RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4420
(213 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 32.4 bits (74), Expect = 0.009
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 83 DVKKHTRKHTGEKPFKCQICPYA 105
++++H R HTGEKP+KC +C +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 26.6 bits (59), Expect = 1.3
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 57 KRHYLKHTQEKFFACSHCDYKSAY 80
+RH HT EK + C C +
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 111 SLRVHYKTHAKENGRRVYHCTICSKRFYT 139
+LR H +TH E + Y C +C K F +
Sbjct: 1 NLRRHMRTHTGE---KPYKCPVCGKSFSS 26
>gnl|CDD|224178 COG1258, COG1258, Predicted pseudouridylate synthase [Translation,
ribosomal structure and biogenesis].
Length = 398
Score = 33.1 bits (76), Expect = 0.082
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 155 NCEVCEKVFDKIEEF----ENHLSDNHIFTYDHGTKDDKLEKLSAEMLYQE 201
C +C +FD++EEF L + T+ G++ + K + +++E
Sbjct: 61 PCYICGGIFDRVEEFADLVAKLLKELEFSTFVVGSRVPEEVKEAESEIWEE 111
>gnl|CDD|117250 pfam08677, GP11, GP11 baseplate wedge protein. GP11 is a viral
structural protein that connects short tail fibres to
the baseplate. The tail region is responsible for
attachment to the host bacteria during infection.
Length = 218
Score = 31.6 bits (72), Expect = 0.18
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 157 EVCEKVFDKIEEFENHLSDNHIFTY-DHGTKDDKLE 191
E CEKV E + + GT KLE
Sbjct: 123 EFCEKVRTAFTEAIA--NSIAFDSVKRDGTDGSKLE 156
>gnl|CDD|222889 PHA02583, 11, baseplate wedge subunit and tail pin; Provisional.
Length = 218
Score = 31.6 bits (72), Expect = 0.21
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 157 EVCEKVFDKIEEFENHLSDNHIF--TYDHGTKDDKLE 191
EVCEKV K E + F GT KLE
Sbjct: 123 EVCEKVLTKFTEMVA---KSIYFAEVSRKGTDGPKLE 156
>gnl|CDD|203088 pfam04780, DUF629, Protein of unknown function (DUF629). This
family represents a region of several plant proteins of
unknown function. A C2H2 zinc finger is predicted in
this region in some family members, but the spacing
between the cysteine residues is not conserved
throughout the family.
Length = 463
Score = 30.5 bits (69), Expect = 0.68
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 156 CEVCEKVFDKIEEFENHLSDNH 177
C C K F EE +NHL H
Sbjct: 60 CRTCSKKFSSSEECKNHLEQEH 81
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 30.0 bits (67), Expect = 1.1
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 33/159 (20%)
Query: 29 EHNCDGVLNARKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKK 86
E D + + + C C ++ ++K+HY Q F CS C
Sbjct: 140 EDVRDEMEDLLSFKCPKSKCHRRCGSLKELKKHY--KAQHGFVLCSEC------------ 185
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVY-HCTICSKRFYTKSKLDF 145
+K F +I + S +LR H +E G + + C C FY +L
Sbjct: 186 ----IGNKKDFWNEIRLFR---SSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRR 238
Query: 146 HVNLHNLNYNCEVCEKV-------FDKIEEFENHLSDNH 177
H L + C +C+ V F E+ E H + H
Sbjct: 239 HCRLR--HEACHICDMVGPIRYQYFKSYEDLEAHFRNAH 275
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.3 bits (63), Expect = 1.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 96 PFKCQICPYAAADSKSLRVH--YKTHAKENGRRVYHCTICSKRFY-TKSKLDFHVNLHNL 152
P+ C +C + S SL+ H Y H+K C +C K F T S LD HN+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV-------CPVCGKEFRNTDSTLDHVCKKHNI 125
Score = 26.4 bits (58), Expect = 6.9
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLNYNCEVCEKVFDKIEEFENHLSDNH 177
Y C +C F + L H+ + C VC K F + +H+ H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding
domain of flavohemoglobin. Flavohemoglobins have a
globin domain containing a B-type heme fused with a
ferredoxin reductase-like FAD/NAD-binding domain.
Flavohemoglobins detoxify nitric oxide (NO) via an NO
dioxygenase reaction. The hemoglobin domain adopts a
globin fold with an embedded heme molecule.
Flavohemoglobins also have a C-terminal reductase
domain with bindiing sites for FAD and NAD(P)H. This
domain catalyzes the conversion of NO + O2 + NAD(P)H to
NO3- + NAD(P)+. Instead of the oxygen transport
function of hemoglobins, flavohemoglobins seem to act
in NO dioxygenation and NO signalling.
Length = 247
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 9 SKLICSFCLEEVDNSALKMFEHNCDGVLNARKYTCLLCKQKESQAWKIKRHY 60
S+ I SF LE D L F +Y + K +I R Y
Sbjct: 18 SEDITSFYLEPADGGPLPPFL--------PGQYLSVRVKLPGLGYRQI-RQY 60
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.5 bits (56), Expect = 2.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLH 150
Y C C K F +KS L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.7 bits (54), Expect = 5.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 97 FKCQICPYAAADSKSLRVHYKTH 119
++C C +LR H +TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 28.6 bits (64), Expect = 3.0
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 128 YHCTICSKRFYTKSKLDFHVNL 149
Y C +C F + +L H
Sbjct: 74 YVCNVCMAEFSSMDQLAEHQRT 95
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 25.8 bits (56), Expect = 4.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLNYNCEVCEKVFDKIEEF 169
Y C IC + + + + H+ HN N C+++ + E+
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEY 47
>gnl|CDD|233315 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/55) synthase.
Members of this family show twilight-zone similarity to
several predicted RNA pseudouridine synthases. All
trusted members of this family are archaeal. Several
eukaryotic homologs lack N-terminal homology including
two CXXC motifs [Hypothetical proteins, Conserved].
Length = 388
Score = 27.8 bits (62), Expect = 4.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 155 NCEVCEKVFDKIEEF 169
C+VC +FD+ +E
Sbjct: 55 PCDVCGGIFDRFDEA 69
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 27.8 bits (61), Expect = 5.4
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 93 GEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGR-----------------RVYHCTIC 133
KP+KC + C + L+ H H +N + + Y C +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYH-MLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVC 404
Query: 134 SKRFYTKSKLDFH 146
KR+ + L +H
Sbjct: 405 DKRYKNLNGLKYH 417
>gnl|CDD|237754 PRK14554, PRK14554, putative pseudouridylate synthase; Provisional.
Length = 422
Score = 26.8 bits (60), Expect = 8.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 155 NCEVCEKVFDKIEEF 169
C +C +FD+I+EF
Sbjct: 87 RCYICGGIFDEIDEF 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,195,032
Number of extensions: 885459
Number of successful extensions: 975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 64
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)