BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4420
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
+ Y C C + S++ + H HT EK + C C + D+ +H R HTGEKP+K
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 99 CQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNC 156
C C + + +LR H +TH G + Y C C K F + L H H Y C
Sbjct: 80 CPECGKSFSQRANLRAHQRTH---TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 157 EVCEKVFDKIEEFENH 172
C K F + + H
Sbjct: 137 PECGKSFSREDNLHTH 152
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
+ Y C C + SQ ++ H HT EK +AC C + + ++ H R HTGEKP+K
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 99 CQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
C C + + +L H +TH G + Y C C K F + L+ H H
Sbjct: 136 CPECGKSFSREDNLHTHQRTH---TGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGR 125
EK +AC C + + + +H R HTGEKP+KC C + +D K L H +TH G
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH---TGE 75
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENH 172
+ Y C C K F ++ L H H Y C C K F ++ H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 93 GEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNL 152
GEKP+ C C + + S L H +TH G + Y C C K F K L H H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTH---TGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 153 N--YNCEVCEKVFDKIEEFENH 172
Y C C K F + H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAH 96
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ Y C C + S+ + H HT EK + C C + + + H R HTG+K
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 120 AKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENH 172
A E G + Y C C K F L H H Y C C K F ++ H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
++ + C +C + S+ K+K H HT K + C CDY +A + + KH R H+ E+P
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKENG 124
FKCQICPYA+ +S L VH ++H ++G
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSG 92
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 84 VKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKL 143
+K H R HTG KP+KC+ C YAAADS SL H + H+ E R + C IC S+L
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE---RPFKCQICPYASRNSSQL 80
Query: 144 DFHVNLHN 151
H+ H
Sbjct: 81 TVHLRSHT 88
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 12 ICSFCLEEVDNSALKMFEHNCDGVLNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFAC 71
+C C D M H + Y C C + + + +H H+ E+ F C
Sbjct: 13 VCGKCFSRKDKLKTHMRCHT-----GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 72 SHCDYKSAYINDVKKHTRKHTGE 94
C Y S + + H R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 96 PFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN--LN 153
P KC++C + L+ H + H G + Y C C S L+ H+ +H+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH---TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 154 YNCEVCEKVFDKIEEFENHL 173
+ C++C + HL
Sbjct: 65 FKCQICPYASRNSSQLTVHL 84
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
+ Y C C + SQ+ +++H HT EK + C C + +D++KH R HTGEKP+K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 99 CQICPYAAADSKSLRVHYKTH 119
C C + + S L H +TH
Sbjct: 63 CPECGKSFSRSDHLSRHQRTH 83
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGR 125
EK + C C + ++++KH R HTGEKP+KC C + + S L+ H +TH G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT---GE 58
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLHN 151
+ Y C C K F L H H
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 36 LNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ Y C C + SQ+ +++H HT EK + C C + + + +H R H +K
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + D+ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S++ + RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S L H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + ++ H R HTG+KPF+C+IC + SL H +TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT--- 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F T H +H
Sbjct: 59 GEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ SQ + H HT +K F C C + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A + H K H ++
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + SQ + H HT EK FAC C K A ++ +HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + +L H + H G++ + C IC + F ++ L+ H+ H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT---GQKPFQCRICMRNFSQQASLNAHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + H
Sbjct: 59 GEKPFACDICGRKFATLHTRTRH 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ SQ+ + RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + + +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S SL H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + ++ H R HTG+KPF+C+IC + L H +TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT--- 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F T D H +H
Sbjct: 59 GEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ SQ + H HT +K F C C + + +H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A + H K H ++
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + SQ + +H HT EK FAC C K A ++ +HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S++ ++ RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S L H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 57
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 58 GEKPFACDICGRKFARSDERKRHTKIH 84
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S++ ++ RH HT +K F C C + + + H R HTGEKP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 62 FACDICGRKFARSDERKRHTKIHLRQ 87
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S L H + H G++ + C IC + F L H+ H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 58 GEKPFACDICGRKFARSDERKRH 80
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 21 DNSALKMFEHNCDGVLNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACS--HCDYKS 78
DNSA++ H R + C C + ++ K+KRH L HT EK F C+ C +
Sbjct: 19 DNSAMRKHLH----THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF 74
Query: 79 AYINDVKKHTRKHTGEKPFKCQICPYAA-----ADSKSLRVHYKTHAK 121
+ +++ H R HTG++P+ +CP+ A S +L+ H THAK
Sbjct: 75 SLDFNLRTHVRIHTGDRPY---VCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC--QICPYAAADSKSLRVH 115
R +L + C+ C + +K+H HTGEKPF+C + C + +LR H
Sbjct: 24 RKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 116 YKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
+ H G R Y C C+K+F + L H+ H
Sbjct: 84 VRIHT---GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
+ C +C + ++ + H L H+ + + C +C + +D+KKHT HTGEKP KCQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 101 ICPYAAADSKSLRVHYKTHA 120
+C A + S +L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--Y 154
F C+IC + S +L H H+ R Y C C KRF+ KS + H +H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT---RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 155 NCEVCEKVFDKIEEFENH 172
C+VC K F + H
Sbjct: 59 KCQVCGKAFSQSSNLITH 76
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTG 93
+ R Y C C ++ Q +K+H HT EK C C + +++ H+RKHTG
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 69 FACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVY 128
F C C + + H H+ +P+ CQ C ++ H H G + +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---TGEKPH 58
Query: 129 HCTICSKRFYTKSKLDFHVNLHN 151
C +C K F S L H H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHT 81
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 56 IKRHYLKHTQEKFFAC--SHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLR 113
++ H KHT EK + C C+ + + + +K+H R+HTG KPF+C+ C + S L+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 114 VHYKTHAKENGRRVYHC--TICSKRFYTKSKLDFHVNLH 150
H +TH G + + C C K+F +L H N+H
Sbjct: 84 THTRTHT---GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 46 CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQI--CP 103
C+++ S++ ++KRH +HT K F C C K + + +K HTR HTGEKPF C+ C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 104 YAAADSKSLRVHYKTH 119
A S L H+ H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 33/113 (29%)
Query: 64 TQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAK 121
++++ F C++ C+ + ++ ++ H+RKHTGEKP++C
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF-------------------- 41
Query: 122 ENGRRVYHCTICSKRFYTKSKLDFHVNLHNL--NYNCEVCEKVFDKIEEFENH 172
C +RF +L H H + C+ C++ F + + + H
Sbjct: 42 ---------KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S++ ++ RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAK 121
F C IC A S + H K H +
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLR 87
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT--- 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S + + RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C +DS +L H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + ++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R Y C + C ++ S++ ++ RH HT +K F C C + + + H R HTGEKP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C IC A S + H K H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S L H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVFDKIEEFENH 172
+ C++C + F + +E + H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ + C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 84 VKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKL 143
+K H RKHTGEKPF+C C ++L H + +V+ C++C + F + +L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 144 DFHVNLHN--LNYNCEVCEKVFDKIEEFENHLSDNH 177
H+ H + Y C C + F + ++ ++H+ H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 34 GVLNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCD---YKSAYINDVKKHTRK 90
G + C C +K + +K H KHT EK F C C ++ + + +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH-VNL 149
+ E+ F C +C LR+H +H G Y C+ CS++F K L H + L
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHT---GEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 150 HN 151
H+
Sbjct: 118 HS 119
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 27 MFEHNCDGVLNARK--YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDV 84
+ EH +N + +TC +C++ + +++ H + HT E + CS C + D+
Sbjct: 51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Query: 85 KKHTRK-HTG 93
+ H K H+G
Sbjct: 111 QSHMIKLHSG 120
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 56 IKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLR 113
+K H HT EK + C+ CD++ A +++ +H RKHTG KPF+C +C + + S L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 114 VHYKTH 119
+H K H
Sbjct: 93 LHMKRH 98
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 84 VKKHTRKHTGEKPFKC--QICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKS 141
+K H R HTGEKP+KC + C + A S L HY+ H G + + C +C++ F
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH---TGAKPFQCGVCNRSFSRSD 89
Query: 142 KLDFHVNLHN 151
L H+ H
Sbjct: 90 HLALHMKRHQ 99
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 71 CSHCD--YKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAK 121
CS+C ++S Y ++ H R HTGEKP+KC+ C YAAA SLR H + H K
Sbjct: 7 CSYCGKFFRSNYYLNI--HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 130 CTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENHLSDNH 177
C+ C K F + L+ H+ H Y CE CE + HL +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 46 CKQKESQAWKIKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICP 103
C + +++ +K H HT EK + C C +K A +++ +H RKHTG +PF+CQ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 104 YAAADSKSLRVHYKTH 119
A + S L +H K H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 84 VKKHTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKS 141
+K H R HTGEKP+ C C + A S L HY+ H G R + C C + F
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---TGHRPFQCQKCDRAFSRSD 80
Query: 142 KLDFHVNLH 150
L H+ H
Sbjct: 81 HLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 46 CKQKESQAWKIKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICP 103
C + +++ +K H HT EK + C C +K A +++ +H RKHTG +PF+CQ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 104 YAAADSKSLRVHYKTH 119
A + S L +H K H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 84 VKKHTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKS 141
+K H R HTGEKP+ C C + A S L HY+ H G R + C C + F
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---TGHRPFQCQKCDRAFSRSD 79
Query: 142 KLDFHVNLH 150
L H+ H
Sbjct: 80 HLALHMKRH 88
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGE 94
++Y C C ++ WK++ H KHT EK F C C+ ++ + +H+ HTGE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTI---------CSKRFYTKSKLDF 145
K F C +D LR K + K++ R ++ I C K F ++L
Sbjct: 71 KNFTCD------SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 146 HVNLH--NLNYNC--EVCEKVFDKIEEFENH 172
H H L Y C E C+K F + H
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
+G C+IC D L H +H+ E + Y C +C RF K ++ +HV H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 152 LN----YNCEVCEKVFDKIEEFENHLSDNH 177
+ Y C+ C K F + + H+ H
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 34 GVLNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTG 93
G + C +C + + + RH L H+ EK ++C C + + + H R H G
Sbjct: 1 GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 94 E--KPFKCQICPYAAADSKSLRVHYK 117
KP+ CQ C + L H K
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 84 VKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKL 143
+ +H H+GEKP+ C +C + H ++H G + Y C C K F L
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KPYICQSCGKGFSRPDHL 81
Query: 144 DFHV 147
+ H+
Sbjct: 82 NGHI 85
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 67 KFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHA 120
+ +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 27 MFEHNCDGVLN-----ARKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSA 79
M H + +LN R Y C + C ++ S++ ++ RH HT +K F C C +
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 80 YINDVKKHTRKHT 92
+ + H R HT
Sbjct: 61 RSDHLTTHIRTHT 73
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
+++ C C + ++++ + H HT E+ + C C + ++ H H+ EKPFK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 99 CQICPYAAADSKSLRVHYKTHAKENG 124
CQ C S++L VH H + +
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGR 125
+K F C C ++ H R HT E+P+ C IC A LR H H+KE
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE--- 71
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLH 150
+ + C C K F L H LH
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN 153
+K F C+ C S +L +H +TH E R Y C IC K F + L H +H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDE---RPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 154 --YNCEVCEKVF 163
+ C+ C K F
Sbjct: 72 KPFKCQECGKGF 83
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 65 QEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
+ + + C C ++ +D+ KH R HTGEKP+KC C A L H++ H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
R+Y C C + S + + +H HT EK + C C + + H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 125 RRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVF 163
RR Y C C K F S L H H Y C+ C K F
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 46 CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYIN--DVKKH-TRKHTGEKPFKCQI- 101
C++ S+ +K H HT EK + C H A+ N D KH R H+ EKP+ C++
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 102 -CPYAAADSKSLRVHYKT 118
C D SLR H KT
Sbjct: 135 GCTKRYTDPSSLRKHVKT 152
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 59 HYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKC--QICPYAAADSKSLRV 114
H +HT EK C+ C + + ++K H R HTGEKP+ C + C A +++
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 115 HY-KTHAKENGRRVYHCTI--CSKRFYTKSKLDFHV 147
H +TH+ E + Y C + C+KR+ S L HV
Sbjct: 118 HQNRTHSNE---KPYVCKLPGCTKRYTDPSSLRKHV 150
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 54 WKIKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKPFKCQI--CPYAAADS 109
+K+ H HT EK F C C A ++K H R HTGEKPFKC+ C A+S
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135
Query: 110 KSLRVHYKTHAKE 122
+ H H +
Sbjct: 136 SDRKKHMHVHTSD 148
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 56 IKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEK 95
+K H HT EK F C CD + A +D KKH HT +K
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+K + C C Y ++ H HTGEKP++C IC +L+ H + H+ E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
+ Y C C+ + H HT EK + C+ C + ++K HTR H+GEKP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
+KP+KC C + +L H H G + Y C IC +F + L H +H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHT---GEKPYRCNICGAQFNRPANLKTHTRIHS 69
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGE 94
++Y C C ++ WK++ H KHT EK F C C+ ++ + +H+ HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVY 128
K F C +D LR K + K++ R +
Sbjct: 62 KNFTCD------SDGCDLRFTTKANMKKHFNRFH 89
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 67 KFFACSHCDYKSAYINDVK--KHTRKHTGEKPFKC--QICPYAAADSKSLRVHYKTHAKE 122
K + CS D +AY + K H KHTGEKPF C + C L H TH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-- 59
Query: 123 NGRRVYHCTI--CSKRFYTKSKLDFHVN-LHNL 152
G + + C C RF TK+ + H N HN+
Sbjct: 60 -GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
Y C++CK+ ++RH+ H+ EK + C +C+ KH HTGE+ ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 101 ICPYAAADSKSLRVHYKT 118
C + + + + H K+
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENH 172
+GR Y C +C + + + L H N+H+ Y C CEKVF E H
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 68 FFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICP--YAAADSKSLRVHYKTHAKENGR 125
++ C C + +++H H+ EK + C+ C + A+ ++ K G
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT-----KHEIHHTGE 76
Query: 126 RVYHCTICSKRFYTKSKLDFHV 147
R Y C C K F + H+
Sbjct: 77 RRYQCLACGKSFINYQFMSSHI 98
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
EK + C C + + + +H R HTGEKP+KC C A + + L H + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
EKP+ C C A + S L H + H G + Y C C K F S L H +H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVH---TGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHT 92
+ Y C+ C + S++ + +H HT EK + C C + + + H R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLHNL--NYNCEVCEKVFDKIEEFENHLSD 175
G R Y C +C K+F K L H+ +H Y C +C K F + F H++
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
+ +K + C C + + +H H G +P+ C +C L H K H
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH---T 61
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVN 148
G + Y C IC+KRF + HV
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHVT 86
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQIC 102
RH H + + C C K + + H + HTG KP++C IC
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLNY 154
KPF+C+IC + S L H +TH G + + C IC ++F + H ++ ++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT---GEKPFACDICGRKFARSDERKRHRDIQHILP 58
Query: 155 NCEVCEKVFDKIEEF 169
E DK+EE
Sbjct: 59 ILE------DKVEEL 67
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVH 115
K F C C + + + H R HTGEKPF C IC A S + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKH 87
+ + C +C + S++ + H HT EK FAC C K A ++ K+H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENHLSDNHIFTYDHGT 185
+ C IC + F L H+ H + C++C + F + +E + H HI
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP----I 59
Query: 186 KDDKLEKL 193
+DK+E+L
Sbjct: 60 LEDKVEEL 67
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV 147
R H+GEKP++C IC S ++++H EN + +HC C KS L H+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDLGVHL 65
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYL-KHTQEKF-FACSHCDYKSAYINDVKKHTRK 90
+ Y C +C + +Q+ +K H L KHT+ F C HCD A +D+ H RK
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 71 CSHCDYKSAYIND--VKKHTRKHTGEKPFKC--QICPYAAADSKSLRVHYKTH 119
CSH Y +K HTR HTGEKPF C + C A S L H +TH
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.9 bits (76), Expect = 0.076, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
+GEKP+ CQ C A S L +H + H E+G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.095, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEKPF C C A + L VH +THA+E
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 69 FACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYA 105
F C C A +K+H R HT EKP+ C +C A
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRA 39
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVN-LHNLNYN 155
F C++C A A + L+ HY++H E + Y C +C++ F + L H +H+ N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE---KPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRK-HTG 93
+ C +C + ++ +KRHY HT EK + C C+ + + +H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHN-----LNYNCEVCEKVFDKIEEFENHLSDNH 177
+G C IC K+ L++H H L + CE C K F+K + H S +H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH 146
+G +C+IC + SL H + HA+ + C C KRF + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
E+PF C C D+ L H + H G R C C K F +S+++ H+ +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHL---GYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
E+ F C+ C + + +H R H G +P C C D + H K H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.24, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
+GEKP++C C A L +H +TH E+G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G + Y CT C K F KS+L H H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C Y +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 123 NGRRVYHCTICSKRFYTKSK-LDFHVNLHNLNYNCEVCEKVF----DKIEEFENHL---- 173
+G R+++ ++ + F T +K L L + YN + EK F D E +N L
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168
Query: 174 SDNHIFTYDHGTKDDKLEKLSA 195
DN +F DH + ++ ++A
Sbjct: 169 DDNQLFRIDHYLGKEMVQNIAA 190
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 123 NGRRVYHCTICSKRFYTKSK-LDFHVNLHNLNYNCEVCEKVF----DKIEEFENHL---- 173
+G R+++ ++ + F T +K L L + YN + EK F D E +N L
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168
Query: 174 SDNHIFTYDHGTKDDKLEKLSA 195
DN +F DH + ++ ++A
Sbjct: 169 DDNQLFRIDHYLGKEMVQNIAA 190
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 123 NGRRVYHCTICSKRFYTKSK-LDFHVNLHNLNYNCEVCEKVF----DKIEEFENHL---- 173
+G R+++ ++ + F T +K L L + YN + EK F D E +N L
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168
Query: 174 SDNHIFTYDHGTKDDKLEKLSA 195
DN +F DH + ++ ++A
Sbjct: 169 DDNQLFRIDHYLGKEMVQNIAA 190
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 123 NGRRVYHCTICSKRFYTKSK-LDFHVNLHNLNYNCEVCEKVF----DKIEEFENHL---- 173
+G R+++ ++ + F T +K L L + YN + EK F D E +N L
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168
Query: 174 SDNHIFTYDHGTKDDKLEKLSA 195
DN +F DH + ++ ++A
Sbjct: 169 DDNQLFRIDHYLGKEMVQNIAA 190
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
T EKP++C C A + L VH +TH+ E+G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESG 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
KPFKC +C YA +L+ H H+ E
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 93 GEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNL 149
GE ++C++C + HY T K N + VY C C K F K + HV +
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK-VYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 69 FACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHA 120
+ C C + + +KKH R HT +P+ C C ++ +L H K+ A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 99 CQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV 147
C+ C L+ H +TH R YHCT C+ F TK L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDV---RPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 0.57, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K + C C Y SA ++ H RKHTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.4 bits (67), Expect = 0.76, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
KP+KC C YA+A +L VH + H E
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHA 120
EKPF C +CP + D ++ H +TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTHG 27
>pdb|1EJ6|B Chain B, Reovirus Core
pdb|1EJ6|C Chain C, Reovirus Core
pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1275
Score = 30.4 bits (67), Expect = 0.66, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLNYN-----CEVCEKVFDKIEEFENH 172
Y C +CS ++ LD HV H L+ N E+ + + I ++NH
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNH 230
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
+G + Y C +C RF K ++ +HV H+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C + +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.4 bits (67), Expect = 0.80, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G+RVY C C K F K L H +H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN-GRRVYHCTICSKRFYTKSKLDFHV 147
R HTGEKP+ C C + L +H+K + N + C+ C K F ++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 148 N 148
+
Sbjct: 68 D 68
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 123 NGRRVYHCTICSKRFYTKSK-LDFHVNLHNLNYNCEVCEKVF----DKIEEFENHL---- 173
+G R+++ ++ + F T +K L L + YN + EK F D E +N L
Sbjct: 109 DGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAF 168
Query: 174 SDNHIFTYDHGTKDDKLEKLSA 195
DN +F +H + ++ ++A
Sbjct: 169 DDNQLFRINHYLGKEMVQNIAA 190
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
+GE P++C C A L H +THA E+G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESG 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK F C+ C + + + H R HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKE 29
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
EKP++C C A +L VH +TH E+G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK + C +C ++ +H R HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKE 29
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTH 119
+GEKP++C+ C + + SL VH + H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKE 122
EKP+KCQ+C A S L H+ H+ E
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHA 120
EKP++C +C A + +SL VH + H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
T EK F C CD + + H HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 26.6 bits (57), Expect = 9.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
T EKPF+C C + +L H H E
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 88 TRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TR TG KPF+C C + + S L +H K H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK + C C A ++ +H R HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 66 EKFFACS--HCDYKSAYINDVKKHTRKHTGEKP 96
EK FAC+ C ++ + +++ +H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K F C C K + + +K HTR HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
KPF+C+ C + S L+ H +TH E
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKE 122
EKPFKC C + +L VH+K H E
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK + C+ C + + + +H R HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK F CS C +++ H R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKE 122
EKP+KC C A SL +H TH+ E
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
+G+KP+ C C A L +H + H E+G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESG 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK F C C + + + H R HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLHN 151
R Y C++C KRF K +++ H +H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK + C+ C + + + H R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
E+ + CS C A + + H R HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 27.3 bits (59), Expect = 6.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTH 119
TG KPF+C C ++ + S L +H K H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK F C C + + + H R HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 66 EKFFACSHCDYKSAYIND--VKKHTRKHTGEKP 96
EK + C C A+I+D +++H R HTGEKP
Sbjct: 10 EKPYNCEECG--KAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 7.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLH 150
Y C+IC K F KS+L H +H
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIH 35
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKE 122
F C++C A A ++L+ HY++H E
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNE 28
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 26.9 bits (58), Expect = 7.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTH 119
EKP++C C A + SL VH + H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G + Y C+ C K F KS+L H +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
T E PFKC C + S L H HA EN
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
K + C+ C + + + +H R HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 9.5, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
EK CS C ++ + + H R HTGE P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.6 bits (57), Expect = 9.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKE 122
EKP+ C +C A S L H + H +E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.6 bits (57), Expect = 9.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K + C HC + A +++H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 55 KIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTG 93
++K H HTQ+ + C H CD + + + +K+H + H G
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,665,031
Number of Sequences: 62578
Number of extensions: 269360
Number of successful extensions: 1262
Number of sequences better than 100.0: 167
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 496
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)