RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4429
(186 letters)
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 127 bits (320), Expect = 5e-37
Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 27/164 (16%)
Query: 23 EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVT 82
PN+ ++ Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LPF K ++ T
Sbjct: 30 TRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTT 89
Query: 83 PTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRD 142
P +YHG+ + CGVS++R+GE+ME GLR
Sbjct: 90 PLDVSYHGVSFYSKICGVSIVRAGESMES---------------------------GLRA 122
Query: 143 CCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
CR +RIGKILI+ D T E +++Y + P DI +R V+L+ P+
Sbjct: 123 VCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMC 166
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 113 bits (283), Expect = 1e-31
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 30/168 (17%)
Query: 19 VSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKM 78
+ PNL IL ++ T +RDK+TS F+ + L+ E LP +
Sbjct: 2 MKQDSRFPNLFILDHP-LIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTK 60
Query: 79 DIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARI 138
+ TP + + V V+R+G M GL + S R+G I + D
Sbjct: 61 RVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRP--- 117
Query: 139 GLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
+ Y D+ R +L P++
Sbjct: 118 --------------------------VEYLVRLPDLEDRIFILCDPMV 139
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 109 bits (275), Expect = 1e-30
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 28/160 (17%)
Query: 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGA 86
+ + ++ T +RDKNT +F+ D + L+ E LP +++I TP
Sbjct: 3 KVYVFDHP-LIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSK 61
Query: 87 TYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRS 146
+ + + ++R+G M G+ +
Sbjct: 62 ARAKVIAGKKLGVIPILRAGIGMVD---------------------------GILKLIPA 94
Query: 147 IRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
++G I + D T + Y + P D+ +R +++ P++
Sbjct: 95 AKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPML 134
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 110 bits (276), Expect = 1e-30
Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 28/164 (17%)
Query: 23 EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVT 82
+ NL ++ ++ TI+RDKNT +F+ + L+ E+ L ++++ T
Sbjct: 11 HHMKNLVVVDHP-LIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVET 69
Query: 83 PTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRD 142
P T ++ V ++R+G M G+ +
Sbjct: 70 PITKTIGYRINDKDIVVVPILRAGLVMAD---------------------------GILE 102
Query: 143 CCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
+ +G I I D +T +A YA+ P ++V L+ P++
Sbjct: 103 LLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPML 146
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 109 bits (273), Expect = 2e-30
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 30 ILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYH 89
L + V+ LRDK T DF+ A+ + L+ E++ L + + TP
Sbjct: 4 TLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARV 63
Query: 90 GLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRI 149
+ + V+++R+G M + G+ R+
Sbjct: 64 KVLSGKKLALVAILRAGLVMVE---------------------------GILKLVPHARV 96
Query: 150 GKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
G I + D ++ Y + P DIA+R+ L+ P++
Sbjct: 97 GHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPML 133
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 108 bits (270), Expect = 7e-30
Identities = 22/157 (14%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 30 ILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYH 89
+ S+ ++ R ++TS + L +++ E+L + + ++ T G
Sbjct: 3 VELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRF 62
Query: 90 GLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRI 149
E V ++R+G + +G + ++G + I+ + +T E+ I
Sbjct: 63 NYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHI----------- 111
Query: 150 GKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
Y ++ + V+++ P++
Sbjct: 112 -----------------YYSRLPELKGKIVVILDPML 131
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 100 bits (250), Expect = 6e-27
Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 27/157 (17%)
Query: 30 ILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYH 89
+ + V+ ++R+++ S F+ A + L+ E+ L K+ I G
Sbjct: 4 VEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEI 63
Query: 90 GLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRI 149
+ V ++R+G M G+ + S RI
Sbjct: 64 DQIKGKKITVVPILRAGLGMMD---------------------------GVLENVPSARI 96
Query: 150 GKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
+ + + +T E + + +I +R L++ P++
Sbjct: 97 SVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPML 133
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 92.8 bits (230), Expect = 6e-24
Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 30 ILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYH 89
+ + T LRDK T + +F+ RL R++ E N L + +++ TP G
Sbjct: 4 YVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTK 63
Query: 90 GLKYERGN--CGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSI 147
G+ N ++++R+ + +GL R G I
Sbjct: 64 GVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDG------------- 110
Query: 148 RIGKILIESDADTHEARIVYARFPEDIA-QRKVLLMYPIM 186
+ + I Y + P+ A V++ P++
Sbjct: 111 -------KEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMI 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 5e-05
Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 81/232 (34%)
Query: 22 TEDIPNLKILPSND-QVRELQTILRDKNTS----------RSDFKFFADRL--------- 61
E+I ++ + L L K R ++KF +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 62 IRLVIEESLNQL-----PFSKMDIVTP----------------TGATYHGLKYERGNCG- 99
+ + E ++L F+K ++ G+ G G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---G-SGK 163
Query: 100 ----VSVIRSGE---AMEQG-----LRDCCRSIRIGKIL------IESDA---------- 131
+ V S + M+ L++C + ++L I+ +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 132 --DTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLL 181
H + LR +S L+ + A+ A F ++ K+LL
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNA-F--NL-SCKILL 270
Score = 35.6 bits (81), Expect = 0.007
Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 58/178 (32%)
Query: 16 SKYVSF-TEDIPN--LKILPSNDQVRELQTI---LRDKNTSRSDF--KFFADRLIRLVIE 67
KY+ +D+P L P R L I +RD + D D+L +IE
Sbjct: 308 LKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRD-GLATWDNWKHVNCDKLTT-IIE 360
Query: 68 ESLNQLP-------------FSKMDIVTPTGATYHGLKYERGNCGVSVI---RSGEAMEQ 111
SLN L F PT +S+I +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPP-SAHIPTIL-------------LSLIWFDVIKSDVMV 406
Query: 112 GLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIV--Y 167
+ + L+E E+ I + + K+ +E++ H IV Y
Sbjct: 407 VVNKLHK-----YSLVEKQPK--ESTISIPSIYLEL---KVKLENEYALH-RSIVDHY 453
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 30.4 bits (68), Expect = 0.32
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 102 VIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADT 160
+R G + + I LI ++A IG++D +I I + D
Sbjct: 50 TLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDG----KIAGIGKGGNKDM 104
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 28.5 bits (63), Expect = 1.3
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 102 VIRSGEAMEQGLR--DCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKI 152
V+R G + + + LI ++A IG++D G I
Sbjct: 49 VLREGMGENGTYTRTENVLDLLLTNALILDYTGIYKADIGVKD-------GYI 94
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC,
Ca2+-dependent, catalytic TIM barrel, disulfide-LINK
loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB:
3h4w_A
Length = 339
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 129 SDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLM 182
DA T+ D +LI +DA I E A +V +
Sbjct: 261 GDAATYLNGSI--DTSWYDTRHYLLIMTDAHNVPPVIDGTHPTEAEALARVRQL 312
>3h9p_A Putative triphosphoribosyl-dephospho-COA synthase; putative
triphosphoribosyl-dephospho synthase, structural
genomics, PSI-2; HET: PG4; 2.30A {Archaeoglobus fulgidus
dsm 4304}
Length = 249
Score = 27.3 bits (60), Expect = 3.0
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 88 YHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIG 139
+ LK+E + S + IG+ ++ + ++
Sbjct: 8 FDDLKFE------HFLASAAGAFPAFLEVAEKRIIGEGVLRAVKESMRWHRA 53
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A
{Neisseria meningitidis} SCOP: f.4.1.1
Length = 155
Score = 26.5 bits (58), Expect = 4.1
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 118 RSIRIGKILIESDADTHEARIGLR 141
R IGK+ + + E G+R
Sbjct: 129 RYNYIGKVNTVKNVRSGELSAGVR 152
>3qzm_A Iron-regulated surface determinant protein A; heme, transport,
uptake, receptor, cell WALL, metal BI protein; HET: HEM;
1.25A {Staphylococcus aureus subsp} PDB: 2ite_A* 2itf_A*
3qzo_A* 3qzp_A* 3qzl_A* 3qzn_A*
Length = 127
Score = 25.7 bits (56), Expect = 6.3
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 14/79 (17%)
Query: 16 SKYVSFT----EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLN 71
Y K +N+Q + +K E
Sbjct: 43 KYYFQTVLNNASFWKEYKFYNANNQELATTVVNDNKKADTRTINVAV---------EPGY 93
Query: 72 QLPFSKMDIVTPTGATYHG 90
+ +K+ IV P Y+
Sbjct: 94 KSLTTKVHIVVP-QINYNH 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.397
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,853,832
Number of extensions: 170331
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 28
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)