RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4420
(213 letters)
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 44.3 bits (105), Expect = 1e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 87 HTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
TR TG KPF+C C + + S L +H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.4 bits (61), Expect = 0.16
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 59 HYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTG 93
T K F C CD + + + H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 42.8 bits (101), Expect = 5e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 86 KHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ + + +KC C + + S L H +TH E
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 37.8 bits (88), Expect = 3e-05
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 58 RHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKHTGE 94
R + + + + C C ++ +D+ KH R HTGE
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 42.4 bits (100), Expect = 6e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
R HTGEKP+ C C + L +H+K + N
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 32.0 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
HT EK +ACSHCD + H +++
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 27.3 bits (61), Expect = 0.18
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLHN 151
G + Y C+ C K F K LD H ++
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFKRYH 32
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.5 bits (98), Expect = 1e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTHAKE 122
H+GEKP+ C C A + S L H + H E
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 35.7 bits (83), Expect = 2e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGE 94
H+ EK + C C + + + +H R HTGE
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 26.8 bits (60), Expect = 0.21
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G + Y C C K F S L H +H
Sbjct: 4 GEKPYGCVECGKAFSRSSILVQHQRVH 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.7 bits (96), Expect = 2e-06
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 89 RKHTGEKPFKCQICPYAAADSKSLRVHYKTHAKEN 123
R H+GEKP++C IC S ++++H EN
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 30.7 bits (70), Expect = 0.009
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGEK 95
H+ EK + C C + +K H + E
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 25.3 bits (56), Expect = 0.80
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHV 147
G + Y C IC RF + H+
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHI 28
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 39.6 bits (93), Expect = 7e-06
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTRK-HTGEKPFKCQI 101
+ K + C C + + + H ++ HT E+P KCQ+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 31.1 bits (71), Expect = 0.007
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 92 TGEKPFKCQICPYAAADSKSLRVHYK-THAKENGRRVYHCTI 132
+ KP+ CQ C + L H K H E R + C +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE---RPHKCQV 39
Score = 24.2 bits (53), Expect = 2.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 128 YHCTICSKRFYTKSKLDFH 146
Y C C K F L+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGH 24
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 38.5 bits (89), Expect = 2e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTH 119
E+PFKCQICPYA+ +S L VH ++H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
Score = 23.5 bits (50), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGE 94
E+ F C C Y S + + H R HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 37.4 bits (87), Expect = 4e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 91 HTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+G++PF C+IC A + H K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.5 bits (69), Expect = 0.013
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 63 HTQEKFFACSHCDYKSAYINDVKKHTRKHTGE 94
+ ++ F C C + +H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 24.7 bits (54), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 124 GRRVYHCTICSKRFYTKSKLDFHVNLH 150
G+R + C IC F TK+ H+ +H
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVH 30
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 35.3 bits (81), Expect = 3e-04
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 58 RHYLKHTQEKFFACSHCD--YKSAYINDVKKHTRKHTGEK 95
Y+K +K F C +++ H + H ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 33.4 bits (76), Expect = 0.002
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 86 KHTRKHTGEKPFKCQICP--YAAADSKSLRVHYKTHAKE 122
K +K F+C ++R H +TH ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 34.7 bits (79), Expect = 5e-04
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAKENGRRVYHCTICSKRFYTKSKLDFHVNLH 150
+K + CQ C + H H G R Y C +C K+F K L H+ +H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMH---LGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 32.3 bits (73), Expect = 0.004
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYKTH 119
+K + C C + + +H H G +P+ C +C L H K H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 23.9 bits (51), Expect = 3.9
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 46 CKQKESQAWKIKRHYLKHTQEKFFACSHCDYKSAYINDVKKHTRKH 91
C + + + RH H + + C C K + + H + H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.4 bits (74), Expect = 0.002
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 69 FACSH--CDYKSAYINDVKKHTRKHTGEKPFKCQ 100
F+C C + +K+H + H+ + + C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.4 bits (72), Expect = 0.004
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTH 119
+KPF+C+IC + S L H +TH
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 25.6 bits (57), Expect = 0.48
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKHTG 93
+K F C C + + + H R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.1 bits (53), Expect = 1.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLH 150
+ C IC + F L H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 31.3 bits (70), Expect = 0.006
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHA 120
KP+KC+ C YAAADS SL H + H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
Score = 23.6 bits (50), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHT 92
K + C CDY +A + + KH R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.011
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
K FAC C + + + KH + H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.0 bits (68), Expect = 0.018
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
K F C CP S L H KTH +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNK 28
Score = 23.8 bits (52), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLH 150
+ C C KRF L H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.5 bits (67), Expect = 0.022
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTHAKE 122
+ F C++C A A + L+ HY++H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 28.7 bits (65), Expect = 0.047
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 67 KFFACSHCDYKSAYINDVKKHTRKHTGEK 95
+ F C C A +K+H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.5 bits (54), Expect = 1.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLH 150
+ C +C++ F + L H H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.0 bits (64), Expect = 0.041
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKT-HAKE 122
K ++CQ C + +ADS +L+ H KT H+KE
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
Score = 22.4 bits (47), Expect = 8.9
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 67 KFFACSHCDYKSAYINDVKKHTR-KHTGEK 95
K + C +C+++SA +++K H + KH+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.5 bits (59), Expect = 0.26
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 94 EKPFKCQI--CPYAAADSKSLRVHYKTHAKE 122
++P+ C C A + L H K+H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11
{Bacteriophage T4 [TaxId: 10665]}
Length = 208
Score = 28.3 bits (63), Expect = 0.56
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 157 EVCEKVFDKIEEFENHLSDNHIFTY--DHGTKDDKLE 191
E KV ++E ++ DH T KLE
Sbjct: 113 EFVAKVRVALQEA---IASFTAINSYKDHPTDGSKLE 146
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (56), Expect = 0.64
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 94 EKPFKCQICPYAAADSKSLRVHYKTHAK 121
EKPF C IC A S + H K H +
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
Score = 22.9 bits (49), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 66 EKFFACSHCDYKSAYINDVKKHTRKH 91
EK FAC C K A ++ K+HT+ H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.0 bits (55), Expect = 1.2
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 95 KPFKCQI--CPYAAADSKSLRVHYKTHAKE 122
+PF C C S L+ H +TH E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 24.6 bits (54), Expect = 1.6
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 67 KFFACSH--CDYKSAYINDVKKHTRKHTGEK 95
+ F C+ C + +++++H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.0 bits (54), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 128 YHCTICSKRFYTKSKLDFHVNLHN 151
Y C +C RF K ++ +HV H+
Sbjct: 4 YSCPVCGLRFKRKDRMSYHVRSHD 27
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.1 bits (53), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 95 KPFKCQICPYAAADSKSLRVHYKTH 119
KP+KC C A + + L H + H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 24.2 bits (53), Expect = 2.0
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 95 KPFKC--QICPYAAADSKSLRVHYKTHAKE 122
KP KC + C + + ++L+ H ++H E
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.9 bits (52), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 126 RVYHCTICSKRFYTKSKLDFHVNLHN 151
R Y C+ C + F + L H+N+H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHR 29
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.9 bits (51), Expect = 2.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 96 PFKCQICPYAAADSKSLRVHYKTHAKE 122
P KC C Y+ + +LR+H + H +
Sbjct: 2 PEKCSECSYSCSSKAALRIHERIHCTD 28
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.6 bits (53), Expect = 3.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 122 ENGRRVYHCTICSKRFYTKSKLDFHVNLHN 151
Y C C + + ++L H+N+HN
Sbjct: 13 RLQNSTYQCKHCDSKLQSTAELTSHLNIHN 42
Score = 24.3 bits (52), Expect = 4.8
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 64 TQEKFFACSHCDYKSAYINDVKKHTRKHTGE 94
Q + C HCD K ++ H H E
Sbjct: 14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 44
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 39 RKYTCLLCKQKESQAWKIKRHYLKHTQE 66
R + C C + ++ K+KRH L HT E
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTGE 28
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 24.1 bits (52), Expect = 3.9
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 11 LICSFCLEEVDNSALKMFEHN-CDGVLNARKYTCLLCKQK 49
L C C E L H C G L A C +C+
Sbjct: 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAP 46
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.2 bits (55), Expect = 4.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 156 CEVCEKVFDKIEEFENHLSDNHIFTYDHGTKDDKLE 191
C C+++F EE +H H F D LE
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLE 53
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 292
Score = 25.9 bits (56), Expect = 4.1
Identities = 14/105 (13%), Positives = 23/105 (21%), Gaps = 4/105 (3%)
Query: 13 CSFCLEEVDNSALKMFEHNCDGVLNARKYTCLLCKQKESQAWKIKRHYLKHTQEKFFACS 72
E N ++ H H K + +
Sbjct: 146 LHILNEVFTNPSIVKVFHGA----FMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLA 201
Query: 73 HCDYKSAYINDVKKHTRKHTGEKPFKCQICPYAAADSKSLRVHYK 117
+ A KK+ +P + A AD+ L Y
Sbjct: 202 YLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYD 246
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.9 bits (49), Expect = 4.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 69 FACSHCDYKSAYINDVKKHTRKHTGEK 95
+ C C ++ + +KKH R HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 22.3 bits (48), Expect = 8.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 95 KPFKC--QICPYAAADSKSLRVHYKTH 119
+P+ C + C + S L H + H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 22.5 bits (48), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 95 KPFKCQI--CPYAAADSKSLRVHYKTH 119
KP+ C++ C D SLR H KT
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (48), Expect = 8.7
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 95 KPFKCQI--CPYAAADSKSLRVHYKTHA 120
+P+ C C A S +L+ H THA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 22.2 bits (47), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 39 RKYTCLL--CKQKESQAWKIKRHYLKHTQE 66
++Y C C ++ WK++ H KHT E
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,503
Number of extensions: 39117
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 117
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)