RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4421
(167 letters)
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 47.5 bits (114), Expect = 3e-08
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 46/112 (41%)
Query: 58 NLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFV 117
+ H+GEKP+ C C+ +
Sbjct: 2 SSGSSGRTHSGEKPYE--------CYICH--------------ARFTQ------------ 27
Query: 118 CYACEYNTYMSGNIKTHLRLHL--DDKPYKCSLCNYECRQNVHLKSHMKSNH 167
SG +K H+ + + C C+ + L H++ H
Sbjct: 28 ----------SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 129 GNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
G+ + R H +KPY+C +C+ Q+ +K H+
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL 36
Score = 28.6 bits (65), Expect = 0.24
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGE--KPFSYMYENQQYCIHC 85
Y CY C FT +S +K HIL+ E F C HC
Sbjct: 16 YECYICHARFT-QSGTMKMHILQKHTENVAKFH--------CPHC 51
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 44 YGCYRCSYFTYESNNLKKHILK-HTGEKPFS 73
+ C C ++L H+ K H+ P S
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.5 bits (103), Expect = 1e-06
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLD---DKPYKCSLCNYECRQNVHLKSHMKSNH 167
C C + ++ H R H + + C C + + +H +H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 33.5 bits (77), Expect = 0.005
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
+C +C + CRQ L H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR 28
Score = 27.8 bits (62), Expect = 0.58
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHT---GEKPFS 73
C C + + +L H KH F
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFP 40
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 43.3 bits (103), Expect = 1e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 118 CYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
C C Y+ ++ H R+H D+P+KC+ C+++ +Q +L HMK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 33.2 bits (77), Expect = 0.006
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHM 163
P KCS C+Y C L+ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 32.9 bits (76), Expect = 0.007
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
C CSY L+ H H ++PF
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPF 38
Score = 32.1 bits (74), Expect = 0.014
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C CS+ T + +NL KH+ K G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 41.7 bits (99), Expect = 5e-06
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 44/110 (40%)
Query: 55 ESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHF 114
+S +L +HI HTG+KPF C C ++ S
Sbjct: 18 QSGSLTRHIRIHTGQKPFQ--------CRICM--------------RNFSR--------- 46
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
S ++ TH+R H +KP+ C +C + ++ K H K
Sbjct: 47 -------------SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 29.7 bits (68), Expect = 0.12
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C S++L HI HTGEKPF
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 25.1 bits (56), Expect = 4.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
+ C C S+ K+H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 42.1 bits (98), Expect = 9e-06
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 13/114 (11%)
Query: 55 ESNNLKKHILKHTGEKPFSYMYENQQYCIHCN-SYISSDIKDLIEHCKSCSHMTRPDAFH 113
++ K + TG F C C+ +Y + +L H H D H
Sbjct: 3 SGSSGKLYGSIFTGASKFR--------CKDCSAAYDTLV--ELTVHMNETGH--YRDDNH 50
Query: 114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
++ ++ K KC C + L HM
Sbjct: 51 ETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 39.8 bits (94), Expect = 5e-05
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 49/124 (39%)
Query: 47 YRCSYFT-----YESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC- 100
+ C+Y ++ ++L+ H KHTGEKP+ C+ + C
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPY-----------QCDF----------KDCE 45
Query: 101 KSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLK 160
+ S S +K H R H KP++C C + ++ HLK
Sbjct: 46 RRFSR----------------------SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 161 SHMK 164
+H +
Sbjct: 84 THTR 87
Score = 38.7 bits (91), Expect = 1e-04
Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 50/114 (43%)
Query: 55 ESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHF 114
S+ LK+H +HTG KPF C C + S
Sbjct: 50 RSDQLKRHQRRHTGVKPFQ--------CKTCQ--------------RKFSR--------- 78
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC----RQNVHLKSHMK 164
S ++KTH R H +KP+ C C ++ L H
Sbjct: 79 -------------SDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSDELVRHHN 117
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.2 bits (88), Expect = 6e-05
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSN 166
K++C C +K H+R H D +PY C+ CN+ + +L HMKS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.1 bits (62), Expect = 0.26
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 43 KYGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
KY C C + + LKKHI HT +P+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYH 31
Score = 27.0 bits (59), Expect = 0.74
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
Y C C++ NL KH+ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 36.7 bits (86), Expect = 4e-04
Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 45/121 (37%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
+ C C S++L HI HTGEKPF+ C C +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFA--------CDICG--------------RKF 41
Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
+ S K H + P +N HL++ +
Sbjct: 42 AR----------------------SDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV 78
Query: 164 K 164
Sbjct: 79 A 79
Score = 27.5 bits (62), Expect = 0.88
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 142 KPYKCSLCNYECRQNVHLKSHM 163
KP++C +C ++ HL +H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 36.8 bits (86), Expect = 4e-04
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 42/109 (38%)
Query: 56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK 115
S++LK H+ HTGEKP+ C+
Sbjct: 30 SSHLKAHLRTHTGEKPYK-----------------------------CTWE--------- 51
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
C++ S + H R H KP++C +CN ++ HL HMK
Sbjct: 52 ----GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 28.7 bits (65), Expect = 0.34
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 47 YRCSY------FTYESNNLKKHILKHTGEKPF 72
Y+C++ F S+ L +H KHTG KPF
Sbjct: 46 YKCTWEGCDWRFA-RSDELTRHYRKHTGAKPF 76
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 36.7 bits (86), Expect = 6e-04
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 21/128 (16%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHC-NSYISSDIKDLIEHCKS 102
C C LK H KHTGEKPF C C Y + +L+EH
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFE--------CPKCGKCYFRKE--NLLEH--- 54
Query: 103 CSHMTRPDAFHFK---FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHL 159
+ + F C C+ ++ H+ H + PYKCS C+ + Q L
Sbjct: 55 ----EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Query: 160 KSHMKSNH 167
+SHM H
Sbjct: 111 QSHMIKLH 118
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 36.7 bits (86), Expect = 7e-04
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 50/126 (39%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC-KS 102
+ C C ES+ LK+H L HTGEKPF C E C K
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQ-----------CTF----------EGCGKR 73
Query: 103 CSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYEC----RQNVH 158
S N++TH+R+H D+PY C C Q+ +
Sbjct: 74 FSL----------------------DFNLRTHVRIHTGDRPYVCP--FDGCNKKFAQSTN 109
Query: 159 LKSHMK 164
LKSH+
Sbjct: 110 LKSHIL 115
Score = 30.2 bits (69), Expect = 0.12
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
+ ++ HL H + + C+ C ++ LK H
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ 54
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 56 SNNLKKHILKHTGEKPF 72
S NLK HIL H K
Sbjct: 107 STNLKSHILTHAKAKNN 123
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 35.4 bits (82), Expect = 8e-04
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
S + H+R+H KP++C +C ++ HL +H++
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 28.0 bits (63), Expect = 0.36
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 56 SNNLKKHILKHTGEKPF 72
S+ L +HI HTG+KPF
Sbjct: 34 SDELTRHIRIHTGQKPF 50
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 35.9 bits (84), Expect = 0.001
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 44/121 (36%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSC 103
+ C C + LK H+ HTG KP Y+ C C+ +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP----YK----CKTCD--------------YAA 46
Query: 104 SHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
+ S ++ HLR+H D++P+KC +C Y R + L H+
Sbjct: 47 AD----------------------SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Query: 164 K 164
+
Sbjct: 85 R 85
Score = 26.6 bits (60), Expect = 2.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C Y + S+ L H+ HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGP 93
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 36.0 bits (84), Expect = 0.002
Identities = 28/138 (20%), Positives = 34/138 (24%), Gaps = 32/138 (23%)
Query: 44 YGCYRCSYFTYESNNLKKHILK---HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC 100
CS L HI H K F C +
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFV--------CHWGGCSREL--RPFKAQY 53
Query: 101 KSCSHMT-----RPDAFHFKFVCYACE----YNTYMSGNIKTHLRLHLDDKPYKC--SLC 149
HM +P C Y+ N+KTHLR H +KPY C C
Sbjct: 54 MLVVHMRRHTGEKP------HKCTFEGCRKSYSR--LENLKTHLRSHTGEKPYMCEHEGC 105
Query: 150 NYECRQNVHLKSHMKSNH 167
+ H H
Sbjct: 106 SKAFSNASDRAKHQNRTH 123
Score = 31.8 bits (73), Expect = 0.055
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 37/134 (27%)
Query: 45 GCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCN-SYISSDIKDLIEHCKSC 103
GC R L H+ +HTGEKP +E C SY E+ K+
Sbjct: 41 GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG------CRKSYSRL------ENLKT- 87
Query: 104 SHM-----TRPDAFHFKFVCYACEYNT-----YMSGNIKTH-LRLHLDDKPYKCSL--CN 150
H+ +P Y CE+ + + H R H ++KPY C L C
Sbjct: 88 -HLRSHTGEKP---------YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCT 137
Query: 151 YECRQNVHLKSHMK 164
L+ H+K
Sbjct: 138 KRYTDPSSLRKHVK 151
Score = 28.3 bits (64), Expect = 0.75
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMKSNH 167
+ C+ E L H+ S H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 35.7 bits (83), Expect = 0.002
Identities = 25/128 (19%), Positives = 35/128 (27%), Gaps = 19/128 (14%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQY-CIHCNSYISSDIKDLIEHCKS 102
C + L H+ P + C K K
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG-------KSFKAKYKL 78
Query: 103 CSHMTRPDAFH-----FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSL--CNYECRQ 155
+H+ H F C S N+K H R H +KP+KC C+
Sbjct: 79 VNHIRV----HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 156 NVHLKSHM 163
+ K HM
Sbjct: 135 SSDRKKHM 142
Score = 31.9 bits (73), Expect = 0.046
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ + C+ L +H+ H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 28.4 bits (64), Expect = 0.78
Identities = 22/93 (23%), Positives = 28/93 (30%), Gaps = 44/93 (47%)
Query: 56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC-KSCSHMTRPDAFHF 114
S NLK H HTGEKPF C E C + ++
Sbjct: 105 SENLKIHKRTHTGEKPFK--------CEF-------------EGCDRRFAN--------- 134
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS 147
S + K H+ +H DK S
Sbjct: 135 -------------SSDRKKHMHVHTSDKSGPSS 154
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 34.4 bits (80), Expect = 0.003
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 44/125 (35%)
Query: 41 KYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHC 100
+ C +S++LK H+ HTGEKP+ HC+ + C
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY-----------HCD----------WDGC 43
Query: 101 -KSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHL 159
+ S + H R H +P++C C+ ++ HL
Sbjct: 44 GWKFAR----------------------SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 160 KSHMK 164
HMK
Sbjct: 82 ALHMK 86
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 33.7 bits (78), Expect = 0.003
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 128 SGNIKTHLR--LHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
N H + K Y C C E + ++ +H+K H
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 28.7 bits (65), Expect = 0.22
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ Y+C +C+ + H ++H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 25.6 bits (57), Expect = 2.6
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 10/45 (22%)
Query: 44 YGCYRCSYFTYESNNLKKH--ILKHTGEKPFSYMYENQQYCIHCN 86
Y C CS +N +H K + C C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP--------CPFCF 47
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
+KPYKC C Q HL++H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 29.4 bits (67), Expect = 0.076
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
Y C C + +L+ H+L HTG P S
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 32.2 bits (74), Expect = 0.008
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ KPY C C + HL H+K H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.8 bits (76), Expect = 0.008
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 127 MSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
M + H + DKPYKC C R +L SH
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
Score = 32.0 bits (74), Expect = 0.016
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
GN+ +H +H +KPY+C++C + + +LK+H +
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 25.1 bits (56), Expect = 4.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C RC NL H HTGEKP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPY 46
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.7 bits (73), Expect = 0.009
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHM 163
+KPY C +C R LKSH+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 31.3 bits (72), Expect = 0.012
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
Y C C LK H+ HTG P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 23.6 bits (52), Expect = 8.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 128 SGNIKTHLRLHLDDKPY 144
+K+HLR+H P
Sbjct: 24 LQTLKSHLRIHTGSGPS 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.010
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C QN HL +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.011
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ + +K YKC +C E Q+ HL++H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 24.4 bits (54), Expect = 4.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
S +++TH R+H +KP S
Sbjct: 25 SSHLQTHQRVHTGEKPSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 31.8 bits (73), Expect = 0.011
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ KPY+C C QN L H + H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 32.5 bits (75), Expect = 0.012
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 18/95 (18%)
Query: 58 NLKKHILKHTGEKPFSYMYENQQYCIHCN---SYISSDIKDLIEHCKSCSHMTRPDAFHF 114
+ HTGEKP++ C HC+ L H K + P+
Sbjct: 2 SSGSSGRTHTGEKPYA--------CSHCDKTFRQKQL----LDMHFKR--Y-HDPNFVPA 46
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC 149
FVC C + H +
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 32.5 bits (75), Expect = 0.013
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 129 GNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
G+ + R H +KPY CS C+ RQ L H K
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 25.9 bits (58), Expect = 3.0
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C +C N + +H G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGV 76
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.2 bits (71), Expect = 0.016
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
R KP++C C+ ++ HL H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.017
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC C QN L SH
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 24.0 bits (53), Expect = 7.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ + +H R+H +KP S
Sbjct: 25 NSQLHSHQRVHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.022
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP++C C QN HL SH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.023
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 142 KPYKCSLCNYECRQNVHLKSHM 163
KP+KCSLC Y R +LK+HM
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
Score = 25.2 bits (54), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
+ C C Y T +NLK H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.023
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC C RQN+HL SH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.028
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C QN HL +H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 23.6 bits (52), Expect = 8.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ ++ H R+H +KP S
Sbjct: 25 NSHLTNHWRIHTGEKPSGPS 44
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.029
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
Y C +CSY + NL H+ KHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 0.98
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
KPYKC C+Y +L H++
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR 30
Score = 25.2 bits (54), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDK 142
+ C C Y + + N+ HLR H +K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.030
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPYKC+ C QN HL H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.030
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+KPY C++C + HL H++
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.032
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ +KPYKC C R+N HL H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.033
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C QN HL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.034
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC +C L H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 24.0 bits (53), Expect = 5.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C + L +H + HT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 23.6 bits (52), Expect = 9.5
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ H +H +KP S
Sbjct: 25 RSRLNRHSMVHTAEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.1 bits (69), Expect = 0.038
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C QN HL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.3 bits (68), Expect = 0.038
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 33 SMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
S + + C C + +L +H L H+GEKP+S
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 25.3 bits (55), Expect = 2.4
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCN 150
+ C C ++ H H +KPY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 24.9 bits (54), Expect = 3.4
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
K C +C R HL H S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 31.3 bits (72), Expect = 0.040
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
++ H H +KPY C +C ++ + H++
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 30.9 bits (71), Expect = 0.049
Identities = 24/114 (21%), Positives = 32/114 (28%), Gaps = 46/114 (40%)
Query: 56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK 115
+L +H L H+GEKP+S C C
Sbjct: 20 VYHLNRHKLSHSGEKPYS--------CPVCG--------------LRFKR---------- 47
Query: 116 FVCYACEYNTYMSGNIKTHLRLHL--DDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ H+R H KPY C C + HL H+K H
Sbjct: 48 ------------KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.040
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC C Q VHL H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.043
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C R N +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.043
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC C +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 24.8 bits (55), Expect = 2.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ H ++H ++P S
Sbjct: 25 KFNLDMHQKVHTGERPSGPS 44
Score = 23.6 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C +C NL H HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.046
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++P+KC+ C Q+ HL H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.052
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C QN HL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.059
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC C ++ + L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.0 bits (53), Expect = 6.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
++ H R+H +K S
Sbjct: 25 RLDLDFHQRVHTGEKLSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.059
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C+ C Q HL H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.059
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC C N SH
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 24.1 bits (53), Expect = 5.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C Y ++ H H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.063
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ K +KC+ C Q+ L H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 30.2 bits (69), Expect = 0.067
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLC 149
++K H++LH D + Y C
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFS 74
Score = 27.9 bits (63), Expect = 0.49
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 56 SNNLKKHILKHTGEKPF 72
+LK+H+ H+ + +
Sbjct: 53 KKHLKEHMKLHSDTRDY 69
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.070
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +K Y C C + L H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 24.0 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C + L KH H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPS 41
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.074
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C R + +L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 24.0 bits (53), Expect = 6.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ TH +H +KP S
Sbjct: 25 HSNLTTHQVIHTGEKPSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.1 bits (66), Expect = 0.079
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
D K Y C+ C + HL H K
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.079
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+KPYKC +C R + HL H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.079
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKCS C ++ HL H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.084
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC C + ++L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 24.0 bits (53), Expect = 6.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ H R+H+ +K S
Sbjct: 25 RLNLDMHQRVHMGEKTSGPS 44
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 30.5 bits (70), Expect = 0.087
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
H+ +HL +PY C +C + + HL HMK
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 25.1 bits (56), Expect = 7.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 127 MSGNIKTHLRLHLDDKPYKCSLC 149
M ++ H+++H KPY+C++C
Sbjct: 49 MKHHLVGHMKIHTGIKPYECNIC 71
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 29.1 bits (66), Expect = 0.088
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C C R L H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 24.5 bits (54), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C ++ L KH H+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPS 41
Score = 23.7 bits (52), Expect = 9.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ + H R+H +KP S
Sbjct: 25 ASCLLKHQRVHSGEKPSGPS 44
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 29.7 bits (68), Expect = 0.092
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
S + H R+H +KPYKC C QN L +H
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 27.0 bits (61), Expect = 0.98
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+H +KPY C C ++ L H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.092
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKCS C L+ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 24.4 bits (54), Expect = 4.0
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
++ H + H ++ S
Sbjct: 25 KSRLRIHQKCHTGERHSGPS 44
Score = 24.0 bits (53), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPF 72
Y C C FT++S L+ H HTGE+
Sbjct: 13 YKCSDCGKSFTWKSR-LRIHQKCHTGERHS 41
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.093
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC +C+ R L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 23.6 bits (52), Expect = 8.7
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
++ H R+H +KP S
Sbjct: 25 GSSLTVHQRIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 29.0 bits (66), Expect = 0.094
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KP++C+ C R +L +H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 24.8 bits (55), Expect = 2.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
GN+ TH R+H +K S
Sbjct: 25 KGNLVTHQRIHTGEKSGPSS 44
Score = 24.0 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C NL H HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 29.4 bits (67), Expect = 0.095
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
++K H R H ++KPY C LCN + L H + H
Sbjct: 15 QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 24.4 bits (54), Expect = 5.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMKS 165
+ + C +C + HLK H +S
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.097
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C +C+ Q HL H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 24.0 bits (53), Expect = 6.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C CS + +L +H HTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.099
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C C + L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.0 bits (66), Expect = 0.10
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C+ C +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 23.6 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C +NL H HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGP 41
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.10
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C C Q +L H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 23.6 bits (52), Expect = 9.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ H R+H +KP S
Sbjct: 25 KANLTQHQRIHTGEKPSGPS 44
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 29.9 bits (68), Expect = 0.10
Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 42/112 (37%)
Query: 56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK 115
N LK H HT + P+ C H
Sbjct: 16 HNQLKVHQFSHTQQLPY-----------------------------ECPH---------- 36
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
C+ + +K H ++H K C++ + H+ H
Sbjct: 37 ---EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 30.1 bits (69), Expect = 0.11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
S N+ H R H D++PY C +C+ R+ HL+ H
Sbjct: 30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Score = 27.8 bits (63), Expect = 0.90
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
S K + C C ++ +L H +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER 38
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 29.7 bits (68), Expect = 0.12
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
S + THL +H D +PY C C Q +K H
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
Score = 27.8 bits (63), Expect = 0.52
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
++K H +H +KP+KC +C Q+ +L +H +
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C+ C +L +H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 24.8 bits (55), Expect = 3.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ TH ++H +KP S
Sbjct: 25 RSNLFTHQKIHTGEKPSGPS 44
Score = 24.4 bits (54), Expect = 5.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C + +NL H HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C Q L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +K YKC+ C +N L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.14
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPY+C+ C Q L H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.15
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC C L +H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 24.4 bits (54), Expect = 5.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
++ TH +H +KP S
Sbjct: 25 RRDLYTHHMVHTGEKPSGPS 44
Score = 23.7 bits (52), Expect = 8.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C +L H + HTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPS 41
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.3 bits (67), Expect = 0.16
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
SG+ + + YKC C + L H
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 27.8 bits (63), Expect = 0.45
Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 44/107 (41%)
Query: 56 SNNLKKHILKHTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFK 115
S + + + + Y+ C C KS SH
Sbjct: 3 SGSSGRSEWQQRERRR----YK----CDECG--------------KSFSH---------- 30
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
S ++ H R H +KPYKC C Q HL H
Sbjct: 31 ------------SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.16
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC C N H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 23.7 bits (52), Expect = 8.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C ++++ +H HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 28.2 bits (64), Expect = 0.18
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C C Q HL H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 28.3 bits (64), Expect = 0.18
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+KC C + L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 24.4 bits (54), Expect = 4.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ H +LH +KP S
Sbjct: 25 RSALNVHHKLHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.18
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C+ C Q L +H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 24.4 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
YGC C + + L H HTGEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPS 41
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 28.4 bits (64), Expect = 0.19
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 56 SNNLKKHILKHTGEKPF 72
S+ L +H H+G KP
Sbjct: 27 SDELSRHRRSHSGVKPS 43
Score = 25.7 bits (57), Expect = 1.7
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 133 THLRLHLDDKPYKCS--LCNYECRQNVHLKSHMK 164
+ +KP+ C+ C + ++ L H +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
Score = 25.3 bits (56), Expect = 2.1
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
S + H R H KP S
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46
Score = 24.2 bits (53), Expect = 6.3
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 62 HILKHTGEKPFS 73
TGEKPF+
Sbjct: 3 SGSSGTGEKPFA 14
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 28.3 bits (64), Expect = 0.19
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+KPY+C C Q L H++
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 27.1 bits (61), Expect = 0.39
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
Y C +C + +L HI HTG P S
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 28.9 bits (64), Expect = 0.20
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
SG+ ++HL D+ KCS C + L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP 40
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.21
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKCS C + L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 23.6 bits (52), Expect = 7.9
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ H + H ++ S
Sbjct: 25 KSGLHIHQQSHTGERHSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.9 bits (63), Expect = 0.23
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP++C+ C + L +H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 24.0 bits (53), Expect = 6.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
S + TH R+H +KP S
Sbjct: 25 SSQLATHQRIHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.23
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP+ C C ++ L H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.27
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ + +K +KC C+ Q L+ H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 24.8 bits (55), Expect = 3.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ +++ H +H+ +KP S
Sbjct: 25 ASSLRLHQNVHVGEKPSGPS 44
Score = 23.7 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPF 72
+ C C F+ S+ L+ H H GEKP
Sbjct: 13 WKCRECDMCFSQASS-LRLHQNVHVGEKPS 41
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.27
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++ Y+CS C Q L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.27
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPY+C C Q HL H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.28
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C C + L H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.29
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ K ++C+ C + L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.30
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPY C+ C L +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.30
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+CS C + L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.31
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPYKC+ C R L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.31
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ + P+ CS C +L H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 24.0 bits (53), Expect = 6.1
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C NL H HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.1 bits (64), Expect = 0.34
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 115 KFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+FVC C S ++K H+R + C +C E H+ H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.34
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY C+ C +L H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 23.6 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C +NL KH HT +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPS 41
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.35
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+CS+C + L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.3 bits (67), Expect = 0.35
Identities = 34/133 (25%), Positives = 42/133 (31%), Gaps = 44/133 (33%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIHCN---SYISSDIKDLIEH- 99
Y C C + NL+ H HTGEKP Y C C S ++ L H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKP----YA----CPECGKSFSQLAH----LRAHQ 125
Query: 100 ----------CKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCSLC 149
C C +F N+ TH R H +KPYKC C
Sbjct: 126 RTHTGEKPYKCPECGK-----SF-------------SREDNLHTHQRTHTGEKPYKCPEC 167
Query: 150 NYECRQNVHLKSH 162
+ L H
Sbjct: 168 GKSFSRRDALNVH 180
Score = 29.3 bits (67), Expect = 0.42
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
S + L +KPY C C ++ HL H
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 29.3 bits (67), Expect = 0.47
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
++ H R H +KPYKC C Q +L++H
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 28.9 bits (66), Expect = 0.63
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
S ++ H R H +KPYKC C L H
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (62), Expect = 0.40
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ PYKCS C + L H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 24.4 bits (54), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPF 72
Y C +C F+ + L H HT EKP
Sbjct: 13 YKCSQCEKSFSGKLR-LLVHQRMHTREKPS 41
Score = 23.7 bits (52), Expect = 7.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
+ H R+H +KP S
Sbjct: 25 KLRLLVHQRMHTREKPSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 28.1 bits (63), Expect = 0.42
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 56 SNNLKKHILKHTGEKPFS 73
S++LK H HTGEKPFS
Sbjct: 32 SSHLKAHTRTHTGEKPFS 49
Score = 27.0 bits (60), Expect = 0.87
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 104 SHMTRPDAFHFKFVCYACEYN----TYM-SGNIKTHLRLHLDDKPYKCSL--CNYECRQN 156
S + P + + C + TY S ++K H R H +KP+ CS C ++
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 157 VHLKSHMKS 165
L H ++
Sbjct: 63 DELSRHRRT 71
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.43
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++PY C++C +L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 24.0 bits (53), Expect = 7.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C + +NL KH HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 23.6 bits (52), Expect = 9.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
N+ H ++H +KP S
Sbjct: 25 RSNLIKHQKIHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.44
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++P+KC+ C + HL H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.44
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++ ++CS C Q + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 25.2 bits (56), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C C F +++N +H HTGEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPS 41
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.1 bits (61), Expect = 0.46
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPY C+ C R +L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 23.6 bits (52), Expect = 9.2
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C + L H HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGP 41
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.47
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP++C C N L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.49
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C +C + L H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.51
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY CS C +L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 24.8 bits (55), Expect = 3.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
YGC C + L H+ H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 28.0 bits (62), Expect = 0.60
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 45 GCYRCSYFTYESNNLKKHILKHTGEKPF 72
C R L HI HTGEK
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKSG 91
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.64
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +PY+C C + L H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 23.7 bits (52), Expect = 7.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
Y C C ++L H HTGEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPS 41
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.65
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+CS C + L H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.66
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP++CS C +L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 23.6 bits (52), Expect = 8.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 116 FVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS 147
F C C+ N+ H R H +KP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.8 bits (60), Expect = 0.66
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPFS 73
+ C C F++ S +L KH+ H P
Sbjct: 13 FQCKECGMNFSW-SCSLFKHLRSHERTDPSG 42
Score = 24.1 bits (53), Expect = 6.0
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMKS 165
+ +KP++C C + L H++S
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 23.7 bits (52), Expect = 7.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 128 SGNIKTHLRLHLDDKPYKCS 147
S ++ HLR H P S
Sbjct: 25 SCSLFKHLRSHERTDPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 26.7 bits (60), Expect = 0.73
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ KPY CS C L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 23.6 bits (52), Expect = 7.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
YGC +C+ + L H HTG KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 29.1 bits (65), Expect = 0.77
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 38 DSFKYKYGCYRCSYFTYESNNLKKHILKHTGEKPFSYMYENQQYCIH 84
S KY+ G + +Y+ I G F+ M + + +
Sbjct: 911 RSLKYQQGEWSRIPLSYDDVTGTLIIGDRVGS--FTGMADERNIRVR 955
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.8 bits (61), Expect = 0.79
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+ + + Y+C C ++ H+ S H
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.79
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ K ++C C HL H +
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.7 bits (59), Expect = 0.79
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ + P+KCS C+ Q +L H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.79
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 138 HLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+KPY C +C ++ + H++S+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.80
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C+ C L +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 26.5 bits (59), Expect = 0.80
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
Y C +C + +L H + P S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 23.8 bits (52), Expect = 8.2
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ PY C C Q L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.88
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ ++ Y+CS C + L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 28.3 bits (64), Expect = 1.00
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 81 YCIHCN-SYISSDIKDLIE--HCKSCSHMTRPD 110
C CN S+ + C C + RP
Sbjct: 123 RCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPG 155
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.1
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ + PY+C C + L SH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 26.0 bits (58), Expect = 1.2
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KPY+C+ C L H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 23.6 bits (52), Expect = 8.9
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPFS 73
Y C C F ++S L H H G S
Sbjct: 13 YECNECGKAFIWKSL-LIVHERTHAGVSGPS 42
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+KPY+CS+C L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.2 bits (59), Expect = 1.7
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 81 YCIHCNSYISSDIKDLIEHCKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLD 140
C C++ + S+ + H +S H + + +
Sbjct: 34 QCKVCSAVLISE-SQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDG--E 90
Query: 141 DKPYKCSLCNYECRQNVHLKSHMKS 165
D+ C +CN V +SH
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIG 115
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 27.2 bits (60), Expect = 1.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 118 CYACEYNTYMSGNIKTHLRLHLDDKP 143
Y C Y+TY G + L + +
Sbjct: 85 EYFCIYHTYPDGTYTGRIFLEVLESS 110
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 25.2 bits (54), Expect = 1.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMKSNH 167
K Y+C C + + +LK+H+K+ H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 27.7 bits (61), Expect = 1.8
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 18 TKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNN--LKKHILKHTGEKPFSYM 75
+S ++IV T I + + Y N + H+ E F +
Sbjct: 115 VRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGL 174
Query: 76 YENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPD 110
+ ++ + + K+ + T PD
Sbjct: 175 TPDTEFLGTIMILVPTWAKESAPYMCRV--KTLPD 207
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.8
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
++PY C+ C ++ HL H+K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 24.0 bits (53), Expect = 7.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
YGC C ++L +H+ +H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSG 42
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 80 QYCIHCN-SYISSDIKDLIE-----HCKSCSHMTRPD 110
YC+ C Y D+ +E C C+ + RP+
Sbjct: 122 YYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN 158
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 2.1
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 79 QQYCIHCNSYISSDIKDLIEHCKSCSHMTR 108
C+ C Y +L H +S H R
Sbjct: 50 LHRCLACARYFIDS-TNLKTHFRSKDHKKR 78
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 27.2 bits (61), Expect = 2.6
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 53/127 (41%)
Query: 47 YRCSY------FTYESNNLKKHILKHTGEKPFSYMYE-NQQYCIHCNSYISSDIKDLIEH 99
Y CS+ + L+ H+ KHTGEKP + ++ C
Sbjct: 13 YICSFADCGAAYNKNWK-LQAHLCKHTGEKP----FPCKEEGC----------------- 50
Query: 100 CKSCSHMTRPDAFHFKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKCS--LCNYECRQNV 157
K + ++ H H +K + C C+
Sbjct: 51 EKGFTS----------------------LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 88
Query: 158 HLKSHMK 164
++K H
Sbjct: 89 NMKKHFN 95
Score = 26.4 bits (59), Expect = 4.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 134 HLRLHLDDKPYKCSLCNYEC----RQNVHLKSHMK 164
L + K Y CS +C +N L++H+
Sbjct: 3 EKALPVVYKRYICSF--ADCGAAYNKNWKLQAHLC 35
Score = 25.6 bits (57), Expect = 7.7
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 128 SGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
+K H ++H K C++ + H+ H
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.0 bits (55), Expect = 2.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 138 HLDDKPYKCSLCNYECRQNVHLKSHMK 164
+KPY C+ C N L H K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK 31
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 26.9 bits (60), Expect = 3.1
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 41 KYKYGCYRCS--YFTYESNNLK------KHILKHTGEKPFSYMYENQQYCIH 84
+ + G YR +F +++ + + L+ EKP +YE + +H
Sbjct: 198 RMESGQYRSLDWWFCWDTPASRDDVEEARRYLRRAAEKPAKLLYEEARTHLH 249
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.3 bits (54), Expect = 3.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 139 LDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
++P C +C RQ+ +L+ H++ H
Sbjct: 20 QSEQPATCPICYAVIRQSRNLRRHLELRH 48
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 24.8 bits (55), Expect = 3.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
Y C C + +L H HTG P S
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 24.5 bits (54), Expect = 4.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 142 KPYKCSLCNYECRQNVHLKSH 162
+ Y+C C RQ L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.8
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 22/102 (21%)
Query: 12 HCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCY-RCSY--FTYES----NNLKKHIL 64
H T S IV + +++ F + G R +Y +E+ + I
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 65 KHTGEKPFSYMY----------ENQQYCIHCNSY-ISSDIKD 95
K E SY + + Q + D+K
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 26.6 bits (59), Expect = 4.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 81 YCIHCN-SYISSDIKDLIE-----HCKSCSHMTRPDAFHF 114
C C + DI+ + C C+ + +PD F
Sbjct: 141 TCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFF 180
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.5 bits (54), Expect = 4.8
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+K + C C L+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 23.7 bits (52), Expect = 5.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 56 SNNLKKHILKHTGEK 70
S+ L++H HTGEK
Sbjct: 17 SDELQRHKRTHTGEK 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 5.9
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 133 THLRLHLDDKPYKCSLCNYECRQNVHLKSH 162
+ +KP KC+ C L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 23.7 bits (52), Expect = 8.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 44 YGCYRCS-YFTYESNNLKKHILKHTGEKPF 72
C C F ++S L H H +K
Sbjct: 13 CKCTECGKAFCWKSQ-LIMHQRTHVDDKHS 41
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 25.7 bits (56), Expect = 5.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 118 CYACEYNTYMSGNIKTHLRL 137
Y CE+ T+ G+++ L
Sbjct: 107 NYTCEFATFPKGSVRGMTWL 126
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 23.7 bits (50), Expect = 6.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 143 PYKCSLCNYECRQNVHLKSHMKSN 166
PY+C LC C +++HM+ +
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGH 26
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.0 bits (53), Expect = 7.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+GC C + L H H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 25.8 bits (57), Expect = 7.3
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 80 QYCIHCN-SYISSDIKDLIE--------HCKSCSHMTRPDAFHF 114
+CI C Y K + C C + +P F
Sbjct: 137 CHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFF 180
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.6 bits (50), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
Y C C + L++H+ HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 25.9 bits (57), Expect = 7.7
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 81 YCIHCN---SYISSDIKDLIE-----HCKSCSHMTRPD 110
+C+ + Y S +K+ I C+ C + +PD
Sbjct: 161 HCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPD 198
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 25.7 bits (56), Expect = 9.2
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 9/43 (20%)
Query: 81 YCIHCN-SYISSDIKDLIE--------HCKSCSHMTRPDAFHF 114
+CI C Y K + C C + +P F
Sbjct: 146 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFF 188
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 25.5 bits (55), Expect = 9.3
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 7/114 (6%)
Query: 11 VHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKKHILKHTGEK 70
VH + ++ V + + ++ K C N IL K
Sbjct: 111 VHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRK 170
Query: 71 PFSYMYENQQYCIHCNSYISSDIKDLIEHCKS-------CSHMTRPDAFHFKFV 117
+ +++ + S + I F +K++
Sbjct: 171 TVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYI 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.443
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,429,079
Number of extensions: 130763
Number of successful extensions: 1332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 591
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)