RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4429
(186 letters)
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
5811]}
Length = 224
Score = 108 bits (272), Expect = 2e-30
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 27/172 (15%)
Query: 15 KSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLP 74
+S PN+ ++ Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LP
Sbjct: 3 ESILQDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELP 62
Query: 75 FSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTH 134
F K ++ TP +YHG+ + CGVS++R+GE+ME
Sbjct: 63 FQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES----------------------- 99
Query: 135 EARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
GLR CR +RIGKILI+ D T E +++Y + P DI +R V+L+ P+
Sbjct: 100 ----GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMC 147
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 95.8 bits (238), Expect = 1e-25
Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 37 VRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERG 96
++ T +RDKNT +F+ D + L+ E LP +++I TP + +
Sbjct: 11 IQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKK 70
Query: 97 NCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIES 156
+ ++R+G M G+ + ++G I + D T +
Sbjct: 71 LGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVE------------------ 112
Query: 157 DADTHEARIVYARFPEDIAQRKVLLMYPIM 186
Y + P D+ +R +++ P++
Sbjct: 113 ---------YYVKLPSDVEERDFIIVDPML 133
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
[TaxId: 2336]}
Length = 210
Score = 93.9 bits (233), Expect = 6e-25
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 27 NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGA 86
NL ++ + ++ TI+RDKNT +F+ + L+ E+ L ++++ TP
Sbjct: 4 NLVVVD-HPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITK 62
Query: 87 TYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRS 146
T ++ V ++R+G M G+ + + +G I I D +T +A
Sbjct: 63 TIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPL 122
Query: 147 IRIGKILI 154
++ +
Sbjct: 123 NDDKEVFL 130
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 93.1 bits (231), Expect = 2e-24
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 37 VRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERG 96
V+ LRDK T DF+ A+ + L+ E++ L + + TP + +
Sbjct: 11 VQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKK 70
Query: 97 NCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIES 156
V+++R+G M + G+ R+G I +
Sbjct: 71 LALVAILRAGLVMVE---------------------------GILKLVPHARVGHIGLYR 103
Query: 157 DADTHEARIVYARFPEDIAQRKVLLMYPIM 186
D ++ Y + P DIA+R+ L+ P++
Sbjct: 104 DPESLNPVQYYIKLPPDIAERRAFLLDPML 133
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 215
Score = 88.5 bits (219), Expect = 1e-22
Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 36 QVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYER 95
+ T LRDK T + +F+ RL R++ E N L + +++ TP G G+
Sbjct: 9 ITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITD 68
Query: 96 GN--CGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKIL 153
N ++++R+ + +GL R G I +
Sbjct: 69 LNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKE----------------- 111
Query: 154 IESDADTHEARIVYARFPEDIAQ-RKVLLMYPIM 186
+ I Y + P+ A+ V++ P++
Sbjct: 112 ---VPKDMDVYIYYKKIPDIRAKVDNVIIADPMI 142
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 26.9 bits (58), Expect = 1.6
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 109 MEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDAD 159
+ + + +G + S T LRD R + + ++L+E+D+
Sbjct: 157 FTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSP 207
Score = 24.6 bits (52), Expect = 7.2
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 94 ERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDAD 132
+ G + LRD R + + ++L+E+D+
Sbjct: 169 DLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSP 207
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
34413]}
Length = 399
Score = 26.3 bits (58), Expect = 2.5
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 83 PTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCC 117
P GA Y G Y C V+ +G +G CC
Sbjct: 162 PGGAYY-GTGYCDAQCFVTPFINGLGNIEGKGSCC 195
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
meningitidis [TaxId: 487]}
Length = 155
Score = 25.4 bits (55), Expect = 3.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 118 RSIRIGKILIESDADTHEARIGLR 141
R IGK+ + + E G+R
Sbjct: 129 RYNYIGKVNTVKNVRSGELSAGVR 152
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 25.3 bits (54), Expect = 4.5
Identities = 9/70 (12%), Positives = 21/70 (30%)
Query: 89 HGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIR 148
HG+ R G ++ + D ++ I S + L
Sbjct: 174 HGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGL 233
Query: 149 IGKILIESDA 158
+ ++++ D
Sbjct: 234 LNRVMLSMDI 243
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 25.1 bits (54), Expect = 6.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 17 KYVSFTEDIPNLKILPSNDQVRELQ 41
+SF + I + LP DQ+ L+
Sbjct: 112 GIISFAKVISYFRDLPIEDQISLLK 136
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 25.0 bits (54), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 17 KYVSFTEDIPNLKILPSNDQVRELQ 41
K + F + IP + L S DQ+ L+
Sbjct: 72 KVIGFAKMIPGFRDLTSEDQIVLLK 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.397
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,424
Number of extensions: 31206
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 18
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)