Query psy442
Match_columns 66
No_of_seqs 116 out of 1036
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2igv_A Peptidyl-prolyl CIS-tra 100.0 2.6E-30 8.8E-35 158.4 7.6 66 1-66 107-172 (173)
2 1qng_A Peptidyl-prolyl CIS-tra 100.0 3E-30 1E-34 157.8 7.5 65 1-65 106-170 (170)
3 2r99_A Peptidyl-prolyl CIS-tra 100.0 4.2E-30 1.4E-34 157.5 7.7 66 1-66 108-173 (173)
4 2cmt_A Peptidyl-prolyl CIS-tra 100.0 3.9E-30 1.3E-34 157.6 7.2 66 1-66 107-172 (172)
5 3rdd_A Peptidyl-prolyl CIS-tra 100.0 5.2E-30 1.8E-34 158.4 7.6 66 1-66 119-184 (184)
6 2wfi_A Peptidyl-prolyl CIS-tra 100.0 6.3E-30 2.1E-34 157.4 7.5 65 1-65 114-179 (179)
7 2z6w_A Peptidyl-prolyl CIS-tra 100.0 7.4E-30 2.5E-34 155.4 7.7 66 1-66 100-165 (165)
8 3pmp_A Cyclophilin A; peptidyl 100.0 7.7E-30 2.6E-34 155.1 7.5 66 1-66 99-164 (164)
9 1a58_A Cyclophilin; isomerase, 100.0 8.3E-30 2.8E-34 156.6 7.5 66 1-66 111-177 (177)
10 1mzw_A Cyclophilin H, U-snRNP- 100.0 7.2E-30 2.5E-34 156.9 6.6 65 1-65 112-177 (177)
11 2he9_A NK-tumor recognition pr 100.0 1.7E-29 5.8E-34 157.0 7.6 66 1-66 124-190 (192)
12 2poy_A Peptidyl-prolyl CIS-tra 100.0 1.6E-29 5.3E-34 156.5 7.2 64 1-64 123-186 (186)
13 2haq_A Cyclophilin; rotamase, 100.0 1.6E-29 5.6E-34 154.9 6.6 65 1-65 107-172 (172)
14 3k2c_A Peptidyl-prolyl CIS-tra 100.0 4.6E-29 1.6E-33 155.1 7.7 66 1-66 124-191 (193)
15 2c3b_A Ppiase, cyclophilin; is 100.0 4.5E-29 1.5E-33 152.8 6.8 65 1-65 104-172 (172)
16 4fru_A Cyclophilin B, peptidyl 100.0 7.2E-29 2.5E-33 153.2 7.4 65 1-65 109-174 (185)
17 3ich_A Peptidyl-prolyl CIS-tra 100.0 1.6E-28 5.6E-33 152.1 7.4 65 1-65 112-177 (188)
18 1z81_A Cyclophilin; structural 99.9 3.1E-28 1.1E-32 154.6 6.6 65 1-65 161-229 (229)
19 1w74_A Peptidyl-prolyl CIS-tra 99.9 4E-28 1.4E-32 150.7 6.6 65 1-65 124-191 (191)
20 2x7k_A Peptidyl-prolyl CIS-tra 99.9 5.5E-28 1.9E-32 147.3 7.1 65 1-65 100-165 (166)
21 3bo7_A Peptidyl-prolyl CIS-tra 99.9 5.5E-28 1.9E-32 150.9 6.5 65 1-65 107-172 (201)
22 2poe_A Cyclophilin-like protei 99.9 9.5E-28 3.2E-32 148.4 7.4 66 1-66 105-175 (185)
23 2ok3_A Peptidyl-prolyl CIS-tra 99.9 8.5E-28 2.9E-32 145.8 6.9 66 1-66 89-156 (161)
24 2fu0_A Cyclophilin, putative; 99.9 8.4E-28 2.9E-32 145.8 6.7 65 1-65 94-159 (160)
25 2b71_A Cyclophilin-like protei 99.9 9.6E-28 3.3E-32 149.5 6.9 65 1-65 127-192 (196)
26 1zkc_A Peptidyl-prolyl CIS-tra 99.9 1.4E-27 4.9E-32 148.8 7.2 65 1-65 108-174 (197)
27 2ose_A Probable peptidyl-proly 99.9 1.2E-27 4.2E-32 152.2 6.2 66 1-66 131-207 (234)
28 2k7n_A Peptidyl-prolyl CIS-tra 99.9 1.2E-27 4.3E-32 149.7 5.7 66 1-66 100-166 (203)
29 2a2n_A Peptidylprolyl isomeras 99.9 6.1E-27 2.1E-31 143.9 6.7 64 1-64 110-175 (176)
30 1lop_A Cyclophilin A; rotamase 99.9 7.2E-27 2.5E-31 142.0 5.3 66 1-66 85-164 (164)
31 3s6m_A Peptidyl-prolyl CIS-tra 99.9 1.6E-26 5.6E-31 140.6 6.7 65 1-65 89-167 (167)
32 1v9t_A Cyclophilin B; beta bar 99.9 1.3E-26 4.4E-31 141.1 4.8 66 1-66 90-166 (166)
33 1ihg_A Cyclophilin 40; ppiase 99.9 1.5E-25 5E-30 147.6 6.6 65 1-65 120-184 (370)
34 2hq6_A Serologically defined c 99.9 5E-25 1.7E-29 136.2 5.2 64 1-65 113-179 (185)
35 3bkp_A Cyclophilin; malaria, i 99.9 5.4E-24 1.9E-28 135.3 4.5 64 1-65 112-192 (232)
36 3rfy_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.6E-24 120.8 2.3 56 1-61 291-355 (369)
37 2k9u_B Filamin-binding LIM pro 84.6 0.81 2.8E-05 19.3 2.0 20 1-20 1-20 (26)
38 1zx8_A Hypothetical protein TM 42.1 5.4 0.00019 23.1 0.0 17 27-43 107-123 (136)
39 3kop_A Uncharacterized protein 40.7 23 0.00077 21.7 2.6 31 11-43 127-165 (188)
40 2nnz_A Hypothetical protein; b 26.0 5.4 0.00019 23.4 -1.8 32 12-43 105-142 (153)
41 4ew7_A Conjugative transfer: r 20.3 54 0.0019 18.5 1.7 26 9-34 97-122 (127)
42 1xn9_A 30S ribosomal protein S 20.3 78 0.0027 17.2 2.3 23 23-45 60-82 (101)
No 1
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=99.96 E-value=2.6e-30 Score=158.41 Aligned_cols=66 Identities=73% Similarity=1.097 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++.+++|.++|+|.+||+|+
T Consensus 107 mAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLK 172 (173)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEEC
T ss_pred EeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEEeEEEc
Confidence 899999999999999999999999999999999999999999999999889999999999999985
No 2
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=99.96 E-value=3e-30 Score=157.76 Aligned_cols=65 Identities=55% Similarity=1.011 Sum_probs=63.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++.+++|.++|+|.+||+|
T Consensus 106 mAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~cG~l 170 (170)
T 1qng_A 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170 (170)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC
T ss_pred EeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCeEEEeceeC
Confidence 89999999999999999999999999999999999999999999999988999999999999986
No 3
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=99.96 E-value=4.2e-30 Score=157.50 Aligned_cols=66 Identities=58% Similarity=1.041 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++.+++|.++|+|.+||+|+
T Consensus 108 mA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~cG~l~ 173 (173)
T 2r99_A 108 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEYV 173 (173)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEECC
T ss_pred EccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEEEeeeEC
Confidence 899999999999999999999999999999999999999999999999889999999999999985
No 4
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=99.96 E-value=3.9e-30 Score=157.59 Aligned_cols=66 Identities=61% Similarity=1.041 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||+|++|+++++.+++|.++|+|.+||+|+
T Consensus 107 mA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~g~l~ 172 (172)
T 2cmt_A 107 MANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGELI 172 (172)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEEEEEEC
T ss_pred EeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEEeEeEC
Confidence 899999999999999999999999999999999999999999999999889999999999999985
No 5
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=99.96 E-value=5.2e-30 Score=158.36 Aligned_cols=66 Identities=67% Similarity=1.092 Sum_probs=64.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++.+++|.++|+|.+||+|+
T Consensus 119 mA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~cG~l~ 184 (184)
T 3rdd_A 119 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE 184 (184)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEECC
T ss_pred EEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEeCeEEC
Confidence 899999999999999999999999999999999999999999999999999999999999999985
No 6
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=99.96 E-value=6.3e-30 Score=157.42 Aligned_cols=65 Identities=46% Similarity=0.747 Sum_probs=62.9
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++|+|||||++.++++||++|+|||+|++|||||++|+++++ .+++|.++|+|.+||+|
T Consensus 114 MAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l 179 (179)
T 2wfi_A 114 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179 (179)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred EEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence 899999999999999999999999999999999999999999999999 56899999999999986
No 7
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=99.96 E-value=7.4e-30 Score=155.42 Aligned_cols=66 Identities=76% Similarity=1.205 Sum_probs=64.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||+|++|+++++.+++|.++|+|.+||+|+
T Consensus 100 mA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~g~l~ 165 (165)
T 2z6w_A 100 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165 (165)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEECC
T ss_pred EeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCcEEEEEeEEEC
Confidence 899999999999999999999999999999999999999999999999889999999999999985
No 8
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=99.96 E-value=7.7e-30 Score=155.10 Aligned_cols=66 Identities=64% Similarity=1.045 Sum_probs=63.8
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||||++|||+|++|+++++.+++|.++|+|.+||+|.
T Consensus 99 ma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v~I~~cg~l~ 164 (164)
T 3pmp_A 99 MANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164 (164)
T ss_dssp ECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC-
T ss_pred EeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcccCEEEEeCeEEC
Confidence 899999999999999999999999999999999999999999999999999999999999999974
No 9
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=99.96 E-value=8.3e-30 Score=156.60 Aligned_cols=66 Identities=52% Similarity=0.808 Sum_probs=63.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++ .+++|.++|+|.+||+|.
T Consensus 111 mAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l~ 177 (177)
T 1a58_A 111 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177 (177)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEC
T ss_pred EeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEEC
Confidence 899999999999999999999999999999999999999999999999 568999999999999973
No 10
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=99.96 E-value=7.2e-30 Score=156.94 Aligned_cols=65 Identities=46% Similarity=0.902 Sum_probs=63.2
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+||+|
T Consensus 112 mAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l 177 (177)
T 1mzw_A 112 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177 (177)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred EccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence 899999999999999999999999999999999999999999999999 78899999999999986
No 11
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=156.97 Aligned_cols=66 Identities=42% Similarity=0.724 Sum_probs=63.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++|+|||||++.++++||++|+|||+|++|||||++|+++++ .+++|.++|+|.+||+|.
T Consensus 124 MAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~ 190 (192)
T 2he9_A 124 MANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190 (192)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEECC
T ss_pred EEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEEEc
Confidence 899999999999999999999999999999999999999999999999 568999999999999974
No 12
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=99.96 E-value=1.6e-29 Score=156.53 Aligned_cols=64 Identities=64% Similarity=1.063 Sum_probs=62.6
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~ 64 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++.+++|.++|+|.+||+
T Consensus 123 MAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~cG~ 186 (186)
T 2poy_A 123 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASGV 186 (186)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEC
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999998899999999999995
No 13
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=99.96 E-value=1.6e-29 Score=154.90 Aligned_cols=65 Identities=57% Similarity=0.961 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||++|||+|++|+++++ ..++|.++|+|.+||+|
T Consensus 107 mAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 172 (172)
T 2haq_A 107 MANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172 (172)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred EccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence 899999999999999999999999999999999999999999999999 45699999999999986
No 14
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=99.96 E-value=4.6e-29 Score=155.09 Aligned_cols=66 Identities=58% Similarity=0.944 Sum_probs=64.1
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCee--cceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTS--KKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~--~~v~I~~cg~~~ 66 (66)
|||++|++++|||||+++++++||++|+|||||++|||||++|+++++.+++|. ++|+|.+||+|+
T Consensus 124 mAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~cG~l~ 191 (193)
T 3k2c_A 124 MANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLG 191 (193)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEEEEECC
T ss_pred EEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEEceEeC
Confidence 899999999999999999999999999999999999999999999999888999 999999999985
No 15
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=99.95 E-value=4.5e-29 Score=152.82 Aligned_cols=65 Identities=58% Similarity=1.003 Sum_probs=53.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEc--cHHHHHHHHhCCCCCC--CeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~~~~~~--~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||++ |||||++|+++++..+ +|.++|+|.+||+|
T Consensus 104 mA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 104 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp EC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred EeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 89999999999999999999999999999999999 9999999999999554 99999999999986
No 16
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=99.95 E-value=7.2e-29 Score=153.21 Aligned_cols=65 Identities=58% Similarity=0.983 Sum_probs=63.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||++|||+|++|+++++ .+++|.++|+|.+||++
T Consensus 109 ma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 174 (185)
T 4fru_A 109 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174 (185)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred EeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEE
Confidence 899999999999999999999999999999999999999999999999 57899999999999987
No 17
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=99.95 E-value=1.6e-28 Score=152.13 Aligned_cols=65 Identities=60% Similarity=1.008 Sum_probs=62.6
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||++|||||++|+++++ ..++|.++|+|.+||++
T Consensus 112 mAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l 177 (188)
T 3ich_A 112 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177 (188)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred EccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEE
Confidence 899999999999999999999999999999999999999999999999 55699999999999986
No 18
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=99.95 E-value=3.1e-28 Score=154.65 Aligned_cols=65 Identities=49% Similarity=0.820 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEE--ccHHHHHHHHhCCCCC--CCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQS--GKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~--~G~~vl~~I~~~~~~~--~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||||+ +|||||++|+++++.. ++|.++|+|.+||+|
T Consensus 161 MAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 161 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229 (229)
T ss_dssp ECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred eccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence 8999999999999999999999999999999999 9999999999999944 899999999999986
No 19
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=99.95 E-value=4e-28 Score=150.74 Aligned_cols=65 Identities=40% Similarity=0.664 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEc--cHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++|+|||||++.++++||++|+|||||++ ||+||++|+++++ .+++|.++|+|.+|+++
T Consensus 124 MAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 124 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS 191 (191)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEEC
T ss_pred EeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEC
Confidence 89999999999999999999999999999999999 9999999999999 56899999999999974
No 20
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=99.95 E-value=5.5e-28 Score=147.33 Aligned_cols=65 Identities=37% Similarity=0.735 Sum_probs=62.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||+|++|||+|++|+++++ .+++|.++|+|.+|.++
T Consensus 100 mAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp ECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred EeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999 55899999999999876
No 21
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=99.95 E-value=5.5e-28 Score=150.90 Aligned_cols=65 Identities=38% Similarity=0.563 Sum_probs=62.7
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++ .+++|.++|+|.+|+++
T Consensus 107 mA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~v~ 172 (201)
T 3bo7_A 107 MANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVF 172 (201)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEEEEEE
T ss_pred EeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEE
Confidence 899999999999999999999999999999999999999999999999 56899999999999986
No 22
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=99.95 E-value=9.5e-28 Score=148.39 Aligned_cols=66 Identities=39% Similarity=0.620 Sum_probs=62.9
Q ss_pred CcccC----CCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~----~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++ |++++|||||+++++++||++|+|||+|++||+||++|+++++ .+++|.++|+|.+|+++.
T Consensus 105 mA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~ 175 (185)
T 2poe_A 105 MASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHS 175 (185)
T ss_dssp ECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEEC
T ss_pred EecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEC
Confidence 89998 9999999999999999999999999999999999999999999 568999999999999863
No 23
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=99.95 E-value=8.5e-28 Score=145.79 Aligned_cols=66 Identities=39% Similarity=0.613 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCC-C-CCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-S-GKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~-~-~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||||++|||+|++|+++++. + ++|.++|+|.+|.++.
T Consensus 89 ma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred EecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 8999999999999999999999999999999999999999999999994 4 8999999999999863
No 24
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=99.94 E-value=8.4e-28 Score=145.80 Aligned_cols=65 Identities=48% Similarity=0.749 Sum_probs=62.5
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||+|++|||+|++|+++++ .+++|.++|+|.+|.++
T Consensus 94 mA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 94 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred EecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999 57899999999999875
No 25
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=99.94 E-value=9.6e-28 Score=149.53 Aligned_cols=65 Identities=31% Similarity=0.549 Sum_probs=62.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||+++++++||++|+|||||++||++|++|+++++ .+++|.++|+|.+|.++
T Consensus 127 MAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 192 (196)
T 2b71_A 127 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTA 192 (196)
T ss_dssp ECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC-
T ss_pred EccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999 56899999999999986
No 26
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=99.94 E-value=1.4e-27 Score=148.85 Aligned_cols=65 Identities=42% Similarity=0.729 Sum_probs=62.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCC-C-CCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-S-GKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~-~-~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||++.++++||++|+|||+|++|||||++|+++++. + ++|.++|+|.+|+++
T Consensus 108 MAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~ 174 (197)
T 1zkc_A 108 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 174 (197)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred EecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999994 3 899999999999986
No 27
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=99.94 E-value=1.2e-27 Score=152.21 Aligned_cols=66 Identities=30% Similarity=0.429 Sum_probs=62.7
Q ss_pred Ccc----cCCCCCCceEEEEcCC------CCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MAN----AGPNTNGSQFFITTVK------TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~----~~~~~~~sqFfI~l~~------~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
||| ++|++++|||||++.+ .+|||++|+|||+|++|||||++|+++++ .+++|.++|+|.+||++.
T Consensus 131 MAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp ECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred EecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence 899 8999999999999999 99999999999999999999999999999 458999999999999874
No 28
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=99.94 E-value=1.2e-27 Score=149.68 Aligned_cols=66 Identities=36% Similarity=0.726 Sum_probs=63.0
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCC-CCCCeecceEEeeeeecC
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 66 (66)
|||++|++++|||||++.++++||++|+|||||++|||||++|+++++ .+++|.++|+|.+|++++
T Consensus 100 MAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~ 166 (203)
T 2k7n_A 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG 166 (203)
T ss_dssp EEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECC
T ss_pred EeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999 568999999999999864
No 29
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=99.94 E-value=6.1e-27 Score=143.85 Aligned_cols=64 Identities=48% Similarity=0.834 Sum_probs=61.3
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCC--CCCeecceEEeeeee
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ--SGKTSKKIVVANSGQ 64 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~--~~~P~~~v~I~~cg~ 64 (66)
|||++|++++|||||++.++++||++|+|||+|++|||+|++|+++++. +++|.++|+|.+|.+
T Consensus 110 mA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v 175 (176)
T 2a2n_A 110 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175 (176)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred EEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence 8999999999999999999999999999999999999999999999985 789999999999864
No 30
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=99.93 E-value=7.2e-27 Score=141.98 Aligned_cols=66 Identities=26% Similarity=0.505 Sum_probs=61.6
Q ss_pred Cccc-CCCCCCceEEEEcCCCCCCCCC--------ceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeecC
Q psy442 1 MANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~-~~~~~~sqFfI~l~~~~~ld~~--------~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~~ 66 (66)
|||+ +|++++|||||++.++++||++ |+|||+|++|||||++|+++++. +++|.++|+|.+|++++
T Consensus 85 mA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~v~~ 164 (164)
T 1lop_A 85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164 (164)
T ss_dssp ECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEEECC
T ss_pred EeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEEEEEEeC
Confidence 8865 7999999999999999999998 99999999999999999999984 48999999999999874
No 31
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=99.93 E-value=1.6e-26 Score=140.60 Aligned_cols=65 Identities=29% Similarity=0.555 Sum_probs=61.0
Q ss_pred Ccc-cCCCCCCceEEEEcCCCCCCCCC--------ceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeec
Q psy442 1 MAN-AGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~-~~~~~~~sqFfI~l~~~~~ld~~--------~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~ 65 (66)
||| .+|++++|||||++.++++||++ |+|||||++|||+|++|+++++. +++|.++|+|.+|.+|
T Consensus 89 mA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~il 167 (167)
T 3s6m_A 89 MARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVVV 167 (167)
T ss_dssp ECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCEEEEEEEC
T ss_pred EecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeEEEEEEEC
Confidence 898 57999999999999999999998 99999999999999999999994 4799999999999875
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=99.93 E-value=1.3e-26 Score=141.10 Aligned_cols=66 Identities=35% Similarity=0.581 Sum_probs=61.6
Q ss_pred Cccc-CCCCCCceEEEEcCCCCCCCCC-----ceEEeEEEccHHHHHHHHhCCCC-----CCCeecceEEeeeeecC
Q psy442 1 MANA-GPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESMGSQ-----SGKTSKKIVVANSGQLS 66 (66)
Q Consensus 1 Ma~~-~~~~~~sqFfI~l~~~~~ld~~-----~~vfG~V~~G~~vl~~I~~~~~~-----~~~P~~~v~I~~cg~~~ 66 (66)
|||+ +|++++|||||++.+.++||++ |+|||+|++|||||++|+++++. .++|.++|+|.+|.+++
T Consensus 90 mA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 166 (166)
T 1v9t_A 90 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166 (166)
T ss_dssp ECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEECC
T ss_pred EeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEEEEEEeC
Confidence 8987 5999999999999999999998 99999999999999999999984 37899999999999874
No 33
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.92 E-value=1.5e-25 Score=147.62 Aligned_cols=65 Identities=57% Similarity=0.848 Sum_probs=62.8
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++|+|||||++.+.++||++|+|||+|++|++++++|+.+++..++|..+|+|.+||++
T Consensus 120 ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~~v~I~~~g~l 184 (370)
T 1ihg_A 120 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184 (370)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEEEEEE
T ss_pred EeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccceeEEEEEEEEe
Confidence 89999999999999999999999999999999999999999999999966999999999999986
No 34
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=136.20 Aligned_cols=64 Identities=34% Similarity=0.544 Sum_probs=59.4
Q ss_pred CcccCCCCCCceEEEEcCCCCCCCCCceEEeEEEccHHH--HHHHHhCCC-CCCCeecceEEeeeeec
Q psy442 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV--VKKLESMGS-QSGKTSKKIVVANSGQL 65 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~v--l~~I~~~~~-~~~~P~~~v~I~~cg~~ 65 (66)
|||++|++++|||||+++++++||++|+|||||+ |+++ +++|+++++ .+++|.++|+|.+|+++
T Consensus 113 MA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 113 MANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp ECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred EccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 8999999999999999999999999999999999 8876 468888888 68899999999999986
No 35
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.89 E-value=5.4e-24 Score=135.32 Aligned_cols=64 Identities=30% Similarity=0.495 Sum_probs=57.6
Q ss_pred CcccCC--------------CCCCceEEEEcCCCCCCCCCceEEeEEEccHHH--HHHHHhCCC-CCCCeecceEEeeee
Q psy442 1 MANAGP--------------NTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV--VKKLESMGS-QSGKTSKKIVVANSG 63 (66)
Q Consensus 1 Ma~~~~--------------~~~~sqFfI~l~~~~~ld~~~~vfG~V~~G~~v--l~~I~~~~~-~~~~P~~~v~I~~cg 63 (66)
|||+++ ++++|||||++.++++||++|+|||+|+ |+++ +++|+.+++ .+++|.++|+|.+|+
T Consensus 112 MA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~ 190 (232)
T 3bkp_A 112 VANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVD 190 (232)
T ss_dssp ECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEE
T ss_pred EeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEE
Confidence 888886 6999999999999999999999999999 6655 899999998 678999999999999
Q ss_pred ec
Q psy442 64 QL 65 (66)
Q Consensus 64 ~~ 65 (66)
++
T Consensus 191 vl 192 (232)
T 3bkp_A 191 VL 192 (232)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=99.76 E-value=1.6e-19 Score=120.77 Aligned_cols=56 Identities=30% Similarity=0.427 Sum_probs=49.6
Q ss_pred Cccc--CCCCCCceEEEEc-------CCCCCCCCCceEEeEEEccHHHHHHHHhCCCCCCCeecceEEee
Q psy442 1 MANA--GPNTNGSQFFITT-------VKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVAN 61 (66)
Q Consensus 1 Ma~~--~~~~~~sqFfI~l-------~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~v~I~~ 61 (66)
|||+ +||+++|||||++ .+.++||++|+|||+|++|||||++|++ +.....|+|.+
T Consensus 291 MAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~-----GD~I~sv~I~~ 355 (369)
T 3rfy_A 291 MAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV-----GDVIESIQVVS 355 (369)
T ss_dssp CSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCT-----TCEEEEEEEEE
T ss_pred EeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhC-----CCceEEEEEec
Confidence 8998 7999999999999 4789999999999999999999999985 45667777765
No 37
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=84.61 E-value=0.81 Score=19.30 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=14.7
Q ss_pred CcccCCCCCCceEEEEcCCC
Q psy442 1 MANAGPNTNGSQFFITTVKT 20 (66)
Q Consensus 1 Ma~~~~~~~~sqFfI~l~~~ 20 (66)
||......-.|..||||.+-
T Consensus 1 ma~kpeKR~aSSvFITLapp 20 (26)
T 2k9u_B 1 MASKPEKRVASSVFITLAPP 20 (26)
T ss_dssp CCCCSSSSCEEEEEEEECCS
T ss_pred CCCcchhheeeeEEEEecCc
Confidence 67655566778899999763
No 38
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=42.08 E-value=5.4 Score=23.06 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=13.8
Q ss_pred ceEEeEEEccHHHHHHH
Q psy442 27 HVVFGSVVEGLDVVKKL 43 (66)
Q Consensus 27 ~~vfG~V~~G~~vl~~I 43 (66)
-.+||||.+|++.+.++
T Consensus 107 v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 107 VNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp EEEEEEEEECGGGGGGC
T ss_pred cEEEEEEccCHHHHhhC
Confidence 67999999998776554
No 39
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=40.67 E-value=23 Score=21.68 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=21.1
Q ss_pred ceEEEEcCCCC--------CCCCCceEEeEEEccHHHHHHH
Q psy442 11 SQFFITTVKTA--------WLDNRHVVFGSVVEGLDVVKKL 43 (66)
Q Consensus 11 sqFfI~l~~~~--------~ld~~~~vfG~V~~G~~vl~~I 43 (66)
....|-.+... |+-+ .+|++|++|+|-|..+
T Consensus 127 ~dl~ifYG~~~~l~~~~~GwlpG--N~F~TIveGle~la~~ 165 (188)
T 3kop_A 127 VDLAVFYGRNNLLLNGDTGWVPG--NVFATIVEGLDEMAAA 165 (188)
T ss_dssp EEEEEECSSSCCCEETTTEECCE--EEEEEEEESHHHHHHH
T ss_pred eEEEEEecccccccccccceecC--cEEEEEecCHHHHHHH
Confidence 35555555433 4444 6999999999977665
No 40
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=26.02 E-value=5.4 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCCC------CCceEEeEEEccHHHHHHH
Q psy442 12 QFFITTVKTAWLD------NRHVVFGSVVEGLDVVKKL 43 (66)
Q Consensus 12 qFfI~l~~~~~ld------~~~~vfG~V~~G~~vl~~I 43 (66)
.+-|-+++.|... ..-.+||+|++|++.|.++
T Consensus 105 ~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 105 AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 3555566654222 1357899999998776654
No 41
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=20.34 E-value=54 Score=18.45 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCCCCCceEEeEEE
Q psy442 9 NGSQFFITTVKTAWLDNRHVVFGSVV 34 (66)
Q Consensus 9 ~~sqFfI~l~~~~~ld~~~~vfG~V~ 34 (66)
-++-|.|-+..-..+|....+|+|+-
T Consensus 97 ~~e~yQIRmE~iSf~~~e~~~lWQiN 122 (127)
T 4ew7_A 97 HGEIYQIRMENISFDNNEIIVLWQIN 122 (127)
T ss_dssp TTEEEEEEEEEEECTTCCEEEEEEEE
T ss_pred CCceEEEEEEEeeecCCceEEEEEee
Confidence 45778888877788888999999863
No 42
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.30 E-value=78 Score=17.19 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.7
Q ss_pred CCCCceEEeEEEccHHHHHHHHh
Q psy442 23 LDNRHVVFGSVVEGLDVVKKLES 45 (66)
Q Consensus 23 ld~~~~vfG~V~~G~~vl~~I~~ 45 (66)
-.++-+.|+.|.+..|.+.+++.
T Consensus 60 G~gkstG~a~IYds~e~akk~Ep 82 (101)
T 1xn9_A 60 GMQESKGYAKLYEDADRMKQVEQ 82 (101)
T ss_dssp SSSEEEEEEEECSCHHHHHHHHT
T ss_pred CCceEEEEEEEECCHHHHHhhCc
Confidence 34578899999999999999984
Done!