BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4429
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 27/160 (16%)
Query: 26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTG 85
PN+ ++ Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LPF K ++ TP
Sbjct: 14 PNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLD 73
Query: 86 ATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCR 145
+YHG+ + CGVS++R+GE+ME GLR CR +RIGKI
Sbjct: 74 VSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKI-------------------- 113
Query: 146 SIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPI 185
LI+ D T E +++Y + P DI +R V+L+ P+
Sbjct: 114 -------LIQRDETTAEPKLIYEKLPADIRERWVMLLDPM 146
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 27/160 (16%)
Query: 26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTG 85
PN+ ++ Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LPF K ++ TP
Sbjct: 33 PNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLD 92
Query: 86 ATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCR 145
+YHG+ + CGVS++R+GE+ME GLR CR +RIGKI
Sbjct: 93 VSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKI-------------------- 132
Query: 146 SIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPI 185
LI+ D T E +++Y + P DI +R V+L+ P+
Sbjct: 133 -------LIQRDETTAEPKLIYEKLPADIRERWVMLLDPM 165
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%)
Query: 42 TILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVS 101
TI+RDKNT +F+ + L+ E+ L ++++ TP T ++ V
Sbjct: 29 TIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVP 88
Query: 102 VIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEA 136
++R+G M G+ + + +G I I D +T +A
Sbjct: 89 ILRAGLVMADGILELLPNASVGHIGIYRDPETLQA 123
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 42 TILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVS 101
T +RDKNT +F+ D + L+ E LP +++I TP + + +
Sbjct: 17 TYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIP 76
Query: 102 VIRSGEAMEQGLRDCCRSIRIGKILIESDADT 133
++R+G M G+ + ++G I + D T
Sbjct: 77 ILRAGIGMVDGILKLIPAAKVGHIGLYRDPQT 108
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 25 IPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPT 84
PNL IL + ++ T +RDK+TS F+ + L+ E LP + + TP
Sbjct: 8 FPNLFIL-DHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPL 66
Query: 85 GATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTH 134
+ + V V+R+G M GL + S R+G I + AD H
Sbjct: 67 VEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYR-ADDH 115
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 27/143 (18%)
Query: 44 LRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVI 103
LRDK T DF+ A+ + L E+ L + + TP V V+
Sbjct: 18 LRDKRTGPKDFRELAEEVAXLXAYEAXRDLELEETTVETPIAPAR-----------VKVL 66
Query: 104 RSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEA 163
SG+ + +R G + +E G+ R+G I + D ++
Sbjct: 67 -SGKKLA-----LVAILRAGLVXVE----------GILKLVPHARVGHIGLYRDPESLNP 110
Query: 164 RIVYARFPEDIAQRKVLLMYPIM 186
Y + P DIA+R+ L+ P +
Sbjct: 111 VQYYIKLPPDIAERRAFLLDPXL 133
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 39 ELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGN- 97
+ T LRDK T + +F+ RL R++ E N L + +++ TP G G+ N
Sbjct: 13 HILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNN 72
Query: 98 -CGVSVIRSGEAMEQGLRDCCRSIRIGKI 125
++++R+ + +GL R G I
Sbjct: 73 IVIINILRAAVPLVEGLLKAFPKARQGVI 101
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 17 KYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFS 76
K + F + P LK + + + + DKNT R ++L +E + +L
Sbjct: 414 KVIGFYNNTPQLKFICRRNLILSINI---DKNTERD---------LQLSVESAAKRLSEE 461
Query: 77 KMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSI 120
K++++ ++Y + + G+ + SGE E L+DCC +
Sbjct: 462 KIEVID--FSSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCL 503
>pdb|4FTD|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03550)
From Bacteroides Eggerthii Dsm 20697 At 1.91 A
Resolution
Length = 453
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 11 VPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESL 70
VPI+ K V DI N+K+LPS + + R +T + + + R+ +++ESL
Sbjct: 274 VPISGHKTV----DIGNIKVLPSKSDATXVTNVYRVGDTDQ--YLWSGIRVPVTLVDESL 327
Query: 71 NQLPFSKM--DIVTPTGATYHGLKY 93
+ SK+ + V P T++ +Y
Sbjct: 328 GEKYKSKIAGEAVAPKVVTFNEERY 352
>pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp
Length = 167
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQL 73
N IL DQ+ ++TIL++KN D K F R I I + N+L
Sbjct: 112 NFSILDPTDQLSVMKTILKEKNI---DPKKFEPRTILGTISAAKNEL 155
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
pdb|1PJR|A Chain A, Structure Of Dna Helicase
Length = 724
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQL 73
N IL DQ+ ++TIL++KN D K F R I I + N+L
Sbjct: 112 NFSILDPTDQLSVMKTILKEKNI---DPKKFEPRTILGTISAAKNEL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,169,471
Number of Sequences: 62578
Number of extensions: 202080
Number of successful extensions: 518
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)