Query psy4429
Match_columns 186
No_of_seqs 123 out of 1075
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 16:51:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 6.1E-42 1.3E-46 289.7 14.4 132 26-186 2-134 (210)
2 PF14681 UPRTase: Uracil phosp 100.0 3.2E-40 6.9E-45 275.6 10.3 128 32-186 2-131 (207)
3 PLN02541 uracil phosphoribosyl 100.0 3.9E-39 8.4E-44 277.5 13.4 133 26-186 31-167 (244)
4 KOG1017|consensus 100.0 5.9E-39 1.3E-43 272.4 8.0 136 24-186 64-199 (267)
5 TIGR01091 upp uracil phosphori 100.0 1E-36 2.3E-41 254.4 13.9 131 27-186 1-132 (207)
6 PRK00129 upp uracil phosphorib 100.0 1.5E-35 3.3E-40 247.5 13.7 131 27-186 3-134 (209)
7 KOG4203|consensus 99.9 8.5E-25 1.8E-29 203.2 6.6 136 23-186 261-396 (473)
8 TIGR01203 HGPRTase hypoxanthin 97.7 5.6E-05 1.2E-09 61.5 5.6 65 95-186 26-94 (166)
9 PLN02369 ribose-phosphate pyro 97.3 0.00043 9.2E-09 61.6 5.9 62 95-186 151-212 (302)
10 PRK05205 bifunctional pyrimidi 97.1 0.00079 1.7E-08 54.9 5.1 67 95-186 31-105 (176)
11 PRK03092 ribose-phosphate pyro 95.7 0.022 4.7E-07 50.8 5.7 64 95-186 148-211 (304)
12 PTZ00271 hypoxanthine-guanine 91.8 0.43 9.2E-06 40.8 5.7 95 49-186 28-128 (211)
13 PRK15423 hypoxanthine phosphor 90.0 0.68 1.5E-05 38.3 5.2 88 50-186 10-102 (178)
14 PTZ00149 hypoxanthine phosphor 88.1 0.76 1.7E-05 40.2 4.4 89 49-186 58-160 (241)
15 PLN02238 hypoxanthine phosphor 87.6 1.4 3E-05 36.6 5.5 63 96-185 36-106 (189)
16 PRK02812 ribose-phosphate pyro 87.5 1.4 2.9E-05 40.1 5.7 62 95-186 179-240 (330)
17 PF00156 Pribosyltran: Phospho 85.1 0.52 1.1E-05 34.8 1.5 67 99-185 31-97 (125)
18 PRK09162 hypoxanthine-guanine 84.2 6.3 0.00014 32.3 7.7 54 49-125 17-71 (181)
19 TIGR01251 ribP_PPkin ribose-ph 83.2 2.5 5.5E-05 37.5 5.3 62 95-186 159-220 (308)
20 PRK06827 phosphoribosylpyropho 75.2 5.6 0.00012 37.0 5.1 24 163-186 251-274 (382)
21 PRK09177 xanthine-guanine phos 72.1 8 0.00017 31.2 4.7 23 96-118 32-54 (156)
22 COG2236 Predicted phosphoribos 67.4 9.6 0.00021 32.4 4.4 31 95-125 29-59 (192)
23 COG2065 PyrR Pyrimidine operon 67.3 11 0.00024 31.9 4.7 90 50-186 8-106 (179)
24 PRK01259 ribose-phosphate pyro 63.6 16 0.00035 32.6 5.3 30 95-125 158-187 (309)
25 COG0634 Hpt Hypoxanthine-guani 48.7 46 0.00099 28.3 5.3 64 95-186 35-103 (178)
26 PRK00934 ribose-phosphate pyro 39.1 46 0.001 29.3 4.2 29 96-125 155-183 (285)
27 COG1218 CysQ 3'-Phosphoadenosi 31.9 65 0.0014 28.9 4.0 22 104-125 49-70 (276)
28 PRK02277 orotate phosphoribosy 31.7 99 0.0021 25.7 4.8 27 98-125 88-114 (200)
29 PF12852 Cupin_6: Cupin 31.5 1.3E+02 0.0029 23.9 5.4 48 25-72 131-183 (186)
30 PF04444 Dioxygenase_N: Catech 29.6 70 0.0015 23.2 3.1 31 34-64 9-39 (74)
31 TIGR01090 apt adenine phosphor 28.7 96 0.0021 24.8 4.1 24 98-122 49-72 (169)
32 PRK02458 ribose-phosphate pyro 24.2 2.1E+02 0.0046 25.8 5.9 30 95-125 169-198 (323)
33 PRK02304 adenine phosphoribosy 23.3 1.2E+02 0.0026 24.3 3.8 25 97-122 53-77 (175)
34 PRK04923 ribose-phosphate pyro 22.6 2E+02 0.0044 25.9 5.5 62 95-186 166-227 (319)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.1e-42 Score=289.71 Aligned_cols=132 Identities=34% Similarity=0.561 Sum_probs=127.0
Q ss_pred CCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeee-ccceeeeecc
Q psy4429 26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIR 104 (186)
Q Consensus 26 ~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~-~~ic~VsILR 104 (186)
.+++++ +||+++|++|+|||++|++++||++++||+++|+|||+++||+++.+|+||.|. ++|..+. +++|+|||||
T Consensus 2 ~~v~vi-~hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~~-~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVI-DHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGP-TEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEe-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCcc-eeeeeecCCcEEEEEEee
Confidence 467788 899999999999999999999999999999999999999999999999999995 6899997 5599999999
Q ss_pred cchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEECC
Q psy4429 105 SGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYP 184 (186)
Q Consensus 105 AG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllDP 184 (186)
||++|++|+++++|+|++||| |+|||++|++|..||.|||++++++.|+|+||
T Consensus 80 AGl~m~~gl~~~~P~a~vG~i---------------------------g~~Rdeet~~p~~yy~KLP~~~~~~~viv~DP 132 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHI---------------------------GIYRDEETLEPVLYYEKLPEDIDERTVIVLDP 132 (210)
T ss_pred ccccHHHHHHHhCCcceEEEE---------------------------EEEecCccCceehhHHhCCCcccCCeEEEECc
Confidence 999999999999999999999 99999999999999999999999999999999
Q ss_pred CC
Q psy4429 185 IM 186 (186)
Q Consensus 185 mL 186 (186)
||
T Consensus 133 ML 134 (210)
T COG0035 133 ML 134 (210)
T ss_pred hh
Confidence 97
No 2
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=3.2e-40 Score=275.61 Aligned_cols=128 Identities=41% Similarity=0.743 Sum_probs=118.8
Q ss_pred CCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcC-CCCeeEEeeCCCCceeeeeeeec-cceeeeecccchhH
Q psy4429 32 PSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQ-LPFSKMDIVTPTGATYHGLKYER-GNCGVSVIRSGEAM 109 (186)
Q Consensus 32 ~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~-Lp~~~~~V~TP~g~~~~G~~~~~-~ic~VsILRAG~~m 109 (186)
++||++++++|+|||++|++.+||+|++||+++|+|||+++ +|+++.+|+||+|.++.|..... ++|+|||||||++|
T Consensus 2 ~~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m 81 (207)
T PF14681_consen 2 PQHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLPM 81 (207)
T ss_dssp EB-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHHH
Confidence 48999999999999999999999999999999999999997 99999999999999998876654 99999999999999
Q ss_pred HHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 110 EQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 110 ~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllDPmL 186 (186)
+++|++++|+|++||| ++|||++|++|++||+|||+++++++|||+|||+
T Consensus 82 ~~~~~~~~p~a~~g~i---------------------------~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpml 131 (207)
T PF14681_consen 82 LEGFREVFPDARVGHI---------------------------GIQRDEETLEPVLYYNKLPEDIENRKVILLDPML 131 (207)
T ss_dssp HHHHHHHSTTSEEEEE---------------------------EEEEETTTSSEEEEEEE--TTGTTSEEEEEESEE
T ss_pred HHHHHHhCCCcceEEE---------------------------EEEEcCCccceeeeHhhCCCCccCCEEEEEeccc
Confidence 9999999999999999 9999999999999999999999999999999996
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=3.9e-39 Score=277.53 Aligned_cols=133 Identities=19% Similarity=0.313 Sum_probs=123.7
Q ss_pred CCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcC-CCCeeEEeeCCCCceeeeeeee--ccceeeee
Q psy4429 26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQ-LPFSKMDIVTPTGATYHGLKYE--RGNCGVSV 102 (186)
Q Consensus 26 ~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~-Lp~~~~~V~TP~g~~~~G~~~~--~~ic~VsI 102 (186)
++++++++|||+++++|+|||++|++.+||+|++||+++|+|||+++ ||+++++|+||+|.+ .+..+. +++|+|||
T Consensus 31 ~~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~~-~~~~~~~~~~i~~V~I 109 (244)
T PLN02541 31 QMLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGVA-DVEFIDPREPVAVVPI 109 (244)
T ss_pred cceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCeE-EEEeecCCCcEEEEeE
Confidence 46678889999999999999999999999999999999999999977 999999999999975 455454 45999999
Q ss_pred cccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCC-CCeEEE
Q psy4429 103 IRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIA-QRKVLL 181 (186)
Q Consensus 103 LRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~-~~~Vll 181 (186)
||||++|++|++++||++++||| +++||+.|.+|++||.|||++++ ++.|+|
T Consensus 110 LRAGl~m~~g~~~~~P~a~vg~i---------------------------~~~rd~~t~e~~~yy~kLP~~i~~~~~Vll 162 (244)
T PLN02541 110 LRAGLVLLEHASSVLPATKTYHL---------------------------GFVRDEETLQPSMYLNKLPDKFPEGSRVLV 162 (244)
T ss_pred eCCcHhHHHHHHhhCCCCeeEEE---------------------------EEEEcccccceEEeeccCchhcCCCCEEEE
Confidence 99999999999999999999999 99999999999999999999997 479999
Q ss_pred ECCCC
Q psy4429 182 MYPIM 186 (186)
Q Consensus 182 lDPmL 186 (186)
+||||
T Consensus 163 lDpmL 167 (244)
T PLN02541 163 VDPML 167 (244)
T ss_pred ECcch
Confidence 99997
No 4
>KOG1017|consensus
Probab=100.00 E-value=5.9e-39 Score=272.41 Aligned_cols=136 Identities=71% Similarity=1.132 Sum_probs=132.0
Q ss_pred CCCCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeec
Q psy4429 24 DIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVI 103 (186)
Q Consensus 24 ~~~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsIL 103 (186)
+-.|++.++-+.|++.++|++||++|+++||.|++|||+||++||.|++|||.+..|+||+|.+|+|.++++..|||||.
T Consensus 64 ~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~ 143 (267)
T KOG1017|consen 64 YGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSIC 143 (267)
T ss_pred hhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEE
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEEC
Q psy4429 104 RSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMY 183 (186)
Q Consensus 104 RAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllD 183 (186)
|||++|++|+|+||..+++||| +|++|++|++++.||+|+|+||..|+||||.
T Consensus 144 RSGEAMEqgLRdCCRsIRIGKI---------------------------Li~sd~~t~~akV~YArfppDI~sR~VLLmY 196 (267)
T KOG1017|consen 144 RSGEAMEQGLRDCCRSIRIGKI---------------------------LIGSDQNTHEAKVLYARFPPDITSRRVLLMY 196 (267)
T ss_pred echHHHHHHHHHHHHHheeeeE---------------------------EeccccccceeeEEEEecCCcccceeEEEEe
Confidence 9999999999999999999999 8889999999999999999999999999999
Q ss_pred CCC
Q psy4429 184 PIM 186 (186)
Q Consensus 184 PmL 186 (186)
|+|
T Consensus 197 Pi~ 199 (267)
T KOG1017|consen 197 PII 199 (267)
T ss_pred eee
Confidence 986
No 5
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=1e-36 Score=254.45 Aligned_cols=131 Identities=25% Similarity=0.450 Sum_probs=124.4
Q ss_pred CeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeee-ccceeeeeccc
Q psy4429 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRS 105 (186)
Q Consensus 27 nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~-~~ic~VsILRA 105 (186)
|+|++ +|||+++++|+|||++|++.+||+|++||+++|+|||+++||+++.+|+||+|.+ .|..+. +++|+||||||
T Consensus 1 ~v~~~-~~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~-~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVI-EHPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGET-EGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEec-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcE-EEeEecCCcEEEEEEeCC
Confidence 67888 5999999999999999999999999999999999999999999999999999986 555554 67999999999
Q ss_pred chhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEECCC
Q psy4429 106 GEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPI 185 (186)
Q Consensus 106 G~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllDPm 185 (186)
|.+|.+++++++|++++|+| +++||++|.+|..||.++|++++++.|+|+|||
T Consensus 79 g~~~~~~l~~~l~~~~v~~i---------------------------~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~ 131 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHV---------------------------GAYRNEETLKPVPYYSKLPEDIDERTVIVLDPM 131 (207)
T ss_pred cHHHHHHHHHhCCcCceeEE---------------------------EEEeCCCCCCCEEEEecCCCCCCCCEEEEECCC
Confidence 99999999999999999999 999999999999999999999999999999999
Q ss_pred C
Q psy4429 186 M 186 (186)
Q Consensus 186 L 186 (186)
+
T Consensus 132 l 132 (207)
T TIGR01091 132 L 132 (207)
T ss_pred c
Confidence 6
No 6
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=247.49 Aligned_cols=131 Identities=31% Similarity=0.514 Sum_probs=126.0
Q ss_pred CeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeee-ccceeeeeccc
Q psy4429 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRS 105 (186)
Q Consensus 27 nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~-~~ic~VsILRA 105 (186)
|+|++ +||++++++|+|||++|++.+||+|++||+++|+|||+++||+++.+|+||+| .+.|..+. +++|+|+|+||
T Consensus 3 ~v~~~-~~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilrg 80 (209)
T PRK00129 3 KVHVV-DHPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRA 80 (209)
T ss_pred ceEec-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCC
Confidence 78888 59999999999999999999999999999999999999999999999999999 57999986 67999999999
Q ss_pred chhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEECCC
Q psy4429 106 GEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPI 185 (186)
Q Consensus 106 G~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllDPm 185 (186)
|.+|.+++++++|.+++|+| +++|+++|.+|..||.++|.++++++|||+|||
T Consensus 81 G~~~~~~l~~~l~~~~~~~i---------------------------~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~ 133 (209)
T PRK00129 81 GLGMVDGVLKLIPSARVGHI---------------------------GLYRDEETLEPVEYYVKLPEDIDERTVIVVDPM 133 (209)
T ss_pred CHHHHHHHHHhCCcCeeeeE---------------------------EEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCc
Confidence 99999999999999999999 999999899999999999999999999999999
Q ss_pred C
Q psy4429 186 M 186 (186)
Q Consensus 186 L 186 (186)
+
T Consensus 134 l 134 (209)
T PRK00129 134 L 134 (209)
T ss_pred c
Confidence 6
No 7
>KOG4203|consensus
Probab=99.91 E-value=8.5e-25 Score=203.22 Aligned_cols=136 Identities=45% Similarity=0.844 Sum_probs=132.1
Q ss_pred cCCCCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeee
Q psy4429 23 EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSV 102 (186)
Q Consensus 23 ~~~~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsI 102 (186)
.++.|+..+++++++++++|.+||..|++.+|.+|+++++|+++++++.++|+.+..|.||.|.+|.|..+..++|+|+|
T Consensus 261 ~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~i~gv~i 340 (473)
T KOG4203|consen 261 RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQICGVSI 340 (473)
T ss_pred cccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccchhccCCC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEE
Q psy4429 103 IRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLM 182 (186)
Q Consensus 103 LRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~Vlll 182 (186)
+|||+.|+++++++|+++++|+| ++|||++|++|.+||.|+|+++++. |+++
T Consensus 341 ~r~g~~~~~alr~~~~~vri~~i---------------------------l~qr~~~t~~~~l~~~~lP~~is~~-V~ll 392 (473)
T KOG4203|consen 341 PRSGESMETALRAACKGVRIGKI---------------------------LIQRDEETGEPELHYEKLPKDISDR-VLLL 392 (473)
T ss_pred CcchhHHHHHHHHHcCCceeeee---------------------------EeechhhccchhhhhhhCccccccc-eeee
Confidence 99999999999999999999999 9999999999999999999999999 9999
Q ss_pred CCCC
Q psy4429 183 YPIM 186 (186)
Q Consensus 183 DPmL 186 (186)
||++
T Consensus 393 ~p~~ 396 (473)
T KOG4203|consen 393 DPVL 396 (473)
T ss_pred cchh
Confidence 9985
No 8
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=97.75 E-value=5.6e-05 Score=61.45 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=51.7
Q ss_pred ccceeeeecccchhHHHHHHhhcc-CceeEEEeeecCccchhhhcccccccccccccceeee--cCC-CcchhhhhhhcC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCR-SIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIE--SDA-DTHEARIVYARF 170 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p-~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~--rd~-~T~~p~lyY~kl 170 (186)
+++++|+|+|+|..|...+.+.++ .+.++++ .+. ++. .+.....++.++
T Consensus 26 ~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i---------------------------~~~~Y~~~~~~~~~~~~~~~~ 78 (166)
T TIGR01203 26 KPLVLLCVLKGSFPFFADLIRYIAVPVQVDFM---------------------------AVSSYGNGMQSSGDVKILKDL 78 (166)
T ss_pred CCeEEEEEccCCHHHHHHHHHhcCCCceeeEE---------------------------EEeeccCCCcccCceEEecCC
Confidence 358899999999999999999998 5789999 544 422 333334456788
Q ss_pred CCCCCCCeEEEECCCC
Q psy4429 171 PEDIAQRKVLLMYPIM 186 (186)
Q Consensus 171 P~~i~~~~VlllDPmL 186 (186)
|.++++++|+|+|+|+
T Consensus 79 ~~~~~gk~vlivDDii 94 (166)
T TIGR01203 79 DLSIKGKDVLIVEDIV 94 (166)
T ss_pred CCCCCCCEEEEEeeee
Confidence 9899999999999985
No 9
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=97.33 E-value=0.00043 Score=61.57 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=53.1
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDI 174 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i 174 (186)
+++++|++.++|..+.+++.+.+++++++.+ ..+|+..+... +.++|.++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l---------------------------~k~R~~~~~~~---~~~~~~~v 200 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIV---------------------------DKRRQGHNVAE---VMNLIGDV 200 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEE---------------------------EEecCCcceee---eEecCCCC
Confidence 5689999999999999999999999999999 77887654322 23788899
Q ss_pred CCCeEEEECCCC
Q psy4429 175 AQRKVLLMYPIM 186 (186)
Q Consensus 175 ~~~~VlllDPmL 186 (186)
++++|+|+|+|+
T Consensus 201 ~g~~viivDDii 212 (302)
T PLN02369 201 KGKVAIMVDDMI 212 (302)
T ss_pred CCCEEEEEcCcc
Confidence 999999999986
No 10
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=97.13 E-value=0.00079 Score=54.87 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=50.6
Q ss_pred ccceeeeecccchhHHHHHHhhccC-----ceeEEEeeecCccchhhhcccccccccccccceeeecCCC---cchhhhh
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRS-----IRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDAD---THEARIV 166 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~-----a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~---T~~p~ly 166 (186)
+++++|+|+|+|..+...+.+.++. ++++++ +...+|+.. ...+...
T Consensus 31 ~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l-------------------------~~~~y~~~~~~~~~~~~~~ 85 (176)
T PRK05205 31 DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGEL-------------------------DITLYRDDLTKKGLHPQVK 85 (176)
T ss_pred CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceE-------------------------EEEEeecCccccCcccccc
Confidence 3679999999999999999999974 337776 003345432 2345566
Q ss_pred hhcCCCCCCCCeEEEECCCC
Q psy4429 167 YARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 167 Y~klP~~i~~~~VlllDPmL 186 (186)
+.++|.++++++|+|+|+|+
T Consensus 86 ~~~l~~~v~gr~VLIVDDIi 105 (176)
T PRK05205 86 PTDIPFDIEGKRVILVDDVL 105 (176)
T ss_pred cccCCCCCCCCEEEEEeccc
Confidence 77889899999999999985
No 11
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.70 E-value=0.022 Score=50.78 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDI 174 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i 174 (186)
+++++|+...+|..+...+.+.+++++++++ ...|+..+..... +.+++.++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i---------------------------~k~R~~~~~~~~~-~~~~~~dv 199 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFI---------------------------HKTRDPTVPNQVV-ANRVVGDV 199 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEE---------------------------EEEcccCCCCceE-EEecCcCC
Confidence 5679999999999999999999988899999 7777755433333 67889999
Q ss_pred CCCeEEEECCCC
Q psy4429 175 AQRKVLLMYPIM 186 (186)
Q Consensus 175 ~~~~VlllDPmL 186 (186)
++++|+|+|+|+
T Consensus 200 ~gr~viIVDDIi 211 (304)
T PRK03092 200 EGRTCVLVDDMI 211 (304)
T ss_pred CCCEEEEEcccc
Confidence 999999999985
No 12
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=91.79 E-value=0.43 Score=40.83 Aligned_cols=95 Identities=12% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeecccchhHHHHHHhhcc----CceeEE
Q psy4429 49 TSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCR----SIRIGK 124 (186)
Q Consensus 49 T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsILRAG~~m~~gl~~~~p----~a~iG~ 124 (186)
-+..++...++||+.-+.+.--... +.+ .+++++|.|+|+|..|..-|.+.+. .+.+++
T Consensus 28 is~e~I~~~i~~LA~~I~~~~~~~~---------~~~--------~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdf 90 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDYRSFK---------LTT--------ENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEF 90 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhcc---------ccC--------CCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEE
Confidence 4566778888888888865421111 111 2467899999999999988877763 356788
Q ss_pred EeeecCccchhhhcccccccccccccceeeecCC--CcchhhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 125 ILIESDADTHEARIGLRDCCRSIRIGKILIESDA--DTHEARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 125 Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~--~T~~p~lyY~klP~~i~~~~VlllDPmL 186 (186)
| ++ .-|++. .+.++.+ ...++.++++++|||+|=++
T Consensus 91 i-----------------~v--------ssY~~~~~s~g~~~i-~~~~~~~i~gk~VLIVDDIv 128 (211)
T PTZ00271 91 I-----------------CA--------SSYGTGVETSGQVRM-LLDVRDSVENRHILIVEDIV 128 (211)
T ss_pred E-----------------EE--------EecCCCCcccCceEE-ecCCCCCCCCCEEEEEeccc
Confidence 8 11 223321 2233443 34567789999999999653
No 13
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=90.04 E-value=0.68 Score=38.32 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred CcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeecccchhHHHHHHhhccC-ceeEEEeee
Q psy4429 50 SRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRS-IRIGKILIE 128 (186)
Q Consensus 50 ~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsILRAG~~m~~gl~~~~p~-a~iG~Il~~ 128 (186)
+..++...++||+.-+.+.--. ..+++++|.|+|+|..+..-+.+.+.- ..++++
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~~~---------------------~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l--- 65 (178)
T PRK15423 10 PEAEIKARIAELGRQITERYKD---------------------SGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFM--- 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc---------------------cCCCeEEEEEecCChHHHHHHHHHhCCCcceeEE---
Confidence 4557777888888777653210 023588999999999999999999864 567777
Q ss_pred cCccchhhhcccccccccccccceeeecCC--C--cchhhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 129 SDADTHEARIGLRDCCRSIRIGKILIESDA--D--THEARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~--~--T~~p~lyY~klP~~i~~~~VlllDPmL 186 (186)
-+.|.. . +.+... ...+|.++++++|||+|=++
T Consensus 66 ------------------------~~ssY~~~~~~~~~v~i-~~~~~~~v~gk~VLlVDDIi 102 (178)
T PRK15423 66 ------------------------TASSYGSGMSTTRDVKI-LKDLDEDIRGKDVLIVEDII 102 (178)
T ss_pred ------------------------EEEEecCCCcccCceEE-ecCCCCCCCCCEEEEEeeec
Confidence 333321 1 122223 34567789999999999553
No 14
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=88.08 E-value=0.76 Score=40.16 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=56.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeecccchhHHHHHHhhccC---------
Q psy4429 49 TSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRS--------- 119 (186)
Q Consensus 49 T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsILRAG~~m~~gl~~~~p~--------- 119 (186)
-+..+....++||++-+.+.- . .+++++|.||++|..|..-|.+.+..
T Consensus 58 is~~~I~~rI~~LA~~I~~dy-------------------~----~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~ 114 (241)
T PTZ00149 58 LPNGLIKDRVEKLAYDIKQVY-------------------G----NEELHILCILKGSRGFFSALVDYLNRIHNYSSTES 114 (241)
T ss_pred eCHHHHHHHHHHHHHHHHHHc-------------------C----CCCeEEEEECCCCHHHHHHHHHHHhhhhhcccccc
Confidence 456677777888777775421 0 24678999999999988887777652
Q ss_pred -cee---EEEeeecCccchhhhcccccccccccccceeeecCC-CcchhhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 120 -IRI---GKILIESDADTHEARIGLRDCCRSIRIGKILIESDA-DTHEARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 120 -a~i---G~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~-~T~~p~lyY~klP~~i~~~~VlllDPmL 186 (186)
.++ ++|-+ --|++. .+++....-... .++++++|||+|.++
T Consensus 115 ~~~~~~~dfi~v-------------------------sSY~~~~s~g~v~i~~~~~-~~l~gk~VLIVDDIi 160 (241)
T PTZ00149 115 PKPPYQEHYVRV-------------------------KSYCNDESTGKLEIVSDDL-SCLKDKHVLIVEDII 160 (241)
T ss_pred CcccccccEEEE-------------------------EEccCCCcCCceEEecccc-cccCCCEEEEEEeEe
Confidence 223 66611 223332 234444432222 368899999999874
No 15
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=87.62 E-value=1.4 Score=36.63 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=42.9
Q ss_pred cceeeeecccchhHHHHHHhhccC----ceeEEEeeecCccchhhhcccccccccccccceeeecCC----Ccchhhhhh
Q psy4429 96 GNCGVSVIRSGEAMEQGLRDCCRS----IRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDA----DTHEARIVY 167 (186)
Q Consensus 96 ~ic~VsILRAG~~m~~gl~~~~p~----a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~----~T~~p~lyY 167 (186)
+.++|.|+|+|..+...+.+.+.- ..+.++ -..|.. .+.+++...
T Consensus 36 ~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi---------------------------~~~sy~~~~~~~g~~~i~~ 88 (189)
T PLN02238 36 SPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFI---------------------------RASSYGGGTESSGVAKVSG 88 (189)
T ss_pred CcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEE---------------------------EeeecCCCccccCceeEec
Confidence 378899999999999988888763 555566 222221 123444444
Q ss_pred hcCCCCCCCCeEEEECCC
Q psy4429 168 ARFPEDIAQRKVLLMYPI 185 (186)
Q Consensus 168 ~klP~~i~~~~VlllDPm 185 (186)
..++.++++++|+|+|=+
T Consensus 89 ~~~~~~v~gk~VliVDDI 106 (189)
T PLN02238 89 ADLKIDVKGKHVLLVEDI 106 (189)
T ss_pred CCCCCCCCCCEEEEEecc
Confidence 456667899999999854
No 16
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.46 E-value=1.4 Score=40.05 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=48.6
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDI 174 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i 174 (186)
+++++|++-.+|..+...+.+.+++++.+.+ .-+|+..+.. -..+++.++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~---------------------------~k~R~~~~~~---~~~~~~~~v 228 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAII---------------------------DKRRQAHNVA---EVLNVIGDV 228 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEE---------------------------EeeccCCcee---eeEeccccC
Confidence 5689999999999999999999988888888 5555543321 123456678
Q ss_pred CCCeEEEECCCC
Q psy4429 175 AQRKVLLMYPIM 186 (186)
Q Consensus 175 ~~~~VlllDPmL 186 (186)
+++.|+|+|-|+
T Consensus 229 ~g~~viiVDDii 240 (330)
T PRK02812 229 KGKTAILVDDMI 240 (330)
T ss_pred CCCEEEEEcccc
Confidence 999999999875
No 17
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=85.06 E-value=0.52 Score=34.80 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred eeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCe
Q psy4429 99 GVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRK 178 (186)
Q Consensus 99 ~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~ 178 (186)
+|+|.|+|.++...+.+.+.-...... ....-.. ..............+...+..+++++
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~gk~ 90 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIPLVFVR-KRKSYYP-------------------GSDKTSREKNNQELFIIDKEDIKGKR 90 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHEEEEEE-EEEEEES-------------------EEEEEEEETEEEEEEEEESSSGTTSE
T ss_pred EEeehhccHHHHHHHHHHhCCCcccee-eeecccc-------------------cchhhhhccCceEEeeccccccccee
Confidence 789999999999999988875333332 0000000 00111111233344556677889999
Q ss_pred EEEECCC
Q psy4429 179 VLLMYPI 185 (186)
Q Consensus 179 VlllDPm 185 (186)
|+|+|-+
T Consensus 91 vliVDDv 97 (125)
T PF00156_consen 91 VLIVDDV 97 (125)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9999965
No 18
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=84.16 E-value=6.3 Score=32.30 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeecccchhHHHHHHhhccC-ceeEEE
Q psy4429 49 TSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRS-IRIGKI 125 (186)
Q Consensus 49 T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsILRAG~~m~~gl~~~~p~-a~iG~I 125 (186)
-+..+|...+++|+..+.+. +. . +..++|+|.++|..+...+.+.+-- ...+.+
T Consensus 17 ~s~~~i~~~i~~la~~i~~~----~~-----------~--------~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l 71 (181)
T PRK09162 17 VSAAEVEAAIDRMADEITAD----LA-----------D--------ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYL 71 (181)
T ss_pred ecHHHHHHHHHHHHHHHHHH----cC-----------C--------CCeEEEEECCCcHHHHHHHHHHcCCCcccCEE
Confidence 45567777777777777653 11 0 1357899999999999999998752 234444
No 19
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=83.19 E-value=2.5 Score=37.52 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDI 174 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i 174 (186)
+++++|++..+|..+...+.+.+. ++++++ --.|+..+. .....+++.++
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i---------------------------~k~r~~~~~--~~~~~~~~~~v 208 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAII---------------------------DKRRISATN--EVEVMNLVGDV 208 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEE---------------------------EEEecCCCC--EEEEEeccccc
Confidence 467899999999999999998875 777777 334442111 13345667889
Q ss_pred CCCeEEEECCCC
Q psy4429 175 AQRKVLLMYPIM 186 (186)
Q Consensus 175 ~~~~VlllDPmL 186 (186)
+++.|+|+|+|+
T Consensus 209 ~g~~vliVDDii 220 (308)
T TIGR01251 209 EGKDVVIVDDII 220 (308)
T ss_pred CCCEEEEEcccc
Confidence 999999999985
No 20
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=75.25 E-value=5.6 Score=36.98 Aligned_cols=24 Identities=13% Similarity=0.276 Sum_probs=20.2
Q ss_pred hhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 163 ARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 163 p~lyY~klP~~i~~~~VlllDPmL 186 (186)
+..+|..+|.+++++.|+|+|+|+
T Consensus 251 ~~~~~~~~g~dV~gr~vIIVDDII 274 (382)
T PRK06827 251 PIVAHEFLGRDVEGKDVLIVDDMI 274 (382)
T ss_pred ceEEEecCCcccCCCEEEEEeCCc
Confidence 456777788789999999999985
No 21
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=72.09 E-value=8 Score=31.17 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=19.5
Q ss_pred cceeeeecccchhHHHHHHhhcc
Q psy4429 96 GNCGVSVIRSGEAMEQGLRDCCR 118 (186)
Q Consensus 96 ~ic~VsILRAG~~m~~gl~~~~p 118 (186)
..++|.|+|+|..+...+.+.+.
T Consensus 32 ~d~vvgv~~GG~~fa~~L~~~L~ 54 (156)
T PRK09177 32 WKGIIAVTRGGLVPAAILARELG 54 (156)
T ss_pred CCEEEEEecCCeehHHHHHHHcC
Confidence 35789999999999999888874
No 22
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=67.41 E-value=9.6 Score=32.35 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=26.3
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEE
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~I 125 (186)
++=++|.|.|+|.-.-.-+.+.+--.++..|
T Consensus 29 ~PDvIiaiaRGG~~pariLsd~L~~~~l~~i 59 (192)
T COG2236 29 KPDVIVAIARGGLIPARILSDFLGVKPLYSI 59 (192)
T ss_pred CCCEEEEEcCCceehHHHHHHHhCCCceEEE
Confidence 3457899999999999999999887788877
No 23
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=67.32 E-value=11 Score=31.95 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeeecccchhHHHHHHhhccC-----ceeEE
Q psy4429 50 SRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRS-----IRIGK 124 (186)
Q Consensus 50 ~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsILRAG~~m~~gl~~~~p~-----a~iG~ 124 (186)
+..+|++...||+.-++|.-- | -.++++|-|=+.|..+.+-+.+-+-. +++|.
T Consensus 8 d~~~i~RtitRia~eIiErnk-------------------~---~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~ 65 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERNK-------------------G---LDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGE 65 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-------------------C---CCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeee
Confidence 456788888888887777411 1 12678888889999999988876653 55777
Q ss_pred EeeecCccchhhhcccccccccccccceeeecCCCc----chhhhhhhcCCCCCCCCeEEEECCCC
Q psy4429 125 ILIESDADTHEARIGLRDCCRSIRIGKILIESDADT----HEARIVYARFPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 125 Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T----~~p~lyY~klP~~i~~~~VlllDPmL 186 (186)
+ ++-+|||.-+ .+|..--.-+|.+|.++.|+|+|-.|
T Consensus 66 l-------------------------DIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VILVDDVL 106 (179)
T COG2065 66 L-------------------------DITLYRDDLTQKGPLRPQAKTTILPFDITGKRVILVDDVL 106 (179)
T ss_pred E-------------------------EeEEeechhhhcCccCCcccCccCcccccCCEEEEEeeec
Confidence 7 4488888543 35666667888899999999999653
No 24
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.58 E-value=16 Score=32.64 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=24.7
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEE
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~I 125 (186)
+++++|++-++|..+...+.+.+. ++...+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~ 187 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLD-ADLAII 187 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhC-CCEEEE
Confidence 567999999999999999999884 555544
No 25
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=48.67 E-value=46 Score=28.29 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=43.5
Q ss_pred ccceeeeecccchhHHHHHHhhcc-CceeEEEeeecCccchhhhcccccccccccccceeeecC--CCc--chhhhhhhc
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCR-SIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESD--ADT--HEARIVYAR 169 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p-~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd--~~T--~~p~lyY~k 169 (186)
+.+.+|.||+++..|..-|.+.+. ...+-++ .+.|- ..+ +.++. -.-
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm---------------------------~vSSYg~~t~ssg~v~i-~kD 86 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFM---------------------------HVSSYGGGTSSSGEVKI-LKD 86 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEE---------------------------EEeccCCCcccCCceEE-ecc
Confidence 678899999999999988877776 5667777 33332 221 22222 223
Q ss_pred CCCCCCCCeEEEECCCC
Q psy4429 170 FPEDIAQRKVLLMYPIM 186 (186)
Q Consensus 170 lP~~i~~~~VlllDPmL 186 (186)
|-.++.+|.|||+|=++
T Consensus 87 ld~di~grdVLiVeDIi 103 (178)
T COG0634 87 LDEDIKGRDVLIVEDII 103 (178)
T ss_pred cccCCCCCeEEEEeccc
Confidence 45678899999998653
No 26
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=39.10 E-value=46 Score=29.26 Aligned_cols=29 Identities=0% Similarity=-0.081 Sum_probs=21.2
Q ss_pred cceeeeecccchhHHHHHHhhccCceeEEE
Q psy4429 96 GNCGVSVIRSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 96 ~ic~VsILRAG~~m~~gl~~~~p~a~iG~I 125 (186)
+.++|++.++|..+...+.+.+. ++...+
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i 183 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILG-CEYDYL 183 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhC-CCEEEE
Confidence 45788888888888888888774 454444
No 27
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=31.91 E-value=65 Score=28.92 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.2
Q ss_pred ccchhHHHHHHhhccCceeEEE
Q psy4429 104 RSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 104 RAG~~m~~gl~~~~p~a~iG~I 125 (186)
+|-.-+.++|++.+|++++..-
T Consensus 49 ~a~~iI~~~L~a~~P~ipvv~E 70 (276)
T COG1218 49 AAQQIILEGLRALFPDIPVVSE 70 (276)
T ss_pred HHHHHHHHHHHHhCCCCCEEEe
Confidence 4555678999999999998877
No 28
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=31.67 E-value=99 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=20.3
Q ss_pred eeeeecccchhHHHHHHhhccCceeEEE
Q psy4429 98 CGVSVIRSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 98 c~VsILRAG~~m~~gl~~~~p~a~iG~I 125 (186)
++|+|-++|.++...+...+. .+...+
T Consensus 88 ~Ivgi~~gG~~~A~~lA~~L~-~~~~~~ 114 (200)
T PRK02277 88 VVVGIAKSGVPLATLVADELG-KDLAIY 114 (200)
T ss_pred EEEeeccCCHHHHHHHHHHhC-CCcEEE
Confidence 567888999999999988774 444333
No 29
>PF12852 Cupin_6: Cupin
Probab=31.53 E-value=1.3e+02 Score=23.89 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=40.2
Q ss_pred CCCeEEe----CCchHHHHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHHhcC
Q psy4429 25 IPNLKIL----PSNDQVRELQTILRDKN-TSRSDFKFFADRLIRLVIEESLNQ 72 (186)
Q Consensus 25 ~~nl~vl----~~~p~l~~~lTiLRD~~-T~~~~Fr~~~~rL~rLL~eeAl~~ 72 (186)
.|.+.++ ...+.+..++..|+++. .++.-..-.++||+.+|.-++++.
T Consensus 131 LP~~i~i~~~~~~~~~L~~~l~~l~~E~~~~~~G~~~v~~rL~e~Llv~~LR~ 183 (186)
T PF12852_consen 131 LPPVIHIRADDAAAPWLAALLALLRSESAQPRPGSDAVLDRLAELLLVEALRH 183 (186)
T ss_pred CCCeEEEecCCCCchhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3566666 46899999999999885 577889999999999999999875
No 30
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=29.56 E-value=70 Score=23.16 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q psy4429 34 NDQVRELQTILRDKNTSRSDFKFFADRLIRL 64 (186)
Q Consensus 34 ~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rL 64 (186)
+.++++++..+|+-+-+..+|+..++=|.+.
T Consensus 9 ~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~ 39 (74)
T PF04444_consen 9 ARLVRHLHDFIREVDLTEDEWWAAVDFLNRV 39 (74)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999988776654
No 31
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=28.69 E-value=96 Score=24.83 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=18.4
Q ss_pred eeeeecccchhHHHHHHhhccCcee
Q psy4429 98 CGVSVIRSGEAMEQGLRDCCRSIRI 122 (186)
Q Consensus 98 c~VsILRAG~~m~~gl~~~~p~a~i 122 (186)
++|++-++|..+...+.+.+. ++.
T Consensus 49 ~ivgi~~~G~~~A~~la~~L~-~~~ 72 (169)
T TIGR01090 49 YIVGPEARGFIFGAALAYKLG-VGF 72 (169)
T ss_pred EEEeehhccHHHHHHHHHHHC-CCE
Confidence 667888999999888888764 443
No 32
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.17 E-value=2.1e+02 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=23.3
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEE
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKI 125 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~I 125 (186)
.++++|++..+|..+...+.+.+. +++..+
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~ 198 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAII 198 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEE
Confidence 467889999999999999988874 455444
No 33
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=23.25 E-value=1.2e+02 Score=24.32 Aligned_cols=25 Identities=16% Similarity=0.011 Sum_probs=19.7
Q ss_pred ceeeeecccchhHHHHHHhhccCcee
Q psy4429 97 NCGVSVIRSGEAMEQGLRDCCRSIRI 122 (186)
Q Consensus 97 ic~VsILRAG~~m~~gl~~~~p~a~i 122 (186)
-++|++.++|.++...+.+.+. ++.
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~-~p~ 77 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLG-IGF 77 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhC-CCE
Confidence 4567889999999999988874 444
No 34
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.55 E-value=2e+02 Score=25.92 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=40.4
Q ss_pred ccceeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCC
Q psy4429 95 RGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDI 174 (186)
Q Consensus 95 ~~ic~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i 174 (186)
+++++|+.--+|......+.+.+..++...+ -=+|+..+..- -.++..++
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~---------------------------~K~R~~~~~~~---~~~~~gdv 215 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAII---------------------------DKRRPRANVAT---VMNIIGDV 215 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEe---------------------------ccccCCCCceE---EEecccCC
Confidence 4677888888888888888888765555555 22333222110 11234578
Q ss_pred CCCeEEEECCCC
Q psy4429 175 AQRKVLLMYPIM 186 (186)
Q Consensus 175 ~~~~VlllDPmL 186 (186)
++++|+|+|=|+
T Consensus 216 ~Gr~viIVDDIi 227 (319)
T PRK04923 216 QGKTCVLVDDLV 227 (319)
T ss_pred CCCEEEEEeccc
Confidence 999999999764
Done!