RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy442
(66 letters)
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 139 bits (354), Expect = 8e-45
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTN SQFFIT V WLD +HVVFG V+EG++VV+++E G++SG + +V+
Sbjct: 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVIT 165
Query: 61 NSGQL 65
+ G+L
Sbjct: 166 DCGEL 170
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 139 bits (353), Expect = 8e-45
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 100 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 159
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 160 DCGQLS 165
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 139 bits (353), Expect = 1e-44
Identities = 42/66 (63%), Positives = 53/66 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E GS SGKT+ I +
Sbjct: 99 MANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKIT 158
Query: 61 NSGQLS 66
+ G ++
Sbjct: 159 DCGTVA 164
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 138 bits (351), Expect = 2e-44
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGLDVVK +ES GSQSGK K ++A
Sbjct: 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIA 166
Query: 61 NSGQL 65
+ GQL
Sbjct: 167 DCGQL 171
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 138 bits (350), Expect = 4e-44
Identities = 38/65 (58%), Positives = 53/65 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A
Sbjct: 108 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA 167
Query: 61 NSGQL 65
+ G+
Sbjct: 168 DCGEY 172
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 138 bits (350), Expect = 4e-44
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+ES+GS+SGK + ++++
Sbjct: 107 MANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIIS 166
Query: 61 NSGQL 65
G+L
Sbjct: 167 RCGEL 171
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 137 bits (347), Expect = 1e-43
Identities = 44/65 (67%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E GS++GKTSKKI +A
Sbjct: 119 MANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIA 178
Query: 61 NSGQL 65
+ GQL
Sbjct: 179 DCGQL 183
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 135 bits (342), Expect = 8e-43
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV WLD +HVVFG V+EG++VVK +E GSQ+GK +K + +
Sbjct: 123 MANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCIT 182
Query: 61 NSG 63
SG
Sbjct: 183 ASG 185
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 132 bits (335), Expect = 6e-42
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGPNTNGSQFFITT T WLD RHVVFG V++G+DVV ++E + S + K + +
Sbjct: 107 MANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166
Query: 60 ANSGQL 65
SG+L
Sbjct: 167 VASGEL 172
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 132 bits (335), Expect = 9e-42
Identities = 40/66 (60%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+ES + S K K +++
Sbjct: 112 MANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 171
Query: 60 ANSGQL 65
A+ G++
Sbjct: 172 ADCGKI 177
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 133 bits (336), Expect = 9e-42
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK--KIV 58
MAN G +TNGSQFFIT KT WLD +HVVFG VVEG+DVV K+ GS+SG+ K +I
Sbjct: 124 MANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIE 183
Query: 59 VANSGQLS 66
+ + G L
Sbjct: 184 IRDCGVLG 191
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 132 bits (334), Expect = 1e-41
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MAN+GP+TNG QFFIT K WLD +HVVFG +++GL V++K+E++ + + K +V+
Sbjct: 112 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 171
Query: 60 ANSGQL 65
+ G++
Sbjct: 172 SQCGEM 177
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 130 bits (330), Expect = 6e-41
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT LD HVVFG V+ G +V++++E++ + + + + V
Sbjct: 124 MANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 183
Query: 60 ANSGQLS 66
+ G L+
Sbjct: 184 IDCGVLA 190
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 129 bits (328), Expect = 7e-41
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MAN GPNTNGSQFFITT L+N HVVFG VV G +VV K+E + + S + +V+
Sbjct: 111 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170
Query: 60 ANSGQL 65
N G+L
Sbjct: 171 LNCGEL 176
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 129 bits (328), Expect = 9e-41
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MAN G +TNGSQFFITT T LD HVVFG V+ G +VV+++E+ + + K ++ +
Sbjct: 114 MANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 173
Query: 60 ANSGQL 65
+ G+L
Sbjct: 174 LSCGEL 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 132 bits (334), Expect = 7e-40
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T LD +HVVFG V++G+ V K LE++ + K +K V+A
Sbjct: 120 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIA 179
Query: 61 NSGQLS 66
G+L
Sbjct: 180 ECGELK 185
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 127 bits (321), Expect = 9e-40
Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKK 56
MANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++GS SG +++ +
Sbjct: 104 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTR 163
Query: 57 IVVANSGQL 65
+ N G+L
Sbjct: 164 PKIVNCGEL 172
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 125 bits (316), Expect = 2e-38
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQS--GKTSKK 56
MAN+GPNTNG QFFITT K WLD ++VVFG ++ + L ++KK+E++ K
Sbjct: 161 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIP 220
Query: 57 IVVANSGQL 65
I V G+L
Sbjct: 221 INVVECGEL 229
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 116 bits (293), Expect = 6e-35
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 1 MA----NAGPNTNGSQFFIT------TVKTAWLDNRHVVFGSVVEGLDVVKKLESM-GSQ 49
+ +G S F IT + LD VV G V GLDV+ K+ SM
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 50 SGKTSKKIVVANSGQL 65
+G+ + G
Sbjct: 191 AGRKYPTFSIGKCGAY 206
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 98.6 bits (246), Expect = 3e-28
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++ +
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 97.7 bits (244), Expect = 3e-28
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++ +
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 96.5 bits (241), Expect = 9e-28
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 45
MAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E
Sbjct: 94 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEK 138
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 96.2 bits (240), Expect = 1e-27
Identities = 29/45 (64%), Positives = 37/45 (82%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 45
MANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ +
Sbjct: 110 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISN 154
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 96.6 bits (241), Expect = 2e-27
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN G ++N S+FFIT L+N+H +FG VV GLDV+++ E +
Sbjct: 107 MANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKL 152
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 94.3 bits (235), Expect = 1e-26
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
M+N GPNTN SQFFIT LD +H +F V + + ++ + S+
Sbjct: 127 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASV 172
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 92.6 bits (231), Expect = 2e-26
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE +
Sbjct: 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 91.6 bits (228), Expect = 1e-25
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +E++
Sbjct: 108 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 153
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 89.4 bits (222), Expect = 1e-24
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLES 45
MANAGP TNGSQFFIT KT L+ RH +FG V+ E VV+ +
Sbjct: 124 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISK 170
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 88.1 bits (219), Expect = 2e-24
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 1 MANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 46
MA+ G PNTNGSQFFIT L+ +V+FG +++G + + LE+
Sbjct: 105 MASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENC 154
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 87.3 bits (217), Expect = 6e-24
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLE 44
MANAG + NGSQFF T + L+N+H +FG V + + + +L
Sbjct: 113 MANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLS 157
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 78.6 bits (194), Expect = 3e-20
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 1 MANAGPN--------------TNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLES 45
+AN G + TNG+QFFIT + L+N + +FG V L + K
Sbjct: 112 VANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFND 171
Query: 46 M 46
+
Sbjct: 172 L 172
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 68.1 bits (166), Expect = 8e-16
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 1 MANAG--PNTNGSQFFITTVK-------TAWLDNRHVVFGSVVEGLDVVKKLE 44
MA ++ SQ F + + LD R+ VFG V + D + L+
Sbjct: 291 MAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 62.6 bits (153), Expect = 1e-14
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 1 MA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKK 42
MA P++ +QFFI V +L+ + VF VV+G+D V K
Sbjct: 85 MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDK 135
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 62.5 bits (153), Expect = 2e-14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 1 MA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLDVVKK 42
MA P++ +QFFI +L++ + VFG VVEG D+V K
Sbjct: 89 MARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDK 139
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 60.3 bits (147), Expect = 1e-13
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1 MA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLES 45
MA A ++ SQFFI A+LD+ + VFG VV+G+DV K+
Sbjct: 90 MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQ 140
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.0 bits (78), Expect = 0.001
Identities = 7/57 (12%), Positives = 17/57 (29%)
Query: 8 TNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVANSGQ 64
T + D +F + + + + +E+ + GK + G
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.039
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 8/24 (33%)
Query: 40 VKKLESMGSQSGKTSKKIVVANSG 63
+KKL++ S K+ +S
Sbjct: 22 LKKLQA--------SLKLYADDSA 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 892,464
Number of extensions: 38433
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 37
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)