC-CCccceeEEEEecceeeeecc
Confidence 346677665433 233689999999999998654
No 32
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=65.68 E-value=9.1 Score=19.22 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=18.7
Q ss_pred EccHHHHHHHHhCCCCCCCeecceEEe
Q psy442 34 VEGLDVVKKLESMGSQSGKTSKKIVVA 60 (66)
Q Consensus 34 ~~G~~vl~~I~~~~~~~~~P~~~v~I~ 60 (66)
.+|.+|++.+.+. .....+.-||+..
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFT 29 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFT 29 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEe
Confidence 4689999999987 5445555666654
No 33
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=63.31 E-value=7.8 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=20.1
Q ss_pred ceEEEEcCCCC-------CCCCCceEEeEEEccHHHHHHHH
Q psy442 11 SQFFITTVKTA-------WLDNRHVVFGSVVEGLDVVKKLE 44 (66)
Q Consensus 11 sqFfI~l~~~~-------~ld~~~~vfG~V~~G~~vl~~I~ 44 (66)
..|-|-+++.| .+.....++||+.++.+.++++.
T Consensus 72 ~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 72 GALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp TEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred CEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 34555555553 34456899999999998888775
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=59.45 E-value=1.8 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHH
Q psy442 11 SQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 44 (66)
Q Consensus 11 sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~ 44 (66)
..-||.-.+-+ -.-.|.+.|||.+||++++--+
T Consensus 272 GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 272 GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred ceEEEEecCCC-CccccceeeeeecceEEEEecc
Confidence 34555443322 1235899999999999987654
No 35
>PRK00969 hypothetical protein; Provisional
Probab=56.66 E-value=15 Score=26.68 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=16.5
Q ss_pred eEEeEEEccHHHHHHHHh
Q psy442 28 VVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 28 ~vfG~V~~G~~vl~~I~~ 45 (66)
-+||+|+.|..+|+++..
T Consensus 150 gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 150 GVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred CceEEEccchhhHhhccC
Confidence 799999999999999864
No 36
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=55.94 E-value=21 Score=25.97 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=26.7
Q ss_pred CCCCCceEEEEcCCCCCC---CCCceEEeEEEccHHHHHHHHh
Q psy442 6 PNTNGSQFFITTVKTAWL---DNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 6 ~~~~~sqFfI~l~~~~~l---d~~~~vfG~V~~G~~vl~~I~~ 45 (66)
=+...+.+.|+-.+.... ....-+||+|+.|..+|+++..
T Consensus 122 ~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 122 FDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred CCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 344455666655553321 2246899999999999999863
No 37
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=45.38 E-value=13 Score=23.47 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=24.8
Q ss_pred CCCCCCCCCceEEeEEE-ccHHHHHHHHhCCCCCCCeecceEEe
Q psy442 18 VKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQSGKTSKKIVVA 60 (66)
Q Consensus 18 ~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~~~P~~~v~I~ 60 (66)
....++|+ ++||++. +|+|.=++|.++-....+|.-.+.+.
T Consensus 29 r~~~~idG--v~~~~itvdG~DaT~~i~~m~~~~~r~~i~~v~L 70 (187)
T PF01949_consen 29 RGDRRIDG--VAFGRITVDGMDATEAIIEMVKRLFRPDIRVVML 70 (187)
T ss_dssp ETT-EEEE--EEEEEE-TT-S-HHHHHHHHHCCTTTTTEEEEEE
T ss_pred eCCeEEEE--EEEEEEEECCchHHHHHHHHHHhcccCcceEEEE
Confidence 33445555 7999998 89999999877655555665554443
No 38
>PRK00766 hypothetical protein; Provisional
Probab=44.43 E-value=27 Score=22.18 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCCCCCCCceEEeEEE-ccHHHHHHHHhCCC-CCCCeecceEE
Q psy442 18 VKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVV 59 (66)
Q Consensus 18 ~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~-~~~~P~~~v~I 59 (66)
....+.|+ .+||++. +|+|.=++|.++-. ...+|.-.+.+
T Consensus 35 r~~~~idG--v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~ 76 (194)
T PRK00766 35 RGGDWVDG--VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIM 76 (194)
T ss_pred ECCeEEee--EEEEEEEECCccHHHHHHHHHHhcccccceEEEE
Confidence 33444555 8899988 89999999876644 34455444433
No 39
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=41.05 E-value=36 Score=20.78 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.4
Q ss_pred eEEeEEEccHHHHHHHH
Q psy442 28 VVFGSVVEGLDVVKKLE 44 (66)
Q Consensus 28 ~vfG~V~~G~~vl~~I~ 44 (66)
.+|++|++|+|-|.++-
T Consensus 113 N~FatI~egle~la~~~ 129 (147)
T PF12903_consen 113 NHFATITEGLEELAEAC 129 (147)
T ss_dssp EEEEEEEESHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHH
Confidence 69999999999777664
No 40
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=31.50 E-value=31 Score=17.24 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=9.8
Q ss_pred CCCCceEEeEEEc
Q psy442 23 LDNRHVVFGSVVE 35 (66)
Q Consensus 23 ld~~~~vfG~V~~ 35 (66)
-|++|.+.|++.+
T Consensus 40 ~dg~yli~G~l~d 52 (57)
T PF10411_consen 40 EDGRYLIQGQLYD 52 (57)
T ss_dssp TTSSEEEES-EEE
T ss_pred CCCCEEEEeEEEe
Confidence 4678999999885
No 41
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=30.75 E-value=26 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.0
Q ss_pred CCCceEEEEcC
Q psy442 8 TNGSQFFITTV 18 (66)
Q Consensus 8 ~~~sqFfI~l~ 18 (66)
..|||||++-.
T Consensus 20 rfGsrl~L~DC 30 (70)
T PF06651_consen 20 RFGSRLFLTDC 30 (70)
T ss_pred eeeeeEecccc
Confidence 57889988653
No 42
>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases. Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.
Probab=26.79 E-value=23 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=17.5
Q ss_pred CCCCC---CCCCceEEeEEEccHHHHH
Q psy442 18 VKTAW---LDNRHVVFGSVVEGLDVVK 41 (66)
Q Consensus 18 ~~~~~---ld~~~~vfG~V~~G~~vl~ 41 (66)
+++|. +.++|.+.|+|.+|+-++.
T Consensus 61 CpCP~l~~g~~~yiIMG~v~dG~~~l~ 87 (109)
T cd03575 61 CPCPNITAGEGPLIIMGDVHDGMAVLQ 87 (109)
T ss_pred CCCCccccccccEEEEEEecCCeEeeC
Confidence 34664 4668999999999976553
No 43
>KOG1816|consensus
Probab=25.46 E-value=68 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=24.7
Q ss_pred ceEEe-EEEccHHHHHHHHhCCCCC-----CCeecceEEeeeeecC
Q psy442 27 HVVFG-SVVEGLDVVKKLESMGSQS-----GKTSKKIVVANSGQLS 66 (66)
Q Consensus 27 ~~vfG-~V~~G~~vl~~I~~~~~~~-----~~P~~~v~I~~cg~~~ 66 (66)
.+=+| +|+---..|+++.++-..- =+-..-.+.++||+|+
T Consensus 33 ~~~~GgKIilPPSaL~~Ls~lnI~yPMlFkLtn~~~~r~THcGVLE 78 (308)
T KOG1816|consen 33 DVNKGGKIILPPSALDRLSSLNITYPMLFKLTNVDVDRVTHCGVLE 78 (308)
T ss_pred ccccCCeEEeCHHHHHHHHHhcCCCceEEEEeccccceeeeeeEEE
Confidence 44444 6887777888887754411 0112333899999985
No 44
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=24.69 E-value=2.5e+02 Score=19.88 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=36.3
Q ss_pred CceEEEEcC---------CCCCCCCCceEEeEEEccHH-HHHHHHhCCCCCCCeecceEE
Q psy442 10 GSQFFITTV---------KTAWLDNRHVVFGSVVEGLD-VVKKLESMGSQSGKTSKKIVV 59 (66)
Q Consensus 10 ~sqFfI~l~---------~~~~ld~~~~vfG~V~~G~~-vl~~I~~~~~~~~~P~~~v~I 59 (66)
+=+||++-+ +-++-.|+||.=|=.++=+| -|+.|-.+|..+.....+...
T Consensus 247 ~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~~~~p~vM 306 (375)
T COG0026 247 AVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTTLLSPSVM 306 (375)
T ss_pred EEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCccccCceEE
Confidence 346777655 57788899999998888777 889999888855444444433
No 45
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=24.43 E-value=64 Score=16.84 Aligned_cols=21 Identities=48% Similarity=0.570 Sum_probs=14.7
Q ss_pred CCCCceEEeEEEccHHHHHHHHh
Q psy442 23 LDNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 23 ld~~~~vfG~V~~G~~vl~~I~~ 45 (66)
+|..-.++|+|++| -+++|.-
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G 36 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVG 36 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcC
Confidence 45567899999999 3455543
No 46
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=13 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=13.9
Q ss_pred eEEeEEEccHHHHHHHH
Q psy442 28 VVFGSVVEGLDVVKKLE 44 (66)
Q Consensus 28 ~vfG~V~~G~~vl~~I~ 44 (66)
-++||++++++.|.++.
T Consensus 100 NvIGrIv~~lE~lk~v~ 116 (126)
T COG2164 100 NVIGRIVKNLELLKSVD 116 (126)
T ss_pred HHHHHHHhhHHhhhccc
Confidence 37899999999888775
No 47
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=21.09 E-value=68 Score=18.79 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=14.4
Q ss_pred CCCCCceEEeEEEc--cHHHH
Q psy442 22 WLDNRHVVFGSVVE--GLDVV 40 (66)
Q Consensus 22 ~ld~~~~vfG~V~~--G~~vl 40 (66)
.+|++..||-+|++ |-..-
T Consensus 59 v~Dg~tlv~~nviSaSGAkYa 79 (112)
T COG3895 59 VLDGKTLVLSNVISASGAKYA 79 (112)
T ss_pred EecCCEEEEeeeeeccCcccc
Confidence 38999999999995 44443
No 48
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.57 E-value=1e+02 Score=18.59 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=14.7
Q ss_pred CCCCceEEeEEEccHH-HHHHH
Q psy442 23 LDNRHVVFGSVVEGLD-VVKKL 43 (66)
Q Consensus 23 ld~~~~vfG~V~~G~~-vl~~I 43 (66)
+--+-|.||-+++|-+ .++++
T Consensus 33 vtiKeTCfGaii~G~Ed~v~kl 54 (142)
T COG4029 33 VTIKETCFGAIIDGPEDEVRKL 54 (142)
T ss_pred eEeeeeeeeeeecCcHHHHHHH
Confidence 3446899999998755 44444
No 49
>KOG3424|consensus
Probab=20.34 E-value=89 Score=18.69 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.9
Q ss_pred CCCceEEeEEEccHHHHHHHHh
Q psy442 24 DNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 24 d~~~~vfG~V~~G~~vl~~I~~ 45 (66)
-++-+-||.|.+..|++.++|.
T Consensus 66 ggkstgfalIYdsve~akkfEp 87 (132)
T KOG3424|consen 66 GGKSTGFALIYDSVEYAKKFEP 87 (132)
T ss_pred CcccceeeeeeehHHHHHhcCc
Confidence 3578899999999999998874
Done!