RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy443
(403 letters)
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 281 bits (721), Expect = 5e-95
Identities = 112/149 (75%), Positives = 126/149 (84%), Gaps = 7/149 (4%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFT 311
G+ + +IV L +DVVPKTAENFRALCTGEKG FG+K STFHRVIP+FM QGGDFT
Sbjct: 11 GEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFT 70
Query: 312 NHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
NGTGGKSIYG KF DENF LKHTGPG+LSMANAGPNTNGSQFFITTVKT WLD +HVV
Sbjct: 71 RGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVV 130
Query: 372 FGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
FG VVEG+DVVKK+E++GS +GK KK+V
Sbjct: 131 FGKVVEGMDVVKKIENVGSGNGKPKKKVV 159
Score = 279 bits (717), Expect = 2e-94
Identities = 109/140 (77%), Positives = 120/140 (85%), Gaps = 5/140 (3%)
Query: 132 RLRSDVVPKTAENFRALCTGEKG-----FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
L +DVVPKTAENFRALCTGEKG FG+K STFHRVIP+FM QGGDFT NGTGGKS
Sbjct: 20 ELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKS 79
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
IYG KF DENF LKHTGPG+LSMANAGPNTNGSQFFITTVKT WLD +HVVFG VVEG+D
Sbjct: 80 IYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMD 139
Query: 247 VVKKLESMGSQSGKTSKKIV 266
VVKK+E++GS +GK KK+V
Sbjct: 140 VVKKIENVGSGNGKPKKKVV 159
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 232 bits (593), Expect = 1e-75
Identities = 96/153 (62%), Positives = 112/153 (73%), Gaps = 8/153 (5%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDF 310
+ +IV L SDV PKTAENFRALC G+ K +K S FHR+IP FMCQGGD
Sbjct: 26 NAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDI 85
Query: 311 TNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
TNHNGTGG+SIYG KF DENF LKH PG+LSMANAGPNTNGSQFFITTV WLD +HV
Sbjct: 86 TNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHV 145
Query: 371 VFGSVVEGLDVVKKLESMGSQSGKTSKKIVCFN 403
VFG V+EG++VV+ +E G+QSG K +V +
Sbjct: 146 VFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTD 178
Score = 231 bits (591), Expect = 3e-75
Identities = 94/141 (66%), Positives = 108/141 (76%), Gaps = 6/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGE------KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
L SDV PKTAENFRALC G+ K +K S FHR+IP FMCQGGD TNHNGTGG+S
Sbjct: 36 LFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGES 95
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
IYG KF DENF LKH PG+LSMANAGPNTNGSQFFITTV WLD +HVVFG V+EG++
Sbjct: 96 IYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGME 155
Query: 247 VVKKLESMGSQSGKTSKKIVL 267
VV+ +E G+QSG K +V+
Sbjct: 156 VVRAMEKEGTQSGYPKKPVVV 176
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 190 bits (483), Expect = 5e-59
Identities = 86/145 (59%), Positives = 106/145 (73%), Gaps = 9/145 (6%)
Query: 264 KIVLRSDVVPKTAENFRALCTGE---KGF--GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
K+ L +D+ PKTAENFR CTGE G G+K FHRVI +FM QGGDF +GTG
Sbjct: 36 KMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-E 377
SIYG+KFEDENF KHTGPG+LSMAN+GPNTNG QFFIT K WLDN+HVVFG V+ +
Sbjct: 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGD 155
Query: 378 GLDVVKKLESMGSQSGKTSK-KIVC 401
GL VV+K+E++ +G ++ K+ C
Sbjct: 156 GLLVVRKIENV--ATGPNNRPKLAC 178
Score = 189 bits (481), Expect = 9e-59
Identities = 84/140 (60%), Positives = 100/140 (71%), Gaps = 6/140 (4%)
Query: 130 KGRLRSDVVPKTAENFRALCTGE---KGF--GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
K L +D+ PKTAENFR CTGE G G+K FHRVI +FM QGGDF +GTG
Sbjct: 36 KMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-E 243
SIYG+KFEDENF KHTGPG+LSMAN+GPNTNG QFFIT K WLDN+HVVFG V+ +
Sbjct: 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGD 155
Query: 244 GLDVVKKLESMGSQSGKTSK 263
GL VV+K+E++ + K
Sbjct: 156 GLLVVRKIENVATGPNNRPK 175
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 174 bits (443), Expect = 2e-53
Identities = 76/137 (55%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L D PKT ENF +L G + +TFHRVIP FM QGGD T G G S G
Sbjct: 11 IELYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGTGG--GGSGPGY 65
Query: 325 KFEDENFTLK-HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
KF DENF LK H G LSMANAGPNTNGSQFFITT T LD +H VFG VVEG+DVV
Sbjct: 66 KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVD 125
Query: 384 KLESMGSQSGKTSKKIV 400
K+E + K V
Sbjct: 126 KIERGDTDENGRPIKPV 142
Score = 173 bits (441), Expect = 3e-53
Identities = 77/139 (55%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L D PKT ENF +L G + +TFHRVIP FM QGGD T G G S G KF
Sbjct: 13 LYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGTGG--GGSGPGYKF 67
Query: 193 EDENFTLK-HTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
DENF LK H G LSMANAGPNTNGSQFFITT T LD +H VFG VVEG+DVV K+
Sbjct: 68 PDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKI 127
Query: 252 ESMGSQSGKTSKKIVLRSD 270
E + K V SD
Sbjct: 128 ERGDTDENGRPIKPVTISD 146
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 174 bits (443), Expect = 2e-53
Identities = 65/127 (51%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I L D PKT NF L +GF + + FHRVIP FM QGGD T +GTGG
Sbjct: 12 TIELYPDKAPKTVANFLQLVK--EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP-- 66
Query: 324 NKFEDENFTLKH--TGPGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
F+DENF L G LSMA AG PN+NGSQFFIT V +LD ++ VFG VVEG+D
Sbjct: 67 -PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD 125
Query: 381 VVKKLES 387
VV K+++
Sbjct: 126 VVDKIKN 132
Score = 171 bits (436), Expect = 2e-52
Identities = 64/124 (51%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L D PKT NF L +GF + + FHRVIP FM QGGD T +GTGG F
Sbjct: 15 LYPDKAPKTVANFLQLVK--EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP---PF 68
Query: 193 EDENFTLKH--TGPGILSMANAG-PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 249
+DENF L G LSMA AG PN+NGSQFFIT V +LD ++ VFG VVEG+DVV
Sbjct: 69 KDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVD 128
Query: 250 KLES 253
K+++
Sbjct: 129 KIKN 132
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 166 bits (423), Expect = 2e-50
Identities = 62/137 (45%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I L D PKT ENF +LC +KGF + + FHRVIP FM QGGD T G +SI
Sbjct: 12 VIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGDPTGPGTGGKRSI-- 66
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
DE + G LSMA +GPN+ GSQFFIT LD + VFG VVEG+DVV+
Sbjct: 67 ---PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVE 123
Query: 384 KLESMGSQSGKTSKKIV 400
K+E + + + K +
Sbjct: 124 KIEKVETDGDRPLKDVK 140
Score = 165 bits (420), Expect = 4e-50
Identities = 62/138 (44%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L D PKT ENF +LC +KGF + + FHRVIP FM QGGD T G +SI
Sbjct: 14 ELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGDPTGPGTGGKRSI---- 66
Query: 192 FEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
DE + G LSMA +GPN+ GSQFFIT LD + VFG VVEG+DVV+K+
Sbjct: 67 -PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVEKI 125
Query: 252 ESMGSQSGKTSKKIVLRS 269
E + + + K + + S
Sbjct: 126 EKVETDGDRPLKDVKITS 143
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 154 bits (392), Expect = 6e-46
Identities = 72/135 (53%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
RL + PKT ENF T + + ++ FHRVI FM Q GD T +GTGG+SI+G +
Sbjct: 12 RLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKE 67
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE + +LKH P LSMANAGPNTNGSQFFITTV T WLDN+H VFG VV+G+DVV++
Sbjct: 68 FEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQR 127
Query: 251 LESMGSQSGKTSKKI 265
+E+ ++ K +
Sbjct: 128 IEN--VKTDKNDRPY 140
Score = 153 bits (389), Expect = 2e-45
Identities = 72/136 (52%), Positives = 93/136 (68%), Gaps = 7/136 (5%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L + PKT ENF T + + ++ FHRVI FM Q GD T +GTGG+SI+G
Sbjct: 11 IRLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGK 66
Query: 325 KFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVK 383
+FEDE + +LKH P LSMANAGPNTNGSQFFITTV T WLDN+H VFG VV+G+DVV+
Sbjct: 67 EFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQ 126
Query: 384 KLESMGSQSGKTSKKI 399
++E+ ++ K +
Sbjct: 127 RIEN--VKTDKNDRPY 140
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 143 bits (363), Expect = 8e-42
Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 7/124 (5%)
Query: 139 PKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 196
PKT +NF L G+ + T FHR+I +FM QGGD T G GG SIYG KFEDE +
Sbjct: 19 PKTCKNFYELAK----RGYYNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIH 73
Query: 197 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS 256
LKHTG GILSMANAGPNTNGSQFFIT T WLD +H +FG V +G+ V++ + + +
Sbjct: 74 PELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT 133
Query: 257 QSGK 260
Q+ +
Sbjct: 134 QTDR 137
Score = 143 bits (363), Expect = 8e-42
Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 7/124 (5%)
Query: 273 PKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE-N 330
PKT +NF L G+ + T FHR+I +FM QGGD T G GG SIYG KFEDE +
Sbjct: 19 PKTCKNFYELAK----RGYYNGTIFHRLIKDFMIQGGDPTG-TGRGGASIYGKKFEDEIH 73
Query: 331 FTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGS 390
LKHTG GILSMANAGPNTNGSQFFIT T WLD +H +FG V +G+ V++ + + +
Sbjct: 74 PELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT 133
Query: 391 QSGK 394
Q+ +
Sbjct: 134 QTDR 137
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 143 bits (362), Expect = 2e-41
Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L D PK ENF LC +KG+ + + FHR I NFM QGGD T G GG+SI+G F
Sbjct: 15 LHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPF 70
Query: 193 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 251
+DE L H G G+LSMAN+GPNTNGSQFFIT LD +H VFG VV GL+ ++ +
Sbjct: 71 KDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAM 130
Query: 252 ESMGSQ-SGKTSKKIVLRSDVV 272
E++ + + ++I + V
Sbjct: 131 ENVPDPGTDRPKEEIKIEDTSV 152
Score = 141 bits (358), Expect = 8e-41
Identities = 64/121 (52%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L D PK ENF LC +KG+ + + FHR I NFM QGGD T G GG+SI+G F
Sbjct: 15 LHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGESIWGKPF 70
Query: 327 EDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKL 385
+DE L H G G+LSMAN+GPNTNGSQFFIT LD +H VFG VV GL+ ++ +
Sbjct: 71 KDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAM 130
Query: 386 E 386
E
Sbjct: 131 E 131
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 139 bits (352), Expect = 5e-40
Identities = 66/138 (47%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
KI L D PK ENF ALC G+ + FHR I FM Q GD T G GG+SI+G
Sbjct: 13 KIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGESIWG 68
Query: 324 NKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
KFEDE TLKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++G + +
Sbjct: 69 KKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETL 128
Query: 383 KKLESMGSQSGKTSKKIV 400
LE + K + +
Sbjct: 129 DTLEKL--PVDKKYRPLE 144
Score = 137 bits (347), Expect = 3e-39
Identities = 66/146 (45%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 122 IHWYRKGFKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNG 181
+H K L D PK ENF ALC G+ + FHR I FM Q GD T G
Sbjct: 5 LHTNLGDIKIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPTG-TG 60
Query: 182 TGGKSIYGNKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
GG+SI+G KFEDE TLKH G++SMAN GPNTNGSQFFIT K LD ++ VFG
Sbjct: 61 KGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGK 120
Query: 241 VVEGLDVVKKLESMGSQSGKTSKKIV 266
V++G + + LE + K + +
Sbjct: 121 VIDGFETLDTLEKL--PVDKKYRPLE 144
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 114 bits (287), Expect = 3e-30
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I L S PK NF LC G+ D+T FHRV+P F+ QGGD T GTGG+SIYG
Sbjct: 19 IELWSKEAPKACRNFIQLCLE----GYYDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYG 73
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
F+DE + L+ G++ MANAG ++NGSQFF T K L+N+H +FG V
Sbjct: 74 EPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127
Score = 113 bits (285), Expect = 5e-30
Identities = 52/107 (48%), Positives = 67/107 (62%), Gaps = 7/107 (6%)
Query: 138 VPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDE- 195
PK NF LC G+ D+T FHRV+P F+ QGGD T GTGG+SIYG F+DE
Sbjct: 26 APKACRNFIQLCLE----GYYDNTIFHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEF 80
Query: 196 NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 242
+ L+ G++ MANAG ++NGSQFF T K L+N+H +FG V
Sbjct: 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127
>gnl|CDD|222023 pfam13281, DUF4071, Domain of unknown function (DUF4071). This
domain is found at the N-terminus of many
serine-threonine kinase-like proteins.
Length = 365
Score = 110 bits (276), Expect = 5e-27
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 68 RNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRK 127
RNK DRE+A Q++ +ALE +E PDM CLCGRIYKD+F+ES+Y D++SL AI WYRK
Sbjct: 183 RNKAGDREKALQVLLEALEKKEGPSPDMYCLCGRIYKDRFLESEYTDRESLDKAIEWYRK 242
Query: 128 GFK 130
GF+
Sbjct: 243 GFE 245
Score = 94.3 bits (235), Expect = 2e-21
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 2 IEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGN 61
+ +ALE +E PDM CLCGRIYKD+F+ES+Y D++SL AI WYRKGF+ + N
Sbjct: 196 LLEALEKKEGPSPDMYCLCGRIYKDRFLESEYTDRESLDKAIEWYRKGFEADPNEYPGIN 255
Query: 62 IEV-MVIRNKNDDRERATQMIEKALETQ 88
+ +VI+ + +R + I L
Sbjct: 256 LATLLVIKGPDFERSSELRKIGVTLNNL 283
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 94.3 bits (235), Expect = 5e-23
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
I L +D P NF LC K + F F+ V +F+ Q GD T G GG+SIY
Sbjct: 11 IDLFTDECPLACLNFLKLCK-LKYYNF--CLFYNVQKDFIAQTGDPTG-TGAGGESIYSQ 66
Query: 325 K-------FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSV 375
FE E LKH+ G +SM NAG N NGSQF+IT + +LD +H VFG V
Sbjct: 67 LYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQV 126
Query: 376 VEGLDVVKKL 385
VEG DV++K+
Sbjct: 127 VEGFDVLEKI 136
Score = 93.9 bits (234), Expect = 7e-23
Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK- 191
L +D P NF LC K + F F+ V +F+ Q GD T G GG+SIY
Sbjct: 13 LFTDECPLACLNFLKLCK-LKYYNF--CLFYNVQKDFIAQTGDPTG-TGAGGESIYSQLY 68
Query: 192 ------FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVK-TAWLDNRHVVFGSVVE 243
FE E LKH+ G +SM NAG N NGSQF+IT + +LD +H VFG VVE
Sbjct: 69 GRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVE 128
Query: 244 GLDVVKKL 251
G DV++K+
Sbjct: 129 GFDVLEKI 136
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 83.0 bits (205), Expect = 4e-18
Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 133 LRSDVVPKTAENFRALCTGEKGF----GFK----DSTFHRVIPNF-MCQGGDFTNHNGTG 183
L DVVP+T ENFRAL TG G G K + H V N + G+ + N
Sbjct: 73 LFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN--- 129
Query: 184 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 243
S G DE + +HT G+L+M + GP+T+GS F IT + LD + VVFG V+
Sbjct: 130 -VSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVD 188
Query: 244 GLDVVKKLESM 254
L +++KLES+
Sbjct: 189 DLSLLEKLESL 199
Score = 83.0 bits (205), Expect = 4e-18
Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 267 LRSDVVPKTAENFRALCTGEKGF----GFK----DSTFHRVIPNF-MCQGGDFTNHNGTG 317
L DVVP+T ENFRAL TG G G K + H V N + G+ + N
Sbjct: 73 LFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN--- 129
Query: 318 GKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE 377
S G DE + +HT G+L+M + GP+T+GS F IT + LD + VVFG V+
Sbjct: 130 -VSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVD 188
Query: 378 GLDVVKKLESM 388
L +++KLES+
Sbjct: 189 DLSLLEKLESL 199
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 72.5 bits (178), Expect = 2e-15
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGN 324
+ L D P T ENF A KGF + ++ FHRVI F+ QGG FT
Sbjct: 11 VELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFT----PDLAQKETL 63
Query: 325 K--FEDENFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVV 376
K + L +T G ++MA P++ SQFFI A LD + + VFG V
Sbjct: 64 KPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVT 122
Query: 377 EGLDVVKKLES 387
EG+DVV K+
Sbjct: 123 EGMDVVDKIAG 133
Score = 70.9 bits (174), Expect = 9e-15
Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK- 191
L D P T ENF A KGF + ++ FHRVI F+ QGG FT K
Sbjct: 13 LYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFT----PDLAQKETLKP 65
Query: 192 -FEDENFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVVEG 244
+ L +T G ++MA P++ SQFFI A LD + + VFG V EG
Sbjct: 66 IKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEG 124
Query: 245 LDVVKKLES 253
+DVV K+
Sbjct: 125 MDVVDKIAG 133
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 64.9 bits (158), Expect = 1e-12
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 135 SDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFE 193
D P+T +NF C GF ++T FHRVI FM QGG F G K+
Sbjct: 17 DDKAPETVKNFLDYCRE----GFYNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKN 70
Query: 194 DENFTLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEG 244
+ N LK+T G L+MA P++ +QFFI V +L+ + VF VVEG
Sbjct: 71 EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEG 129
Query: 245 LDVVKKLESMGS 256
+DVV K++ + +
Sbjct: 130 MDVVDKIKGVAT 141
Score = 64.9 bits (158), Expect = 1e-12
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 269 SDVVPKTAENFRALCTGEKGFGFKDST-FHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFE 327
D P+T +NF C GF ++T FHRVI FM QGG F G K+
Sbjct: 17 DDKAPETVKNFLDYCRE----GFYNNTIFHRVINGFMIQGGGF--EPGMKQKATKEPIKN 70
Query: 328 DENFTLKHTGPGILSMANAG-PNTNGSQFFITTVKTAWLDNR--------HVVFGSVVEG 378
+ N LK+T G L+MA P++ +QFFI V +L+ + VF VVEG
Sbjct: 71 EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEG 129
Query: 379 LDVVKKLESMGS 390
+DVV K++ + +
Sbjct: 130 MDVVDKIKGVAT 141
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 63.3 bits (154), Expect = 1e-11
Identities = 54/167 (32%), Positives = 71/167 (42%), Gaps = 46/167 (27%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L S P + +NF GF + ++TFHRVIP FM QGG FT
Sbjct: 44 LNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT--------------- 85
Query: 193 EDENFTLKHTGPGILSMANAG-PNTNG--------------SQFFITTVKTAWLDN---- 233
E K P I + A+ G NT G SQFFI A+LD+
Sbjct: 86 --EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 143
Query: 234 -RHVVFGSVVEGLDVVKKL-----ESMGSQSGKTSKKIVLRS-DVVP 273
+ VFG VV+G+DV K+ +G SK +V+ S V+P
Sbjct: 144 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190
Score = 61.4 bits (149), Expect = 4e-11
Identities = 47/139 (33%), Positives = 60/139 (43%), Gaps = 40/139 (28%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L S P + +NF GF + ++TFHRVIP FM QGG FT
Sbjct: 44 LNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT--------------- 85
Query: 327 EDENFTLKHTGPGILSMANAG-PNTNG--------------SQFFITTVKTAWLDN---- 367
E K P I + A+ G NT G SQFFI A+LD+
Sbjct: 86 --EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 143
Query: 368 -RHVVFGSVVEGLDVVKKL 385
+ VFG VV+G+DV K+
Sbjct: 144 FGYAVFGKVVKGMDVADKI 162
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 57.8 bits (140), Expect = 6e-10
Identities = 48/156 (30%), Positives = 64/156 (41%), Gaps = 37/156 (23%)
Query: 265 IVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG------- 317
IVL P TA NF L E+GF + FHRV F+ Q GD N
Sbjct: 11 IVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGK 67
Query: 318 -------------GKSIYGNKFE-----DENFTLKHTGPGILSMANA--GPNTNGSQFFI 357
+ +YG E DE L G ++MA PN+ SQFF
Sbjct: 68 SRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFF 127
Query: 358 -------TTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
T + LD R+ VFG V +GLD++++L+
Sbjct: 128 LLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163
Score = 54.8 bits (132), Expect = 5e-09
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 37/148 (25%)
Query: 139 PKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTG--------------- 183
P TA NF L E+GF + FHRV F+ Q GD N
Sbjct: 19 PVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEI 75
Query: 184 -----GKSIYGNKFE-----DENFTLKHTGPGILSMANA--GPNTNGSQFFI-------T 224
+ +YG E DE L G ++MA PN+ SQFF T
Sbjct: 76 KPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELT 135
Query: 225 TVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+ LD R+ VFG V +GLD++++L+
Sbjct: 136 PSRNNVLDGRYAVFGYVTDGLDILRELK 163
>gnl|CDD|224476 COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 308
Score = 29.9 bits (68), Expect = 2.4
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 81 IEKALETQENNI---PDMLC--LCGRIYKD--KFVESQYK--DKQSLANAIHWYRKGFKG 131
+E+AL I P L GR V + Y+ L I R+ F G
Sbjct: 115 LEEALANGRGVILVTPHFGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLITRGRERFGG 174
Query: 132 RLRSDVVPKTAENFRALC 149
RL +P+ E R L
Sbjct: 175 RL----LPRKGEGIRQLI 188
>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19). Rab19 subfamily.
Rab19 proteins are associated with Golgi stacks.
Similarity analysis indicated that Rab41 is closely
related to Rab19. However, the function of these Rabs is
not yet characterized. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 165
Score = 28.6 bits (64), Expect = 3.6
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 36 KQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDM 95
+ S + HW + KY S N+ +++I NK D E+ + E+A E+ +
Sbjct: 88 RSSFESVPHWIEEVEKYGAS-----NVVLLLIGNKCDLEEQREVLFEEACTLAEHY--GI 140
Query: 96 LCLCGRIYKDKFVESQYKDKQSLANA 121
L + +E+ K+ ++ A
Sbjct: 141 LAV---------LETSAKESSNVEEA 157
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.7 bits (68), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 61 NIEVMV--IRNKNDDRERATQMIEKALE 86
IEV+V + K D R+R IE AL+
Sbjct: 201 TIEVVVDRLVVKEDIRQRLADSIETALK 228
>gnl|CDD|102059 PRK05917, PRK05917, DNA polymerase III subunit delta'; Validated.
Length = 290
Score = 28.6 bits (64), Expect = 5.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 98 LCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVPK 140
L I K+ E+ YK Q + IH + KGRL S P+
Sbjct: 39 LASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPR 81
>gnl|CDD|226497 COG4009, COG4009, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 88
Score = 26.7 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 235 HVVFGSVVEGLDVVKK-LESMGSQSGKTSKKIVLR 268
+VVF VE + V++ LE MG++ + SK + R
Sbjct: 52 YVVFLEEVESEEEVERELEDMGAEINRDSKASLRR 86
>gnl|CDD|212126 cd10815, GH38N_AMII_EcMngB_like, N-terminal catalytic domain of
Escherichia coli alpha-mannosidase MngB and its
bacterial homologs; glycoside hydrolase family 38
(GH38). The bacterial subfamily is represented by
Escherichia coli alpha-mannosidase MngB, which is
encoded by the mngB gene (previously called ybgG). MngB
exhibits alpha-mannosidase activity that converts
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. A divalent metal ion is required for its
activity.
Length = 270
Score = 28.3 bits (64), Expect = 7.9
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 153 KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED 194
GFG ++ F R + + + +F G +
Sbjct: 134 NGFGIDNAVFWRGVSEDLVKSTEFIWK-SLDGSKVLAANIPF 174
Score = 28.3 bits (64), Expect = 7.9
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 287 KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED 328
GFG ++ F R + + + +F G +
Sbjct: 134 NGFGIDNAVFWRGVSEDLVKSTEFIWK-SLDGSKVLAANIPF 174
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 28.4 bits (64), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 105 DKFVESQYKDKQSLANAI--HWYRKGFKGRLRSDVVPK 140
D+++ Q + K+++A A+ W R + LR +V PK
Sbjct: 14 DRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK 51
>gnl|CDD|107309 cd06314, PBP1_tmGBP, Periplasmic sugar-binding domain of Thermotoga
maritima glucose-binding protein (tmGBP) and its close
homologs. Periplasmic sugar-binding domain of
Thermotoga maritima glucose-binding protein (tmGBP) and
its close homologs from other bacteria. They are a
member of the type I periplasmic binding protein
superfamily which consists of two domains connected by a
three-stranded hinge. TmGBP is specific for glucose and
its binding pocket is buried at the interface of the two
domains. TmGBP also exhibits high thermostability and
the highest structural similarity to E. coli glucose
binding protein (ecGBP).
Length = 271
Score = 27.8 bits (62), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 47 RKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCG 100
+G K + S IE++ R +D +A E AL N PD+ C+ G
Sbjct: 139 IQGIKDAIKDS---KIEIVDTRGDEEDFAKAKSNAEDAL----NAHPDLKCMFG 185
>gnl|CDD|221747 pfam12740, Chlorophyllase2, Chlorophyllase enzyme. This family
consists of several chlorophyllase and chlorophyllase-2
(EC:3.1.1.14) enzymes. Chlorophyllase (Chlase) is the
first enzyme involved in chlorophyll (Chl) degradation
and catalyzes the hydrolysis of an ester bond to yield
chlorophyllide and phytol. The family includes both
plant and Amphioxus members.
Length = 258
Score = 27.8 bits (62), Expect = 9.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 93 PDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKGRLRSDVVP 139
P + + G + S A +W +G + L +VVP
Sbjct: 50 PQLYTITGP--------DTTDEINSAAEVANWLPQGLQSVLPPNVVP 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,856,258
Number of extensions: 1868637
Number of successful extensions: 1522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 49
Length of query: 403
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 304
Effective length of database: 6,546,556
Effective search space: 1990153024
Effective search space used: 1990153024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)