BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy443
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 24 ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 83
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 84 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 143
Query: 252 ESMGSQSGKTSKKIVL 267
ES GS+SG+TSKKIV+
Sbjct: 144 ESFGSKSGRTSKKIVI 159
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/144 (79%), Positives = 130/144 (90%), Gaps = 2/144 (1%)
Query: 259 GKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
GK ++VL ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGT
Sbjct: 15 GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGT 74
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
GGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+
Sbjct: 75 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVI 134
Query: 377 EGLDVVKKLESMGSQSGKTSKKIV 400
EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 135 EGMDVVKKIESFGSKSGRTSKKIV 158
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 23 ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 83 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 252 ESMGSQSGKTSKKIVL 267
ES GS+SG+TSKKIV+
Sbjct: 143 ESFGSKSGRTSKKIVI 158
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 114/144 (79%), Positives = 130/144 (90%), Gaps = 2/144 (1%)
Query: 259 GKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
GK ++VL ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGT
Sbjct: 14 GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGT 73
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
GGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+
Sbjct: 74 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVI 133
Query: 377 EGLDVVKKLESMGSQSGKTSKKIV 400
EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 134 EGMDVVKKIESFGSKSGRTSKKIV 157
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 22 ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 82 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 141
Query: 252 ESMGSQSGKTSKKIVL 267
ES GS+SG+TSKKIV+
Sbjct: 142 ESFGSKSGRTSKKIVI 157
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 114/145 (78%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Query: 258 SGKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 315
+GK ++VL ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNG
Sbjct: 12 NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNG 71
Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
TGGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V
Sbjct: 72 TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 131
Query: 376 VEGLDVVKKLESMGSQSGKTSKKIV 400
+EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 132 IEGMDVVKKIESFGSKSGRTSKKIV 156
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 111/136 (81%), Positives = 126/136 (92%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++
Sbjct: 23 ELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+
Sbjct: 83 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 252 ESMGSQSGKTSKKIVL 267
ES GS+SG+TSKKIV+
Sbjct: 143 ESFGSKSGRTSKKIVI 158
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/145 (78%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Query: 258 SGKTSKKIVL--RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 315
+GK ++VL ++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNG
Sbjct: 13 NGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNG 72
Query: 316 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
TGGKSIYG++F DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V
Sbjct: 73 TGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 132
Query: 376 VEGLDVVKKLESMGSQSGKTSKKIV 400
+EG+DVVKK+ES GS+SG+TSKKIV
Sbjct: 133 IEGMDVVKKIESFGSKSGRTSKKIV 157
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 120/137 (87%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
+++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 29 QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 88
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++
Sbjct: 89 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 148
Query: 384 KLESMGSQSGKTSKKIV 400
++E+ GS+ GK +K++
Sbjct: 149 QIEAQGSKDGKPKQKVI 165
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 101/135 (74%), Positives = 118/135 (87%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 32 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 91
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E
Sbjct: 92 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151
Query: 253 SMGSQSGKTSKKIVL 267
+ GS+ GK +K+++
Sbjct: 152 AQGSKDGKPKQKVII 166
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 120/137 (87%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
+++LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG
Sbjct: 21 QMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYG 80
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
KF+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++
Sbjct: 81 KKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLR 140
Query: 384 KLESMGSQSGKTSKKIV 400
++E+ GS+ GK +K++
Sbjct: 141 QIEAQGSKDGKPKQKVI 157
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 101/135 (74%), Positives = 118/135 (87%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 24 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 83
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E
Sbjct: 84 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 143
Query: 253 SMGSQSGKTSKKIVL 267
+ GS+ GK +K+++
Sbjct: 144 AQGSKDGKPKQKVII 158
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 22 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG+V EG+++V+ +
Sbjct: 82 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 23 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG+V EG+++V+ +E
Sbjct: 83 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAME 142
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 42 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 101
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 102 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 161
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 162 ERFGSRNGKTSKKITI 177
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162
Query: 387 SMGSQSGKTSKKIV 400
GS++GKTSKKI
Sbjct: 163 RFGSRNGKTSKKIT 176
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 22 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 82 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 23 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 83 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 142
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 31 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 90
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 91 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 150
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 151 ERFGSRNGKTSKKITI 166
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 32 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 91
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 92 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 151
Query: 387 SMGSQSGKTSKKIV 400
GS++GKTSKKI
Sbjct: 152 RFGSRNGKTSKKIT 165
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGIL+MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/133 (77%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGIL+MANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 114/133 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/133 (78%), Positives = 114/133 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 115/136 (84%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 27 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK 86
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +
Sbjct: 87 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 146
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 147 ERFGSRNGKTSKKITI 162
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/134 (77%), Positives = 114/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 28 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 87
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD HVVFG V EG+++V+ +E
Sbjct: 88 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME 147
Query: 387 SMGSQSGKTSKKIV 400
GS++GKTSKKI
Sbjct: 148 RFGSRNGKTSKKIT 161
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FH++IP FMCQGGDFT HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/133 (77%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FH++IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT+HNGTGGKSIYG K
Sbjct: 22 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 82 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141
Query: 252 ESMGSQSGKTSKKIVL 267
+ GS++GKTSKKI +
Sbjct: 142 KRFGSRNGKTSKKITI 157
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/133 (77%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT+HNGTGGKSIYG KF
Sbjct: 23 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ ++
Sbjct: 83 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMK 142
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKI 155
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 117/136 (86%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+HNGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/133 (77%), Positives = 116/133 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+HNGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 116/135 (85%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP F CQGGDFTNHNGTGGKSIYG KF
Sbjct: 33 LRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKF 92
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF LKHTGPG+LS AN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E
Sbjct: 93 DDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 152
Query: 253 SMGSQSGKTSKKIVL 267
+ GS+ GK +K+++
Sbjct: 153 AQGSKDGKPKQKVII 167
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 116/135 (85%)
Query: 266 VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 325
+LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP F CQGGDFTNHNGTGGKSIYG K
Sbjct: 32 LLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKK 91
Query: 326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
F+DENF LKHTGPG+LS AN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++
Sbjct: 92 FDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 151
Query: 386 ESMGSQSGKTSKKIV 400
E+ GS+ GK +K++
Sbjct: 152 EAQGSKDGKPKQKVI 166
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/136 (75%), Positives = 116/136 (85%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+ NGTGGKSIYG K
Sbjct: 23 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +
Sbjct: 83 FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 143 ERFGSRNGKTSKKITI 158
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/133 (76%), Positives = 115/133 (86%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGG+FT+ NGTGGKSIYG KF
Sbjct: 24 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 84 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 143
Query: 387 SMGSQSGKTSKKI 399
GS++GKTSKKI
Sbjct: 144 RFGSRNGKTSKKI 156
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/136 (75%), Positives = 112/136 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP F CQGGDFT HNGTGGKSIYG K
Sbjct: 22 ELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF LKHTGPGILS ANAGPNTNGSQFFI T KT WLD +HVVFG V EG ++V+
Sbjct: 82 FEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAX 141
Query: 252 ESMGSQSGKTSKKIVL 267
E GS++GKTSKKI +
Sbjct: 142 ERFGSRNGKTSKKITI 157
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/134 (76%), Positives = 111/134 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP F CQGGDFT HNGTGGKSIYG KF
Sbjct: 23 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILS ANAGPNTNGSQFFI T KT WLD +HVVFG V EG ++V+ E
Sbjct: 83 EDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXE 142
Query: 387 SMGSQSGKTSKKIV 400
GS++GKTSKKI
Sbjct: 143 RFGSRNGKTSKKIT 156
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 112/136 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+L +D+VPKTAENFRALCTGEKGFG+ S FHRVIP+FM QGGDFT NGTGGKSIYG K
Sbjct: 21 KLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGK 80
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENF H PG+LSMANAGPNTNGSQFFITTV WLD +HVVFG VV+G D+VKK+
Sbjct: 81 FPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKV 140
Query: 252 ESMGSQSGKTSKKIVL 267
ES+GS SG T +IV+
Sbjct: 141 ESLGSPSGATKARIVV 156
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Query: 251 LESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDF 310
+E+ G G+ K L +D+VPKTAENFRALCTGEKGFG+ S FHRVIP+FM QGGDF
Sbjct: 8 VEADGQPIGRVVFK--LYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDF 65
Query: 311 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
T NGTGGKSIYG KF DENF H PG+LSMANAGPNTNGSQFFITTV WLD +HV
Sbjct: 66 TAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHV 125
Query: 371 VFGSVVEGLDVVKKLESMGSQSGKTSKKIVC 401
VFG VV+G D+VKK+ES+GS SG T +IV
Sbjct: 126 VFGEVVDGYDIVKKVESLGSPSGATKARIVV 156
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/134 (72%), Positives = 111/134 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG K
Sbjct: 22 KLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK 81
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+
Sbjct: 82 FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 141
Query: 252 ESMGSQSGKTSKKI 265
E GS SGKT+ I
Sbjct: 142 EGKGSASGKTNATI 155
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 110/133 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23 LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
Query: 387 SMGSQSGKTSKKI 399
GS SGKT+ I
Sbjct: 143 GKGSASGKTNATI 155
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/148 (72%), Positives = 115/148 (77%), Gaps = 9/148 (6%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGD 309
GK S +IV L DVVPKTA NFRALCTGE G G FK S FHR+IPNFM QGGD
Sbjct: 14 GKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGD 73
Query: 310 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRH 369
FT NGTGG+SIYG KF DENF KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +H
Sbjct: 74 FTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKH 133
Query: 370 VVFGSVVEGLDVVKKLESMGSQSGKTSK 397
VVFG VVEGLDVVK +ES GSQSGK K
Sbjct: 134 VVFGRVVEGLDVVKAVESNGSQSGKPVK 161
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/143 (72%), Positives = 111/143 (77%), Gaps = 7/143 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L DVVPKTA NFRALCTGE G G FK S FHR+IPNFM QGGDFT NGTGG
Sbjct: 23 ELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG 82
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG KF DENF KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEG
Sbjct: 83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEG 142
Query: 245 LDVVKKLESMGSQSGKTSKKIVL 267
LDVVK +ES GSQSGK K ++
Sbjct: 143 LDVVKAVESNGSQSGKPVKDCMI 165
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/134 (72%), Positives = 111/134 (82%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG K
Sbjct: 23 KLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK 82
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
F DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+
Sbjct: 83 FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 142
Query: 252 ESMGSQSGKTSKKI 265
E GS SGKT+ I
Sbjct: 143 EGKGSASGKTNATI 156
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 110/133 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 24 LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 84 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 143
Query: 387 SMGSQSGKTSKKI 399
GS SGKT+ I
Sbjct: 144 GKGSASGKTNATI 156
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 114/135 (84%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSD+VP+TAENFRALCTGE+GFG+ + FHRVIP FMCQGGDF +GTGGKSIYG KF
Sbjct: 31 LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF L+H G G+LSMAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+E
Sbjct: 91 DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 253 SMGSQSGKTSKKIVL 267
S+GS+SGK + +++
Sbjct: 151 SVGSKSGKVKEPVII 165
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 113/134 (84%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
LRSD+VP+TAENFRALCTGE+GFG+ + FHRVIP FMCQGGDF +GTGGKSIYG KF
Sbjct: 31 LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
+DENF L+H G G+LSMAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+E
Sbjct: 91 DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 387 SMGSQSGKTSKKIV 400
S+GS+SGK + ++
Sbjct: 151 SVGSKSGKVKEPVI 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 112/136 (82%)
Query: 130 KGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 189
K +L DVVPKTA NFRALCTGEKGFG+ S FHRVIP+FM QGGDFT NGTGGKSIYG
Sbjct: 19 KFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYG 78
Query: 190 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 249
KF DENF LKH PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK
Sbjct: 79 AKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVK 138
Query: 250 KLESMGSQSGKTSKKI 265
+E+ GS SGK +I
Sbjct: 139 AIEAEGSGSGKPRSRI 154
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 111/136 (81%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
K L DVVPKTA NFRALCTGEKGFG+ S FHRVIP+FM QGGDFT NGTGGKSIYG
Sbjct: 19 KFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYG 78
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
KF DENF LKH PG+LSMANAGPNTNGSQFFITTV T+WLD +HVVFG V++G++VVK
Sbjct: 79 AKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVK 138
Query: 384 KLESMGSQSGKTSKKI 399
+E+ GS SGK +I
Sbjct: 139 AIEAEGSGSGKPRSRI 154
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/153 (66%), Positives = 115/153 (75%), Gaps = 12/153 (7%)
Query: 260 KTSKKIV--LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDF 310
K + +IV L +D VPKTAENFRALCTGEKG G +K S FHRVIPNFM QGGDF
Sbjct: 19 KAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDF 78
Query: 311 TNHNGTGGKSIYGNKFEDENFTLK---HTGPGILSMANAGPNTNGSQFFITTVKTAWLDN 367
T NGTGG+SIYG F DE+F+ K HTG G LSMANAGPNTNGSQFFI T T WLD
Sbjct: 79 TRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDG 138
Query: 368 RHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
+HVVFG V++GLDVVKK+E +GS SGKT +IV
Sbjct: 139 KHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIV 171
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 111/145 (76%), Gaps = 10/145 (6%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
L +D VPKTAENFRALCTGEKG G +K S FHRVIPNFM QGGDFT NGTGG+
Sbjct: 28 LYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRGNGTGGE 87
Query: 186 SIYGNKFEDENFTLK---HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 242
SIYG F DE+F+ K HTG G LSMANAGPNTNGSQFFI T T WLD +HVVFG V+
Sbjct: 88 SIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVI 147
Query: 243 EGLDVVKKLESMGSQSGKTSKKIVL 267
+GLDVVKK+E +GS SGKT +IV+
Sbjct: 148 DGLDVVKKVERLGSSSGKTRSRIVV 172
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 110/136 (80%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L S++VP+TAENFRALCTGEKGFGFK+S FHRVIP+F+CQGGD T H+GTGG+SIYG+K
Sbjct: 26 ELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDK 85
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
FEDENF +KHTGPG+LSMAN G NTN SQF IT K LD +HVVFG V +G+D VKK+
Sbjct: 86 FEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKI 145
Query: 252 ESMGSQSGKTSKKIVL 267
ES GS G ++I +
Sbjct: 146 ESFGSPKGSVCRRITI 161
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L S++VP+TAENFRALCTGEKGFGFK+S FHRVIP+F+CQGGD T H+GTGG+SIYG+KF
Sbjct: 27 LFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKF 86
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF +KHTGPG+LSMAN G NTN SQF IT K LD +HVVFG V +G+D VKK+E
Sbjct: 87 EDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIE 146
Query: 387 SMGSQSGKTSKKI 399
S GS G ++I
Sbjct: 147 SFGSPKGSVCRRI 159
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 110/152 (72%), Gaps = 8/152 (5%)
Query: 112 YKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMC 171
Y +++SL + +L D+VPKTA+NFR LC KG G+K STFHR+IP FM
Sbjct: 35 YANEESLGRIVM--------KLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMV 86
Query: 172 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL 231
QGGD+T HNGTGG+SIYG KF DENF LKHT GILSMAN G +TNGSQFFIT KT WL
Sbjct: 87 QGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWL 146
Query: 232 DNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK 263
D +HVVFG VVEG+DVV K+ GS+SG+ K
Sbjct: 147 DEKHVVFGEVVEGMDVVHKIAKYGSESGQVKK 178
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 111/155 (71%), Gaps = 10/155 (6%)
Query: 245 LDVVKKLESMGSQSGKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPN 302
DV ES+G +IV L D+VPKTA+NFR LC KG G+K STFHR+IP
Sbjct: 32 FDVYANEESLG--------RIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG 83
Query: 303 FMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKT 362
FM QGGD+T HNGTGG+SIYG KF DENF LKHT GILSMAN G +TNGSQFFIT KT
Sbjct: 84 FMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKT 143
Query: 363 AWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSK 397
WLD +HVVFG VVEG+DVV K+ GS+SG+ K
Sbjct: 144 QWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKK 178
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 108/148 (72%), Gaps = 7/148 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L +D VP TAENFRALCTGEKG G + S FHR+IP FM QGGDFT +GTGG
Sbjct: 39 ELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGG 98
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG+KF DENF H P +LSMANAGPNTNGSQFFITTV WLD +HVVFG V+EG
Sbjct: 99 ESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEG 158
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVV 272
++VVK +E GSQ+GK +K + + + V
Sbjct: 159 MEVVKSIEKCGSQNGKPTKSVCITASGV 186
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 105/140 (75%), Gaps = 7/140 (5%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
L +D VP TAENFRALCTGEKG G + S FHR+IP FM QGGDFT +GTGG+
Sbjct: 40 LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99
Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
SIYG+KF DENF H P +LSMANAGPNTNGSQFFITTV WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 380 DVVKKLESMGSQSGKTSKKI 399
+VVK +E GSQ+GK +K +
Sbjct: 160 EVVKSIEKCGSQNGKPTKSV 179
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 108/138 (78%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 36 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 253 SMGSQSGKTSKKIVLRSD 270
S + S K V+ +D
Sbjct: 156 STKTDSRDKPLKDVIIAD 173
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 103/126 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 36 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 387 SMGSQS 392
S + S
Sbjct: 156 STKTDS 161
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 108/138 (78%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 26 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 85
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 86 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 145
Query: 253 SMGSQSGKTSKKIVLRSD 270
S + S K V+ +D
Sbjct: 146 STKTDSRDKPLKDVIIAD 163
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 103/126 (81%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 26 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 85
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 86 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 145
Query: 387 SMGSQS 392
S + S
Sbjct: 146 STKTDS 151
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT +GTGGKSIYG
Sbjct: 31 IGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGE 90
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
+F DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K
Sbjct: 91 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRK 150
Query: 385 LES 387
+E+
Sbjct: 151 VET 153
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 100/116 (86%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT +GTGGKSIYG +F DENF
Sbjct: 38 VPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENF 97
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 253
LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E+
Sbjct: 98 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVET 153
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT +GTGGKSIYG
Sbjct: 31 IGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGE 90
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
+F DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K
Sbjct: 91 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRK 150
Query: 385 LES 387
+E+
Sbjct: 151 VET 153
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 100/116 (86%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
VPKT +NF AL TGEKGFG+KDS FHRVI +FM QGGDFT +GTGGKSIYG +F DENF
Sbjct: 38 VPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENF 97
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 253
LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E+
Sbjct: 98 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVET 153
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 6/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
IYG F DENF +KH PG+LSMANAGPNTN SQFFIT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 247 VVKKLESMGSQSGKTSKKIVL 267
VV+++E G++SG + +V+
Sbjct: 144 VVREMEKEGAKSGYVKRSVVI 164
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
IYG F DENF +KH PG+LSMANAGPNTN SQFFIT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 381 VVKKLESMGSQSGKTSKKIV 400
VV+++E G++SG + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 105/141 (74%), Gaps = 6/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
IYG F DENF +KH PG+LSMANAGPNTN SQF IT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 247 VVKKLESMGSQSGKTSKKIVL 267
VV+++E G++SG + +V+
Sbjct: 144 VVREMEKEGAKSGYVKRSVVI 164
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 104/140 (74%), Gaps = 6/140 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
IYG F DENF +KH PG+LSMANAGPNTN SQF IT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 381 VVKKLESMGSQSGKTSKKIV 400
VV+++E G++SG + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 105/139 (75%), Gaps = 8/139 (5%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
VPKTA+NFR LC G G+++STFHR+IPNFM QGGDFT NGTGG+SIYG+KF DENF
Sbjct: 33 VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMG 255
+ KH GILSMANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++G
Sbjct: 93 SRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 152
Query: 256 SQSGKTSKKIVLRSDVVPK 274
S SG +RS+ PK
Sbjct: 153 SSSGS------VRSNTRPK 165
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/135 (65%), Positives = 103/135 (76%), Gaps = 6/135 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 331
VPKTA+NFR LC G G+++STFHR+IPNFM QGGDFT NGTGG+SIYG+KF DENF
Sbjct: 33 VPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENF 92
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKKLESMG 389
+ KH GILSMANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK++E++G
Sbjct: 93 SRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 152
Query: 390 SQSGK----TSKKIV 400
S SG T KIV
Sbjct: 153 SSSGSVRSNTRPKIV 167
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 104/144 (72%), Gaps = 8/144 (5%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTG 183
L +D+VPKTAENFRALCTGEKG G FK FHR+I FM QGGDF+N NGTG
Sbjct: 35 ELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
G+SIYG KFEDENF KH G+LSMANAG NTNGSQFFITTV T LD +HVVFG V++
Sbjct: 95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIK 154
Query: 244 GLDVVKKLESMGSQSGKTSKKIVL 267
G+ V K LE++ + K +K V+
Sbjct: 155 GMGVAKILENVEVKGEKPAKLCVI 178
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 10/152 (6%)
Query: 259 GKTSKKIVLR--SDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
G+ +IVL +D+VPKTAENFRALCTGEKG G FK FHR+I FM QGG
Sbjct: 26 GERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGG 85
Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
DF+N NGTGG+SIYG KFEDENF KH G+LSMANAG NTNGSQFFITTV T LD +
Sbjct: 86 DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 145
Query: 369 HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
HVVFG V++G+ V K LE++ + K +K V
Sbjct: 146 HVVFGQVIKGMGVAKILENVEVKGEKPAKLCV 177
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN
Sbjct: 38 PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 258
+KH G LSMANAGPNTNGSQFFITT T WLD RHVVFG V++G+DVV ++E + S
Sbjct: 98 VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNS 156
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN
Sbjct: 38 PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 392
+KH G LSMANAGPNTNGSQFFITT T WLD RHVVFG V++G+DVV ++E + S
Sbjct: 98 VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNS 156
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L + VPKT ENF+ L +GE GFG+K S FHRVI NFM QGGDFTN +GTGGKSIYG
Sbjct: 24 IGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGT 83
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
+F+DEN +KH G +SMANAGPN+NGSQFF+TT T WLD RHVVFG VVEG+DVVKK
Sbjct: 84 RFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKK 142
Query: 385 LESMGSQSGKTSKKIVCFN 403
+E+ + KK V N
Sbjct: 143 VENTKTGLNDKPKKAVKIN 161
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 101/133 (75%), Gaps = 1/133 (0%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
VPKT ENF+ L +GE GFG+K S FHRVI NFM QGGDFTN +GTGGKSIYG +F+DEN
Sbjct: 31 VPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENL 90
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 257
+KH G +SMANAGPN+NGSQFF+TT T WLD RHVVFG VVEG+DVVKK+E+ +
Sbjct: 91 KIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTG 149
Query: 258 SGKTSKKIVLRSD 270
KK V +D
Sbjct: 150 LNDKPKKAVKIND 162
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN
Sbjct: 38 PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 258
+KH G LSMANAGPNTNGSQFFITT T WLD HVVFG V++G+DVV ++E + S
Sbjct: 98 VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNS 156
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 1/120 (0%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF DEN
Sbjct: 38 PLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLN 97
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS 392
+KH G LSMANAGPNTNGSQFFITT T WLD HVVFG V++G+DVV ++E + S
Sbjct: 98 VKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNS 156
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 100/146 (68%), Gaps = 2/146 (1%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
GK +IV L VPKTA NF L KG G+ S FHRVI +FM QGGDFT +GT
Sbjct: 17 GKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGT 76
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
GG+SIYG KF DENF LKH G G LSMANAG +TNGSQFFITTVKT WLD RHVVFG ++
Sbjct: 77 GGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKIL 136
Query: 377 EGLDVVKKLESMGSQSGKTSKKIVCF 402
EG+DVV+K+E G K+ V
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVII 162
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 95/130 (73%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197
VPKTA NF L KG G+ S FHRVI +FM QGGDFT +GTGG+SIYG KF DENF
Sbjct: 32 VPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENF 91
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 257
LKH G G LSMANAG +TNGSQFFITTVKT WLD RHVVFG ++EG+DVV+K+E
Sbjct: 92 KLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKL 151
Query: 258 SGKTSKKIVL 267
G K+ V+
Sbjct: 152 PGDRPKQDVI 161
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 93/122 (76%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L +VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGDFT +GTGG SIYG
Sbjct: 26 IGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGE 85
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
F DENF LKH G G +SMANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV
Sbjct: 86 TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHS 145
Query: 385 LE 386
+E
Sbjct: 146 IE 147
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 92/120 (76%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L +VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGDFT +GTGG SIYG F
Sbjct: 28 LFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETF 87
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKH G G +SMANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E
Sbjct: 88 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 147
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 91/122 (74%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGD T +GTGG SIYG
Sbjct: 34 IGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGE 93
Query: 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 384
F DENF LKH G G +SMANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV
Sbjct: 94 TFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHS 153
Query: 385 LE 386
+E
Sbjct: 154 IE 155
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 90/120 (75%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L VVPKT ENF AL TGEKG+G+K S FHRVI +FM QGGD T +GTGG SIYG F
Sbjct: 36 LFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETF 95
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKH G G +SMANAGP+TNGSQFFIT K WLD +HVVFG V++G+ VV +E
Sbjct: 96 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 97/130 (74%), Gaps = 5/130 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
KI L +DVVPKTAENFR CTGE G+K STFHRVI +FM QGGDF N +GTG
Sbjct: 28 KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 87
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
SIY F DENF L+H+ PG+LSMAN+GP+TNG QFFIT K WLD +HVVFG +++G
Sbjct: 88 ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 379 LDVVKKLESM 388
L V++K+E++
Sbjct: 148 LLVMRKIENV 157
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 101/145 (69%), Gaps = 5/145 (3%)
Query: 130 KGRLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
K L +DVVPKTAENFR CTGE G+K STFHRVI +FM QGGDF N +GTG
Sbjct: 28 KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 87
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
SIY F DENF L+H+ PG+LSMAN+GP+TNG QFFIT K WLD +HVVFG +++G
Sbjct: 88 ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRS 269
L V++K+E++ + K V+ S
Sbjct: 148 LLVMRKIENVPTGPNNKPKLPVVIS 172
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 97/133 (72%), Gaps = 7/133 (5%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEK-----GFGFKDSTFHRVIPNFMCQGGDFTNHNGTG 183
FK L ++VPKT+ENFR CTGE G+K++ FHRVI FM QGGDF NHNG+G
Sbjct: 76 FKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG 135
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV- 242
SIYG KF+DENF +KH G+LSMAN+GPNTNG QFFITT K WLD ++VVFG ++
Sbjct: 136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIID 195
Query: 243 -EGLDVVKKLESM 254
+ L ++KK+E++
Sbjct: 196 NDSLLLLKKIENV 208
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 7/132 (5%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEK-----GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
K L ++VPKT+ENFR CTGE G+K++ FHRVI FM QGGDF NHNG+G
Sbjct: 77 KFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS 136
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-- 376
SIYG KF+DENF +KH G+LSMAN+GPNTNG QFFITT K WLD ++VVFG ++
Sbjct: 137 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN 196
Query: 377 EGLDVVKKLESM 388
+ L ++KK+E++
Sbjct: 197 DSLLLLKKIENV 208
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 10/144 (6%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
G + +IV L +D+ P+T NF LCTG G G +K STFHRVI NFM QGG
Sbjct: 17 GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGG 76
Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
DFT +GTGG+SIYG F+DE F +KH P ++SMAN GPNTNGSQFFITT L+N
Sbjct: 77 DFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNI 136
Query: 369 HVVFGSVVEGLDVVKKLESMGSQS 392
HVVFG VV G +VV K+E + + S
Sbjct: 137 HVVFGKVVSGQEVVTKIEYLKTNS 160
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 91/134 (67%), Gaps = 8/134 (5%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L +D+ P+T NF LCTG G G +K STFHRVI NFM QGGDFT +GTGG
Sbjct: 27 LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 86
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG F+DE F +KH P ++SMAN GPNTNGSQFFITT L+N HVVFG VV G
Sbjct: 87 ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146
Query: 245 LDVVKKLESMGSQS 258
+VV K+E + + S
Sbjct: 147 QEVVTKIEYLKTNS 160
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 47 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 106
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 107 ESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 166
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
+VV+++E+ ++D K R L GE
Sbjct: 167 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 195
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 89/128 (69%), Gaps = 8/128 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 47 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 106
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 107 ESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 166
Query: 379 LDVVKKLE 386
+VV+++E
Sbjct: 167 QEVVREIE 174
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
+VV+++E+ ++D K R L GE
Sbjct: 150 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 178
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 379 LDVVKKLES 387
+VV+++E+
Sbjct: 150 QEVVREIEN 158
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE 286
+VV+++E+ ++D K R L GE
Sbjct: 150 QEVVREIENQ-------------KTDAASKPFAEVRILSCGE 178
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 379 LDVVKKLES 387
+VV+++E+
Sbjct: 150 QEVVREIEN 158
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTG 183
+L SD+ PKT +NF LC+GEKG G +K STFHRV+ NFM QGGDF+ NG G
Sbjct: 39 QLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKG 98
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
G+SIYG F+DENF LKH +LSMAN G +TNGSQFFITT LD HVVFG V+
Sbjct: 99 GESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVIS 158
Query: 244 GLDVVKKLESM 254
G +V++++E++
Sbjct: 159 GFEVIEQIENL 169
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 91/130 (70%), Gaps = 8/130 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SD+ PKT +NF LC+GEKG G +K STFHRV+ NFM QGGDF+ NG GG
Sbjct: 40 LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG F+DENF LKH +LSMAN G +TNGSQFFITT LD HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159
Query: 379 LDVVKKLESM 388
+V++++E++
Sbjct: 160 FEVIEQIENL 169
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 197
PKT ENF C + + TFHR+I FM Q GD T G GG+SI+G +FEDE +
Sbjct: 43 PKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHS 98
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
TL+H P LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++
Sbjct: 99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 331
PKT ENF C + + TFHR+I FM Q GD T G GG+SI+G +FEDE +
Sbjct: 43 PKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHS 98
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 388
TL+H P LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV+++ ++
Sbjct: 99 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 22/153 (14%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
++WY PKT NF LC E GF + ++ FHRVIPNF+ QGGD T G
Sbjct: 54 LYWYHS-----------PKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TG 98
Query: 182 TGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
GGKSIYG FEDE N LKHTG GILSM+N GPNTN SQFFIT LD +H +F
Sbjct: 99 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFAR 158
Query: 241 VVEGLDVVKKLESMGSQSGKTSKKI----VLRS 269
V + + ++ + S+ Q+ T+K I +LR+
Sbjct: 159 VSKNMTCIENIASV--QTTATNKPIFDLKILRT 189
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 7/128 (5%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 331
PKT NF LC E GF + ++ FHRVIPNF+ QGGD T G GGKSIYG FEDE N
Sbjct: 60 PKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINK 115
Query: 332 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 391
LKHTG GILSM+N GPNTN SQFFIT LD +H +F V + + ++ + S+ Q
Sbjct: 116 ELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASV--Q 173
Query: 392 SGKTSKKI 399
+ T+K I
Sbjct: 174 TTATNKPI 181
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 138 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 5/115 (4%)
Query: 272 VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +FEDE +
Sbjct: 32 APKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELH 87
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V ++
Sbjct: 88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRV 142
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 140 KTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT- 198
KT +NF G+ + + FHRVI +FM Q GD + +GTGG+SI+GN+FEDE F
Sbjct: 28 KTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDH 83
Query: 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
L H+ P ++SMAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E +
Sbjct: 84 LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 274 KTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT- 332
KT +NF G+ + + FHRVI +FM Q GD + +GTGG+SI+GN+FEDE F
Sbjct: 28 KTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDH 83
Query: 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 388
L H+ P ++SMAN GPNTNGSQFFITTV WLD +H VFG V +G +V +E +
Sbjct: 84 LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKV 139
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
KI + + PKT ENF ALC + FHR I FM Q GD T G GG SI+G
Sbjct: 13 KIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 68
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
KFEDE + LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ +
Sbjct: 69 KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128
Query: 383 KKLESM 388
+LE +
Sbjct: 129 DELEKL 134
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 197
PKT ENF ALC + FHR I FM Q GD T G GG SI+G KFEDE +
Sbjct: 22 PKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYSE 77
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE +
Sbjct: 78 YLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
KI + + PKT ENF ALC + FHR I FM Q GD T G GG SI+G
Sbjct: 19 KIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 74
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
KFEDE + LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ +
Sbjct: 75 KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 134
Query: 383 KKLESM 388
+LE +
Sbjct: 135 DELEKL 140
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-NF 197
PKT ENF ALC + FHR I FM Q GD T G GG SI+G KFEDE +
Sbjct: 28 PKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDEYSE 83
Query: 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESM 254
LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +LE +
Sbjct: 84 YLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 140
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L D+ PKT ENF LC K + + FHR I NF+ QGGD GTGG+S +G F
Sbjct: 35 LHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGESYWGKPF 90
Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
+DE L HTG GILSMAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +
Sbjct: 91 KDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM 150
Query: 252 ESMGSQSGKTSKKIVLRSDV 271
E++ S K +R D
Sbjct: 151 ENVESDPKTDRPKEEIRIDA 170
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 80/125 (64%), Gaps = 5/125 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L D+ PKT ENF LC K + + FHR I NF+ QGGD GTGG+S +G F
Sbjct: 35 LHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGESYWGKPF 90
Query: 327 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
+DE L HTG GILSMAN+GPN+N SQFFIT A+LD +H +FG VV G DV+ +
Sbjct: 91 KDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAM 150
Query: 386 ESMGS 390
E++ S
Sbjct: 151 ENVES 155
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
PK +NF AL G+ +K++ FH+ I F+ QGGD T G GG+SIYG F+DE +
Sbjct: 38 PKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYP 93
Query: 199 -LKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 253
LK+ GILSMA+ G PNTNGSQFFIT L+ +V+FG +++G + + LE+
Sbjct: 94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLEN 153
Query: 254 MGS-QSGKTSKKIVLRSDVV 272
S +S K +I+++ V+
Sbjct: 154 CPSDKSHKPIDEIIIKDIVI 173
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
PK +NF AL G+ +K++ FH+ I F+ QGGD T G GG+SIYG F+DE +
Sbjct: 38 PKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYP 93
Query: 333 -LKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 387
LK+ GILSMA+ G PNTNGSQFFIT L+ +V+FG +++G + + LE+
Sbjct: 94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLEN 153
Query: 388 MGS 390
S
Sbjct: 154 CPS 156
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 15/139 (10%)
Query: 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 321
S I L +D+ P+ ++F LC + F D+ FHR I NFM QGG + K +
Sbjct: 17 SLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKEV 73
Query: 322 Y-----------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRH 369
G FEDE + L H G G+LSMAN G ++N S+FFIT L+N+H
Sbjct: 74 QQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKH 133
Query: 370 VVFGSVVEGLDVVKKLESM 388
+FG VV GLDV+++ E +
Sbjct: 134 TIFGRVVGGLDVLRQWEKL 152
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 15/134 (11%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY---- 188
L +D+ P+ ++F LC + F D+ FHR I NFM QGG + K +
Sbjct: 22 LHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPR 78
Query: 189 -------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
G FEDE + L H G G+LSMAN G ++N S+FFIT L+N+H +FG
Sbjct: 79 SISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGR 138
Query: 241 VVEGLDVVKKLESM 254
VV GLDV+++ E +
Sbjct: 139 VVGGLDVLRQWEKL 152
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L S PK NF LC + ++ FHRV+P F+ QGGD T G+GG+SIYG
Sbjct: 38 IELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGA 93
Query: 325 KFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 375
F+DE + L+ G+++MANAG + NGSQFF T + L+N+H +FG V
Sbjct: 94 PFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 145
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L S PK NF LC + ++ FHRV+P F+ QGGD T G+GG+SIYG F
Sbjct: 40 LWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAPF 95
Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSV 241
+DE + L+ G+++MANAG + NGSQFF T + L+N+H +FG V
Sbjct: 96 KDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 145
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDST------------FHRVIPNFMCQGGDFT 311
KI L + PKT NF L G K + ++++ FHRVI FM QGGD T
Sbjct: 36 KIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT 95
Query: 312 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
G + ++F E L+ P +L+MANAGP TNGSQFFIT KT L+ RH +
Sbjct: 96 GTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTI 152
Query: 372 FGSVVEG 378
FG V++
Sbjct: 153 FGEVIDA 159
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDST------------FHRVIPNF 169
+H R K L + PKT NF L G K + ++++ FHRVI F
Sbjct: 28 LHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87
Query: 170 MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTA 229
M QGGD T G + ++F E L+ P +L+MANAGP TNGSQFFIT KT
Sbjct: 88 MIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 230 WLDNRHVVFGSVVEG 244
L+ RH +FG V++
Sbjct: 145 HLNRRHTIFGEVIDA 159
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+L +D P+TA NF K + + FHRVI FM QGG F G KS
Sbjct: 14 KLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF--EPGMKQKSTRAPI 68
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVE 243
+ N L + I P++ +QFFI A+LD+ + VFG VVE
Sbjct: 69 KNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVE 128
Query: 244 GLDVVKKLESM--GSQSGKTSKKIVLRSDVVPKTAE 277
G DVV +++S+ GS++G + DV+ + AE
Sbjct: 129 GTDVVDRIKSVATGSRAGHGDVPV---DDVIIEKAE 161
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 253 SMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTN 312
S+ Q+ + + L +D P+TA NF K + + FHRVI FM QGG F
Sbjct: 1 SIKLQTNHGTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF-- 55
Query: 313 HNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR---- 368
G KS + N L + I P++ +QFFI A+LD+
Sbjct: 56 EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTA 115
Query: 369 ----HVVFGSVVEGLDVVKKLESM--GSQSG 393
+ VFG VVEG DVV +++S+ GS++G
Sbjct: 116 HGWGYAVFGEVVEGTDVVDRIKSVATGSRAG 146
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
P + +NF GF + ++TFHRVIP FM QGG FT K K E +N
Sbjct: 26 PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 199 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 251
L++T G ++MA A ++ SQFFI A+LD+ + VFG VV+G+DV K+
Sbjct: 81 LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 252 ----ESMGSQSGKTSKKIVLRSDVV 272
+G SK +V+ S V
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILSATV 164
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
P + +NF GF + ++TFHRVIP FM QGG FT K K E +N
Sbjct: 26 PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 333 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 385
L++T G ++MA A ++ SQFFI A+LD+ + VFG VV+G+DV K+
Sbjct: 81 LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 386 ----ESMGSQSGKTSKKIVCFN 403
+G SK +V +
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILS 161
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198
P + +NF GF + ++TFHRVIP FM QGG FT K K E +N
Sbjct: 26 PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 199 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLE 252
L++T G ++MA A ++ SQFFI A+LD+ + VFG VV+G+DV K+
Sbjct: 81 LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 253 SMGS------QSGKTSKKIVLRSDVVP 273
+ + Q+ + ++L + V+P
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILSAKVLP 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 273 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332
P + +NF GF + ++TFHRVIP FM QGG FT K K E +N
Sbjct: 26 PVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM-QQKKPNPPIKNEADN-G 80
Query: 333 LKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKL- 385
L++T G ++MA A ++ SQFFI A+LD+ + VFG VV+G+DV K+
Sbjct: 81 LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
Query: 386 ----ESMGSQSGKTSKKIVCFN 403
+G SK +V +
Sbjct: 140 QVPTHDVGPYQNVPSKPVVILS 161
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 265 IVLRS--DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 322
IV+++ D P+T +NF C +GF + ++ FHRVI FM QGG F G K+
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATK 65
Query: 323 GNKFEDENFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
+ N LK+T G L+MA P++ +QFFI V +L+ + VF
Sbjct: 66 EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124
Query: 374 SVVEGLDVVKKLESMGS 390
VV+G+DVV K++ + +
Sbjct: 125 EVVDGMDVVDKIKGVAT 141
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 136 DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE 195
D P+T +NF C +GF + ++ FHRVI FM QGG F G K+ +
Sbjct: 18 DKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKNEA 72
Query: 196 NFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLD 246
N LK+T G L+MA P++ +QFFI V +L+ + VF VV+G+D
Sbjct: 73 NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMD 131
Query: 247 VVKKLESMGSQSGKTS-KKIVLRSDVV 272
VV K++ G +G++ + V + DV+
Sbjct: 132 VVDKIK--GVATGRSGMHQDVPKEDVI 156
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 265 IVLRS--DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 322
IV+++ D P+T +NF C +GF + ++ FHRVI FM QGG F G K+
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATK 65
Query: 323 GNKFEDENFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
+ N LK+T G L+MA P++ +QFFI V +L+ + VF
Sbjct: 66 EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124
Query: 374 SVVEGLDVVKKLESMGS 390
VV+G+D V K++ + +
Sbjct: 125 EVVDGMDEVDKIKGVAT 141
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 136 DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE 195
D P+T +NF C +GF + ++ FHRVI FM QGG F G K+ +
Sbjct: 18 DKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKNEA 72
Query: 196 NFTLKHTGPGILSMANA-GPNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEGLD 246
N LK+T G L+MA P++ +QFFI V +L+ + VF VV+G+D
Sbjct: 73 NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMD 131
Query: 247 VVKKLESMGSQSGKTS-KKIVLRSDVV 272
V K++ G +G++ + V + DV+
Sbjct: 132 EVDKIK--GVATGRSGMHQDVPKEDVI 156
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 259 GKTSKKIVLRSDV-----------VPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQG 307
G T K+VL + + P NF LC +G+ + ++ FHRV+ +F+ QG
Sbjct: 18 GSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQG 74
Query: 308 GDFTNHNGTGGKSIY-GNKFEDENFT-LKHTGPGILSMANAGPN--------------TN 351
GD T G + + G F+ E LK G++ +AN G + TN
Sbjct: 75 GDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTN 134
Query: 352 GSQFFITTVKTAWLDNRHVVFGSV 375
G+QFFIT + L+N + +FG V
Sbjct: 135 GNQFFITLARADVLNNAYTLFGKV 158
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY-GNKFEDENF 197
P NF LC +G+ + ++ FHRV+ +F+ QGGD T G + + G F+ E
Sbjct: 43 PLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETH 99
Query: 198 T-LKHTGPGILSMANAGPN--------------TNGSQFFITTVKTAWLDNRHVVFGSV 241
LK G++ +AN G + TNG+QFFIT + L+N + +FG V
Sbjct: 100 PRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
+H K L PKT ENF L +KG + + FHRVI FM QGG F G
Sbjct: 8 LHTNHGVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPG 62
Query: 182 TGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR------- 234
K + N LK+ I P++ +QFFI +L++
Sbjct: 63 LKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 235 -HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDVVPKTA 276
+ VFG VVEG D+V K++++ + S K + V DVV + A
Sbjct: 123 GYAVFGKVVEGQDIVDKIKAVKTGS-KGFHQDVPNDDVVIEKA 164
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
K+ L PKT ENF L +KG + + FHRVI FM QGG F G K
Sbjct: 16 KLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPGLKQKPTDA 70
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR--------HVVFGSV 375
+ N LK+ I P++ +QFFI +L++ + VFG V
Sbjct: 71 PIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKV 130
Query: 376 VEGLDVVKKLESMGSQS 392
VEG D+V K++++ + S
Sbjct: 131 VEGQDIVDKIKAVKTGS 147
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 40/176 (22%)
Query: 245 LDVVKKLESMGSQSGKTSKKIVLRSDVVPKTAENFRALCTGE------KGFG-------- 290
+D+V E +G +I L D P ENF L G+ G G
Sbjct: 19 MDIVLNNEIIGRL------QIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI 72
Query: 291 ---FKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFTLKHTGPGILS 342
++ FH V+ N GD N NG+ ++Y ++ F D + H G+LS
Sbjct: 73 NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLS 130
Query: 343 MA----NAGPNTNGSQFFITT--VKTA----WLDNRHVVFGSVVEGLDVVKKLESM 388
+ +G S F IT ++ + LD VV G V GLDV+ K+ SM
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 34/155 (21%)
Query: 132 RLRSDVVPKTAENFRALCTGE------KGFG-----------FKDSTFHRVIPNFMCQGG 174
+L D P ENF L G+ G G ++ FH V+ N G
Sbjct: 34 KLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSG 93
Query: 175 DFTNHNGTGGKSIYGNK-----FEDENFTLKHTGPGILSMA----NAGPNTNGSQFFITT 225
D N NG+ ++Y ++ F D + H G+LS+ +G S F IT
Sbjct: 94 DIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITL 151
Query: 226 --VKTA----WLDNRHVVFGSVVEGLDVVKKLESM 254
++ + LD VV G V GLDV+ K+ SM
Sbjct: 152 DDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186
>pdb|2I9B|E Chain E, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|F Chain F, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|G Chain G, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|H Chain H, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 31/196 (15%)
Query: 48 KGFKYKVSLSTSGNIEVMV---IRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYK 104
+ Y+ L + EV+ + N+ + T + LE DM C GR
Sbjct: 55 RTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGR--- 111
Query: 105 DKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRAL-----CTGEKGFGFKD 159
+ ++ + ++Q L HW ++G +GR PK + R C G GF +D
Sbjct: 112 HQSLQCRSPEEQCLDVVTHWIQEGEEGR------PKDDRHLRGCGYLPGCPGSNGFHNQD 165
Query: 160 STFH--RVIPNFMCQGGDFTN-----HNG-----TGGKSIYGNKFEDENFTLKHTGPGIL 207
TFH + C G NG G+S +G E E F + GP
Sbjct: 166 -TFHFLKCCQTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSE-ETFLIDCRGPMNQ 223
Query: 208 SMANAGPNTNGSQFFI 223
+ G + Q ++
Sbjct: 224 CLVATGTHEPKQQSYM 239
>pdb|1YWH|A Chain A, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|C Chain C, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|E Chain E, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|G Chain G, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|I Chain I, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|K Chain K, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|M Chain M, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|O Chain O, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
Length = 313
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 48 KGFKYKVSLSTSGNIEVMV---IRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYK 104
+ Y+ L + EV+ + N+ + T + LE DM C GR
Sbjct: 53 RTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGR--- 109
Query: 105 DKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRAL-----CTGEKGFGFKD 159
+ ++ + ++Q L HW ++G +GR PK + R C G GF D
Sbjct: 110 HQSLQCRSPEEQCLDVVTHWIQEGEEGR------PKDDRHLRGCGYLPGCPGSNGFHNND 163
Query: 160 STFH 163
TFH
Sbjct: 164 -TFH 166
>pdb|2FD6|U Chain U, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 276
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 48 KGFKYKVSLSTSGNIEVMV---IRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYK 104
+ Y+ L + EV+ + N+ + T + LE DM C GR
Sbjct: 54 RTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGR--- 110
Query: 105 DKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRAL-----CTGEKGFGFKD 159
+ ++ + ++Q L HW ++G +GR PK + R C G GF D
Sbjct: 111 HQSLQCRSPEEQCLDVVTHWIQEGEEGR------PKDDRHLRGCGYLPGCPGSNGFHNND 164
Query: 160 STFH 163
TFH
Sbjct: 165 -TFH 167
>pdb|3U73|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
pdb|3U74|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant
Length = 283
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 48 KGFKYKVSLSTSGNIEVMV---IRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYK 104
+ Y+ L + EV+ + N+ + T + LE DM C GR
Sbjct: 53 RTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGR--- 109
Query: 105 DKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRAL-----CTGEKGFGFKD 159
+ ++ + ++Q L HW ++G +GR PK + R C G GF D
Sbjct: 110 HQSLQCRSPEEQCLDVVTHWIQEGEEGR------PKDDRHLRGCGYLPGCPGSNGFHNND 163
Query: 160 STFH 163
TFH
Sbjct: 164 -TFH 166
>pdb|3BT1|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 283
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 48 KGFKYKVSLSTSGNIEVMV---IRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYK 104
+ Y+ L + EV+ + N+ + T + LE DM C GR
Sbjct: 55 RTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGR--- 111
Query: 105 DKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRAL-----CTGEKGFGFKD 159
+ ++ + ++Q L HW ++G +GR PK + R C G GF D
Sbjct: 112 HQSLQCRSPEEQCLDVVTHWIQEGEEGR------PKDDRHLRGCGYLPGCPGSNGFHNND 165
Query: 160 STFH 163
TFH
Sbjct: 166 -TFH 168
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 73 DRERATQMIEKALETQENNIPDMLCLC---GRIYKDKFVESQYKDKQSLANAIHWYRKGF 129
D + ++ EKA+E N D + RI F E +YKD AIH+Y K
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD------AIHFYNKSL 106
Query: 130 KGRLRSDVVPKTAENFRALCTGEK 153
DV+ K + + L E+
Sbjct: 107 AEHRTPDVLKKCQQAEKILKEQER 130
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 73 DRERATQMIEKALETQENNIPDMLCLC---GRIYKDKFVESQYKDKQSLANAIHWYRKGF 129
D + ++ EKA+E N D + RI F E +YKD AIH+Y K
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD------AIHFYNKSL 106
Query: 130 KGRLRSDVVPKTAE 143
DV+ K +
Sbjct: 107 AEHRTPDVLKKCQQ 120
>pdb|3MC1|A Chain A, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
pdb|3MC1|B Chain B, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
Length = 226
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 72 DDRERATQMIEKALETQENNIPDMLCL---CGRIYKDKFVESQYKDKQSLANAIHWYRKG 128
D E T+ ++ +L + + D+ L G K F E D+++ AI +YR
Sbjct: 17 DSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTSFXEYYNFDEETATVAIDYYRDY 76
Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGF 157
FK + K + AL + K +GF
Sbjct: 77 FKA--KGXFENKVYDGIEALLSSLKDYGF 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,211,384
Number of Sequences: 62578
Number of extensions: 618910
Number of successful extensions: 1646
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 167
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)