RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy442
(66 letters)
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 81.8 bits (201), Expect = 2e-22
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTN SQFFIT V WLD +HVVFG V+EG++VV+++E G++SG + +V+
Sbjct: 106 MANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVIT 165
Query: 61 NSGQL 65
+ G+L
Sbjct: 166 DCGEL 170
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 79.9 bits (196), Expect = 2e-21
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGLDVVK +ES GSQSGK K ++A
Sbjct: 107 MANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIA 166
Query: 61 NSGQL 65
+ GQL
Sbjct: 167 DCGQL 171
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 78.8 bits (193), Expect = 3e-21
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E+ GS+ GK +K+++A
Sbjct: 98 MANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIA 157
Query: 61 NSGQ 64
+ G+
Sbjct: 158 DCGE 161
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 78.0 bits (191), Expect = 8e-21
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+ES GS+SG+TSKKIV+
Sbjct: 99 MANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT 158
Query: 61 NSGQLS 66
+ GQLS
Sbjct: 159 DCGQLS 164
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 75.3 bits (184), Expect = 1e-19
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAG NTNGSQFFITTV T LD +HVVFG V++G+ V K LE++ + K +K V+A
Sbjct: 119 MANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIA 178
Query: 61 NSGQLS 66
G+L
Sbjct: 179 ECGELK 184
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 74.0 bits (181), Expect = 2e-19
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVVA 60
MANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK +E+ GS SGK +I +A
Sbjct: 98 MANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIA 157
Query: 61 NSG 63
G
Sbjct: 158 KCG 160
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 73.3 bits (179), Expect = 4e-19
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MANAGPN+NGSQFF+TT T WLD RHVVFG VVEG+DVVKK+E+ + + K K + +
Sbjct: 101 MANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160
Query: 60 ANSGQL 65
+ G L
Sbjct: 161 NDCGVL 166
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 73.4 bits (179), Expect = 4e-19
Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMGSQSG--KTSKK 56
MANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++GS SG +++ +
Sbjct: 103 MANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTR 162
Query: 57 IVVANSGQL 65
+ N G+L
Sbjct: 163 PKIVNCGEL 171
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 73.0 bits (178), Expect = 8e-19
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVV 59
MAN+GP+TNG QFFIT K WLD +HVVFG +++GL V++K+E++ + + K +V+
Sbjct: 108 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 167
Query: 60 ANSGQL 65
+ G++
Sbjct: 168 SQCGEM 173
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 70.2 bits (171), Expect = 7e-18
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MAN GPNTNGSQFFITT L+N HVVFG VV G +VV K+E + + S + +V+
Sbjct: 108 MANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 167
Query: 60 ANSGQL 65
N G+L
Sbjct: 168 LNCGEL 173
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 69.1 bits (168), Expect = 3e-17
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG--LDVVKKLESM--GSQSGKTSKK 56
MAN+GPNTNG QFFITT K WLD ++VVFG +++ L ++KK+E++ K
Sbjct: 118 MANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIP 177
Query: 57 IVVANSGQL 65
I V G+L
Sbjct: 178 INVVECGEL 186
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 64.1 bits (155), Expect = 2e-15
Identities = 38/67 (56%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSKKIVV 59
MANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+K+E G + + +++
Sbjct: 103 MANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII 162
Query: 60 ANSGQLS 66
A SG ++
Sbjct: 163 AASGHIA 169
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 63.3 bits (153), Expect = 5e-15
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E + + +
Sbjct: 104 MANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI 163
Query: 60 ANSGQL 65
NSG++
Sbjct: 164 VNSGKI 169
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 59.8 bits (144), Expect = 6e-14
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE + ++ + +
Sbjct: 89 MANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVH 148
Query: 59 VAN 61
+ +
Sbjct: 149 IKD 151
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 57.4 bits (138), Expect = 7e-13
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +E++ ++ + ++I
Sbjct: 89 MANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIR 148
Query: 59 V 59
+
Sbjct: 149 I 149
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 56.1 bits (134), Expect = 2e-12
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM--GSQSGKTSKKIV 58
MANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++ ++ K + +
Sbjct: 98 MANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVS 157
Query: 59 VAN 61
+ N
Sbjct: 158 IIN 160
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 56.3 bits (135), Expect = 2e-12
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVV 59
MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++ + + S + + +
Sbjct: 100 MANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 55.6 bits (133), Expect = 3e-12
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
M+N GPNTN SQFFIT LD +H +F V + + ++ + S+ + + K + +
Sbjct: 105 MSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 164
Query: 60 ANSG 63
+
Sbjct: 165 LRTS 168
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 55.3 bits (132), Expect = 4e-12
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVV 59
MAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E + + K + I +
Sbjct: 90 MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKI 149
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 48.7 bits (115), Expect = 1e-09
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGLDVVKKLESMGSQSGKTSKKIV 58
MANAGP TNGSQFFIT KT L+ RH +FG V+ E VV+ + + V
Sbjct: 104 MANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPV 163
Query: 59 VANSGQLS 66
V S +S
Sbjct: 164 VIESITIS 171
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 44.9 bits (105), Expect = 3e-08
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 6 PNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEGLDVVKKLESM-----GSQSGKTSK 55
++ SQFFI A+LD+ + VFG VV+G+DV K+ + G SK
Sbjct: 96 KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSK 155
Query: 56 KIVVANSGQL 65
+V+ ++ L
Sbjct: 156 PVVILSATVL 165
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 44.1 bits (103), Expect = 7e-08
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 1 MANAGPNTNGSQFFITTVKTAWL--------DNRHVVFGSVVEGLDVVKKLESMGSQSGK 52
P++ +QFFI V +L + VF VV+G+D V K++ + +
Sbjct: 86 ARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSG 145
Query: 53 TSK 55
+
Sbjct: 146 MHQ 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.347
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 209,949
Number of extensions: 6655
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 22
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.5 bits)