Query psy443
Match_columns 403
No_of_seqs 323 out of 2553
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:52:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 4.8E-48 1E-52 372.4 11.8 148 256-403 16-174 (372)
2 KOG0880|consensus 100.0 8.1E-47 1.7E-51 335.6 13.8 148 256-403 47-198 (217)
3 KOG0882|consensus 100.0 3.1E-42 6.8E-47 337.7 15.4 277 119-403 100-554 (558)
4 KOG0879|consensus 100.0 1.6E-42 3.5E-47 290.2 9.8 155 234-402 10-172 (177)
5 KOG0111|consensus 100.0 3.3E-42 7.2E-47 310.2 10.6 148 256-403 144-293 (298)
6 KOG0881|consensus 100.0 1.6E-42 3.5E-47 287.1 7.0 136 263-402 21-158 (164)
7 KOG0880|consensus 100.0 1.6E-40 3.4E-45 295.5 12.0 161 100-269 36-198 (217)
8 KOG0546|consensus 100.0 7.2E-41 1.6E-45 322.8 10.6 155 106-269 11-174 (372)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 1.3E-39 2.8E-44 287.1 14.3 135 262-402 10-152 (158)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1.1E-39 2.3E-44 287.6 12.0 132 120-257 2-136 (158)
11 cd01926 cyclophilin_ABH_like c 100.0 7.8E-39 1.7E-43 287.4 16.2 146 257-403 9-162 (164)
12 KOG0881|consensus 100.0 3.8E-40 8.3E-45 272.9 6.8 149 118-270 10-160 (164)
13 KOG0883|consensus 100.0 8E-40 1.7E-44 315.1 10.0 142 258-403 284-427 (518)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.8E-38 3.9E-43 280.3 15.5 137 263-403 9-147 (148)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 2E-38 4.2E-43 279.4 15.4 136 263-402 9-145 (146)
16 PTZ00060 cyclophilin; Provisio 100.0 4.7E-38 1E-42 286.8 16.6 147 256-403 23-178 (183)
17 PLN03149 peptidyl-prolyl isome 100.0 8.2E-38 1.8E-42 285.6 17.4 148 256-403 26-182 (186)
18 cd01928 Cyclophilin_PPIL3_like 100.0 7.9E-38 1.7E-42 277.6 15.2 138 262-403 11-150 (153)
19 cd01928 Cyclophilin_PPIL3_like 100.0 7.4E-38 1.6E-42 277.8 14.4 148 118-269 1-150 (153)
20 PTZ00221 cyclophilin; Provisio 100.0 2E-37 4.4E-42 292.2 16.1 144 256-403 60-215 (249)
21 cd01922 cyclophilin_SpCYP2_lik 100.0 1.6E-37 3.4E-42 273.7 13.4 144 121-268 1-145 (146)
22 cd01927 cyclophilin_WD40 cyclo 100.0 1.9E-37 4.2E-42 273.7 13.7 144 121-268 1-146 (148)
23 cd01923 cyclophilin_RING cyclo 100.0 3.8E-37 8.3E-42 275.0 15.3 138 262-403 10-149 (159)
24 cd01923 cyclophilin_RING cyclo 100.0 8.5E-37 1.8E-41 272.7 14.2 146 120-269 2-149 (159)
25 KOG0884|consensus 100.0 3.1E-37 6.6E-42 254.3 9.7 144 118-265 1-147 (161)
26 cd01921 cyclophilin_RRM cyclop 100.0 2.8E-36 6E-41 271.3 15.2 136 263-402 9-154 (166)
27 KOG0883|consensus 100.0 6.7E-37 1.4E-41 295.0 8.6 150 118-271 278-429 (518)
28 KOG0884|consensus 100.0 1.6E-36 3.5E-41 250.0 9.6 138 262-403 11-151 (161)
29 cd01926 cyclophilin_ABH_like c 100.0 7.3E-36 1.6E-40 268.1 14.1 146 124-269 12-162 (164)
30 KOG0111|consensus 100.0 2.4E-36 5.2E-41 272.3 8.5 155 106-269 139-293 (298)
31 cd01921 cyclophilin_RRM cyclop 100.0 2.5E-35 5.4E-40 265.1 13.2 145 121-269 1-155 (166)
32 KOG0879|consensus 100.0 7.5E-36 1.6E-40 250.2 9.0 153 106-267 13-171 (177)
33 KOG0882|consensus 100.0 1.1E-35 2.5E-40 291.6 9.8 148 118-269 405-554 (558)
34 PTZ00060 cyclophilin; Provisio 100.0 2E-34 4.3E-39 263.0 16.0 145 124-269 27-178 (183)
35 cd01920 cyclophilin_EcCYP_like 100.0 1.9E-34 4E-39 256.6 14.7 134 263-402 9-153 (155)
36 PRK10791 peptidyl-prolyl cis-t 100.0 1.8E-34 3.8E-39 258.8 13.9 144 120-269 2-159 (164)
37 PRK10791 peptidyl-prolyl cis-t 100.0 2.5E-34 5.5E-39 257.7 14.7 135 262-402 10-158 (164)
38 PRK10903 peptidyl-prolyl cis-t 100.0 2.1E-34 4.5E-39 263.9 14.2 146 118-269 29-185 (190)
39 cd01925 cyclophilin_CeCYP16-li 100.0 2.9E-34 6.3E-39 259.3 14.8 137 262-402 16-155 (171)
40 PRK10903 peptidyl-prolyl cis-t 100.0 3.1E-34 6.7E-39 262.8 14.7 136 262-403 39-185 (190)
41 cd01925 cyclophilin_CeCYP16-li 100.0 4.1E-34 8.8E-39 258.3 15.0 149 117-269 5-156 (171)
42 cd01920 cyclophilin_EcCYP_like 100.0 2.3E-34 5E-39 256.0 13.1 140 122-267 2-152 (155)
43 PLN03149 peptidyl-prolyl isome 100.0 2.5E-34 5.3E-39 262.8 13.3 145 125-269 31-182 (186)
44 KOG0865|consensus 100.0 1.9E-34 4.2E-39 256.2 9.3 148 256-403 11-163 (167)
45 PTZ00221 cyclophilin; Provisio 100.0 6.2E-33 1.3E-37 261.8 15.4 148 118-269 53-215 (249)
46 cd00317 cyclophilin cyclophili 100.0 2.2E-32 4.9E-37 240.6 15.4 136 263-403 9-146 (146)
47 cd01924 cyclophilin_TLP40_like 100.0 2.8E-32 6.2E-37 247.1 14.5 136 259-402 5-174 (176)
48 cd01924 cyclophilin_TLP40_like 100.0 2E-32 4.2E-37 248.1 12.3 128 123-254 3-165 (176)
49 cd00317 cyclophilin cyclophili 100.0 5.9E-32 1.3E-36 237.9 13.8 143 121-268 1-145 (146)
50 PF00160 Pro_isomerase: Cyclop 100.0 3E-30 6.4E-35 229.2 12.2 137 263-403 12-152 (155)
51 PF00160 Pro_isomerase: Cyclop 100.0 7.2E-30 1.6E-34 226.8 12.7 146 120-269 2-152 (155)
52 KOG0885|consensus 100.0 3.6E-30 7.8E-35 247.8 10.1 143 116-262 11-156 (439)
53 KOG0415|consensus 100.0 4.2E-30 9.2E-35 245.5 9.9 146 118-267 1-156 (479)
54 KOG0885|consensus 100.0 6E-30 1.3E-34 246.2 8.9 138 261-402 22-162 (439)
55 KOG0865|consensus 100.0 1.1E-28 2.4E-33 219.4 8.2 154 106-268 6-162 (167)
56 KOG0415|consensus 99.9 3E-28 6.5E-33 232.9 10.1 135 265-403 14-158 (479)
57 KOG4279|consensus 99.9 1.9E-27 4.1E-32 244.7 4.8 86 1-86 265-351 (1226)
58 PF13281 DUF4071: Domain of un 99.8 7.5E-22 1.6E-26 196.3 -0.2 82 1-82 204-286 (374)
59 PRK00969 hypothetical protein; 99.4 6.5E-12 1.4E-16 127.4 15.2 226 117-386 50-305 (508)
60 TIGR03268 methan_mark_3 putati 99.4 1.5E-11 3.2E-16 124.5 15.5 226 117-386 46-302 (503)
61 COG4070 Predicted peptidyl-pro 98.7 1.5E-07 3.3E-12 92.6 12.5 225 118-386 51-304 (512)
62 TIGR03268 methan_mark_3 putati 98.4 2E-05 4.3E-10 80.6 18.1 222 129-388 203-496 (503)
63 PRK00969 hypothetical protein; 98.4 1.4E-05 3.1E-10 81.8 16.4 222 129-389 206-499 (508)
64 COG4070 Predicted peptidyl-pro 98.0 0.00015 3.2E-09 72.0 13.4 101 129-253 205-305 (512)
65 KOG4279|consensus 95.1 0.013 2.8E-07 62.9 2.5 54 66-119 251-304 (1226)
66 PF13281 DUF4071: Domain of un 93.3 0.029 6.2E-07 56.8 0.6 53 63-115 186-239 (374)
67 PF12903 DUF3830: Protein of u 88.1 0.63 1.4E-05 41.0 3.9 106 128-251 9-128 (147)
68 PF04126 Cyclophil_like: Cyclo 63.6 58 0.0013 27.5 8.6 103 118-253 1-113 (120)
69 PF07719 TPR_2: Tetratricopept 60.2 3.6 7.8E-05 25.6 0.4 21 35-55 13-33 (34)
70 PF12903 DUF3830: Protein of u 58.2 25 0.00053 31.1 5.4 104 265-386 12-129 (147)
71 PF08238 Sel1: Sel1 repeat; I 46.2 8 0.00017 24.9 0.4 17 35-51 20-36 (39)
72 COG2164 Uncharacterized conser 44.4 22 0.00049 29.3 2.8 29 118-147 4-32 (126)
73 smart00671 SEL1 Sel1-like repe 37.1 15 0.00033 23.0 0.6 16 36-51 18-33 (36)
74 smart00028 TPR Tetratricopepti 36.9 22 0.00047 20.1 1.3 21 35-55 13-33 (34)
75 PF14559 TPR_19: Tetratricopep 35.7 23 0.0005 25.6 1.5 53 36-94 4-57 (68)
76 PF13414 TPR_11: TPR repeat; P 33.1 31 0.00068 25.0 1.9 50 34-84 14-64 (69)
77 PF13428 TPR_14: Tetratricopep 32.4 14 0.00031 24.9 -0.1 23 33-55 11-33 (44)
78 KOG1127|consensus 29.2 8.7 0.00019 43.4 -2.4 74 16-103 494-567 (1238)
79 PF05913 DUF871: Bacterial pro 27.8 39 0.00085 34.2 2.1 51 336-387 298-349 (357)
80 PF12260 PIP49_C: Protein-kina 27.8 36 0.00079 31.0 1.7 29 1-30 11-39 (188)
81 PF04126 Cyclophil_like: Cyclo 24.4 89 0.0019 26.4 3.4 47 336-387 60-113 (120)
82 PF06138 Chordopox_E11: Chordo 23.6 3.4E+02 0.0073 23.4 6.6 50 118-169 4-62 (130)
83 PF00515 TPR_1: Tetratricopept 21.8 30 0.00066 21.4 0.0 22 34-55 12-33 (34)
No 1
>KOG0546|consensus
Probab=100.00 E-value=4.8e-48 Score=372.38 Aligned_cols=148 Identities=61% Similarity=0.974 Sum_probs=144.0
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcCCCCC--------ccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 325 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~--------~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~ 325 (403)
+++++|.++| +|+.|.||+|||||+.||||+.|. +|+|+.|||||++|||||||++.++|+||.||||..
T Consensus 16 SI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~ 95 (372)
T KOG0546|consen 16 SIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEK 95 (372)
T ss_pred EeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccc
Confidence 8899999999 999999999999999999999874 699999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443 326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN 403 (403)
Q Consensus 326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~ 403 (403)
|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.||.+.++. ++|..+|+|.|
T Consensus 96 FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~d 174 (372)
T KOG0546|consen 96 FDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISD 174 (372)
T ss_pred cccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 58999999986
No 2
>KOG0880|consensus
Probab=100.00 E-value=8.1e-47 Score=335.56 Aligned_cols=148 Identities=66% Similarity=1.065 Sum_probs=142.6
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhc-CCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCT-GEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 332 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~-g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~ 332 (403)
...+++.++| .||...+|+|++||..||+ +.++++|.++.||||+|||||||||++.++|+||.++||+.|+||++.
T Consensus 47 ~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf~ 126 (217)
T KOG0880|consen 47 EIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENFK 126 (217)
T ss_pred EECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccce
Confidence 4557788887 9999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443 333 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN 403 (403)
Q Consensus 333 ~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~ 403 (403)
++|+++|.|||||.||++||||||||+.+.|||||+|+|||+|++|||+|.+||.++|+. ++|+++|+|.|
T Consensus 127 LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~ 198 (217)
T KOG0880|consen 127 LKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIAN 198 (217)
T ss_pred eecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEee
Confidence 999999999999999999999999999999999999999999999999999999999986 89999999975
No 3
>KOG0882|consensus
Probab=100.00 E-value=3.1e-42 Score=337.65 Aligned_cols=277 Identities=33% Similarity=0.525 Sum_probs=229.5
Q ss_pred eeEEEEeee----eEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCC-cccCC-C--
Q psy443 119 ANAIHWYRK----GFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYG-N-- 190 (403)
Q Consensus 119 ~v~~~T~~G----~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~-~~~~~-~-- 190 (403)
-+.|.|..| -|.|+++.+-.|.-++-|..+| +.++ +++..|-||...++.|.||-.-....+| -..|. +
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 488999999 7999999999999999999999 8888 9999999999999999997433222111 11111 1
Q ss_pred -cccC--CCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCC----Ccccc
Q psy443 191 -KFED--ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS----GKTSK 263 (403)
Q Consensus 191 -~~~~--e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~----~~p~~ 263 (403)
++++ ..+.++|. .-++..........+-+|.+.-...+.+..+..|+|+|.+|-++++.|....+.. ..|.+
T Consensus 177 ~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 1222 24566665 4555555555555667787777777778888888888888888888776654311 11111
Q ss_pred --------------------------------------------------------------------------------
Q psy443 264 -------------------------------------------------------------------------------- 263 (403)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (403)
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~ 335 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNL 335 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccc
Confidence
Q ss_pred -------------------------------------------------------------------------------e
Q psy443 264 -------------------------------------------------------------------------------K 264 (403)
Q Consensus 264 -------------------------------------------------------------------------------~ 264 (403)
+
T Consensus 336 ~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf~ep~~~~~~~dvfne~p~~~~~~~~~~~~g~~~l~~~aiihtt~gd 415 (558)
T KOG0882|consen 336 AALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLFREPEFTESDRDVFNEKPLKEELMEARQEEGNKLLGKAAIIHTTQGD 415 (558)
T ss_pred hhhhhhhccCcccccCCCCeEEEeeeecceEEEEecCCCCcchhhhhccCcChhHhhhhhhccCceecccceEEEecccc
Confidence 3
Q ss_pred e--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443 265 I--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL 341 (403)
Q Consensus 265 I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l 341 (403)
| +||++.||++++||-..| ++|| |+|..|||||++||||+|||.+ +|+||+++||..|+||.. +++|+++-+|
T Consensus 416 i~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~g-~gtggesiwg~dfedefh~~lrhdrpft~ 491 (558)
T KOG0882|consen 416 IHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPLG-DGTGGESIWGKDFEDEFHPNLRHDRPFTV 491 (558)
T ss_pred eEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCCC-CCCCCcccccccchhhcCcccccCCCceE
Confidence 3 899999999999999999 8999 9999999999999999999988 999999999999999985 7999999999
Q ss_pred EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443 342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN 403 (403)
Q Consensus 342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~ 403 (403)
||||+|||+||||||||+.++|||||+|||||||+.|||||.+|+++.|+. +||.++++|+|
T Consensus 492 smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 492 SMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred EecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence 999999999999999999999999999999999999999999999999975 99999999986
No 4
>KOG0879|consensus
Probab=100.00 E-value=1.6e-42 Score=290.24 Aligned_cols=155 Identities=56% Similarity=0.949 Sum_probs=146.1
Q ss_pred ceeEEEeEeecccccccccccCCCCCccccee--eeccccCCcchhhHHHhhcCCCC-----CccCCceEEeecCCeEEE
Q psy443 234 RHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQ 306 (403)
Q Consensus 234 ~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g-----~~Y~g~~f~Rvi~~f~iq 306 (403)
.-+|| ||| .+++.++++| +|+.|.+|+|+|||+..|||+.. .+|+++.|||||++||||
T Consensus 10 nPvVF------~dv--------~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQ 75 (177)
T KOG0879|consen 10 NPVVF------FDV--------AIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQ 75 (177)
T ss_pred CCeEE------EEE--------eeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheec
Confidence 34788 777 7778888887 99999999999999999999742 379999999999999999
Q ss_pred eCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443 307 GGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386 (403)
Q Consensus 307 gGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~ 386 (403)
|||+..++|+|-.++|+.+|+||++.++|..+|+|||||+|+++||.|||||..++.+||++|+|||||++|+.++++||
T Consensus 76 gGDFv~gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIE 155 (177)
T KOG0879|consen 76 GGDFVNGDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIE 155 (177)
T ss_pred cCceecCCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC-CCCccccEEEe
Q psy443 387 SMGSQ-SGKTSKKIVCF 402 (403)
Q Consensus 387 ~~~t~-~~~P~~~i~I~ 402 (403)
.+++- |+||+.+|.|+
T Consensus 156 nvp~G~NnkPKl~v~i~ 172 (177)
T KOG0879|consen 156 NVPTGPNNKPKLPVVIV 172 (177)
T ss_pred cCCCCCCCCCCCcEEEe
Confidence 99995 68999999986
No 5
>KOG0111|consensus
Probab=100.00 E-value=3.3e-42 Score=310.24 Aligned_cols=148 Identities=68% Similarity=1.140 Sum_probs=142.1
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL 333 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~ 333 (403)
.+...+.++| .|..+.+|++++||..||+|++||+|+|++||||||.||+||||+++++|+||.++||..|+||++.+
T Consensus 144 kig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~l 223 (298)
T KOG0111|consen 144 KIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFTL 223 (298)
T ss_pred eecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccceee
Confidence 3455667777 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443 334 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403 (403)
Q Consensus 334 ~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~ 403 (403)
+|+.+|+|||||+|+|+|||||||++....|||++|+|||.|+|||+||+++|+..+.+++|...|+|++
T Consensus 224 kht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~ 293 (298)
T KOG0111|consen 224 KHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVE 293 (298)
T ss_pred ecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
No 6
>KOG0881|consensus
Probab=100.00 E-value=1.6e-42 Score=287.08 Aligned_cols=136 Identities=49% Similarity=0.877 Sum_probs=130.6
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL 341 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l 341 (403)
..+|||-..+|++|+||..|+ ++|| |+|+.||||+++||||||||++ .|.||.++||..|+||-. .++|...|+|
T Consensus 21 i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPTG-TGRGGaSIYG~kF~DEi~~dLkhTGAGIL 96 (164)
T KOG0881|consen 21 ITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPTG-TGRGGASIYGDKFEDEIHSDLKHTGAGIL 96 (164)
T ss_pred eehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCCC-CCCCccccccchhhhhhhhhhcccchhhh
Confidence 345999999999999999999 9999 9999999999999999999998 899999999999999975 6999999999
Q ss_pred EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEe
Q psy443 342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCF 402 (403)
Q Consensus 342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~ 402 (403)
||||+|||+|||||||||.|.+||||+|++||||..||+|+++|..+.|++ +||+.+++|+
T Consensus 97 sMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIi 158 (164)
T KOG0881|consen 97 SMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKII 158 (164)
T ss_pred hhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeE
Confidence 999999999999999999999999999999999999999999999999987 8999999996
No 7
>KOG0880|consensus
Probab=100.00 E-value=1.6e-40 Score=295.46 Aligned_cols=161 Identities=58% Similarity=0.960 Sum_probs=148.5
Q ss_pred cccccccccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhc-CCCCcccCCCEEEeeeCCeEEEeCcCCC
Q psy443 100 GRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCT-GEKGFGFKDSTFHRVIPNFMCQGGDFTN 178 (403)
Q Consensus 100 ~~v~~~~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~-g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~ 178 (403)
+++.-..++|.++-++ ..|+|+|+||++.+|+||+||..||. +.++++|.++.||||+|||||||||++.
T Consensus 36 p~vT~kV~fdi~~g~~---------~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~ 106 (217)
T KOG0880|consen 36 PKVTHKVYFDIEIGGE---------PVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTK 106 (217)
T ss_pred CcceeEEEEEEEECCE---------eccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCcccc
Confidence 3455566667677665 78999999999999999999999998 8899999999999999999999999999
Q ss_pred CCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-C
Q psy443 179 HNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-Q 257 (403)
Q Consensus 179 ~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~ 257 (403)
+++.|+.+++|.+|+||+..++|+++|.||||+.+||+||||||||+...+|||++|+|||+|++||++|.+|+.+.+ .
T Consensus 107 g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~ 186 (217)
T KOG0880|consen 107 GDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDE 186 (217)
T ss_pred CCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCcccceeeecc
Q psy443 258 SGKTSKKIVLRS 269 (403)
Q Consensus 258 ~~~p~~~I~L~~ 269 (403)
.++|...+.|..
T Consensus 187 ~dkP~e~v~I~~ 198 (217)
T KOG0880|consen 187 RDKPLEDVVIAN 198 (217)
T ss_pred CCCccccEEEee
Confidence 678888775544
No 8
>KOG0546|consensus
Probab=100.00 E-value=7.2e-41 Score=322.77 Aligned_cols=155 Identities=57% Similarity=0.901 Sum_probs=147.4
Q ss_pred cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCc--------ccCCCEEEeeeCCeEEEeCcCC
Q psy443 106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPNFMCQGGDFT 177 (403)
Q Consensus 106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~--------~Y~~~~f~Rv~~~~~iqgGd~~ 177 (403)
+|+|++|..+ ..|+|++|||.|.+|+||+||..||+|+.|. .|.|+.||||+++|||||||++
T Consensus 11 ~ffDISI~ge---------~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs 81 (372)
T KOG0546|consen 11 VFFDISIGGE---------PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFS 81 (372)
T ss_pred EEEEEEeCCc---------ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccc
Confidence 8999999998 8999999999999999999999999999984 4999999999999999999999
Q ss_pred CCCCCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC
Q psy443 178 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 257 (403)
Q Consensus 178 ~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~ 257 (403)
.++|+||.|+||..|+||++.++|+++++||||+.|||+||||||||+.++||||+.|+|||+||.|++||+.|+.+.++
T Consensus 82 ~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d 161 (372)
T KOG0546|consen 82 EGNGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETD 161 (372)
T ss_pred cCCCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred C-Ccccceeeecc
Q psy443 258 S-GKTSKKIVLRS 269 (403)
Q Consensus 258 ~-~~p~~~I~L~~ 269 (403)
. +.|..+|+|..
T Consensus 162 ~~skP~~dV~I~d 174 (372)
T KOG0546|consen 162 EESKPLADVVISD 174 (372)
T ss_pred cCCCCccceEecc
Confidence 4 47988886654
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=287.14 Aligned_cols=135 Identities=48% Similarity=0.794 Sum_probs=123.1
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCC--Cc
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTG--PG 339 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~--~G 339 (403)
...|+|+.+.||+||+||+.|| +.|| |+|+.||||+|+||+||||++++.+.+|++ .+|++|.+...|++ +|
T Consensus 10 ~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~~~~~~G 83 (158)
T COG0652 10 DITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNGDRHKRG 83 (158)
T ss_pred CEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccccccccccCCcc
Confidence 3556999999999999999999 7899 999999999999999999999987888875 88999998888877 99
Q ss_pred EEEEecCC-CCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443 340 ILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF 402 (403)
Q Consensus 340 ~lsma~~g-~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~ 402 (403)
+|||||.+ ||||+|||||++.++||||++|+|||+|++|||+|++|++..+.+ +.|..+++|.
T Consensus 84 ~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~ 152 (158)
T COG0652 84 TLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKIL 152 (158)
T ss_pred eEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEe
Confidence 99999999 999999999999999999999999999999999999999987764 4566666664
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=287.63 Aligned_cols=132 Identities=49% Similarity=0.805 Sum_probs=124.4
Q ss_pred eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443 120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL 199 (403)
Q Consensus 120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~ 199 (403)
+.++|++|+|+||||++.||+||+||++|| +.|| |+++.||||+++||+|||||+.+.+.|++ +.++++|....
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~ 75 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFAL 75 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccccc
Confidence 678999999999999999999999999999 8899 99999999999999999999997688887 47899998888
Q ss_pred CCCc--cceeeecccC-CCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC
Q psy443 200 KHTG--PGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ 257 (403)
Q Consensus 200 ~h~~--~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~ 257 (403)
.|++ +|+||||+++ |++++|||||++.++|+||++|+|||+|++|||+|++|++....
T Consensus 76 ~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~ 136 (158)
T COG0652 76 NGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTD 136 (158)
T ss_pred ccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCcc
Confidence 7877 9999999999 99999999999999999999999999999999999999997654
No 11
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.8e-39 Score=287.37 Aligned_cols=146 Identities=75% Similarity=1.180 Sum_probs=135.3
Q ss_pred CCCccccee--eeccccCCcchhhHHHhhcCCCC------CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443 257 QSGKTSKKI--VLRSDVVPKTAENFRALCTGEKG------FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED 328 (403)
Q Consensus 257 ~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g------~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~ 328 (403)
..+.+.++| +|+.+.+|++++||++||++.++ + |+++.||||+|+|+||+||+...++.++.++++..+++
T Consensus 9 i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~ 87 (164)
T cd01926 9 IGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPD 87 (164)
T ss_pred ECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCC
Confidence 344456665 99999999999999999987666 5 99999999999999999998877888889999999999
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443 329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403 (403)
Q Consensus 329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~ 403 (403)
|...++|+++|+|+||+.++++++|||||+++++|+||++|+|||||++|||||++|+++++++++|+++|+|.+
T Consensus 88 e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~ 162 (164)
T cd01926 88 ENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIAD 162 (164)
T ss_pred CCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEE
Confidence 988999999999999999999999999999999999999999999999999999999999999889999999975
No 12
>KOG0881|consensus
Probab=100.00 E-value=3.8e-40 Score=272.94 Aligned_cols=149 Identities=45% Similarity=0.770 Sum_probs=140.9
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN- 196 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~- 196 (403)
..|.++|++|.|.+|||-+.||+||+||.+|+ +.|| |++..||||+++||||||||++ +|+|+.++||.+|+||.
T Consensus 10 ~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPTG-TGRGGaSIYG~kF~DEi~ 85 (164)
T KOG0881|consen 10 PNVTLETSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPTG-TGRGGASIYGDKFEDEIH 85 (164)
T ss_pred CeEEEeecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCCC-CCCCccccccchhhhhhh
Confidence 56999999999999999999999999999999 8999 9999999999999999999998 99999999999999995
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeeccc
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRSD 270 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~d 270 (403)
.+++|...|.||||+++||+|+|||||+|.+.++||++|++||||..||+|+.++..+.+ ..++|+.++++...
T Consensus 86 ~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika 160 (164)
T KOG0881|consen 86 SDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA 160 (164)
T ss_pred hhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence 579999999999999999999999999999999999999999999999999999998875 56788888877654
No 13
>KOG0883|consensus
Probab=100.00 E-value=8e-40 Score=315.15 Aligned_cols=142 Identities=45% Similarity=0.815 Sum_probs=134.3
Q ss_pred CCcccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCC
Q psy443 258 SGKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHT 336 (403)
Q Consensus 258 ~~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~ 336 (403)
++...-.|||+.|.+|.+|+||+.|| ++|| |+++.|||.|+|||||||||++ .|.||.|+||.+|.||.. .+.|+
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPTG-TG~GGeSiWgKpFkDEf~~~l~H~ 359 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFCSNLSHD 359 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCCC-CCCCCccccCCccccccCCCCCcC
Confidence 34445566999999999999999999 8999 9999999999999999999998 999999999999999986 69999
Q ss_pred CCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC-CCccccEEEeC
Q psy443 337 GPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS-GKTSKKIVCFN 403 (403)
Q Consensus 337 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~-~~P~~~i~I~~ 403 (403)
.||+|||||+|||+|||||||+++++.|||++||+|||||.|+|+|.+||.+++++ ++|+.+|+|.+
T Consensus 360 gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~ 427 (518)
T KOG0883|consen 360 GRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIED 427 (518)
T ss_pred CcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEee
Confidence 99999999999999999999999999999999999999999999999999999986 89999999964
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.8e-38 Score=280.30 Aligned_cols=137 Identities=53% Similarity=0.879 Sum_probs=127.9
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcEE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGIL 341 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~l 341 (403)
..|+|+.+.+|++++||+.|| +.++ |+++.||||+|+|++||||+.+ .+.++.++++.+|++|.. .++|.++|+|
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~~h~~~G~l 84 (148)
T cd01927 9 IHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKEFEDEFSPSLKHDRPYTL 84 (148)
T ss_pred EEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCCCcccCCccccccccccCcCCCeEE
Confidence 455999999999999999999 6788 9999999999999999999875 788888999999999976 7889989999
Q ss_pred EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
+||+.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+
T Consensus 85 ~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 85 SMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred EEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999985 589999999974
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2e-38 Score=279.38 Aligned_cols=136 Identities=49% Similarity=0.865 Sum_probs=127.5
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC-CCCCCCCCcEE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGIL 341 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~-~~~~h~~~G~l 341 (403)
..|+|+.+.+|++++||++|| +.|| |+++.||||+|+|++||||+.+ .+.++.++++.+|++|. ..++|+++|+|
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~~~~~~~~~~~~~e~~~~~~h~~~G~l 84 (146)
T cd01922 9 ITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIHPELKHTGAGIL 84 (146)
T ss_pred EEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCcccccCCCcccccccCcCCCCCeEE
Confidence 445999999999999999999 6788 9999999999999999999875 67778889999999985 47889999999
Q ss_pred EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEe
Q psy443 342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCF 402 (403)
Q Consensus 342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~ 402 (403)
+||+.+|++++|||||+++++|+||++|+|||||++|||||++|+.+++++++|+++|+|.
T Consensus 85 ~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 85 SMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred EEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 9999999999999999999999999999999999999999999999999888999999996
No 16
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=4.7e-38 Score=286.81 Aligned_cols=147 Identities=65% Similarity=1.076 Sum_probs=134.9
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcC-------CCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTG-------EKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g-------~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~ 326 (403)
...+.+.++| +|+.+.+|++++||++||+| +.++ |+++.||||+|+|+||+||+....+.++.++++..+
T Consensus 23 ~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~ 101 (183)
T PTZ00060 23 SIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKF 101 (183)
T ss_pred EECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCCCccccccc
Confidence 3344455665 99999999999999999975 3456 999999999999999999998778889999999999
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403 (403)
Q Consensus 327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~ 403 (403)
++|...++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+.+++.+++|+++|+|++
T Consensus 102 ~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~ 178 (183)
T PTZ00060 102 TDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD 178 (183)
T ss_pred CCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence 99988999999999999999999999999999999999999999999999999999999999998899999999975
No 17
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=8.2e-38 Score=285.65 Aligned_cols=148 Identities=57% Similarity=0.964 Sum_probs=134.5
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcCCC---C--CccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEK---G--FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED 328 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~---g--~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~ 328 (403)
...+.+.++| +|+.+.+|++++||+.||+|+. | .+|+++.||||+|+|+|||||+..+++.|+.++++..|++
T Consensus 26 ~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~ 105 (186)
T PLN03149 26 TIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFED 105 (186)
T ss_pred eeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCC
Confidence 3344556666 9999999999999999997643 2 2599999999999999999999877888999999999999
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
|.+..+|+++|+|||++.++++++|||||++.++|+||++|+|||||+ +|||||++|+.++++ +++|+++|+|.+
T Consensus 106 e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~ 182 (186)
T PLN03149 106 ENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISE 182 (186)
T ss_pred cccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 998899999999999999999999999999999999999999999999 799999999999995 589999999975
No 18
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.9e-38 Score=277.61 Aligned_cols=138 Identities=48% Similarity=0.766 Sum_probs=127.7
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI 340 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~ 340 (403)
...|+|+.+.+|++++||+.|| +.++ |+++.||||+|+|++||||+.+ ++.++.++++.+|++|.. .++|+++|+
T Consensus 11 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~~~~~~G~ 86 (153)
T cd01928 11 DIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWGKKFEDEFRETLKHDSRGV 86 (153)
T ss_pred cEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccCC-CCCCCCccCCCccccccccCCCcCCCcE
Confidence 3455999999999999999999 6788 9999999999999999999875 677888999999999976 578989999
Q ss_pred EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
|+||+.++++++|||||+++++|+||++|+|||||++|||+|++|++++++ +++|+.+|+|.+
T Consensus 87 v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 150 (153)
T cd01928 87 VSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150 (153)
T ss_pred EEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEE
Confidence 999999999999999999999999999999999999999999999999985 589999999963
No 19
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.4e-38 Score=277.79 Aligned_cols=148 Identities=45% Similarity=0.733 Sum_probs=136.4
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~ 197 (403)
|+|+|+|+.|+|+||||++.||++|+||++|| +.+| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|..
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~ 76 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWGKKFEDEFR 76 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccCC-CCCCCCccCCCccccccc
Confidence 67999999999999999999999999999999 7889 9999999999999999999976 778888888889998875
Q ss_pred -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443 198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
.+.|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|++++. ..++|..+|+|..
T Consensus 77 ~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 150 (153)
T cd01928 77 ETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150 (153)
T ss_pred cCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEE
Confidence 57888999999999999999999999999999999999999999999999999999886 5678888876653
No 20
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2e-37 Score=292.22 Aligned_cols=144 Identities=35% Similarity=0.479 Sum_probs=130.3
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcCCCCC--------ccCCceEEeecCC-eEEEeCcCCCCCCCCCcccCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPN-FMCQGGDFTNHNGTGGKSIYGN 324 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~--------~Y~g~~f~Rvi~~-f~iqgGd~~~~~g~gg~~~~g~ 324 (403)
++++.+.++| +|+.+.+|++++||+.||+|+.+. +|+++.||||+++ |+||+||+.. ++.+++|.
T Consensus 60 sig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~ 135 (249)
T PTZ00221 60 SIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGT 135 (249)
T ss_pred eeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCC
Confidence 6666777777 999999999999999999876542 3999999999985 8999999864 24567889
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 325 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 325 ~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
+|++|++.++|+++|+||||+.|||+||||||||+.++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+
T Consensus 136 ~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~ 215 (249)
T PTZ00221 136 PIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSF 215 (249)
T ss_pred cccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 689999999974
No 21
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.6e-37 Score=273.66 Aligned_cols=144 Identities=47% Similarity=0.801 Sum_probs=133.2
Q ss_pred EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-Ccc
Q psy443 121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FTL 199 (403)
Q Consensus 121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~-~~~ 199 (403)
+|+|+.|+|+||||.+.||++|+||++|| +.|| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|. ..+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~~~~~~~~~~~~~e~~~~~ 76 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIHPEL 76 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCcccccCCCcccccccCc
Confidence 37899999999999999999999999999 7899 9999999999999999999876 67788888888898885 478
Q ss_pred CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeec
Q psy443 200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLR 268 (403)
Q Consensus 200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~ 268 (403)
+|.++|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|+++++..++|..+|+|.
T Consensus 77 ~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 77 KHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred CCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 899999999999999999999999999999999999999999999999999999987777888888664
No 22
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.9e-37 Score=273.73 Aligned_cols=144 Identities=51% Similarity=0.846 Sum_probs=133.3
Q ss_pred EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-cc
Q psy443 121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TL 199 (403)
Q Consensus 121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-~~ 199 (403)
+|+|++|+|+||||++.||++|+||++|| +.+| |+++.||||+|+|++||||+.+ ++.++.+.++..+++|.. .+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~-~g~g~~~~~~~~~~~e~~~~~ 76 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKEFEDEFSPSL 76 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccCC-CCCCCCcccCCcccccccccc
Confidence 47899999999999999999999999999 7888 9999999999999999999875 788888888888999875 78
Q ss_pred CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeec
Q psy443 200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLR 268 (403)
Q Consensus 200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~ 268 (403)
.|.++|+|+||++++++++|||||++.++|+||++|+|||||++|||+|++|+++++ ..++|..+|+|.
T Consensus 77 ~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~ 146 (148)
T cd01927 77 KHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKII 146 (148)
T ss_pred CcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEE
Confidence 899899999999999999999999999999999999999999999999999999886 467888888664
No 23
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.8e-37 Score=274.96 Aligned_cols=138 Identities=47% Similarity=0.813 Sum_probs=127.9
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI 340 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~ 340 (403)
...|+|+.+.+|++++||+.|| +.|+ |+++.||||+|+|++|+||+.+ .+.++.++++.++++|.. .++|+++|+
T Consensus 10 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~g~~~~~~~g~~~~~E~~~~~~h~~~G~ 85 (159)
T cd01923 10 DLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFKPNLSHDGRGV 85 (159)
T ss_pred cEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccCC-CCCCCccccCCccCcccccCcCcCCCcE
Confidence 3455999999999999999999 6888 9999999999999999999975 778889999999999864 678999999
Q ss_pred EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
|+||+.++++++|||||+++++|+||++|+|||||++|||+|++|+.++++ +++|+++|+|.+
T Consensus 86 v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 149 (159)
T cd01923 86 LSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149 (159)
T ss_pred EEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999885 589999999964
No 24
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.5e-37 Score=272.74 Aligned_cols=146 Identities=45% Similarity=0.785 Sum_probs=134.7
Q ss_pred eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC-c
Q psy443 120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-T 198 (403)
Q Consensus 120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~-~ 198 (403)
|+|+|+.|+|+||||++.||++|+||++|| +.|| |+++.||||+|++++||||+.+ ++.++.+.++..+++|.. .
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~-~g~~~~~~~g~~~~~E~~~~ 77 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFKPN 77 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccCC-CCCCCccccCCccCcccccC
Confidence 789999999999999999999999999999 7899 9999999999999999999976 788888888989988854 6
Q ss_pred cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
++|+++|+|+|+++++++++|||||++.++|+||++|+|||||++||++|++|+..+. ..++|..+|++..
T Consensus 78 ~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 149 (159)
T cd01923 78 LSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149 (159)
T ss_pred cCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence 7898999999999999999999999999999999999999999999999999999875 5678888775554
No 25
>KOG0884|consensus
Probab=100.00 E-value=3.1e-37 Score=254.27 Aligned_cols=144 Identities=44% Similarity=0.702 Sum_probs=134.8
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~ 197 (403)
|+|+++|..|+|+||||.+.+|++|+||+.|| ...| |+++.|||-+|+||+|+|+++- +|+||.++||.+|++|..
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~~-tgrgg~siwg~~fede~~ 76 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPTH-TGRGGNSIWGKKFEDEYS 76 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCCC-CCCCCccccCCcchHHHH
Confidence 67999999999999999999999999999999 7778 9999999999999999999987 999999999999999965
Q ss_pred -ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CCCccccee
Q psy443 198 -TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGKTSKKI 265 (403)
Q Consensus 198 -~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~~~p~~~I 265 (403)
-++|+.||+||||+.+|++++|||||+++..|+||.+|+|||+|++|+|.|+.|+..+. .+.+|..++
T Consensus 77 ~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~ 147 (161)
T KOG0884|consen 77 EYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDV 147 (161)
T ss_pred HHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchhe
Confidence 68999999999999999999999999999999999999999999999999999999875 335666655
No 26
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.8e-36 Score=271.31 Aligned_cols=136 Identities=42% Similarity=0.637 Sum_probs=122.0
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCC-------CCCCCCCC-CCC
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG-------NKFEDENF-TLK 334 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g-------~~~~~e~~-~~~ 334 (403)
..|+|+.+.+|++++||++|| +.++ |+++.||||+|+|+|||||+.. .+.++.++++ ..+++|.. .++
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~~-~g~~~~~~~~~~~~~~~~~~~~e~~~~~~ 84 (166)
T cd01921 9 LVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLYGRQARFFEPEILPLLK 84 (166)
T ss_pred EEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcCC-CCCCCcccccccccccCcccCcccCCccc
Confidence 445999999999999999999 6788 9999999999999999999975 6677776654 34666754 678
Q ss_pred CCCCcEEEEecCCCCCCcceEEEEecC-CCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443 335 HTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCF 402 (403)
Q Consensus 335 h~~~G~lsma~~g~~s~gSqFfItl~~-~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~ 402 (403)
|+++|+|+||+.++++++|||||++.+ +|+||++|+|||||++|||||++|+.++++ +++|+++|+|.
T Consensus 85 h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~ 154 (166)
T cd01921 85 HSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154 (166)
T ss_pred cCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEE
Confidence 999999999999999999999999975 799999999999999999999999999985 58999999996
No 27
>KOG0883|consensus
Probab=100.00 E-value=6.7e-37 Score=294.99 Aligned_cols=150 Identities=43% Similarity=0.749 Sum_probs=141.8
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN- 196 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~- 196 (403)
..|.++|+.|+|-|||+.|.+|++|+||++|| ++|| |+++.|||.+++||||||||++ +|.||.++||.+|.||.
T Consensus 278 gyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPTG-TG~GGeSiWgKpFkDEf~ 353 (518)
T KOG0883|consen 278 GYVRLVTNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPFKDEFC 353 (518)
T ss_pred ceEEEeccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCCC-CCCCCccccCCccccccC
Confidence 67999999999999999999999999999999 9999 9999999999999999999998 99999999999999995
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecccc
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRSDV 271 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~d~ 271 (403)
..+.|..||+||||++|||+|||||||+++.+.+||.+|++||||+.|+++|++|+++++ ..+.|...|.|....
T Consensus 354 ~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~ 429 (518)
T KOG0883|consen 354 SNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAI 429 (518)
T ss_pred CCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeE
Confidence 589999999999999999999999999999999999999999999999999999999986 457888888665543
No 28
>KOG0884|consensus
Probab=100.00 E-value=1.6e-36 Score=249.99 Aligned_cols=138 Identities=46% Similarity=0.722 Sum_probs=129.3
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI 340 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~ 340 (403)
..+|+++.+.+|++||||+.|| ...| |++++|||-+|+|++|.||++. .|.||.++||.+|+||.. -++|+.||+
T Consensus 11 dikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~~-tgrgg~siwg~~fede~~~~lkh~~rg~ 86 (161)
T KOG0884|consen 11 DIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPTH-TGRGGNSIWGKKFEDEYSEYLKHNVRGV 86 (161)
T ss_pred cEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCCC-CCCCCccccCCcchHHHHHHHhhcccee
Confidence 3466999999999999999999 5567 9999999999999999999987 899999999999999986 599999999
Q ss_pred EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCC--CCccccEEEeC
Q psy443 341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQS--GKTSKKIVCFN 403 (403)
Q Consensus 341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~--~~P~~~i~I~~ 403 (403)
|||||.||++|+||||||.++.||||-+|++||+||+|+|.|++||.++.++ -||+.++.|-|
T Consensus 87 vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~ 151 (161)
T KOG0884|consen 87 VSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151 (161)
T ss_pred EEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeee
Confidence 9999999999999999999999999999999999999999999999999977 59999888764
No 29
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=7.3e-36 Score=268.10 Aligned_cols=146 Identities=75% Similarity=1.175 Sum_probs=133.8
Q ss_pred EeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-----cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCc
Q psy443 124 WYRKGFKGRLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFT 198 (403)
Q Consensus 124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-----~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~ 198 (403)
++.|+|+||||.+.||++|+||++||++.++ ++|+++.||||+|+|++||||+..+++.++.+.++..+++|...
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~ 91 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFK 91 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCcc
Confidence 4899999999999999999999999976566 23999999999999999999987667888888889999999888
Q ss_pred cCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443 199 LKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS 269 (403)
Q Consensus 199 ~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~ 269 (403)
+.|+++|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|+++++..++|..+|+|..
T Consensus 92 ~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~ 162 (164)
T cd01926 92 LKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIAD 162 (164)
T ss_pred ccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEE
Confidence 99989999999999999999999999999999999999999999999999999999877778888876643
No 30
>KOG0111|consensus
Probab=100.00 E-value=2.4e-36 Score=272.35 Aligned_cols=155 Identities=64% Similarity=1.065 Sum_probs=147.9
Q ss_pred cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCc
Q psy443 106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185 (403)
Q Consensus 106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~ 185 (403)
.+.+..+... ..|+|+++|..|..|.|++||..||+|++||+|.++.||||+|.||+||||+++++|+|+.
T Consensus 139 v~~~ikig~~---------~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggk 209 (298)
T KOG0111|consen 139 VYHDIKIGED---------RAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGK 209 (298)
T ss_pred hhhheeeccc---------ccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCc
Confidence 5555566555 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCccccee
Q psy443 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI 265 (403)
Q Consensus 186 ~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I 265 (403)
++||..|.+|++.++|..+|+||||++++|+||||||||.....+||++|+|||.|++||+||+++++.++..++|..+|
T Consensus 210 siygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv 289 (298)
T KOG0111|consen 210 SIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKV 289 (298)
T ss_pred ccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecc
Q psy443 266 VLRS 269 (403)
Q Consensus 266 ~L~~ 269 (403)
.|+.
T Consensus 290 ~i~~ 293 (298)
T KOG0111|consen 290 KIVE 293 (298)
T ss_pred EEEe
Confidence 7765
No 31
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.5e-35 Score=265.12 Aligned_cols=145 Identities=39% Similarity=0.587 Sum_probs=126.9
Q ss_pred EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCC-------Cccc
Q psy443 121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG-------NKFE 193 (403)
Q Consensus 121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~-------~~~~ 193 (403)
.|+|+.|+|+||||++.||++|+||++|| +.++ |+++.||||+|+|++||||+.. ++.++.+.++ ..++
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~~-~g~~~~~~~~~~~~~~~~~~~ 76 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLYGRQARFFE 76 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcCC-CCCCCcccccccccccCcccC
Confidence 37899999999999999999999999999 7888 9999999999999999999976 6777666554 2355
Q ss_pred CCC-CccCCCccceeeecccCCCCCcceeEEEecc-CcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443 194 DEN-FTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 194 ~e~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~-~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
+|. ..++|+++|+|+||++++++++|||||++.+ .|+||++|+|||||++|||+|++|+++.. ..++|..+|+|..
T Consensus 77 ~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~ 155 (166)
T cd01921 77 PEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKH 155 (166)
T ss_pred cccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEE
Confidence 664 4678989999999999999999999999976 79999999999999999999999999875 4578887775543
No 32
>KOG0879|consensus
Probab=100.00 E-value=7.5e-36 Score=250.16 Aligned_cols=153 Identities=54% Similarity=0.898 Sum_probs=141.7
Q ss_pred cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCC-----cccCCCEEEeeeCCeEEEeCcCCCCC
Q psy443 106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHN 180 (403)
Q Consensus 106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g-----~~Y~~~~f~Rv~~~~~iqgGd~~~~~ 180 (403)
+|.|..+.+. ..|+|+||||.|.+|+|++||.+.|+|+-. .+|++++||||+++|||||||+.+++
T Consensus 13 VF~dv~igg~---------~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD 83 (177)
T KOG0879|consen 13 VFFDVAIGGR---------PIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD 83 (177)
T ss_pred EEEEEeeCCE---------EcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCC
Confidence 7888888875 899999999999999999999999998432 46999999999999999999999999
Q ss_pred CCCCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCC
Q psy443 181 GTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSG 259 (403)
Q Consensus 181 g~g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~ 259 (403)
|+|..++++.+|+||+..++|..+|+||||+++++++|.||||+.....+||++|+|||||++|+.++++|+.+++ ..+
T Consensus 84 GtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nn 163 (177)
T KOG0879|consen 84 GTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNN 163 (177)
T ss_pred CceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 455
Q ss_pred cccceeee
Q psy443 260 KTSKKIVL 267 (403)
Q Consensus 260 ~p~~~I~L 267 (403)
+|.-.+.+
T Consensus 164 kPKl~v~i 171 (177)
T KOG0879|consen 164 KPKLPVVI 171 (177)
T ss_pred CCCCcEEE
Confidence 66666544
No 33
>KOG0882|consensus
Probab=100.00 E-value=1.1e-35 Score=291.59 Aligned_cols=148 Identities=46% Similarity=0.770 Sum_probs=139.9
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC-
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN- 196 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~- 196 (403)
-.+.+||+.|+|.|.||++.||+||+||-.-| +.|| |++..||||+++||||+|||.+ +|+||.++||..|+||.
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~g-~gtggesiwg~dfedefh 480 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPLG-DGTGGESIWGKDFEDEFH 480 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCCC-CCCCCcccccccchhhcC
Confidence 46889999999999999999999999999999 8999 9999999999999999999998 99999999999999996
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCcccceeeecc
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
..++|++|-+||||++|||+||||||||..+.|+||++|||||||+.||||+++|+++.+ ..++|..++.|..
T Consensus 481 ~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 481 PNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred cccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence 479999999999999999999999999999999999999999999999999999999986 4568888886654
No 34
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2e-34 Score=262.95 Aligned_cols=145 Identities=64% Similarity=1.049 Sum_probs=133.1
Q ss_pred EeeeeEEEEEcCCCChhhHHhHHHhhcC-------CCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443 124 WYRKGFKGRLRSDVVPKTAENFRALCTG-------EKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN 196 (403)
Q Consensus 124 T~~G~i~ieL~~d~aP~~~~nF~~L~~g-------~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~ 196 (403)
|+.|+|+||||.+.||++|+||++||+| +.++ |+++.||||+|++++||||+...++.++.+.++..+++|.
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDEN 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCcc
Confidence 3689999999999999999999999974 3557 9999999999999999999987678888888888899998
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS 269 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~ 269 (403)
..+.|+++|+|+|+++++++++|||||++.++|+||++|+|||||++|||||++|+..++..++|...|+|..
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~ 178 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD 178 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence 8899999999999999999999999999999999999999999999999999999998887778888876654
No 35
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.9e-34 Score=256.61 Aligned_cols=134 Identities=34% Similarity=0.503 Sum_probs=117.7
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS 342 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls 342 (403)
..|+|+.+.+|++++||++|| +.|| |+++.||||+|+||+||||+....+. ..++.++.+|.....|+++|+||
T Consensus 9 i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~v~ 82 (155)
T cd01920 9 IVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNTRGTIA 82 (155)
T ss_pred EEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCCceEEE
Confidence 345999999999999999999 7889 99999999999999999998753322 23456788887666678899999
Q ss_pred EecCC-CCCCcceEEEEecCCCCCCC-----CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443 343 MANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF 402 (403)
Q Consensus 343 ma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~ 402 (403)
||+.+ |++++|||||+++++|+||+ +|+|||+|+||||||++|+++++++ ++|+.+|+|.
T Consensus 83 ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~ 153 (155)
T cd01920 83 MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIE 153 (155)
T ss_pred ECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEE
Confidence 99975 89999999999999999995 7999999999999999999999964 5999999986
No 36
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.8e-34 Score=258.76 Aligned_cols=144 Identities=30% Similarity=0.520 Sum_probs=121.0
Q ss_pred eEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443 120 NAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL 199 (403)
Q Consensus 120 v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~ 199 (403)
|+|+|+.|+|+|+||++.||++|+||++|| +.+| |+++.||||+|+|++|||++..+.+. ..++..+.+|....
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~ 75 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNG 75 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCccccc
Confidence 679999999999999999999999999999 7899 99999999999999999997643322 12345677775444
Q ss_pred CCCccceeeecccC-CCCCcceeEEEeccCcCCC-------C-ceeEEEeEeecccccccccccCCCC-----Cccccee
Q psy443 200 KHTGPGILSMANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKI 265 (403)
Q Consensus 200 ~h~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld-------~-~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I 265 (403)
.++.+|+||||+.+ |++++|||||++.++++|| + +|+|||||++|||+|++|+.+.+.. ++|..+|
T Consensus 76 ~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v 155 (164)
T PRK10791 76 LKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDV 155 (164)
T ss_pred ccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCe
Confidence 45579999999875 8999999999999988776 3 6999999999999999999987643 5787777
Q ss_pred eecc
Q psy443 266 VLRS 269 (403)
Q Consensus 266 ~L~~ 269 (403)
.|..
T Consensus 156 ~I~~ 159 (164)
T PRK10791 156 IIES 159 (164)
T ss_pred EEEE
Confidence 5544
No 37
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.5e-34 Score=257.71 Aligned_cols=135 Identities=31% Similarity=0.533 Sum_probs=115.2
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIL 341 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~l 341 (403)
...|+|+.+.+|++++||++|| +.+| |+++.||||+|+|+|||||+..+.+. ..++.++.+|.....|+++|+|
T Consensus 10 ~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~~G~l 83 (164)
T PRK10791 10 DIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNTRGTL 83 (164)
T ss_pred cEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCCCcEE
Confidence 3456999999999999999999 7889 99999999999999999997643322 2245677777554445579999
Q ss_pred EEecCC-CCCCcceEEEEecCCCCCC-------C-CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEe
Q psy443 342 SMANAG-PNTNGSQFFITTVKTAWLD-------N-RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCF 402 (403)
Q Consensus 342 sma~~g-~~s~gSqFfItl~~~~~Ld-------~-~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~ 402 (403)
|||+.+ |++|+|||||++.++++|| + +|+|||||+||||||++|+.++++. ++|+.+|+|.
T Consensus 84 sma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 84 AMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred EECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 999985 9999999999999998886 3 7999999999999999999999964 6999999986
No 38
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.1e-34 Score=263.92 Aligned_cols=146 Identities=32% Similarity=0.496 Sum_probs=124.8
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~ 197 (403)
..|+|+|+.|+|+||||++.||++|+||++|| +.|| |+++.||||+|+||+|||++....+ + ..++.++.+|..
T Consensus 29 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~-~--~~~~~~~~~e~~ 102 (190)
T PRK10903 29 PHVLLTTSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ-Q--KKPNPPIKNEAD 102 (190)
T ss_pred cEEEEEeccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC-C--CCCCCcccCccc
Confidence 67999999999999999999999999999999 8899 9999999999999999999875321 1 223556777766
Q ss_pred ccCCCccceeeecccC-CCCCcceeEEEeccCcCCCC-----ceeEEEeEeecccccccccccCCCC-----Ccccceee
Q psy443 198 TLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIV 266 (403)
Q Consensus 198 ~~~h~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~-----~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~ 266 (403)
...|+++|+|+||+++ +++++|||||++.++++||. +|+|||+|++|||||++|+++++.. +.|..+|.
T Consensus 103 ~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 182 (190)
T PRK10903 103 NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 182 (190)
T ss_pred ccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence 6667789999999865 89999999999999999984 8999999999999999999987643 46666665
Q ss_pred ecc
Q psy443 267 LRS 269 (403)
Q Consensus 267 L~~ 269 (403)
|.+
T Consensus 183 I~~ 185 (190)
T PRK10903 183 ILS 185 (190)
T ss_pred EEE
Confidence 543
No 39
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.9e-34 Score=259.30 Aligned_cols=137 Identities=40% Similarity=0.689 Sum_probs=126.0
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCcE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPGI 340 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G~ 340 (403)
...|+|+.+.+|++++||+.|| +.++ |+++.||||+|+|++||||+.+ .+.++.++++.+|++|.. .++|+++|+
T Consensus 16 ~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~~-~g~g~~s~~g~~~~~E~~~~~~~~~~G~ 91 (171)
T cd01925 16 DIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEFHSRLRFNRRGL 91 (171)
T ss_pred cEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccCC-CCccCcccCCCccCcccccCcCCCCCcE
Confidence 4456999999999999999999 6788 9999999999999999999875 788889999999999876 578999999
Q ss_pred EEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443 341 LSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCF 402 (403)
Q Consensus 341 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~ 402 (403)
|+||+.++++++|||||+++++|+||++|+|||||+ ++|++|++|+.++++ +++|+.+|+|.
T Consensus 92 l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~ 155 (171)
T cd01925 92 VGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKIT 155 (171)
T ss_pred EEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEE
Confidence 999999999999999999999999999999999999 468889999999996 48999999986
No 40
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.1e-34 Score=262.81 Aligned_cols=136 Identities=33% Similarity=0.568 Sum_probs=118.5
Q ss_pred cceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEE
Q psy443 262 SKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIL 341 (403)
Q Consensus 262 ~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~l 341 (403)
...|+|+.+.+|++++||++|| +.|| |+++.||||+|+|++||||+....+ ...++.++.+|.....|+.+|+|
T Consensus 39 ~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l~~~~G~l 112 (190)
T PRK10903 39 NIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNTRGTI 112 (190)
T ss_pred cEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccCcCCCcEE
Confidence 3456999999999999999999 7899 9999999999999999999865322 12346678888766667889999
Q ss_pred EEecCC-CCCCcceEEEEecCCCCCCC-----CceEEEEEEecHHHHHHHHhCCCCC-----CCccccEEEeC
Q psy443 342 SMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVCFN 403 (403)
Q Consensus 342 sma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~vfG~VieG~dvl~~i~~~~t~~-----~~P~~~i~I~~ 403 (403)
+|||.+ |++|+|||||+++++++||+ +|+|||+|++|||||++|+.+++++ ++|+.+|+|.+
T Consensus 113 ama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 185 (190)
T PRK10903 113 AMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 185 (190)
T ss_pred EeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEE
Confidence 999865 99999999999999999994 8999999999999999999999864 69999999963
No 41
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.1e-34 Score=258.34 Aligned_cols=149 Identities=37% Similarity=0.615 Sum_probs=133.2
Q ss_pred ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443 117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN 196 (403)
Q Consensus 117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~ 196 (403)
+..|+|+|++|+|+||||.+.||++|+||++|| +++| |+++.||||+|+|++|||++.+ ++.++.++++..+++|.
T Consensus 5 ~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~~-~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 5 TGKVILKTTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEF 80 (171)
T ss_pred ccEEEEEEccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccCC-CCccCcccCCCccCccc
Confidence 467999999999999999999999999999999 7888 9999999999999999999876 78888888898999886
Q ss_pred C-ccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee-cccccccccccCC-CCCcccceeeecc
Q psy443 197 F-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE-GLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 197 ~-~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie-G~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
. .+.|+++|+|+||++++++++|||||++++.|+||++|+|||||++ +++++++|+.+.. ..++|..+++|..
T Consensus 81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~ 156 (171)
T cd01925 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITS 156 (171)
T ss_pred ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEE
Confidence 5 5778999999999999999999999999999999999999999983 5778899998875 4567777664443
No 42
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.3e-34 Score=256.01 Aligned_cols=140 Identities=33% Similarity=0.482 Sum_probs=119.7
Q ss_pred EEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCC
Q psy443 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKH 201 (403)
Q Consensus 122 ~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h 201 (403)
|+|+.|+|+||||++.||++|+||++|| +.|| |+++.||||+|+||+|||++....+. ..++..+.+|.....|
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~ 75 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLS 75 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCccccccc
Confidence 7899999999999999999999999999 8899 99999999999999999998763222 2234567777666666
Q ss_pred CccceeeecccC-CCCCcceeEEEeccCcCCCC-----ceeEEEeEeecccccccccccCCCC-----Ccccceeee
Q psy443 202 TGPGILSMANAG-PNTNGSQFFITTVKTAWLDN-----RHVVFGSVVEGLDVVKKLESMGSQS-----GKTSKKIVL 267 (403)
Q Consensus 202 ~~~G~ls~a~~~-~~~~~SqFfI~l~~~~~Ld~-----~~~VFGrVieG~dvl~~i~~~~t~~-----~~p~~~I~L 267 (403)
+++|+|+||+++ +++++|||||++.++++||. +|+|||+|++||+||++|+++++.. +.|..+|+|
T Consensus 76 ~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i 152 (155)
T cd01920 76 NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152 (155)
T ss_pred CCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEE
Confidence 789999999865 89999999999999999995 7999999999999999999988744 355555544
No 43
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.5e-34 Score=262.76 Aligned_cols=145 Identities=58% Similarity=0.966 Sum_probs=131.6
Q ss_pred eeeeEEEEEcCCCChhhHHhHHHhhcCCC---C--cccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCcc
Q psy443 125 YRKGFKGRLRSDVVPKTAENFRALCTGEK---G--FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTL 199 (403)
Q Consensus 125 ~~G~i~ieL~~d~aP~~~~nF~~L~~g~~---g--~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~ 199 (403)
+.|+|+||||.+.||++|+||++||+++. | .+|+++.||||+|+|+|||||+..+++.|+.+.++..+++|....
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~ 110 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIA 110 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccccc
Confidence 68999999999999999999999997532 2 249999999999999999999876688888888888999998889
Q ss_pred CCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEe-ecccccccccccCC-CCCcccceeeecc
Q psy443 200 KHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGS-QSGKTSKKIVLRS 269 (403)
Q Consensus 200 ~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVi-eG~dvl~~i~~~~t-~~~~p~~~I~L~~ 269 (403)
.|+++|+|+|+++++++++|||||++.++|+||++|+|||||+ +||+||++|+++++ ..++|...|.|..
T Consensus 111 ~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~ 182 (186)
T PLN03149 111 KHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISE 182 (186)
T ss_pred ccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 9999999999999999999999999999999999999999999 79999999999987 5678888876654
No 44
>KOG0865|consensus
Probab=100.00 E-value=1.9e-34 Score=256.21 Aligned_cols=148 Identities=72% Similarity=1.195 Sum_probs=139.7
Q ss_pred CCCCccccee--eeccccCCcchhhHHHhhcCCCCCccCCceEEe---ecCCeEEEeCcCCCCCCCCCcccCCCCCCCCC
Q psy443 256 SQSGKTSKKI--VLRSDVVPKTAENFRALCTGEKGFGFKDSTFHR---VIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN 330 (403)
Q Consensus 256 t~~~~p~~~I--~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~R---vi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~ 330 (403)
+...+|.+++ +|+.+..|++++||..||+|+++++|+++.||| .+++|++||||.+..+++||.++|++.|+||+
T Consensus 11 ~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den 90 (167)
T KOG0865|consen 11 AIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN 90 (167)
T ss_pred eecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence 3446666665 999999999999999999999999999999999 34479999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403 (403)
Q Consensus 331 ~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~ 403 (403)
+.++|..+|+|||||+|||+|+|||||++.+..|||++|+|||+|.|||+++++|+...+.+++|.++|.|.|
T Consensus 91 FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~d 163 (167)
T KOG0865|consen 91 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIAD 163 (167)
T ss_pred cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 45
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=6.2e-33 Score=261.77 Aligned_cols=148 Identities=33% Similarity=0.446 Sum_probs=128.4
Q ss_pred eeeEEEEe-----eeeEEEEEcCCCChhhHHhHHHhhcCCCCc--------ccCCCEEEeeeCC-eEEEeCcCCCCCCCC
Q psy443 118 LANAIHWY-----RKGFKGRLRSDVVPKTAENFRALCTGEKGF--------GFKDSTFHRVIPN-FMCQGGDFTNHNGTG 183 (403)
Q Consensus 118 ~~v~~~T~-----~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~--------~Y~~~~f~Rv~~~-~~iqgGd~~~~~g~g 183 (403)
..|.|+|+ .|+|+||||.+.||+||+||++||+|..++ +|+++.||||+++ ++||+||+.. +
T Consensus 53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~ 128 (249)
T PTZ00221 53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----F 128 (249)
T ss_pred CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----C
Confidence 45777766 567999999999999999999999875532 2999999999985 8999999864 2
Q ss_pred CcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC-CCCccc
Q psy443 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS-QSGKTS 262 (403)
Q Consensus 184 ~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t-~~~~p~ 262 (403)
+.+.+|..+++|...++|+++|+|+|+++++++++||||||+.++|+||++|+|||||++||+||++|++++. ..++|.
T Consensus 129 g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~ 208 (249)
T PTZ00221 129 NVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPL 208 (249)
T ss_pred CccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCC
Confidence 3355688899999999999999999999999999999999999999999999999999999999999999875 467888
Q ss_pred ceeeecc
Q psy443 263 KKIVLRS 269 (403)
Q Consensus 263 ~~I~L~~ 269 (403)
..|.|..
T Consensus 209 ~~V~I~~ 215 (249)
T PTZ00221 209 LPVTVSF 215 (249)
T ss_pred CCeEEEE
Confidence 7774444
No 46
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.2e-32 Score=240.59 Aligned_cols=136 Identities=57% Similarity=0.846 Sum_probs=122.7
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCCCCC-CCCCcEE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK-HTGPGIL 341 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~-h~~~G~l 341 (403)
..|+|+.+.+|++++||++|| +.++ |+++.||||+|+|++|+||+......+ +.++..+++|..... |+++|+|
T Consensus 9 i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~~~G~v 83 (146)
T cd00317 9 IVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTL 83 (146)
T ss_pred EEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcCCCcEE
Confidence 345999999999999999999 5667 999999999999999999987754332 456778888887665 8999999
Q ss_pred EEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 342 SMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 342 sma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
+|++.++++++|||||++.++|+||++|+|||||++|||+|++|+..+++ +++|+++|+|.+
T Consensus 84 ~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 84 SMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred EEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 99999999999999999999999999999999999999999999999997 699999999974
No 47
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.98 E-value=2.8e-32 Score=247.07 Aligned_cols=136 Identities=35% Similarity=0.539 Sum_probs=111.5
Q ss_pred CcccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCC--------------------CCC
Q psy443 259 GKTSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG--------------------TGG 318 (403)
Q Consensus 259 ~~p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g--------------------~gg 318 (403)
+.....|+|+.+.+|.+++||++|| +.+| |+++.||||+|+||+||||+..... ..+
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~ 81 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQK 81 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCC
Confidence 3344556999999999999999999 7899 9999999999999999999975311 123
Q ss_pred cccCCCCCC-----CCCCCCCCCCCcEEEEecCC--CCCCcceEEEEec-------CCCCCCCCceEEEEEEecHHHHHH
Q psy443 319 KSIYGNKFE-----DENFTLKHTGPGILSMANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDVVKK 384 (403)
Q Consensus 319 ~~~~g~~~~-----~e~~~~~h~~~G~lsma~~g--~~s~gSqFfItl~-------~~~~Ld~~~~vfG~VieG~dvl~~ 384 (403)
.++++..++ ++.....|+.+|+|||||.+ |++++|||||+++ ++|+||++|+|||+|+||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~ 161 (176)
T cd01924 82 QPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRE 161 (176)
T ss_pred CCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHh
Confidence 345555543 45567788899999999998 7999999999998 789999999999999999999999
Q ss_pred HHhCCCCCCCccccEEEe
Q psy443 385 LESMGSQSGKTSKKIVCF 402 (403)
Q Consensus 385 i~~~~t~~~~P~~~i~I~ 402 (403)
|+.. ..+..++|+
T Consensus 162 I~~g-----d~i~~~~~~ 174 (176)
T cd01924 162 LKVG-----DKIESARVV 174 (176)
T ss_pred hcCC-----CEEEEEEEe
Confidence 9753 335555553
No 48
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.98 E-value=2e-32 Score=248.14 Aligned_cols=128 Identities=34% Similarity=0.526 Sum_probs=110.2
Q ss_pred EEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCC-------------------
Q psy443 123 HWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG------------------- 183 (403)
Q Consensus 123 ~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g------------------- 183 (403)
.|++|+|+||||++.||++|+||++|| +.+| |+++.||||+|+||+||||+... +.+
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~p~e~~~~ 78 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTIPLEIKPE 78 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccccceeccc
Confidence 489999999999999999999999999 8999 99999999999999999998763 211
Q ss_pred --CcccCCCcc-----cCCCCccCCCccceeeecccC--CCCCcceeEEEec-------cCcCCCCceeEEEeEeecccc
Q psy443 184 --GKSIYGNKF-----EDENFTLKHTGPGILSMANAG--PNTNGSQFFITTV-------KTAWLDNRHVVFGSVVEGLDV 247 (403)
Q Consensus 184 --~~~~~~~~~-----~~e~~~~~h~~~G~ls~a~~~--~~~~~SqFfI~l~-------~~~~Ld~~~~VFGrVieG~dv 247 (403)
+.+.++..+ .++...+.|+++|+|+||+++ +++++|||||+++ ++|+||++|+|||||++||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dv 158 (176)
T cd01924 79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDI 158 (176)
T ss_pred CCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHH
Confidence 223344333 244566788889999999987 6999999999998 789999999999999999999
Q ss_pred ccccccc
Q psy443 248 VKKLESM 254 (403)
Q Consensus 248 l~~i~~~ 254 (403)
|++|+..
T Consensus 159 l~~I~~g 165 (176)
T cd01924 159 LRELKVG 165 (176)
T ss_pred HHhhcCC
Confidence 9999754
No 49
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.98 E-value=5.9e-32 Score=237.90 Aligned_cols=143 Identities=53% Similarity=0.806 Sum_probs=127.0
Q ss_pred EEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccC
Q psy443 121 AIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK 200 (403)
Q Consensus 121 ~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~ 200 (403)
.++|+.|+|+||||++.||++|+||++|| +.++ |+++.|||++|++++|+|++......+ +.++..+++|.....
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~ 75 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLK 75 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCc
Confidence 37899999999999999999999999999 7778 999999999999999999988743322 344677888877665
Q ss_pred -CCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCC-CCcccceeeec
Q psy443 201 -HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVLR 268 (403)
Q Consensus 201 -h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~-~~~p~~~I~L~ 268 (403)
|+++|+|+|++.++++++|||||++.+.++||++|+|||||++||++|++|+..++. .++|..+|.|.
T Consensus 76 ~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 76 YHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 888999999999999999999999999999999999999999999999999999874 77888887653
No 50
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.97 E-value=3e-30 Score=229.22 Aligned_cols=137 Identities=43% Similarity=0.713 Sum_probs=117.4
Q ss_pred ceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCC-cccCCCCCCCCCC-CCCCCCCcE
Q psy443 263 KKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYGNKFEDENF-TLKHTGPGI 340 (403)
Q Consensus 263 ~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg-~~~~g~~~~~e~~-~~~h~~~G~ 340 (403)
..|+|+.+.+|++++||++|| +.++ |+++.|||++|++++|+||+......+. ....+.++++|.. ...++++|+
T Consensus 12 i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~G~ 88 (155)
T PF00160_consen 12 IVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKHRRGL 88 (155)
T ss_dssp EEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSSSTTE
T ss_pred EEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccccccccccccccee
Confidence 344999999999999999999 5667 9999999999999999999876443211 1233446888874 334448999
Q ss_pred EEEecCC--CCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHHhCCCCCCCccccEEEeC
Q psy443 341 LSMANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403 (403)
Q Consensus 341 lsma~~g--~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~~~~t~~~~P~~~i~I~~ 403 (403)
|+|++.+ +++++|||||++.++|+||++|+|||+|++||++|++|+..++++ +|.++|+|.+
T Consensus 89 v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~ 152 (155)
T PF00160_consen 89 VSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISS 152 (155)
T ss_dssp EEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEE
T ss_pred eeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEE
Confidence 9999986 899999999999999999999999999999999999999999988 9999999974
No 51
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.96 E-value=7.2e-30 Score=226.76 Aligned_cols=146 Identities=41% Similarity=0.662 Sum_probs=123.0
Q ss_pred eEEEEe-eeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCC-cccCCCcccCCCC
Q psy443 120 NAIHWY-RKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG-KSIYGNKFEDENF 197 (403)
Q Consensus 120 v~~~T~-~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~-~~~~~~~~~~e~~ 197 (403)
++|+|+ +|+|+||||++.||++|+||++|| +.++ |+++.|||++|++++|+|++......+. ....+.++++|..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~ 78 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFN 78 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGB
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCccccccccc
Confidence 689996 999999999999999999999999 6777 9999999999999999999877433111 1223446778874
Q ss_pred -ccCCCccceeeecccC--CCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCcccceeeecc
Q psy443 198 -TLKHTGPGILSMANAG--PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRS 269 (403)
Q Consensus 198 -~~~h~~~G~ls~a~~~--~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~~~I~L~~ 269 (403)
...++++|+|+|++.+ +++++|||||++.+.++||++|+|||+|++||++|++|+..++.. +|..+|.|..
T Consensus 79 ~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~ 152 (155)
T PF00160_consen 79 PSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISS 152 (155)
T ss_dssp TTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEE
T ss_pred cccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEE
Confidence 3444479999999875 888999999999999999999999999999999999999987665 7777776543
No 52
>KOG0885|consensus
Probab=99.96 E-value=3.6e-30 Score=247.77 Aligned_cols=143 Identities=35% Similarity=0.625 Sum_probs=127.5
Q ss_pred cceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCC
Q psy443 116 QSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE 195 (403)
Q Consensus 116 ~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e 195 (403)
.+..|.+.|+.|+|.||||...||.+|+||++|| ..|| |+++.|||++|+|.+|||||++ +|+||.++||.+|.+|
T Consensus 11 ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~~-~gtGgesiyg~~fadE 86 (439)
T KOG0885|consen 11 TTGKVILKTTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPTG-TGTGGESIYGRPFADE 86 (439)
T ss_pred ccceEEEEeccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCCC-CCCCccccccccchhh
Confidence 3467999999999999999999999999999999 8899 9999999999999999999998 9999999999999999
Q ss_pred C-CccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEee-cccccccccccCCC-CCccc
Q psy443 196 N-FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE-GLDVVKKLESMGSQ-SGKTS 262 (403)
Q Consensus 196 ~-~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVie-G~dvl~~i~~~~t~-~~~p~ 262 (403)
. .++.+.++|+|+||+.+.+.||||||+||+++|+|+.+|++||+|+. -.-.+.+|..+... +.+|.
T Consensus 87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~ 156 (439)
T KOG0885|consen 87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV 156 (439)
T ss_pred cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence 5 57999999999999999999999999999999999999999999985 24445556555433 34443
No 53
>KOG0415|consensus
Probab=99.96 E-value=4.2e-30 Score=245.52 Aligned_cols=146 Identities=38% Similarity=0.564 Sum_probs=132.2
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcc-----
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF----- 192 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~----- 192 (403)
|.|+|+|++|+|+|+||.+.+|.+|.|||+|| +..| |+.|.||.|.++|.+|.|||++ +|.||.++|+.-+
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~lyG~q~r 76 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLYGEQAR 76 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCCC-CCCCcceeeeecccccch
Confidence 67999999999999999999999999999999 8888 9999999999999999999998 9999999987543
Q ss_pred --cCC-CCccCCCccceeeecccCCCCCcceeEEEeccC-cCCCCceeEEEeEeecccccccccccC-CCCCcccceeee
Q psy443 193 --EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKT-AWLDNRHVVFGSVVEGLDVVKKLESMG-SQSGKTSKKIVL 267 (403)
Q Consensus 193 --~~e-~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~-~~Ld~~~~VFGrVieG~dvl~~i~~~~-t~~~~p~~~I~L 267 (403)
+.| ...++|.+.|+|||++.+.|.+||||||||+++ ..||++|+|||+|+||||+|.+|+.+- ...+.|..+|.|
T Consensus 77 ffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI 156 (479)
T KOG0415|consen 77 FFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRI 156 (479)
T ss_pred hhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceee
Confidence 334 357999999999999999999999999999774 899999999999999999999998876 456688777743
No 54
>KOG0885|consensus
Probab=99.96 E-value=6e-30 Score=246.22 Aligned_cols=138 Identities=37% Similarity=0.666 Sum_probs=127.2
Q ss_pred ccceeeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCCCCC-CCCCCCCc
Q psy443 261 TSKKIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF-TLKHTGPG 339 (403)
Q Consensus 261 p~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~e~~-~~~h~~~G 339 (403)
....|+|-...||++|+||+.|| -.|| |+|+.|||++|+|.+|||||++ +|+||.+|||.+|.+|.. +++.++||
T Consensus 22 G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~~-~gtGgesiyg~~fadE~h~Rlrf~rrG 97 (439)
T KOG0885|consen 22 GDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPTG-TGTGGESIYGRPFADEFHPRLRFNRRG 97 (439)
T ss_pred CceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCCC-CCCCccccccccchhhcCcceeeeccc
Confidence 34566999999999999999999 6899 9999999999999999999988 999999999999999976 68999999
Q ss_pred EEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEE-ecHHHHHHHHhCCCC-CCCccccEEEe
Q psy443 340 ILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVKKLESMGSQ-SGKTSKKIVCF 402 (403)
Q Consensus 340 ~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vi-eG~dvl~~i~~~~t~-~~~P~~~i~I~ 402 (403)
+|+|||.+.+.||||||+||+++|+|+++|++||+|+ +-.-.+.+|..+.++ +.||..+-+|.
T Consensus 98 lvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~ 162 (439)
T KOG0885|consen 98 LVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIK 162 (439)
T ss_pred eeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCcccee
Confidence 9999999999999999999999999999999999999 467788889888887 58998887765
No 55
>KOG0865|consensus
Probab=99.95 E-value=1.1e-28 Score=219.41 Aligned_cols=154 Identities=68% Similarity=1.124 Sum_probs=142.9
Q ss_pred cccccccccccceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEe---eeCCeEEEeCcCCCCCCC
Q psy443 106 KFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHR---VIPNFMCQGGDFTNHNGT 182 (403)
Q Consensus 106 ~f~~~~~~~~~s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~R---v~~~~~iqgGd~~~~~g~ 182 (403)
+|+|..+.+. ++|++.++|+.|..|+|++||..||+|+++++|.+..||| .+++||+||||++..+++
T Consensus 6 vf~d~~~~~~---------p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngt 76 (167)
T KOG0865|consen 6 VFFDIAIDGE---------PLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGT 76 (167)
T ss_pred eeeeeeecCc---------cccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCc
Confidence 6777777765 8899999999999999999999999999999999999999 344799999999999999
Q ss_pred CCcccCCCcccCCCCccCCCccceeeecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCCCCCccc
Q psy443 183 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTS 262 (403)
Q Consensus 183 g~~~~~~~~~~~e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~~p~ 262 (403)
|+.+++++.|+||+..++|..+|.||||+.+||+++||||||.....+||++|+|||+|.+||+++++++..++..+++.
T Consensus 77 ggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~ 156 (167)
T KOG0865|consen 77 GGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTS 156 (167)
T ss_pred cceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred ceeeec
Q psy443 263 KKIVLR 268 (403)
Q Consensus 263 ~~I~L~ 268 (403)
.+|.+.
T Consensus 157 ~~i~i~ 162 (167)
T KOG0865|consen 157 KKITIA 162 (167)
T ss_pred ccEEEe
Confidence 766543
No 56
>KOG0415|consensus
Probab=99.95 E-value=3e-28 Score=232.90 Aligned_cols=135 Identities=41% Similarity=0.633 Sum_probs=123.3
Q ss_pred eeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCC-------CCCCCCC-CCCCC
Q psy443 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN-------KFEDENF-TLKHT 336 (403)
Q Consensus 265 I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~-------~~~~e~~-~~~h~ 336 (403)
|.|+...+|.+|.||++|| +..| |+.+.||.|.++|++|.|||++ .|.||.++|+. .|+.|.. .++|.
T Consensus 14 IDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~lyG~q~rffeaE~~p~l~Hs 89 (479)
T KOG0415|consen 14 IDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLYGEQARFFEAEFLPKLKHS 89 (479)
T ss_pred eeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCCC-CCCCcceeeeecccccchhhhhhhccccccc
Confidence 4899999999999999999 8888 9999999999999999999998 99999999863 4666764 79999
Q ss_pred CCcEEEEecCCCCCCcceEEEEecCC-CCCCCCceEEEEEEecHHHHHHHHhCCCC-CCCccccEEEeC
Q psy443 337 GPGILSMANAGPNTNGSQFFITTVKT-AWLDNRHVVFGSVVEGLDVVKKLESMGSQ-SGKTSKKIVCFN 403 (403)
Q Consensus 337 ~~G~lsma~~g~~s~gSqFfItl~~~-~~Ld~~~~vfG~VieG~dvl~~i~~~~t~-~~~P~~~i~I~~ 403 (403)
+.|+|||++.|.|-+||||||||+++ .+|||+|+|||+|.||||+|.+|+..-.+ +++|.++|+|.+
T Consensus 90 k~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~H 158 (479)
T KOG0415|consen 90 KMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKH 158 (479)
T ss_pred ccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeee
Confidence 99999999999999999999999876 89999999999999999999999876554 589999999963
No 57
>KOG4279|consensus
Probab=99.94 E-value=1.9e-27 Score=244.71 Aligned_cols=86 Identities=35% Similarity=0.594 Sum_probs=76.8
Q ss_pred ChHHhhhhcCCCCCCEEEeeceEeeeeeecccccchhhHHHHHHhhhhcceecccccccchhhhhhhhcC-CcchhHHHH
Q psy443 1 MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNK-NDDRERATQ 79 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~l~ 79 (403)
+++++||++++++|||||||||||||||++|+|+|++||+.||+|||||||+||++|||||+|+||++.. .+.....++
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999988887755 777777777
Q ss_pred HHHHHHH
Q psy443 80 MIEKALE 86 (403)
Q Consensus 80 ia~~~~~ 86 (403)
.+...+.
T Consensus 345 ~IgmkLn 351 (1226)
T KOG4279|consen 345 QIGMKLN 351 (1226)
T ss_pred HHHHHHH
Confidence 6654443
No 58
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=99.82 E-value=7.5e-22 Score=196.34 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=71.9
Q ss_pred ChHHhhhhcCCCCCCEEEeeceEeeeeeecccccchhhHHHHHHhhhhcceecccccccchhhhhhhhcCC-cchhHHHH
Q psy443 1 MIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKN-DDRERATQ 79 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~l~ 79 (403)
+|+++|++++++.|||||||||||||+|++|+++|++++|+||+||||||+++|++|+|||+|+||++... +.....++
T Consensus 204 il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 204 ILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999888887774 44433444
Q ss_pred HHH
Q psy443 80 MIE 82 (403)
Q Consensus 80 ia~ 82 (403)
.+.
T Consensus 284 ~i~ 286 (374)
T PF13281_consen 284 KIG 286 (374)
T ss_pred HHH
Confidence 444
No 59
>PRK00969 hypothetical protein; Provisional
Probab=99.39 E-value=6.5e-12 Score=127.44 Aligned_cols=226 Identities=17% Similarity=0.207 Sum_probs=160.6
Q ss_pred ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443 117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN 196 (403)
Q Consensus 117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~ 196 (403)
..+..+.|++|+|+|||- .++.+++.|++.. +. |.+...|+-.++-++.|--++. +..+.
T Consensus 50 ~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~y--k~---~e~~~i~W~s~~~vAfGp~~s~-------------l~p~~ 109 (508)
T PRK00969 50 TKKYRIKTTKGEIVIELT--EENESVDFWLENY--KE---FEGKSLRWTSRSAVAFGPFESD-------------LEPSR 109 (508)
T ss_pred cceEEEEccCceEEEEEc--cCcchhhHHHHhH--Hh---hcCCceEeccccceeEcccccC-------------ccccc
Confidence 367899999999999998 4667788888887 33 7899999998888776543322 22222
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCCCC--ceeEEEeEeecccccccccccCCCCC-cccc----------
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDN--RHVVFGSVVEGLDVVKKLESMGSQSG-KTSK---------- 263 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~Ld~--~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~---------- 263 (403)
... ...++.|.+.-++-+...+.+.|+..+...--+ .--+||+|+.|..+|+++.....+.. +|+.
T Consensus 110 ~~~-~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~I~sIEPVie~~e~~~~~~ 188 (508)
T PRK00969 110 EEY-EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDRIISIEPVIEWKETSDYLV 188 (508)
T ss_pred Ccc-eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCeEEEEeeeEEehhcccceE
Confidence 222 334899999999988888988888766321111 12799999999999999877543221 2211
Q ss_pred ----------------eeeecc-ccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCC
Q psy443 264 ----------------KIVLRS-DVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326 (403)
Q Consensus 264 ----------------~I~L~~-d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~ 326 (403)
.+++-- ..+|.++|||+.+. +.|. ++| |...+.-.+..+..|...
T Consensus 189 TtDl~~~LEdG~~IfTy~eve~~~~~p~s~EH~la~~--~~G~-------f~V---------d~~tstfI~d~~L~g~~~ 250 (508)
T PRK00969 189 TTDLSTVLEDGMKIFTYVEVELDPGAPKSVEHFLALL--EDGT-------FEV---------DFETSTFIADDRLQGLKI 250 (508)
T ss_pred EecCCccccCCCEEEEEEEEEEcCCCCchHHHHHHHH--hCCe-------EEE---------eeeecceEeeccccCccC
Confidence 112222 36999999999999 7776 555 333333344455666777
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386 (403)
Q Consensus 327 ~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~ 386 (403)
+.|++..+ ++|+|++.+.|.++. ..||...+.+. .-.|+|+|+|++|||+++--+
T Consensus 251 p~En~~~R--~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 251 PEENFEPR--RRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred CccccCcc--ccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence 77776544 479999999997765 69999988764 567999999999999987554
No 60
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=99.35 E-value=1.5e-11 Score=124.50 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=160.7
Q ss_pred ceeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCC
Q psy443 117 SLANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDEN 196 (403)
Q Consensus 117 s~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~ 196 (403)
..+..+.|++|+|+|+|-. ...+++.|++.+ +. |.+...|+..++-++.|--+.. ++...
T Consensus 46 ~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y--~~---~e~~~i~W~s~~~vAfGp~~sd-------------l~p~~ 105 (503)
T TIGR03268 46 TKEYLIKTTKGEVVIELTP--NTEAGKFWSEIY--KE---LEGKQIRWTTPQEVAFGPFPSD-------------LEPSR 105 (503)
T ss_pred cceEEEEccCceEEEEecC--CchHHHHHHHHH--Hh---hcCCceeecchhheeeCcccCC-------------ccccC
Confidence 3779999999999999983 567888888887 33 7888999998887775543221 22222
Q ss_pred CccCCCccceeeecccCCCCCcceeEEEeccCcCC---CCceeEEEeEeecccccccccccCCCCC-cccc---------
Q psy443 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWL---DNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSK--------- 263 (403)
Q Consensus 197 ~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~~L---d~~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~--------- 263 (403)
.. ..+.++.|.+.-++-+...+.+.|+..+.... ....-+||+|+.|..+|+++.....+.. +|+.
T Consensus 106 ~~-~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D~I~sIEPvie~~~~~~~~ 184 (503)
T TIGR03268 106 EP-SEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGDQIISIEPVIERKEIVDSA 184 (503)
T ss_pred Cc-ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCCeEEEEeeeeeehhcccce
Confidence 22 23448999999999888999998888664321 1245799999999999999876543221 2211
Q ss_pred -----------------eeeec-cccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCC
Q psy443 264 -----------------KIVLR-SDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 325 (403)
Q Consensus 264 -----------------~I~L~-~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~ 325 (403)
.+++- ...+|.++|||+.+. +.|. ++| |...+.-.+.....|..
T Consensus 185 ~TtDl~~~LEdG~~IfTy~evE~~~~~p~s~EH~la~~--~~G~-------~~V---------d~~tsTfi~d~~L~g~~ 246 (503)
T TIGR03268 185 TTTDLSTVLEDGDRIFTYVEVELDPNAPVSVEHFLALM--EDGT-------FRV---------DYRTSTFISDDSLRGLD 246 (503)
T ss_pred EEecCCccccCCCEEEEEEEEEEcCCCChhHHHHHHHH--hCCe-------EEE---------eeeecceEecccccCcc
Confidence 11222 356999999999999 7776 555 33333333445556667
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443 326 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386 (403)
Q Consensus 326 ~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~ 386 (403)
.+.|+...+ ++|+|++.+.|.+.. ..||...+.+. .-.|+|+|+|++|||+++--+
T Consensus 247 ~p~En~~~R--~rGtVTVRn~G~G~G--~VYIYredr~s-s~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 247 KPEENIEKR--RRGAVTVRNSGVGEG--RVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred CCccccCcc--cceeEEEEeeccCce--eEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence 777765433 479999999997765 69999888764 567999999999999987554
No 61
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.5e-07 Score=92.61 Aligned_cols=225 Identities=19% Similarity=0.276 Sum_probs=145.1
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCC
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENF 197 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~ 197 (403)
-+..|.|+.|+|.|+|-+. -.+..+|...| +. |.++.+|+..|.-++.|. +.. + ..+..+
T Consensus 51 d~~~IktttG~i~ielt~~--~~e~k~~~e~y--ke---l~~~~i~Wts~~eva~Gp-~~~-d---------le~s~e-- 110 (512)
T COG4070 51 DEYRIKTTTGEIRIELTDE--SVEGKRWAEHY--KE---LEGTYIRWTSPEEVAFGP-FEA-D---------LEPSRE-- 110 (512)
T ss_pred ceEEEEccCCcEEEEeccc--cchhHHHHHHH--Hh---ccCceEEecChhHccccc-ccc-c---------cccccc--
Confidence 3478899999999999763 24556777788 33 899999999998877543 221 0 111111
Q ss_pred ccCCCccceeeecccCCCCCcceeEEEeccCc-CCCCceeEEEeEeecccccccccccCCCCC-cccc------------
Q psy443 198 TLKHTGPGILSMANAGPNTNGSQFFITTVKTA-WLDNRHVVFGSVVEGLDVVKKLESMGSQSG-KTSK------------ 263 (403)
Q Consensus 198 ~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~-~Ld~~~~VFGrVieG~dvl~~i~~~~t~~~-~p~~------------ 263 (403)
-....+-.+-|..++-+...+.|.|+-.... ..--..-..|+|+.|-.+++++.+...+.. +|+.
T Consensus 111 -~~ef~~~dvvl~l~g~dpdethiiiskkr~~~~Yg~~~d~~G~Vv~Gr~lidrL~~gd~i~~iEPivE~k~~ve~~~tT 189 (512)
T COG4070 111 -TGEFEAFDVVLSLSGFDPDETHIIISKKRHVAEYGAPEDIHGRVVGGRNLIDRLSRGDPILSIEPIVERKQLVEKTCTT 189 (512)
T ss_pred -ccccccceEEEEccCCCCCcceEEEEecceeeEecCCccccceEecchhhhhHhccCCceeeeechhhhhhhhhheeec
Confidence 1122245566777777777788888654422 111111345899999999998876543211 2211
Q ss_pred ----------ee----ee-ccccCCcchhhHHHhhcCCCCCccCCceEEeecCCeEEEeCcCCCCCCCCCcccCCCCCCC
Q psy443 264 ----------KI----VL-RSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED 328 (403)
Q Consensus 264 ----------~I----~L-~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~f~iqgGd~~~~~g~gg~~~~g~~~~~ 328 (403)
+| ++ ++..+|+++++|+.|. +.|- .|| |.+.+.-.+..+....+.+.
T Consensus 190 dLd~~LEdgdrifTy~eve~s~nsP~saEH~lalm--edG~-------lri---------~~~tntfis~~~lq~~~~~~ 251 (512)
T COG4070 190 DLDTILEDGDRIFTYFEVELSRNSPKSAEHFLALM--EDGT-------LRI---------DVTTNTFISDDTLQEEKVPE 251 (512)
T ss_pred ccccccccCCEEEEEEEEEeCCCCchhHHHHHHHh--hcce-------EEE---------EEeccceeeccccccccCCh
Confidence 11 11 2334999999999999 7775 555 23222333334445566666
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEecHHHHHHHH
Q psy443 329 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386 (403)
Q Consensus 329 e~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~VieG~dvl~~i~ 386 (403)
|++..+ .||.++..|-|.++. .-||.-.+.+. .-.|.++|||++|||+++--+
T Consensus 252 en~d~R--erG~iTvRn~GvgeG--rvYIyRedR~s-s~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 252 ENFDLR--ERGAITVRNVGVGEG--RVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hhhhhh--hcceEEEEeeecccc--eEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence 766544 479999999997754 78998877654 456899999999999987554
No 62
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=98.39 E-value=2e-05 Score=80.62 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=126.8
Q ss_pred EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS 208 (403)
Q Consensus 129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls 208 (403)
+.+||.++ ||.++++|+.+. +.|. + .+-+...-|+ +.....+...+.|+ .....+|+|.
T Consensus 203 ~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~tsTfi------------~d~~L~g~~~p~En--~~~R~rGtVT 261 (503)
T TIGR03268 203 VEVELDPN-APVSVEHFLALM--EDGT-F---RVDYRTSTFI------------SDDSLRGLDKPEEN--IEKRRRGAVT 261 (503)
T ss_pred EEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeeeecceE------------ecccccCccCCccc--cCcccceeEE
Confidence 67787666 999999999999 5554 1 1111112222 22222344445553 4455699999
Q ss_pred ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CC----------------------------
Q psy443 209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QS---------------------------- 258 (403)
Q Consensus 209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~---------------------------- 258 (403)
+.+.|.+. -..||-..+-+ ..-.|+|+|+|+.||++++-...... ..
T Consensus 262 VRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~Gd~itv~t~Peri~llG~t~~eA~~~~~~~gIe~~ 338 (503)
T TIGR03268 262 VRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEGDRLSVETEPPRIDLVGLTQEEAEELLEELGIELE 338 (503)
T ss_pred EEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccCCCEEEEEeCchHheecCCCHHHHHHHHHhcCcEEe
Confidence 99887532 23666554433 33579999999999999875543310 00
Q ss_pred -------------Ccc---------------------cceeeeccccCCcchhhHHHhhcCCCCCccCC-ceEEeecCCe
Q psy443 259 -------------GKT---------------------SKKIVLRSDVVPKTAENFRALCTGEKGFGFKD-STFHRVIPNF 303 (403)
Q Consensus 259 -------------~~p---------------------~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g-~~f~Rvi~~f 303 (403)
+.| +..|+||.+.||.++.-|+++. |=... =-| ..+|=..++.
T Consensus 339 ~dG~~~dDaVVV~Q~P~~TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t-GL~~~-~VG~L~v~F~~~d~ 416 (503)
T TIGR03268 339 KEGVDGDDAVVVKQEPPYTLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT-GLKTK-PVGRLPVHFAFKEM 416 (503)
T ss_pred ecCCCCCCeEEEecCCchHHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc-CCccc-ccceeEEEEEeCCe
Confidence 011 1156999999999999999987 11100 011 2344444553
Q ss_pred EEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEe------cCC-CCCCCCceEEEEEE
Q psy443 304 MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITT------VKT-AWLDNRHVVFGSVV 376 (403)
Q Consensus 304 ~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl------~~~-~~Ld~~~~vfG~Vi 376 (403)
.+-=|+.. ++..+.+|+..-..-..|.|+|-|....-.| -.=|-+ +|+ ..+++.+.+ |+|+
T Consensus 417 ~mFk~~~~----------~~k~LiPEN~P~~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTNIi-G~Vv 484 (503)
T TIGR03268 417 IMFKGNKE----------LAKGLIPENTPEDKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTNII-GRVV 484 (503)
T ss_pred eEeccCch----------hccccCCCCCCCCccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcceE-EEec
Confidence 33222222 2233445555444455677777665422111 112222 333 234565554 9999
Q ss_pred ecHHHHHHHHhC
Q psy443 377 EGLDVVKKLESM 388 (403)
Q Consensus 377 eG~dvl~~i~~~ 388 (403)
+++|.|+++..-
T Consensus 485 ~~~e~Lk~~KeG 496 (503)
T TIGR03268 485 EGMERLKGLKEG 496 (503)
T ss_pred CChhHhcccccC
Confidence 999999988764
No 63
>PRK00969 hypothetical protein; Provisional
Probab=98.36 E-value=1.4e-05 Score=81.84 Aligned_cols=222 Identities=21% Similarity=0.285 Sum_probs=127.6
Q ss_pred EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS 208 (403)
Q Consensus 129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls 208 (403)
+.+||.++ ||.++++|+.+. +.|. + .+-+....|+. ..+..+...+.|+ ....++|+|.
T Consensus 206 ~eve~~~~-~p~s~EH~la~~--~~G~-f---~Vd~~tstfI~------------d~~L~g~~~p~En--~~~R~~GtVT 264 (508)
T PRK00969 206 VEVELDPG-APKSVEHFLALL--EDGT-F---EVDFETSTFIA------------DDRLQGLKIPEEN--FEPRRRGTVT 264 (508)
T ss_pred EEEEEcCC-CCchHHHHHHHH--hCCe-E---EEeeeecceEe------------eccccCccCCccc--cCccccceEE
Confidence 67788766 999999999999 5554 1 11111112222 2222344445553 4455699999
Q ss_pred ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccccCC--CCCc--------------------------
Q psy443 209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS--QSGK-------------------------- 260 (403)
Q Consensus 209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~~~t--~~~~-------------------------- 260 (403)
+.+.|.+. -..||-..+-+ -.-.|+|+|+|+.||++++-...... ....
T Consensus 265 VRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~Gd~itv~t~Peri~llG~t~~eA~~~~~~~gIel~ 341 (508)
T PRK00969 265 VRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKEGDRITVKTVPERIDLLGLTLKEAEELLEKLGIELE 341 (508)
T ss_pred EEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccCCCEEEEEeCchHheecCCCHHHHHHHHHhCCcEEE
Confidence 99887532 23667654433 33579999999999999876544311 0000
Q ss_pred ---------------c---------------------cceeeeccccCCcchhhHHHhhcCCCCCccCC-ceEEeecCCe
Q psy443 261 ---------------T---------------------SKKIVLRSDVVPKTAENFRALCTGEKGFGFKD-STFHRVIPNF 303 (403)
Q Consensus 261 ---------------p---------------------~~~I~L~~d~aP~t~enF~~L~~g~~g~~Y~g-~~f~Rvi~~f 303 (403)
| +..|+||.+.||.++.-|+++. | --..=-| ..+|=..++.
T Consensus 342 ~eg~~~ddaVVV~Q~P~~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t-G-L~~~~VG~L~v~F~~~d~ 419 (508)
T PRK00969 342 KEGYDGDDAVVVEQTPETTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT-G-LKTKPVGKLPVYFKYEDT 419 (508)
T ss_pred ecCCCCCCcEEEecCCchHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc-C-CcccccceeEEEEEeCCe
Confidence 0 1156999999999999999987 1 1000011 2344444554
Q ss_pred EEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEEEecCCCCCCcceEEEEe------cCC-CCCCCCceEEEEEE
Q psy443 304 MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITT------VKT-AWLDNRHVVFGSVV 376 (403)
Q Consensus 304 ~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~s~gSqFfItl------~~~-~~Ld~~~~vfG~Vi 376 (403)
.+--|+.. ++..+.+||..-.....|.|+|-|....-.| -.=|-+ +|+ ..+++.+ ++|||+
T Consensus 420 ~lFk~~~~----------~~k~liPEN~P~~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTN-IIGrVv 487 (508)
T PRK00969 420 YLFKGNIE----------YAKGLLPENTPEDKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTN-IIGRVV 487 (508)
T ss_pred EEEccChh----------hccccCCCCCCCCccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCce-eEEEec
Confidence 33323322 2333445665545555677777665422111 111222 333 2345555 459999
Q ss_pred ecHHHHHHHHhCC
Q psy443 377 EGLDVVKKLESMG 389 (403)
Q Consensus 377 eG~dvl~~i~~~~ 389 (403)
++|-|+++..-.
T Consensus 488 -~~e~Lk~lKeGd 499 (508)
T PRK00969 488 -NLEKLKKLKEGD 499 (508)
T ss_pred -ChHHhcccccCC
Confidence 999999987643
No 64
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00015 Score=71.97 Aligned_cols=101 Identities=29% Similarity=0.464 Sum_probs=61.5
Q ss_pred EEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccceee
Q psy443 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS 208 (403)
Q Consensus 129 i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G~ls 208 (403)
+.+||-++ +|+++++|+.|. +.|- + =-....|-.+ +..+....+.+.++..+ ..+|+++
T Consensus 205 ~eve~s~n-sP~saEH~lalm--edG~-l----ri~~~tntfi-----------s~~~lq~~~~~~en~d~--RerG~iT 263 (512)
T COG4070 205 FEVELSRN-SPKSAEHFLALM--EDGT-L----RIDVTTNTFI-----------SDDTLQEEKVPEENFDL--RERGAIT 263 (512)
T ss_pred EEEEeCCC-CchhHHHHHHHh--hcce-E----EEEEecccee-----------eccccccccCChhhhhh--hhcceEE
Confidence 77888776 999999999999 5553 1 1111111111 11222234455554443 4589999
Q ss_pred ecccCCCCCcceeEEEeccCcCCCCceeEEEeEeecccccccccc
Q psy443 209 MANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLES 253 (403)
Q Consensus 209 ~a~~~~~~~~SqFfI~l~~~~~Ld~~~~VFGrVieG~dvl~~i~~ 253 (403)
..+.+-++ -.-||-..+-+ -.-.|.|.|||++||++++-...
T Consensus 264 vRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 264 VRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 98876432 23566554422 22378999999999999876543
No 65
>KOG4279|consensus
Probab=95.09 E-value=0.013 Score=62.89 Aligned_cols=54 Identities=44% Similarity=0.778 Sum_probs=48.9
Q ss_pred hhhcCCcchhHHHHHHHHHHHhhhccCCcchhccccccccccccccccccccee
Q psy443 66 VIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLA 119 (403)
Q Consensus 66 ~~~~~~~~~e~~l~ia~~~~~~~~~~~p~~~c~~~~v~~~~f~~~~~~~~~s~~ 119 (403)
=-++++++|+.++..+-+.++...+.+|||||+++|+|||.|.++...+.+|..
T Consensus 251 NRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~ 304 (1226)
T KOG4279|consen 251 NRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLN 304 (1226)
T ss_pred cccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHH
Confidence 356789999999999999999999999999999999999999999998886633
No 66
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.29 E-value=0.029 Score=56.82 Aligned_cols=53 Identities=49% Similarity=0.733 Sum_probs=45.6
Q ss_pred hhhhhh-cCCcchhHHHHHHHHHHHhhhccCCcchhcccccccccccccccccc
Q psy443 63 EVMVIR-NKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDK 115 (403)
Q Consensus 63 ~~~~~~-~~~~~~e~~l~ia~~~~~~~~~~~p~~~c~~~~v~~~~f~~~~~~~~ 115 (403)
|.-|.+ +++++++.+++++.+++...+..+|||+|+++++||+.|.+....+.
T Consensus 186 afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~ 239 (374)
T PF13281_consen 186 AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDR 239 (374)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccch
Confidence 444444 66889999999999999999999999999999999999998766555
No 67
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=88.11 E-value=0.63 Score=40.96 Aligned_cols=106 Identities=23% Similarity=0.192 Sum_probs=52.8
Q ss_pred eEEEEEcCCCChhhHHhHHHhhcCCCCcccCCCEEEeeeCCe--EEEeCcCCCCCCCCCcccCCCcccCCCCccCCCccc
Q psy443 128 GFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNF--MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPG 205 (403)
Q Consensus 128 ~i~ieL~~d~aP~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~--~iqgGd~~~~~g~g~~~~~~~~~~~e~~~~~h~~~G 205 (403)
.++.+|..|.||+||+.|.++- = |.+..+|-...+. ++.-+++.. .....|+...... +|
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L-----P-~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~~P~-pG 70 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL-----P-LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTVTPI-PG 70 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEESS---TT
T ss_pred EEEEEEcccCChHHHHHHHHhC-----C-CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcccCC-CC
Confidence 4788999999999999999987 1 6677777555443 333344321 1123444444343 78
Q ss_pred eeeec---ccCCC--CC-cceeEEEeccCcCC---CCc---eeEEEeEeecccccccc
Q psy443 206 ILSMA---NAGPN--TN-GSQFFITTVKTAWL---DNR---HVVFGSVVEGLDVVKKL 251 (403)
Q Consensus 206 ~ls~a---~~~~~--~~-~SqFfI~l~~~~~L---d~~---~~VFGrVieG~dvl~~i 251 (403)
-|.+. ....+ .. =++.-|.++....+ |.. -.+|++|++|.+-+.++
T Consensus 71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~ 128 (147)
T PF12903_consen 71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEA 128 (147)
T ss_dssp EEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHH
T ss_pred cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHH
Confidence 77776 11111 11 13333444333221 122 27999999998865554
No 68
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=63.62 E-value=58 Score=27.51 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=54.6
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHHhhc--CCCCcccCCCEEEeeeCCeEEEeCcCCCCCCCCCcccCCCccc-C
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRALCT--GEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFE-D 194 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~L~~--g~~g~~Y~~~~f~Rv~~~~~iqgGd~~~~~g~g~~~~~~~~~~-~ 194 (403)
|.+.++-....+.++|+.. .|++.|++..- +...- |-+ .++ ..- + ...+ +
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~-~g~-E~y-------~~~--p-------------~~l~~~ 53 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMND-WGN-EKY-------FSL--P-------------LKLPTE 53 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEE-CTT-EEE-------EE---S------------------S
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHH-CCc-eEE-------EeC--C-------------CCCCcc
Confidence 4556666677899999877 78888888751 11111 211 111 110 0 0111 1
Q ss_pred CCCccCCCccceeeecccCCCCCcceeEEEeccCc-------CCCCceeEEEeEeecccccccccc
Q psy443 195 ENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTA-------WLDNRHVVFGSVVEGLDVVKKLES 253 (403)
Q Consensus 195 e~~~~~h~~~G~ls~a~~~~~~~~SqFfI~l~~~~-------~Ld~~~~VFGrVieG~dvl~~i~~ 253 (403)
+... .....|.|+.-.++.+ |.|-+++.| .+-....++|||..|.+.+.++..
T Consensus 54 ~~~~-~~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 54 ENPR-SSVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp SSEE-SSB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCcc-ccccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 1111 2335788888655543 777777764 344567999999999988887754
No 69
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=60.19 E-value=3.6 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=17.1
Q ss_pred chhhHHHHHHhhhhcceeccc
Q psy443 35 DKQSLANAIHWYRKGFKYKVS 55 (403)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ 55 (403)
..+..++|+.+|+|+.+++|+
T Consensus 13 ~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 13 QLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT
T ss_pred HhCCHHHHHHHHHHHHHHCcC
Confidence 456678999999999999885
No 70
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=58.24 E-value=25 Score=31.08 Aligned_cols=104 Identities=21% Similarity=0.159 Sum_probs=52.4
Q ss_pred eeeccccCCcchhhHHHhhcCCCCCccCCceEEeecCC--eEEEeCcCCCCCCCCCcccCCCCCCCCCCCCCCCCCcEEE
Q psy443 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPN--FMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILS 342 (403)
Q Consensus 265 I~L~~d~aP~t~enF~~L~~g~~g~~Y~g~~f~Rvi~~--f~iqgGd~~~~~g~gg~~~~g~~~~~e~~~~~h~~~G~ls 342 (403)
.+|..+.+|+||+.|.++- . |++..+|-...+ .|+.-+++.. .....||... +..+|-|.
T Consensus 12 A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~-~P~pGdi~ 73 (147)
T PF12903_consen 12 ARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTV-TPIPGDIL 73 (147)
T ss_dssp EEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEES-S--TTEEE
T ss_pred EEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcc-cCCCCcEE
Confidence 3899999999999999987 2 677777776544 3555555331 1112244332 33367666
Q ss_pred Ee---cCCCC--CC-cceEEEEecCCCCCC-CC-----ceEEEEEEecHHHHHHHH
Q psy443 343 MA---NAGPN--TN-GSQFFITTVKTAWLD-NR-----HVVFGSVVEGLDVVKKLE 386 (403)
Q Consensus 343 ma---~~g~~--s~-gSqFfItl~~~~~Ld-~~-----~~vfG~VieG~dvl~~i~ 386 (403)
+- .+..+ .. =|..=|.++-..-+- ++ -.+|++|++|.|-|.++-
T Consensus 74 ~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~ 129 (147)
T PF12903_consen 74 LYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEAC 129 (147)
T ss_dssp EE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHH
T ss_pred EEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHH
Confidence 65 11111 11 134444444332211 11 468999999999887774
No 71
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.18 E-value=8 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=13.5
Q ss_pred chhhHHHHHHhhhhcce
Q psy443 35 DKQSLANAIHWYRKGFK 51 (403)
Q Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (403)
..+..++|++||+||-+
T Consensus 20 ~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 20 VPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHH
Confidence 44568999999999854
No 72
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=44.36 E-value=22 Score=29.34 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.0
Q ss_pred eeeEEEEeeeeEEEEEcCCCChhhHHhHHH
Q psy443 118 LANAIHWYRKGFKGRLRSDVVPKTAENFRA 147 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP~~~~nF~~ 147 (403)
|++.+.-.-|.-++||+.+. |.++++...
T Consensus 4 MRiri~fEsg~c~~eL~ee~-pE~vr~i~d 32 (126)
T COG2164 4 MRIRITFESGHCTGELDEEN-PESVRRIYD 32 (126)
T ss_pred EEEEEEEecceEEEEccccC-hHHHHHHHH
Confidence 66666666699999999887 999987643
No 73
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=37.12 E-value=15 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.683 Sum_probs=12.6
Q ss_pred hhhHHHHHHhhhhcce
Q psy443 36 KQSLANAIHWYRKGFK 51 (403)
Q Consensus 36 ~~~~~~~~~~~~~~~~ 51 (403)
.+...+|++||+||=+
T Consensus 18 ~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 18 KKDLEKALEYYKKAAE 33 (36)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 4567899999999854
No 74
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=36.87 E-value=22 Score=20.07 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.1
Q ss_pred chhhHHHHHHhhhhcceeccc
Q psy443 35 DKQSLANAIHWYRKGFKYKVS 55 (403)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ 55 (403)
..+..++|+.||+++.+++|+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 13 KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHhhHHHHHHHHHHHHccCCC
Confidence 356678999999999988875
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=35.69 E-value=23 Score=25.57 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=32.8
Q ss_pred hhhHHHHHHhhhhcceeccc-ccccchhhhhhhhcCCcchhHHHHHHHHHHHhhhccCCc
Q psy443 36 KQSLANAIHWYRKGFKYKVS-LSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPD 94 (403)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~ia~~~~~~~~~~~p~ 94 (403)
....++|+..|.++++..|. .-.-++++.+++... +.+.+.+ .++.+....|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~----~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--QYDEAEE----LLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHH----HHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHH----HHHHHHHHCcC
Confidence 45678999999999999984 444455566666554 3444443 44444444444
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=33.08 E-value=31 Score=25.00 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=32.9
Q ss_pred cchhhHHHHHHhhhhcceecccccccchh-hhhhhhcCCcchhHHHHHHHHH
Q psy443 34 KDKQSLANAIHWYRKGFKYKVSLSTSGNI-EVMVIRNKNDDRERATQMIEKA 84 (403)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~l~ia~~~ 84 (403)
...+..++|+..|.|+.+++|+.....+. ++.+..-.+ +-+.+++....+
T Consensus 14 ~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~a 64 (69)
T PF13414_consen 14 FQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-DYEEAIEDFEKA 64 (69)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHHHH
Confidence 34667899999999999999987665554 444444331 345555555444
No 77
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=32.38 E-value=14 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHhhhhcceeccc
Q psy443 33 YKDKQSLANAIHWYRKGFKYKVS 55 (403)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (403)
+......|+|+.+|+++.+..|.
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcC
Confidence 44566789999999999999885
No 78
>KOG1127|consensus
Probab=29.23 E-value=8.7 Score=43.45 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=48.6
Q ss_pred EEEeeceEeeeeeecccccchhhHHHHHHhhhhcceecccccccchhhhhhhhcCCcchhHHHHHHHHHHHhhhccCCcc
Q psy443 16 MLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDM 95 (403)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ia~~~~~~~~~~~p~~ 95 (403)
.||-.|.||+|.. |+ ..|-+=|+||||++|+.+-..--++=+-+..+. -+.+..| .-..-+++|..
T Consensus 494 af~~LG~iYrd~~------Dm---~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~-we~a~~I----~l~~~qka~a~ 559 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD------DM---KRAKKCFDKAFELDATDAEAAAASADTYAEEST-WEEAFEI----CLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHHHHHHHH------HH---HHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc-HHHHHHH----HHHHhhhchHH
Confidence 5788999999864 33 345557999999999998877665555554443 4455544 22333556776
Q ss_pred hhcccccc
Q psy443 96 LCLCGRIY 103 (403)
Q Consensus 96 ~c~~~~v~ 103 (403)
.|.+.++.
T Consensus 560 ~~k~nW~~ 567 (1238)
T KOG1127|consen 560 ACKENWVQ 567 (1238)
T ss_pred HHHhhhhh
Confidence 66665555
No 79
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=27.83 E-value=39 Score=34.23 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCcEEEEecCCCCCCcceEEEEecCCCCCCCCceEEEEEEe-cHHHHHHHHh
Q psy443 336 TGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE-GLDVVKKLES 387 (403)
Q Consensus 336 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~vfG~Vie-G~dvl~~i~~ 387 (403)
-.+|.|.+.|.......-+.-|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 34899999999766666689999999997 999999999995 6788887764
No 80
>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C). Proteins in this uncharacterised family are described as transmembrane proteins.
Probab=27.78 E-value=36 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=22.9
Q ss_pred ChHHhhhhcCCCCCCEEEeeceEeeeeeec
Q psy443 1 MIEKALETQENNIPDMLCLCGRIYKDKFVE 30 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (403)
+|+++++..+ |+|.++--|||.|---+..
T Consensus 11 lll~~l~~~~-~~pk~lG~CG~~~v~E~~~ 39 (188)
T PF12260_consen 11 LLLQLLQGSE-PFPKLLGSCGRFYVVEYVG 39 (188)
T ss_pred HHHHHcCCCC-CCCCeeeECCCEEEEEeec
Confidence 3677788877 9999999999999654444
No 81
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=24.41 E-value=89 Score=26.38 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCcEEEEecCCCCCCcceEEEEecCCC-------CCCCCceEEEEEEecHHHHHHHHh
Q psy443 336 TGPGILSMANAGPNTNGSQFFITTVKTA-------WLDNRHVVFGSVVEGLDVVKKLES 387 (403)
Q Consensus 336 ~~~G~lsma~~g~~s~gSqFfItl~~~~-------~Ld~~~~vfG~VieG~dvl~~i~~ 387 (403)
...|-|+.-..+. -|.|-+++.| .+-....++|||+.|.+.++++..
T Consensus 60 ~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 3468888765543 3888888886 345668999999999999888754
No 82
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=23.59 E-value=3.4e+02 Score=23.40 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=37.0
Q ss_pred eeeEEEEeeeeEEEEEcCCCCh---------hhHHhHHHhhcCCCCcccCCCEEEeeeCCe
Q psy443 118 LANAIHWYRKGFKGRLRSDVVP---------KTAENFRALCTGEKGFGFKDSTFHRVIPNF 169 (403)
Q Consensus 118 ~~v~~~T~~G~i~ieL~~d~aP---------~~~~nF~~L~~g~~g~~Y~~~~f~Rv~~~~ 169 (403)
..+.++|..|++.+....+..| ++++.|++.. ++-..-+-+.|+-++++.
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L--~kyI~veeStFylvvrd~ 62 (130)
T PF06138_consen 4 VNIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVL--KKYIDVEESTFYLVVRDK 62 (130)
T ss_pred eEEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEecC
Confidence 5678999999998888755432 3688999988 553334778899998884
No 83
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=21.80 E-value=30 Score=21.39 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=17.1
Q ss_pred cchhhHHHHHHhhhhcceeccc
Q psy443 34 KDKQSLANAIHWYRKGFKYKVS 55 (403)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (403)
......++|+.-|++|.+++|+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 12 FQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHhCCchHHHHHHHHHHHHCcC
Confidence 3456678999999999999885
Done!