RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4421
(167 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.6 bits (75), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
R H +KPY+C +C+ Q+ +K H+ H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 3.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
Y CY C +S +K HIL+ E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.9 bits (73), Expect = 0.003
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 141 DKPYKCSLCNYECRQNVHLKSHMKSNH 167
KPY C C + HL H+K H
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 27.3 bits (61), Expect = 0.16
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 44 YGCYRCSYFTYESNNLKKHILK-HTGEKPF 72
Y C C ++L HI + HT E+P
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPH 35
Score = 24.6 bits (54), Expect = 1.1
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 116 FVCYACEYNTYMSGNIKTHLRL-HLDDKPYKCSL 148
++C +C ++ H++ H ++P+KC +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 31.7 bits (72), Expect = 0.004
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
+ + YKC C + L H +
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 25.1 bits (55), Expect = 0.93
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGE 69
Y C C S++L KH HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 31.6 bits (72), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 134 HLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
R KP++C C+ ++ HL H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.6 bits (72), Expect = 0.004
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 136 RLHLDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
R H +KPY CS C+ RQ L H K H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 23.1 bits (50), Expect = 4.5
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
Y C C + L H ++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.9 bits (68), Expect = 0.012
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 138 HLDDKPYKCSLCNYECRQNVHLKSHMK 164
H +KPY C C ++ L H +
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 25.7 bits (57), Expect = 0.43
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGE 69
YGC C S+ L +H HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.5 bits (64), Expect = 0.040
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
K + C C ++ HL H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
Score = 27.3 bits (61), Expect = 0.098
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
+ C C S++L KHI H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.0 bits (63), Expect = 0.061
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
+ + C +C + HLK H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 26.0 bits (58), Expect = 0.31
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGEK 70
+ C C+ +LK+H HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 27.6 bits (62), Expect = 0.091
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
KP++C +C ++ HL +H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
Score = 21.8 bits (47), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTG 68
+ C C S++L HI HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 27.4 bits (61), Expect = 0.13
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 138 HLDDKPYKCSLCNYECRQNVHLKSHMK 164
+P+ C +C + H+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.0 bits (60), Expect = 0.16
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 42 YKYGCYRCSYFTYESNNLKKHILKHTGEKPF 72
+ C +LK+H+ H+ + +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 32
Score = 25.1 bits (55), Expect = 0.92
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 114 FKFVCYACEYNTYMSGNIKTHLRLHLDDKPYKC 146
F AC + ++K H++LH D + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.9 bits (59), Expect = 0.19
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 141 DKPYKCSLCNYECRQNVHLKSHMKSN 166
++P+KC +C Y R + L H++S+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
Score = 22.7 bits (48), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 44 YGCYRCSYFTYESNNLKKHILKHTGE 69
+ C C Y + S+ L H+ HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 27.4 bits (61), Expect = 0.21
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 77 ENQQYCIHCNSYISSDIKDLIEHCKSCSHMTR 108
C+ C Y +L H +S H R
Sbjct: 13 GGLHRCLACARYFIDS-TNLKTHFRSKDHKKR 43
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 28.9 bits (64), Expect = 0.23
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 66 HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKSCSHMTRPDA 111
G+ PF + E + + +SS+ + LI C + RP
Sbjct: 204 VCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTF 249
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.3 bits (57), Expect = 0.27
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMKSNH 167
K Y+C C + + +LK+H+K+ H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.4 bits (58), Expect = 0.36
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 42 YKYGCYRCSYFTYESNNLKKHILKHTGEK 70
++ C+ N++ HI H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 0.45
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 53 TYESNNLKKHILKHTGEKPFSYMYENQQYCIHCNSY 88
T ++ K++ K +K F ++
Sbjct: 1 TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYN 35
Score = 23.4 bits (50), Expect = 3.9
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 125 TYMSGNIKTHLRLHLDDKPYKCSLCNYECR--QNVHLKSHMK 164
T G+I +++ + DK ++C + +++SH++
Sbjct: 1 TLPRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.7 bits (56), Expect = 0.40
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMKSNH 167
+P+KC+ C+++ +Q +L HMK H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 26.2 bits (57), Expect = 0.49
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 121 CEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYECRQNVHLKSHMK 164
C + H+ +HL +PY C +C + + HL HMK
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 27.9 bits (61), Expect = 0.54
Identities = 12/143 (8%), Positives = 36/143 (25%), Gaps = 11/143 (7%)
Query: 2 QESLNINQCVHCHLTLTKSTEVIVKHAQTCISMVRPDSFKYKYGCYRCSYFTYESNNLKK 61
+ + N V + T+ + I++ + + + D G + + +
Sbjct: 37 NDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNA 96
Query: 62 HILKHTGEKPFSYM------YENQQYCIHCNSYISSDIKDLIEHCKSCS-----HMTRPD 110
++ + + + ++ + H+T
Sbjct: 97 DLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSL 156
Query: 111 AFHFKFVCYACEYNTYMSGNIKT 133
A + T M + T
Sbjct: 157 AAKDSGLPDNSAVLTIMPVTLDT 179
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.0 bits (55), Expect = 0.68
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 42 YKYGCYRCSYFTYESNNLKKHILKHTGEK 70
+ C S+ L++H HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.8 bits (52), Expect = 2.1
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 142 KPYKCSL--CNYECRQNVHLKSHMK 164
+P+ C+ C ++ L+ H +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.0 bits (54), Expect = 0.81
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 41 KYKYGCYRCSYFTYESNNLKKHILKHTGEKPFS 73
+ + C C + +L +H L H+GEKP+S
Sbjct: 3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 24.3 bits (52), Expect = 2.0
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 139 LDDKPYKCSLCNYECRQNVHLKSHMKSNH 167
++P C +C RQ+ +L+ H++ H
Sbjct: 20 QSEQPATCPICYAVIRQSRNLRRHLELRH 48
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 25.9 bits (56), Expect = 2.8
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 67 TGEKPFSYMYENQQYCIHCN------SYISSDIKDLIEHCKSCSHMTRPDA 111
G+ PF E + + ++ + KDL+ R
Sbjct: 198 IGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGV 248
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 46 CYRCSYFTYESNNLKKHILKHTGE 69
C C ES+ LK+H L HTGE
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.3 bits (51), Expect = 2.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 142 KPYKCSLCNYECRQNVHLKSHMK 164
KPYKC C QN L +H +
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQR 23
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.9 bits (49), Expect = 3.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 43 KYGCYRCSYFTYESNNLKKHILKHTGEK 70
KY C C + + LKKHI HT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 23.1 bits (50), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 142 KPYKCS--LCNYECRQNVHLKSHMK 164
KP+KC+ C + +LK+H++
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLR 25
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 25.3 bits (55), Expect = 4.0
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 67 TGEKPFSYMYENQQ---------YCIHCNSYISSDIKDLIEHCKSCSHMTRPDA 111
T E P+S Q + ++K++IE C + R
Sbjct: 207 TSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSI 260
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 24.9 bits (54), Expect = 4.9
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 67 TGEKPFSYMYENQQYCIHCN------SYISSDIKDLIEHCKSCSHMTRPDA 111
G+ PF + Y +++ +DLI + RP
Sbjct: 199 VGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPML 249
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 24.9 bits (54), Expect = 5.1
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 8/92 (8%)
Query: 66 HTGEKPFSYMYENQQYCIHCNSYISSDIKDLIEHCKS-----CSHMTRPDAFHFKFVCYA 120
+ K S + I + + H + RP F+ + V
Sbjct: 124 PSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDN 183
Query: 121 CEYNTYMSGNIKTHLRLHLDDKPYKCSLCNYE 152
C + + D + K C YE
Sbjct: 184 CPRLPHFEASEFAP---SFDSEEAKKGFCLYE 212
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 25.0 bits (54), Expect = 5.8
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 66 HTGEKPFSYMYENQQYCIHCN-------SYISSDIKDLIEHCKSCSHMTRPDA 111
PF+ + + S ++ ++I + RP
Sbjct: 208 CALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSV 260
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 22.7 bits (49), Expect = 6.2
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 141 DKPYKCS--LCNYECRQNVHLKSHMK 164
D+PY C C+ +N L H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 24.6 bits (53), Expect = 6.6
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 9/54 (16%)
Query: 67 TGEKPFSYMYENQQ---------YCIHCNSYISSDIKDLIEHCKSCSHMTRPDA 111
GE P+ + + +S+ +D + C R A
Sbjct: 211 EGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSA 264
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 24.7 bits (53), Expect = 7.1
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 67 TGEKPFSYMYENQQYCIHCN------SYISSDIKDLIEHC 100
G PF + Y N + + D+KDL+
Sbjct: 196 AGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRL 235
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 22.1 bits (46), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 143 PYKCSLCNYECRQNVHLKSHMKSNH 167
PYKCS C+ + Q L+SHM H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 24.2 bits (52), Expect = 9.5
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 9/54 (16%)
Query: 67 TGEKPFSYMYENQQYCIHCN---------SYISSDIKDLIEHCKSCSHMTRPDA 111
E P + + S SS+ KD ++ C + R
Sbjct: 210 EIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTT 263
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 24.2 bits (52), Expect = 9.6
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 10/55 (18%)
Query: 67 TGEKPFSYMYENQQYCIHCN----------SYISSDIKDLIEHCKSCSHMTRPDA 111
+G PF Q N IS + D ++ +R A
Sbjct: 198 SGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA 252
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 21.9 bits (47), Expect = 10.0
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 142 KPYKCS--LCNYECRQNVHLKSHMK 164
+PY C C+ ++ L H++
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIR 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.443
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 650,777
Number of extensions: 31370
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 162
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)