RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4420
(213 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 68.2 bits (167), Expect = 1e-15
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G +C+IC + SL H + HA+ + C C KRF + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 53.6 bits (129), Expect = 3e-10
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHT---GEKPFKCQICPYAAADSKSLRVHYKTH 119
+ C C + + H RKH F C+ C S+ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 120 AKE 122
Sbjct: 62 HPA 64
Score = 42.8 bits (101), Expect = 3e-06
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQ---EKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
C +C Q + H KH + F C C + + V H K
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 96 PFKCQICP 103
Q
Sbjct: 66 LLAPQESS 73
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.4 bits (158), Expect = 2e-14
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 62 KHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+ CS C Y + ++ H R H ++PFKC C + +L H K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 61.4 bits (150), Expect = 3e-13
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVN 148
+ P KC C Y+ + +LR+H + H R + C CS S L H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHC---TDRPFKCNYCSFDTKQPSNLSKHMK 58
Query: 149 LH 150
Sbjct: 59 KF 60
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
C C S ++ H H ++ F C++C + + +++ KH +K G+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 64.1 bits (157), Expect = 4e-14
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 85 KKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLD 144
R H+GEKP++C IC S ++++H EN +HC C KS L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN-VAKFHCPHCDTVIARKSDLG 62
Query: 145 FHV 147
H+
Sbjct: 63 VHL 65
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 57 KRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGE--KPFKCQICPYAAADSKSLRV 114
H+ EK + C C + +K H + E F C C A L V
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 115 HYKTH 119
H +
Sbjct: 64 HLRKQ 68
Score = 43.3 bits (103), Expect = 2e-06
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKF--FACSHCDYKSAYINDVKKHTRK-HTGEKPF 97
Y C +C + +Q+ +K H L+ E F C HCD A +D+ H RK H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 64.4 bits (158), Expect = 5e-14
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
C C + + +K H R HTG KP+KC+ C YAAADS SL H + H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLH 150
R + C IC S+L H+ H
Sbjct: 63 ---RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 56.3 bits (137), Expect = 5e-11
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
+ C +C + S+ K+K H HT K + C CDY +A + + KH R H+ E+PFKCQ
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 101 ICPYAAADSKSLRVHYKTH 119
ICPYA+ +S L VH ++H
Sbjct: 69 ICPYASRNSSQLTVHLRSH 87
Score = 50.9 bits (123), Expect = 5e-09
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
P KC++C + L+ H + H G + Y C C S L+ H+ +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH---TGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 151 NLN--YNCEVCEKVF 163
+ + C++C
Sbjct: 60 SDERPFKCQICPYAS 74
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 61.8 bits (151), Expect = 9e-13
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ C C K +K H RKHTGEKPF+C C ++L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVF 163
+V+ C++C + F + +L H+ H Y C C + F
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Score = 60.6 bits (148), Expect = 2e-12
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRK---HTGEKPF 97
C C +K + +K H KHT EK F C C ++ +H + + E+ F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 98 KCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH 146
C +C LR+H +H G Y C+ CS++F K L H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSH---TGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 30.9 bits (71), Expect = 0.12
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKH-TRKHTGEK 95
+TC +C++ + +++ H + HT E + CS C + D++ H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 62.8 bits (154), Expect = 1e-12
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
Y C C + S++ + H HT EK + C C + D+ +H R HTGEKP+KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 101 ICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEV 158
C + + +LR H +TH G + Y C C K F + L H H Y C
Sbjct: 82 ECGKSFSQRANLRAHQRTH---TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 159 CEKVF 163
C K F
Sbjct: 139 CGKSF 143
Score = 60.9 bits (149), Expect = 5e-12
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
Y C C + SQ ++ H HT EK +AC C + + ++ H R HTGEKP+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 101 ICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH 146
C + + +L H +TH G + Y C C K F + L+ H
Sbjct: 138 ECGKSFSREDNLHTHQRTH---TGEKPYKCPECGKSFSRRDALNVH 180
Score = 59.0 bits (144), Expect = 3e-11
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
EK +AC C + + + +H R HTGEKP+KC C + +D K L H +TH
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH--- 72
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVF 163
G + Y C C K F ++ L H H Y C C K F
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115
Score = 52.8 bits (128), Expect = 6e-09
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
GEKP+ C C + + S L H +TH G + Y C C K F K L
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH---TGEKPYKCPECGKSFSDKKDLTR 67
Query: 146 HVNLHNLN--YNCEVCEKVF 163
H H Y C C K F
Sbjct: 68 HQRTHTGEKPYKCPECGKSF 87
Score = 32.4 bits (75), Expect = 0.058
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
Y C C + S+ + H HT EK + C C + + + H R HTG+K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 57.6 bits (140), Expect = 2e-11
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGE 94
R + C C + +++ +K H HT EK + C+ CD++ A +++ +H RKHTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 95 KPFKCQICPYAAADSKSLRVHYKTH 119
KPF+C +C + + S L +H K H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 52.6 bits (127), Expect = 1e-09
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 85 KKHTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSK 142
K H R HTGEKP+KC C + A S L HY+ H G + + C +C++ F
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH---TGAKPFQCGVCNRSFSRSDH 90
Query: 143 LDFHVNLH 150
L H+ H
Sbjct: 91 LALHMKRH 98
Score = 38.8 bits (91), Expect = 1e-04
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 82 NDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYT 139
+ R H + P C S L+ H +TH G + Y CT C RF
Sbjct: 7 GPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH---TGEKPYKCTWEGCDWRFAR 59
Query: 140 KSKLDFHVNLHN--LNYNCEVCEKVF 163
+L H H + C VC + F
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 33.4 bits (77), Expect = 0.010
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 57 KRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHT 92
RHY KHT K F C C+ + + + H ++H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 57.5 bits (140), Expect = 2e-11
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ AC C + + +H H+GEKP+ C +C + H ++H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 123 NGRRVYHCTICSKRFYTKSKLDFH 146
G+ Y C C K F L+ H
Sbjct: 62 VGKP-YICQSCGKGFSRPDHLNGH 84
Score = 52.1 bits (126), Expect = 2e-09
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G C+IC D L H +H +G + Y C +C RF K ++ +HV H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH---SGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 151 ----NLNYNCEVCEKVF 163
Y C+ C K F
Sbjct: 59 DGSVGKPYICQSCGKGF 75
Score = 41.7 bits (99), Expect = 1e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGE--KPFK 98
C +C + + + RH L H+ EK ++C C + + + H R H G KP+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 99 CQICPYAAADSKSLRVHYK-TH 119
CQ C + L H K H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.6 bits (135), Expect = 4e-11
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVN 148
GE ++C++C + HY T K +VY C C K F K + HV
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR-NVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 149 LHN 151
+ +
Sbjct: 62 IIH 64
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTR--KHTGEKPFKCQICPYAAADSKSLRVHYKTHA 120
E + C C +I++ +H K + C C ++ H K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 121 K 121
K
Sbjct: 65 K 65
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 57.1 bits (139), Expect = 4e-11
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 41 YTC--LLCKQKESQAWKIKRHYLKHTQEKFFACS--HCDYKSAYINDVKKHTRKHTGEKP 96
+ C C ++ + ++ H KHT EK + C C+ + + + +K+H R+HTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
F+C+ C + S L+ H +TH G + + C C K+F +L H N+H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH---TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.4 bits (98), Expect = 3e-05
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 92 TGEKPFKC--QICPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHV 147
+ ++PF C C L++H + H G + Y C C +RF +L H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH---TGEKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 148 NLHNLN--YNCEVCEKVF 163
H + C+ C++ F
Sbjct: 59 RRHTGVKPFQCKTCQRKF 76
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 56.4 bits (137), Expect = 4e-11
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 62 KHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTH 119
K T + C + +K H R HTGEKP+ C C + A S L HY+ H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 120 AKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
G R + C C + F L H+ H
Sbjct: 61 ---TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 54.8 bits (133), Expect = 1e-10
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKP 96
C + +++ +K H HT EK + C C +K A +++ +H RKHTG +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 97 FKCQICPYAAADSKSLRVHYKTH 119
F+CQ C A + S L +H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.5 bits (101), Expect = 5e-06
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 90 KHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHV 147
K T C S L+ H +TH G + YHC C +F +L H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHT---GEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 148 NLHN--LNYNCEVCEKVF 163
H + C+ C++ F
Sbjct: 58 RKHTGHRPFQCQKCDRAF 75
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 56.3 bits (137), Expect = 5e-11
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 41 YTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
Y C + C ++ SQ+ + RH HT +K F C C + + + H R HTGEKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99 CQICPYAAADSKSLRVHYKTHAKE 122
C IC A S + H K H ++
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQ 88
Score = 54.8 bits (133), Expect = 2e-10
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 66 EKFFAC--SHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
E+ +AC CD + + + +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---T 58
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + + C IC ++F + H +H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 39.4 bits (93), Expect = 6e-05
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
E+P+ C + C + S SL H + H G++ + C IC + F L H+ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH---TGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 152 LN--YNCEVCEKVF 163
+ C++C + F
Sbjct: 59 GEKPFACDICGRKF 72
Score = 37.4 bits (88), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ C +C + S++ + H HT EK FAC C K A ++ K+HT+ H +K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 55.1 bits (134), Expect = 2e-10
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYK 117
L +K F C C ++ H R HT E+P+ C IC A LR H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 118 THAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
H+KE + + C C K F L H LH
Sbjct: 67 IHSKE---KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
YTC +C + + ++ H H++EK F C C + H H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 33.6 bits (78), Expect = 0.012
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 29/78 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
+K F C+ C S +L +H +TH E +
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-----------------RP---- 45
Query: 146 HVNLHNLNYNCEVCEKVF 163
Y C++C K F
Sbjct: 46 --------YTCDICHKAF 55
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 54.5 bits (132), Expect = 2e-10
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN-GRRVYHCTICSKRFYTKSKLD 144
R HTGEKP+ C C + L +H+K + N + C+ C K F ++ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 145 FHVNLHNLN--YNCEVCEKVF 163
H + E
Sbjct: 65 RHADNCAGPDGVEGENSGPSS 85
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGE----KPFKCQICPYAAADSKSLRVHYKT 118
HT EK +ACSHCD + H +++ F C C ++ H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 119 HAKENGRRVYHCTICSKRF 137
A +G
Sbjct: 70 CAGPDG---VEGENSGPSS 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 52.9 bits (128), Expect = 9e-10
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 85 KKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLD 144
H R HTGEKPF C IC A S + H + L+
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ----HILPILEDKVEELLSKNYHLE 75
Query: 145 FHV 147
V
Sbjct: 76 NEV 78
Score = 46.0 bits (110), Expect = 3e-07
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHN-LN 153
KPF+C+IC + S L H +TH G + + C IC ++F + H ++ + L
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT---GEKPFACDICGRKFARSDERKRHRDIQHILP 58
Query: 154 YNCEVCEKVFDKIEEFENHLSDNHIFT 180
+ E++ K EN ++
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLV 85
Score = 44.4 bits (106), Expect = 1e-06
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
+ C +C + S++ + H HT EK FAC C K A ++ K+H P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 101 ICPYAAADSKSLRVH---YKTH 119
+ + L K
Sbjct: 63 KVEELLSKNYHLENEVARLKKL 84
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCD---YKSAYINDVKKHTRKHTGEK 95
+ C +C +K +++ + KRH + K+ ++ + +K GE+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 54.1 bits (131), Expect = 9e-10
Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 41 YTCLLCKQKESQAWKIKRHYLK---HTQEKFFACSHCDYKSAY-----INDVKKHTRKHT 92
C Q+ ++ H H + K F C + H R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 93 GEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCT--ICSKRFYTKSKLDFH 146
GEKP KC C + + ++L+ H ++H G + Y C CSK F S H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH---TGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 51.4 bits (124), Expect = 1e-08
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 41 YTCLLCKQKE-----SQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTG 93
+ C + + H +HT EK C+ C + + ++K H R HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 94 EKPFKCQ--ICPYAAADSKSLRVH-YKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVN 148
EKP+ C+ C A +++ H +TH + + Y C + C+KR+ S L HV
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTH---SNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 149 LH 150
Sbjct: 152 TV 153
Score = 42.6 bits (101), Expect = 1e-05
Identities = 25/112 (22%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRK---HTGEKPFKCQICPYAAAD-----SKSLRVHYK 117
E C + + H H K F C + L VH +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 118 THAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLHNLN--YNCE--VCEKVF 163
H G + + CT C K + L H+ H Y CE C K F
Sbjct: 61 RH---TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 52.8 bits (128), Expect = 1e-09
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ +K + C C + + +H H G +P+ C +C L H K H
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--- 60
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHNLNYNCEVCEKVF 163
G + Y C IC+KRF + HV +Y E+
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNT 101
Score = 49.0 bits (118), Expect = 3e-08
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVN 148
+G+K + CQ C + H H G R Y C +C K+F K L H+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH---LGLRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 149 LHNLN--YNCEVCEKVF 163
+H Y C +C K F
Sbjct: 59 IHTGIKPYECNICAKRF 75
Score = 47.4 bits (114), Expect = 1e-07
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYK 117
RH H + + C C K + + H + HTG KP++C IC S H
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRH 84
Query: 118 THAKENGRRVYHCTICSKRFYTKSKL 143
+ + Y + S
Sbjct: 85 VT---SCTKSYEAAKAEQNTTEASGP 107
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 51.5 bits (124), Expect = 2e-09
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 62 KHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+ + +AC CD + + +++ +H R HTG+KPF+C+IC + S L H +TH
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 8e-06
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 87 HTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLD 144
+P+ C + C + S L H + H G++ + C IC + F L
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT---GQKPFQCRICMRNFSRSDHLT 66
Query: 145 FHVNLH 150
H+ H
Sbjct: 67 THIRTH 72
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 57 KRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHT 92
RH HT +K F C C + + + H R HT
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 54.1 bits (131), Expect = 2e-09
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 46 CKQKE-----SQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFK 98
C + ++ WK++ H KHT EK F C C+ ++ + +H+ HTGEK F
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 99 C--QICPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
C C +++ H+ VY C C K F ++L H H
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIK-ICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 50.3 bits (121), Expect = 4e-08
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 46 CKQKE-----SQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEK--P 96
CK++ + + RH L HT EK F C CD + ++KKH + K
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 97 FKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCT--ICSKRFYTKSKLDFHVNLH-- 150
+ C C A L+VH +H + Y C C KRF S+L H +H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSH---TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 151 NLNYNCEVCEKVF 163
+ C V
Sbjct: 162 YPCKKDDSCSFVG 174
Score = 49.5 bits (119), Expect = 7e-08
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYIN--DVKKHTRKHTGEKPFKC--QICPYAAADSKSLRV 114
K + CS D +AY ++ H KHTGEKPF C + C L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 115 HYKTHAKENGRRVYHCT--ICSKRFYTKSKLDFHVNLH----NLNYNCEV--CEKVF 163
H TH G + + C C RF TK+ + H N Y C C K F
Sbjct: 63 HSLTH---TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Score = 48.0 bits (115), Expect = 3e-07
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 41 YTC--LLCKQKESQAWKIKRHYLKHTQEKFF----ACSHCDYKSAYINDVKKHTRKHTGE 94
+TC C + + +K+H+ + K +C N +K H HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 95 KPFKC--QICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRF--YTKSKLDFH 146
P++C + C + L+ H K HA ++ C+ K + Y K + H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 44.9 bits (107), Expect = 3e-06
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 86 KHTRKHTGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCT--ICSKRFYTKS 141
K + C C A + L+ H H G + + C C K F +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH---TGEKPFPCKEEGCEKGFTSLH 58
Query: 142 KLDFHVNLHN--LNYNCE--VCEKVF 163
L H H N+ C+ C+ F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRF 84
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 50.5 bits (122), Expect = 4e-09
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
H+ +KP+KC C + +L H H G + Y C IC +F + L
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHT---GEKPYRCNICGAQFNRPANLKT 63
Query: 146 HVNLH 150
H +H
Sbjct: 64 HTRIH 68
Score = 48.2 bits (116), Expect = 3e-08
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYK 117
H +K + C C Y ++ H HTGEKP++C IC +L+ H +
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Query: 118 THAKE 122
H+ E
Sbjct: 67 IHSGE 71
Score = 35.1 bits (82), Expect = 0.002
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
Y C C+ + H HT EK + C+ C + ++K HTR H+GEKP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 49.4 bits (119), Expect = 1e-08
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
+ H+GEKP+ C C A + S L H + H G + Y C C K F S L
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH---TGEKPYKCLECGKAFSQNSGLIN 60
Query: 146 HVNLH 150
H +H
Sbjct: 61 HQRIH 65
Score = 45.5 bits (109), Expect = 3e-07
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLR 113
H+ EK + C C S + +H R HTGEKP+KC C A + + L
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILV----QHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 114 VHYKTHAKE 122
H + H
Sbjct: 60 NHQRIHTSG 68
Score = 32.8 bits (76), Expect = 0.009
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKP 96
Y C+ C + S++ + +H HT EK + C C S I H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI----NHQRIHTSGPS 70
Query: 97 F 97
Sbjct: 71 S 71
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 50.6 bits (122), Expect = 1e-08
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFK 98
+ C C + ++ K+KRH L HT EK F C+ C + + +++ H R HTG++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 99 CQI--CPYAAADSKSLRVHYKTHAKE 122
C C A S +L+ H THAK
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 47.9 bits (115), Expect = 1e-07
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 46 CKQKE-----SQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
C K +++H H + C+ C + +K+H HTGEKPF+C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 101 I--CPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
C + +LR H + H G R Y C C+K+F + L H+ H
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHT---GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.3 bits (103), Expect = 5e-06
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 65 QEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ + AC H C + ++KH H G + C C A +S L+ H H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH--- 57
Query: 123 NGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
G + + CT C KRF L HV +H
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 33.6 bits (78), Expect = 0.012
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 41 YTCLL--CKQKESQAWKIKRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKP 96
+ C C ++ S + ++ H HT ++ + C C+ K A ++K H H K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 97 FK 98
+
Sbjct: 123 NQ 124
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 49.5 bits (119), Expect = 1e-08
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 85 KKHTRKHTGEKPFKC--QICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSK 142
K H HT + P++C + C + L+ H K HA G CS T +
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---GYPCKKDDSCSFVGKTWTL 76
Query: 143 LDFHV 147
HV
Sbjct: 77 YLKHV 81
Score = 46.5 bits (111), Expect = 1e-07
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 57 KRHYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRV 114
K H HTQ+ + C H CD + + + +K+H + H G K C +
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79
Query: 115 HYK-TH 119
H H
Sbjct: 80 HVAECH 85
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 49.5 bits (119), Expect = 1e-08
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 63 HTQEKFFACSH--CDYKSAYINDVKKHTR-KHTGEKPFKCQ--ICPYAAADSKSLRVHYK 117
+ C C + + H + +H +K F C C + K L+ H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 118 THAKENGRRVYHCTICSKRF 137
H+ R Y C
Sbjct: 62 LHS---DTRDYICEFSGPSS 78
Score = 44.5 bits (106), Expect = 9e-07
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 91 HTGEKPFKCQI--CPYAAADSKSLRVHYK-THAKENGRRVYHCT--ICSKRFYTKSKLDF 145
+G C C ++ + L H K H ++ + C C K F K L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH---IHQKSFSCPEPACGKSFNFKKHLKE 58
Query: 146 HVNLHNLN--YNCEVCEKVF 163
H+ LH+ Y CE
Sbjct: 59 HMKLHSDTRDYICEFSGPSS 78
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHY-LKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTG 93
C C + S + H +H +K F+C C + +K+H + H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 94 EKPFKCQIC 102
+ + C+
Sbjct: 66 TRDYICEFS 74
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 50.4 bits (121), Expect = 2e-08
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 16/123 (13%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEK---------FFACSHCDYKSAYINDVKKHTRKH 91
C + S ++ H + C + H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 92 TGEKPFKCQI--CPYAAADSKSLRVHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHV 147
TGEKPF C C A S++L++H +TH G + + C C +RF S H+
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTH---TGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 148 NLH 150
++H
Sbjct: 143 HVH 145
Score = 45.7 bits (109), Expect = 1e-06
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 51 SQAWKIKRHYLKHTQEKFFACSHCD-YKS-AYINDVKKHTRKHTGEKPFKCQI--CPYAA 106
+K+ H HT EK F C K A ++K H R HTGEKPFKC+ C
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 107 ADSKSLRVHYKTHAKENGRRVYHCT 131
A+S + H H + +
Sbjct: 133 ANSSDRKKHMHVHT---SDKSGPSS 154
Score = 45.7 bits (109), Expect = 1e-06
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 14/99 (14%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAA---------ADSKSLR 113
+ CD + ++++ H P + Y L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 114 VHYKTHAKENGRRVYHCTI--CSKRFYTKSKLDFHVNLH 150
H + H G + + C C K F L H H
Sbjct: 80 NHIRVH---TGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 30.7 bits (70), Expect = 0.19
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 107 ADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH-----------NLNYN 155
+ + ++ + + C + F T +L HV +
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE 64
Query: 156 CEVCEKVF 163
C K F
Sbjct: 65 CPREGKSF 72
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 48.2 bits (116), Expect = 3e-08
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
+ + + +KC C + + S L H +TH G + Y C C K F +S L
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH---TGEKPYKCDECGKAFIQRSHLIG 64
Query: 146 HVNLH 150
H +H
Sbjct: 65 HHRVH 69
Score = 44.4 bits (106), Expect = 7e-07
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYK 117
R + + + + C C ++ +D+ KH R HTGEKP+KC C A L H++
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 118 TH 119
H
Sbjct: 68 VH 69
Score = 33.2 bits (77), Expect = 0.008
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKP 96
Y C C + S + + +H HT EK + C C +S I H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI----GHHRVHTGSGP 74
Query: 97 FK 98
Sbjct: 75 SS 76
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 48.2 bits (114), Expect = 7e-08
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 84 VKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKT--HAKENGRRVYHCTICSKRFYTKS 141
K + TG F+C+ C A L VH H +++ + K
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 142 KLDFHVNLHNLN--YNCEVCEKVFDKIEEFENHLSDNH 177
L + C C F+ +++ H+
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 45.9 bits (108), Expect = 6e-07
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Query: 51 SQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTR--KHTGEKPFKCQICPYAAAD 108
S K + T F C C + ++ H H + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 109 SKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH 146
R + KE+ ++V C C F + L H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 30.1 bits (67), Expect = 0.22
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 109 SKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNL-HNLNYNCEVCEKVFDKIE 167
S +++ G + C CS + T +L H+N + + + K
Sbjct: 4 GSSGKLYGSIF---TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 168 EFENHLS 174
S
Sbjct: 61 SKPRKRS 67
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 46.6 bits (112), Expect = 1e-07
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
H H+ +P+ CQ C ++ H H G + + C +C K F S L
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---TGEKPHKCQVCGKAFSQSSNLIT 75
Query: 146 HVNLH 150
H H
Sbjct: 76 HSRKH 80
Score = 46.6 bits (112), Expect = 1e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
+ C +C + ++ + H L H+ + + C +C + +D+KKHT HTGEKP KCQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 101 ICPYAAADSKSLRVHYKTH 119
+C A + S +L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.8 bits (109), Expect = 1e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TR TG KPF+C C + + S L +H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 62 KHTQEKFFACSHCDYKSAYINDVKKHTRKH 91
T K F C CD + + + H ++H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.2 bits (109), Expect = 1e-07
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 71 CSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
C C + + +KKH R HT +P+ C C ++ +L H K+ A
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 43.2 bits (101), Expect = 2e-06
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 40 KYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
KY C C + + +K+H HT + + C++C++ ++ KH + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.1 bits (80), Expect = 0.001
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+ C+ C L+ H +TH R YHCT C+ F TK L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT---DVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.1 bits (62), Expect = 0.35
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVFDKIEEFENHL 173
Y C C R S L H+ H Y+C C F H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 44.3 bits (105), Expect = 7e-07
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 57 KRHYLKHTQEKFFACSHCDYKSAYI--NDVKKHTRKHTGEKPFKCQI--CPYAAADSKSL 112
+ ++ + CSH Y + +K HTR HTGEKPF C C A S L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 113 RVHYKTH 119
H +TH
Sbjct: 66 SRHRRTH 72
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 42.7 bits (101), Expect = 2e-06
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 59 HYLKHTQEKFFACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQ 100
T EK FAC+ C ++ + +++ +H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.4 bits (95), Expect = 1e-05
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 87 HTRKHTGEKPFKCQ--ICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKPF C C + + S L H ++H +G + +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH---SGVKPSGPS 46
Score = 25.0 bits (55), Expect = 3.7
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 39 RKYTC--LLCKQKESQAWKIKRHYLKHTQEKFFACS 72
+ + C C + S++ ++ RH H+ K S
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.2 bits (100), Expect = 2e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKPF+C+ C + S SL H ++H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C C ++ + KH R H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 42.1 bits (100), Expect = 3e-06
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ GEKP+ C+IC ++L+ H + H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS 37
Score = 37.9 bits (89), Expect = 9e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
EK + C C + ++ +K H R HTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 5e-06
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC C A L +H ++H G R +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH---TGERHSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + CS C + + H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 41.4 bits (98), Expect = 5e-06
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKPFKC C + +L VH+K H G + +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT---GEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C C + + + H + HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 6e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC C + LR+H K H G R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT---GERHSGPS 44
Score = 38.7 bits (91), Expect = 5e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + CS C + + ++ H + HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ GEKP++C C A + SL VH + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.5 bits (75), Expect = 0.007
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
EK + C C + + H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRK-HTGEKPFKCQIC 102
+ K + C C + + + H ++ HT E+P KCQ+
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 38.7 bits (91), Expect = 5e-05
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYK-THAKENGRRVYHCTICSKRF 137
+ KP+ CQ C + L H K H R + C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH---TSERPHKCQVWVSGP 51
Score = 27.5 bits (62), Expect = 0.50
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 115 HYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV-NLHNLN--YNCEVCEKVF 163
+ + + Y C C K F L+ H+ +H + C+V
Sbjct: 3 SGSSGSVG---KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TG++P++C C A SL H ++H G + +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT---GEKPSGPS 44
Score = 37.9 bits (89), Expect = 8e-05
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T ++ + C C KS+ I H R HTGEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLI----CHRRSHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.5 bits (96), Expect = 1e-05
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHCD----YKSAYINDVKKHTRKHTGEKPFKC 99
T EK F CS C KS I H R HTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLI----VHQRTHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKPF+C C A +L VH +TH G + +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT---GEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
GEK +KC+ C + + SLR+H H E
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE 38
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
EK + C CD + + ++ H H GEKP
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TG KP+ C C A L +H +TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T K + C+ C KS I HTR HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLI----IHTRTHTGESGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP++C IC + L VH + H G + +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT---GEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + CS C + + H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.9 bits (94), Expect = 1e-05
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
T K + C C A L H K H +++G
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG 40
Score = 26.4 bits (59), Expect = 0.98
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T K + C+ C I + +H + HT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TG KP+ C C + L VH ++H G + +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT---GVKPSGPS 44
Score = 38.3 bits (90), Expect = 6e-05
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHCD----YKSAYINDVKKHTRKHTGEKPFKC 99
T K + CS C KS I H R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLI----VHQRSHTGVKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 39.9 bits (94), Expect = 1e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + + KH R H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 9e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+ C+ C + + L H + H+ G + +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS---GEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ GEKP+KC+ C LR H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
EK + C C + + ++ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKPF+C C + + S L H + H G + +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT---GEKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C+ C + + + H R HTGEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC+ C +L +H K H G R +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT---GERPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C ++ H + HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKPF C C A +D L H + H G + +
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT---GEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C C + + +H R HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 2e-05
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC C A SL +H TH+ G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS---GEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 2e-05
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP++C +C A + +SL VH + H+ G++ +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS---GKKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + CS C ++ + H R H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TGEKP++C C A +L VH +TH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 35.5 bits (83), Expect = 5e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 59 HYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + KS + H R HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLM----VHQRTHTGESGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
+GEKP++C C A L VH +THA +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C+ C +KS I H R H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLI----VHERTHAGVSGPSS 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGE PF C C +L +H K H E R +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE---RPSGPS 44
Score = 37.9 bits (89), Expect = 9e-05
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 59 HYLKHTQEKFFACSHCD----YKSAYINDVKKHTRKHTGEKPFKC 99
T E F CS C +K+ I H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLI----IHQKIHTGERPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.4 bits (93), Expect = 3e-05
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
GE+ +C C + + H + H E
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
E+ CS C ++ +H R HTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP +C+ C + + + L VH + H G +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT---GENPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/46 (30%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T EK C C + S I H R HTGE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLI----VHQRIHTGENPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-05
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKPFKC IC + L H H E
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C C + + +H+ HT EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 3e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
+GEKPFKC+ C + H ++H+ G + +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS---GEKPSGPS 44
Score = 36.4 bits (85), Expect = 4e-04
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
+ EK F C C + H R H+GEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ EKP+KC+ C +L +H + H E
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C C ++ H R H GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGE+P+ C +C A D +L H K H E
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 38.2 bits (90), Expect = 7e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
T E+ + C+ C +++ KH + HTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 3e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+GEKPFKC+ C + L H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 37.9 bits (89), Expect = 9e-05
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK F C C + + + H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 3e-05
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHC 130
TGEKP++C C + L VH + H G
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT---GENPSGP 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + CS C + + H R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 4e-05
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
GEKP+ C C A + L +H +TH+ G + +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS---GEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
EK + CS C KS I H R H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLI----IHMRTHSGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 4e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC C A D+ S H + H G+R +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT---GQRPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + +H R HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP++C C A D +L H K H E
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE 38
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C +++ H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-05
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGE+ ++C C A A +L +H + H G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT---GEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T E+ + CS C KS I H R HTGEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLI----MHQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+ C+ C A L+ H + H E
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + +++H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 4e-05
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP KC C A L +H +TH + +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV---DDKHSGPS 44
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 63 HTQEKFFACSHCD----YKSAYINDVKKHTRKHTGEKPFKC 99
T EK C+ C +KS I H R H +K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLI----MHQRTHVDDKHSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 4e-05
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
+GEKP+ C C A S L H + H G + +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT---GEKPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C +C ++ +H R HTGEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 63 HTQEKFFACSHCD----YKSAYINDVKKHTRKHTGEKPFKC 99
+ EK F CS C+ KS + H + H EKP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLL----VHQQTHAEEKPSGP 41
Score = 37.1 bits (87), Expect = 2e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEKPF C C A + L VH +THA+E
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 5e-05
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGE P++C C A + L H +THA G + +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHA---GEKPSGPS 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T E + C C K I H R H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLI----SHQRTHAGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 5e-05
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KC+ C + L H+ H G + +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT---GEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C D+ H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
+GEKP+KC C L H + H G ++ +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT---GEKLSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C C D+ H R HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C A + + L H + H E
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + + +H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+ C C A +L H K H K+ + +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ---KPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C +++ KH + HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP++C++C A L H KTH E
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + +H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 6e-05
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEKP+ C C + L H +TH E
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C+ C + + + H R HTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 7e-05
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+KCQ+C A S L H+ H +G R +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH---SGERPSGPS 44
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + +H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 7e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP++C +C A + SL H + H+ G + +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS---GEKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C ++ + +H R H+GEKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 7e-05
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP++C C A + SL H H +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 36.0 bits (84), Expect = 5e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + + H HTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 7e-05
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ CS C+ + + H R HT EKP
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 37.9 bits (89), Expect = 8e-05
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
G P+KC C + + L VH + H +E
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE 38
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 7e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TGEKP+KC +C + SL VH + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQ 100
T EK + C C Y + + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 8e-05
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
G+K FKC C S SL VH + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 35.9 bits (84), Expect = 5e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+K F C+ C + + H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 8e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEK + C+ C + + + L H + H+ E
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE 38
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + KH R H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 37.9 bits (89), Expect = 9e-05
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T +K F C+HC ++ H R HTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TG+KPF+C C + +L H + H G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT---GEKSGPSS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 9e-05
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TG K F+C C A +L +H K H G + +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT---GEKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 58 RHYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T K F C+ C KS H + HTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLS----MHQKIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
GEK +KC +C + S L+ H + H G + +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH---TGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
EK + C C + + + ++ H R HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK F C C + H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+GEKPFKC+ C A + L H + H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGE+ ++C C A +L +H + H G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR---GEKPSGPS 44
Score = 35.2 bits (82), Expect = 9e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T E+ + CS C + + H R H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TGEKP+ C C + L H + H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 34.4 bits (80), Expect = 0.001
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + +H R HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEK +KC C + + L H K H E
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + + +H + HTGEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEKPF+C+ C + L H + H E
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK F C C + + + H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TG KP++C C A + + L H + H G + +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT---GEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TG KP+ C C A + SL H H E
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE 38
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T K + C+ C + + + H HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP+ C +C A S L H + H + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH---TQETLSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK ++C+ C + +H R HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK F C C + +H R HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKPFKC C + L H + H E
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 85 KKHTRKHTGEKPFKCQICPYAAADSKSLRVHY-KTHAKENG 124
K+H R HT EKP+ C +C A L H K H+ G
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 36.3 bits (85), Expect = 4e-04
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFH 146
+ F C++C A A + L+ HY++H E + Y C +C++ F + L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE---KPYPCGLCNRAFTRRDLLIRH 49
Score = 28.2 bits (64), Expect = 0.36
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 41 YTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRK-HTGEK 95
+ C +C + ++ +KRHY HT EK + C C+ + + +H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 24.4 bits (54), Expect = 9.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHNLN--YNCEVCEKVF 163
+ C +C++ F + L H H Y C +C + F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C + L H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 1e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
GE PFKC C L H +THA+++G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.9 bits (75), Expect = 0.006
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
E F CS CD N + +H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 38.1 bits (88), Expect = 1e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 84 VKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKL 143
K + H G++ KC C +L + R+ C C K ++ L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTL----------SRRKTPMCEKCRKDSCQEAAL 55
Query: 144 DFHVNLH 150
+
Sbjct: 56 NKDEGNE 62
Score = 29.6 bits (66), Expect = 0.16
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 7/68 (10%)
Query: 56 IKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVH 115
+ H ++ CS C + + K C+ C + +L
Sbjct: 6 SGKRQKIHLGDRSQKCSKC-------GIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 116 YKTHAKEN 123
+ +
Sbjct: 59 EGNESGKK 66
Score = 26.9 bits (59), Expect = 1.4
Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 8/64 (12%)
Query: 109 SKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLNYNCEVCEKVFDKIEE 168
S S K H G R C+ C F +S L CE C K +
Sbjct: 3 SGSSGKRQKIHL---GDRSQKCSKCGIIFIRRSTLSRRKT-----PMCEKCRKDSCQEAA 54
Query: 169 FENH 172
Sbjct: 55 LNKD 58
Score = 26.9 bits (59), Expect = 1.6
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
++ K C C S + K +G+K
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGEKP++C+ C A + + L H + H G + +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT---GEKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + +H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C + L H H E
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + +H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
GEKP++C C + + S L H+ TH +E
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE 38
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 59 HYLKHTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
EK + CS C +H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLT----QHWITHTREKPSGP 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.9 bits (86), Expect = 2e-04
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 88 TRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
+ +GEKP+ C C +D+ L H K H ++G
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG 38
Score = 28.8 bits (65), Expect = 0.16
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK ++C+ C + N + +H + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + + +H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C + L H + H E
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C + L H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGG 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + +H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 2e-04
Identities = 47/247 (19%), Positives = 72/247 (29%), Gaps = 87/247 (35%)
Query: 1 MLRSTDTPSKLICSFCLEEVDNSALK-MFEHNCDGVLNARKYT--CLLCKQKESQA-WK- 55
M+ T KL +E++ + F G+L+A ++T L +A ++
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-KGLLSATQFTQPALTLM---EKAAFED 1746
Query: 56 IKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAA----ADSKS 111
+K L + FA H S GE YAA AD S
Sbjct: 1747 LKSKGLI-PADATFA-GH----S-------------LGE---------YAALASLADVMS 1778
Query: 112 LR-----VHY--KTHAK-----ENGRRVYH-CTICSKRFYTKSKLDFHVNLHNL------ 152
+ V Y T E GR Y I R + L +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE---ALQYVVERVGK 1835
Query: 153 ---------NYNCE----VC--EKVFDKIEEFENHLSDNHIFTYDHGTKDDKLEKLSAEM 197
NYN E V + ++ N L N I + + +L +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVL--NFI-----KLQKIDIIELQKSL 1886
Query: 198 LYQEERD 204
+E
Sbjct: 1887 SLEEVEG 1893
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 36.9 bits (86), Expect = 2e-04
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ GE P+ C C + SL VH ++ ++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 31.1 bits (71), Expect = 0.022
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFK 98
E + C C + H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C + + +H HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 5e-04
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C + L H H E
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T E+ C+ C + +H R HTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 5e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
TGE+P KC C + S L H + H G + +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT---GEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GE+PFKC C L H + H++E
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ E+ F C+ C + + H R H+ EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENG 124
TGE P++C C + L H KTH+ ++G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG 40
Score = 32.9 bits (76), Expect = 0.005
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 63 HTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
T E + C C K + H + H+G+
Sbjct: 7 GTGENPYECCECGKVFSRKDQLV----SHQKTHSGQSGPSS 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C + + +H HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TGEKP+KC C + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP++C C A A +L H + H E
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE 38
Score = 35.9 bits (84), Expect = 5e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C C A ++ +H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TGEKP+KC C A +L H H E
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T EK + C+ C +++ H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEKP+KC C + L H++ H E
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
Score = 36.3 bits (85), Expect = 4e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + C+ C + + H R HTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
+GEKP+KC C A L H + H G R +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH---TGYRPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK + CS C + +H R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.8 bits (87), Expect = 3e-04
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKH-TRKHTG---EKPFKCQICPYAAADSKSLR 113
+ E + C +C +++ +N H +H + C C + +L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 114 VHYKTH 119
H +
Sbjct: 68 EHNLKY 73
Score = 36.7 bits (84), Expect = 8e-04
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 82 NDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKT-HAKENGRRVYHCTICSKRFYTK 140
+ + + E ++C+ C + D H + H Y C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 141 SKLDFH 146
L H
Sbjct: 64 DALSEH 69
Score = 31.7 bits (71), Expect = 0.050
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 28 FEHNCDGVLNARKYTCLLCKQKESQAWKIKRH-YLKHT---QEKFFACSHCDYKSAYIND 83
HN Y C C + H +H + C C++ + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 84 VKKHTRK-HTGEKPFKCQI 101
+ +H K H GE+ FK +
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 26.7 bits (58), Expect = 2.8
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 115 HYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLN------YNCEVCEKVFDKIEE 168
H+ + Y C C+ + + FHV+ + N Y C C + + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 169 FENHLSDNH 177
H H
Sbjct: 66 LSEHNLKYH 74
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCT 131
+GE+P+ C C L H K H +E + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE---KSSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ E+ + C+ C + + +H ++H EK
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.5 bits (84), Expect = 4e-04
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 62 KHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQIC 102
K AC C + + +H H+GEKP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.019
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHC 74
++ C +C + + + RH L H+ EK ++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.032
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 88 TRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICS 134
K C+IC D L H +H+ E + Y S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE---KPYSSGPSS 47
Score = 27.2 bits (60), Expect = 0.73
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 121 KENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
R+ C IC K F L+ H H+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+GEK C C +LR+H + H E
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ EK C C YI+ ++ H R H GEK
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 25.2 bits (56), Expect = 3.2
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 115 HYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+ + E + + C C K F S L H +H
Sbjct: 3 SGSSGSGE---KSHTCDECGKNFCYISALRIHQRVH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 5e-04
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+G+KP++C+ C L H + H E
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ +K + C C I + +H R HTGE+
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
TG+KP+KC C + L H H E
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
T +K + C+ C + + +H HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 35.2 bits (80), Expect = 7e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ K + C C Y SA ++ H RKHTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.8 bits (66), Expect = 0.057
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ KP+KC C YA+A +L VH + H E
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.2 bits (85), Expect = 8e-04
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 87 HTRKHTGEKPFKCQI-CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDF 145
H ++ + + + + C +C F + L
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQ 92
Query: 146 HVNLHNLNYNCEVCEKVFDKIEEFENHLSDNH 177
H+ C VC+K F + +H+ H
Sbjct: 93 HIRYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 34.1 bits (77), Expect = 0.011
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 59 HYLKHTQEKFFAC----SHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRV 114
H L Q++ + + + F C +C + S SL+
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQ 92
Query: 115 HYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV-NLHNL 152
H + C +C K F + HV HN+
Sbjct: 93 HIRYTEHT-----KVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 29.1 bits (64), Expect = 0.54
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKH 91
++ C LC S + +K+H K C C + + H K
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKK 123
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ K +C C L H + H E
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE 38
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKC 99
+ K C C + + +H R HTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 63 HTQEKFFACSHC----DYKSAYINDVKKHTRKHTGEKPFKC 99
+ E + CS C + K I H R H GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLI----SHQRTHAGESGPSS 41
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHC 130
+GE P++C C A L H +THA E+G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG---PSS 41
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.3 bits (88), Expect = 0.001
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVN 148
+ + + T + +G Y C +CS ++ LD HV
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHG---YQCHVCSAVLFSPLDLDAHVA 201
Query: 149 LH 150
H
Sbjct: 202 SH 203
Score = 31.4 bits (70), Expect = 0.27
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
+ ++C +C L H +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.0 bits (82), Expect = 0.002
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 85 KKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLD 144
++ ++C++C + H + R C CS RF++
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-----RNAAVCPYCSLRFFSPELKQ 59
Query: 145 FHVNLHNL-NYNCEVCEKVFDKIEEFENHLSDNH 177
H + C C + F H + H
Sbjct: 60 EHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 30.6 bits (68), Expect = 0.12
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 37 NARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKP 96
N Y C LC K S + H + C +C + ++K+ K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSH--ERLCRNAAVCPYCS-LRFFSPELKQEHESKCEYKK 69
Query: 97 FKCQICPYAAADSKSLRVHYKTHAKEN 123
C C S S+ H +N
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 28.7 bits (63), Expect = 0.60
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGR 125
++ + C C+ K + + + H R C C + + H
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC----EY 67
Query: 126 RVYHCTICSKRFYTKSKLDFH-VNLHNLN 153
+ C C + F + + H V +HN N
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVH 115
TG+KP++C C A + SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 32.9 bits (76), Expect = 0.005
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 59 HYLKHTQEKFFACSHC----DYKSAYINDVKKHTRK-HTGEKPFKC 99
T +K + C C ++ I +H R HTGEKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLI----RHWRYYHTGEKPSGP 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 88 TRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ +G++ ++CQ C + SL +H + H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.1 bits (66), Expect = 0.13
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPF 97
+ ++ + C C + H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 23.7 bits (52), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G+RVY C C K F K L H +H
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIH 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 31.5 bits (71), Expect = 0.055
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 9/68 (13%)
Query: 41 YTCLLCKQKESQAWKIKRHYLK-HTQEKFFACSHCDYKSAYIND--------VKKHTRKH 91
C + S ++ H H C ++ + H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 92 TGEKPFKC 99
TGEK
Sbjct: 86 TGEKSGPS 93
Score = 30.3 bits (68), Expect = 0.11
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHY-KTHAKENGRRVY-----HCTICSKRFYTKSKLD 144
+ + C + L H H + + C K F K KL
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 145 FHVNLH 150
H+ +H
Sbjct: 80 NHIRVH 85
Score = 27.2 bits (60), Expect = 1.4
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 153 NYNCEVCEKVFDKIEEFENHLSDNHI 178
+ + C++ F + E H++ H+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHV 50
Score = 25.7 bits (56), Expect = 4.8
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 43 CLLCKQKESQAWKIKRHYLKHTQEKFFACS 72
C + +K+ H HT EK S
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.1 bits (64), Expect = 0.11
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
KPFKC +C YA +L+ H H+ E
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 25.6 bits (55), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K F CS C+Y + +++K H +H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.11
Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 48/218 (22%)
Query: 4 STDTPSKLICSFCLEEVDNSALKMFEHNCDGVLNARKYTCLLCKQKESQAWKIKRHYLKH 63
S P+ L+ + + + + + KY+ + + KES +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNK-------LHKYSLVEKQPKES------TISI-P 429
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTR---KHTGEKPFKCQICPYAAADSKSLRVHYKTHA 120
+ + + K N+ H + K F D ++ +H
Sbjct: 430 SI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHI 477
Query: 121 KENGRRVYHCTIC--SKRF--YTKSKLDFH---VNLHNLNYNCEVCEKVFD---KIEEFE 170
+H +R + LDF + + + + + +++ ++
Sbjct: 478 ------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 171 NHLSDNHIFTYDHGTKD--DKLEKLSAEMLYQEERDTI 206
++ DN Y+ D L K+ ++ + D +
Sbjct: 532 PYICDNDP-KYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 31.0 bits (69), Expect = 0.33
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 119 HAKENGRRVYHCTICSKRFYTKSKLDFHVNLHNLNYN---------CEVCEKVFDKIEEF 169
A R++ + SK+ + F + +NY + E
Sbjct: 59 DAVSGTLRLFWT-LLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 170 ENHL-SDNHIFTYDHGTKDDKLEKLSAEMLYQEERDTIVF 208
+ L +DN +F + ++ KL + L + V
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVL 154
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.13
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKENGR 125
+GEKP+ C +C + H ++H G+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 28.0 bits (61), Expect = 0.30
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
+G + Y C +C RF K ++ +HV H+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 27.8 bits (61), Expect = 0.31
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHA 120
EKPF C +CP + D ++ H +TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTHG 27
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.32
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 102 CPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV 147
CP A + K H + + ++ C C K+ + + + +HV
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHV 82
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.4 bits (60), Expect = 0.37
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+G++PF C+IC A + H K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 1.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 123 NGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+G+R + C IC F TK+ H+ +H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.4 bits (61), Expect = 0.39
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 125 RRVYHCTICSKRFYTKSKLDFHVNLH 150
R Y C+ C + F + L H+N+H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.5 bits (60), Expect = 0.39
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C + +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.43
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 128 YHCTICSKRFYTKSKLDFHVNL-HNLNYNCEVCEKVFDK-IEEF 169
Y C +C+ RF T S L H+ H + + + + + I F
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSF 160
Score = 29.0 bits (64), Expect = 1.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 150 HNLNYNCEVCEKVFDKIEEFENHLSDNH 177
+ +Y C VC F + HL +H
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 27.0 bits (59), Expect = 0.52
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K + C HC + A +++H R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.9 bits (56), Expect = 1.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
KP+ C C AD +L+ H + H E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.8 bits (66), Expect = 0.66
Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 153 NYNCEVCEKVFDKIEEFENHL-SDNHIFTYDHGTKDDKLE---KLSAEMLYQEERDTIVF 208
C C + F FE+HL H E + L E T F
Sbjct: 292 GIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSF 351
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 0.87
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV----NLH 150
+C++C HY++ N R Y + K +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 151 NLNYNCEVCEKVFDKIEEFENHLS 174
+ + C VC F E+H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYI 114
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 0.87
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAK 121
EK FKC C + SK L H + H +
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.0 bits (64), Expect = 1.0
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 44 LLCKQKESQAW-KIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQIC 102
LL Q + + + R + + + ++ H GEK + +
Sbjct: 155 LLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKS 214
Query: 103 PYAAADSKSLRVHYKTHAKENGR 125
+ + LR G+
Sbjct: 215 EQVLDNPEDLRGPIHLSVLRQGK 237
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.6 bits (55), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 153 NYNCEVCEKVFDKIEEFENHLSDNH 177
+Y+C VCEK F + ++H+ NH
Sbjct: 9 SYSCPVCEKSFSEDRLIKSHIKTNH 33
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.2 bits (59), Expect = 1.9
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 95 KPFKCQICPYAAADS-KSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHV 147
C C + L+ H + K C C K+F +K+ L++H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD--ALKCQHCRKQFKSKAGLNYHT 74
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 2.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ F C C A +K+H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 3.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ F C++C A A + L+ HY++H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 23.4 bits (51), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQEK 67
R + C +C + ++ +KRHY HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 61 LKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ K F C +C+ + + ++ H R HT EK
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 24.9 bits (55), Expect = 2.9
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 69 FACSH--CDYKSAYINDVKKHTRKHTGEK 95
F C+ C + +++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 27.4 bits (60), Expect = 3.1
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 154 YNCEVCEKVFDKIEEFENHLSDNHIFTYDHGTKDDKLEKLSA 195
Y C C + + + D+ +H ++ L+
Sbjct: 34 YFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLAR 75
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces
cerevisiae} PDB: 4ejs_A
Length = 361
Score = 27.5 bits (60), Expect = 3.2
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 1 MLRSTDTPSKLICSFCLEEVDNSALKMFEHNCDGVL 36
+++ L S ++ + L + + D V+
Sbjct: 252 LVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVI 287
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 26.7 bits (58), Expect = 4.4
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 154 YNCEVCEKVFDKIEEFENHLSDNHIFTYDHGTKDDKLEKLSAEMLYQE 201
Y C C + + L + +H ++ L+
Sbjct: 32 YFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVN 79
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.4 bits (52), Expect = 4.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLH 150
R Y C++C KRF K +++ H +H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.4 bits (59), Expect = 6.5
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 144 DFHVNLHNLNYNCEVCEKVFDKIEEFENHLSDNH 177
+F +N+ N N + E+ ++ I+E +H +H
Sbjct: 143 NFILNIENKNID-ELLSEIKKVIKEGGSHHHHHH 175
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 26.7 bits (59), Expect = 7.7
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 68 FFACSHCDYKSAYINDVKKHTRKHTGEKPFK-CQICPYAAADSKSLRVHYKTHAKENGRR 126
F C++C + + I D+ + R T K F C+ C D R H + A
Sbjct: 133 FINCTNCGPRFSIIEDI-PYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA------ 185
Query: 127 VYHCTIC 133
C C
Sbjct: 186 ---CFDC 189
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 26.1 bits (57), Expect = 8.1
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 154 YNCEVCEKVFDKIEEFENHLSDNHIFTYDH 183
Y C C + +E++ + +
Sbjct: 35 YTCPHCAAIEPMVEDWAKTAPQDVVLKQVP 64
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 25.2 bits (54), Expect = 8.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGE 94
Q + C HCD K ++ H H E
Sbjct: 20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,173,366
Number of extensions: 176018
Number of successful extensions: 1438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 511
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.6 bits)