RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy443
(403 letters)
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 310 bits (796), Expect = e-106
Identities = 101/134 (75%), Positives = 117/134 (87%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 32 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 91
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E
Sbjct: 92 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151
Query: 253 SMGSQSGKTSKKIV 266
+ GS+ GK +K++
Sbjct: 152 AQGSKDGKPKQKVI 165
Score = 310 bits (796), Expect = e-106
Identities = 101/134 (75%), Positives = 117/134 (87%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
LRSDVVP TAENFR LCT EKGFGFK S+FHR+IP FMCQGGDFTNHNGTGGKSIYG KF
Sbjct: 32 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 91
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
+DENF LKHTGPG+LSMAN+GPNTNGSQFF+T KT WLD +HVVFG V EGLDV++++E
Sbjct: 92 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151
Query: 387 SMGSQSGKTSKKIV 400
+ GS+ GK +K++
Sbjct: 152 AQGSKDGKPKQKVI 165
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 310 bits (796), Expect = e-106
Identities = 94/134 (70%), Positives = 113/134 (84%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
LRSD+VP+TAENFRALCTGE+GFG+ + FHRVIP FMCQGGDF +GTGGKSIYG KF
Sbjct: 31 LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
+DENF L+H G G+LSMAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+E
Sbjct: 91 DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 253 SMGSQSGKTSKKIV 266
S+GS+SGK + ++
Sbjct: 151 SVGSKSGKVKEPVI 164
Score = 310 bits (796), Expect = e-106
Identities = 94/134 (70%), Positives = 113/134 (84%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
LRSD+VP+TAENFRALCTGE+GFG+ + FHRVIP FMCQGGDF +GTGGKSIYG KF
Sbjct: 31 LRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF 90
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
+DENF L+H G G+LSMAN+GPNTNGSQFFI T K WLD +HVVFG VV+G +VVKK+E
Sbjct: 91 DDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME 150
Query: 387 SMGSQSGKTSKKIV 400
S+GS+SGK + ++
Sbjct: 151 SVGSKSGKVKEPVI 164
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 309 bits (793), Expect = e-106
Identities = 111/134 (82%), Positives = 125/134 (93%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 24 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 83
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+E
Sbjct: 84 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143
Query: 253 SMGSQSGKTSKKIV 266
S GS+SG+TSKKIV
Sbjct: 144 SFGSKSGRTSKKIV 157
Score = 309 bits (793), Expect = e-106
Identities = 111/134 (82%), Positives = 125/134 (93%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L++DVVPKTAENFRALCTGEKGFG+K STFHRVIP+FMCQ GDFTNHNGTGGKSIYG++F
Sbjct: 24 LKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 83
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENFTLKH GPG+LSMANAGPNTNGSQFFI T+KT WLD +HVVFG V+EG+DVVKK+E
Sbjct: 84 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE 143
Query: 387 SMGSQSGKTSKKIV 400
S GS+SG+TSKKIV
Sbjct: 144 SFGSKSGRTSKKIV 157
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 308 bits (791), Expect = e-106
Identities = 97/134 (72%), Positives = 110/134 (82%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23 LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
Query: 253 SMGSQSGKTSKKIV 266
GS SGKT+ I
Sbjct: 143 GKGSASGKTNATIK 156
Score = 308 bits (791), Expect = e-106
Identities = 97/134 (72%), Positives = 110/134 (82%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L + VPKTA+NFR L TG+ GFG+KDS FHRVIP FM QGGDFT HNGTGGKSIYG KF
Sbjct: 23 LYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF 82
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF +KHT PG+LSMANAG NTNGSQFFITTV T+WLD +HVVFG V+EGLD+V+K+E
Sbjct: 83 ADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
Query: 387 SMGSQSGKTSKKIV 400
GS SGKT+ I
Sbjct: 143 GKGSASGKTNATIK 156
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 308 bits (791), Expect = e-105
Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162
Query: 253 SMGSQSGKTSKKIV 266
GS++GKTSKKI
Sbjct: 163 RFGSRNGKTSKKIT 176
Score = 308 bits (791), Expect = e-105
Identities = 104/134 (77%), Positives = 115/134 (85%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L +D VPKTAENFRAL TGEKGFG+K S FHR+IP FMCQGGDFT HNGTGGKSIYG KF
Sbjct: 43 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 102
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
EDENF LKHTGPGILSMANAGPNTNGSQFFI T KT WLD +HVVFG V EG+++V+ +E
Sbjct: 103 EDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 162
Query: 387 SMGSQSGKTSKKIV 400
GS++GKTSKKI
Sbjct: 163 RFGSRNGKTSKKIT 176
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 305 bits (784), Expect = e-104
Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 186
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 187 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
IYG F DENF +KH PG+LSMANAGPNTN SQFFIT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 247 VVKKLESMGSQSGKTSKKIV 266
VV+++E G++SG + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163
Score = 305 bits (784), Expect = e-104
Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 6/140 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEK------GFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKS 320
L SD+ P+T ENFRALCTGEK +K+S FHR+IP FMCQGGD TN NG+GG+S
Sbjct: 24 LFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83
Query: 321 IYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
IYG F DENF +KH PG+LSMANAGPNTN SQFFIT V WLD +HVVFG V+EG++
Sbjct: 84 IYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 381 VVKKLESMGSQSGKTSKKIV 400
VV+++E G++SG + +V
Sbjct: 144 VVREMEKEGAKSGYVKRSVV 163
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 306 bits (785), Expect = e-104
Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 7/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
L +D VP TAENFRALCTGEKG G + S FHR+IP FM QGGDFT +GTGG+
Sbjct: 40 LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99
Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
SIYG+KF DENF H P +LSMANAGPNTNGSQFFITTV WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 246 DVVKKLESMGSQSGKTSKKIV 266
+VVK +E GSQ+GK +K +
Sbjct: 160 EVVKSIEKCGSQNGKPTKSVC 180
Score = 306 bits (785), Expect = e-104
Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 7/141 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
L +D VP TAENFRALCTGEKG G + S FHR+IP FM QGGDFT +GTGG+
Sbjct: 40 LFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGE 99
Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
SIYG+KF DENF H P +LSMANAGPNTNGSQFFITTV WLD +HVVFG V+EG+
Sbjct: 100 SIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 380 DVVKKLESMGSQSGKTSKKIV 400
+VVK +E GSQ+GK +K +
Sbjct: 160 EVVKSIEKCGSQNGKPTKSVC 180
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 304 bits (782), Expect = e-104
Identities = 103/141 (73%), Positives = 110/141 (78%), Gaps = 7/141 (4%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 185
L DVVPKTA NFRALCTGE G G FK S FHR+IPNFM QGGDFT NGTGG+
Sbjct: 24 LYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83
Query: 186 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 245
SIYG KF DENF KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGL
Sbjct: 84 SIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143
Query: 246 DVVKKLESMGSQSGKTSKKIV 266
DVVK +ES GSQSGK K +
Sbjct: 144 DVVKAVESNGSQSGKPVKDCM 164
Score = 304 bits (782), Expect = e-104
Identities = 103/141 (73%), Positives = 110/141 (78%), Gaps = 7/141 (4%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG-------FKDSTFHRVIPNFMCQGGDFTNHNGTGGK 319
L DVVPKTA NFRALCTGE G G FK S FHR+IPNFM QGGDFT NGTGG+
Sbjct: 24 LYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGE 83
Query: 320 SIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGL 379
SIYG KF DENF KHTGPG+LSMANAGPNTNGSQFF+ TVKT WLD +HVVFG VVEGL
Sbjct: 84 SIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143
Query: 380 DVVKKLESMGSQSGKTSKKIV 400
DVVK +ES GSQSGK K +
Sbjct: 144 DVVKAVESNGSQSGKPVKDCM 164
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 304 bits (782), Expect = e-104
Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 36 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 253 SMGSQS-GKTSKKIV 266
S + S K K ++
Sbjct: 156 STKTDSRDKPLKDVI 170
Score = 304 bits (782), Expect = e-104
Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L VPKT +NF AL TGEKGFG+K+S FHRVI +FM QGGDFT +GTGGKSIYG +F
Sbjct: 36 LFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF 95
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF LKH GPG +SMANAG +TNGSQFFITTVKTAWLD +HVVFG V+EG++VV+K+E
Sbjct: 96 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVE 155
Query: 387 SMGSQS-GKTSKKIV 400
S + S K K ++
Sbjct: 156 STKTDSRDKPLKDVI 170
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 304 bits (780), Expect = e-104
Identities = 90/132 (68%), Positives = 102/132 (77%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L D+VPKTA+NFR LC KG G+K STFHR+IP FM QGGD+T HNGTGG+SIYG KF
Sbjct: 48 LEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DENF LKHT GILSMAN G +TNGSQFFIT KT WLD +HVVFG VVEG+DVV K+
Sbjct: 108 PDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIA 167
Query: 253 SMGSQSGKTSKK 264
GS+SG+ K
Sbjct: 168 KYGSESGQVKKG 179
Score = 304 bits (780), Expect = e-104
Identities = 90/132 (68%), Positives = 102/132 (77%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L D+VPKTA+NFR LC KG G+K STFHR+IP FM QGGD+T HNGTGG+SIYG KF
Sbjct: 48 LEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF 107
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 386
DENF LKHT GILSMAN G +TNGSQFFIT KT WLD +HVVFG VVEG+DVV K+
Sbjct: 108 PDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIA 167
Query: 387 SMGSQSGKTSKK 398
GS+SG+ K
Sbjct: 168 KYGSESGQVKKG 179
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 298 bits (765), Expect = e-102
Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 4/138 (2%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L VPKTA+NFR LC G G+++STFHR+IPNFM QGGDFT NGTGG+SIYG+KF
Sbjct: 28 LFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKF 87
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKK 250
DENF+ KH GILSMANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK+
Sbjct: 88 ADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKE 147
Query: 251 LESMGSQSG--KTSKKIV 266
+E++GS SG +++ +
Sbjct: 148 IEALGSSSGSVRSNTRPK 165
Score = 298 bits (765), Expect = e-102
Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 4/138 (2%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 326
L VPKTA+NFR LC G G+++STFHR+IPNFM QGGDFT NGTGG+SIYG+KF
Sbjct: 28 LFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKF 87
Query: 327 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVE--GLDVVKK 384
DENF+ KH GILSMANAGPNTNGSQFFITT T+WLD +HVVFG V + VVK+
Sbjct: 88 ADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKE 147
Query: 385 LESMGSQSG--KTSKKIV 400
+E++GS SG +++ +
Sbjct: 148 IEALGSSSGSVRSNTRPK 165
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 296 bits (761), Expect = e-101
Identities = 81/143 (56%), Positives = 102/143 (71%), Gaps = 6/143 (4%)
Query: 264 KIVLRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
KI L +DVVPKTAENFR CTGE G+K STFHRVI +FM QGGDF N +GTG
Sbjct: 28 KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV 87
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
SIY F DENF L+H+ PG+LSMAN+GP+TNG QFFIT K WLD +HVVFG +++G
Sbjct: 88 ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 379 LDVVKKLESMGS-QSGKTSKKIV 400
L V++K+E++ + + K +V
Sbjct: 148 LLVMRKIENVPTGPNNKPKLPVV 170
Score = 296 bits (761), Expect = e-101
Identities = 79/140 (56%), Positives = 100/140 (71%), Gaps = 6/140 (4%)
Query: 133 LRSDVVPKTAENFRALCTGE-----KGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 187
L +DVVPKTAENFR CTGE G+K STFHRVI +FM QGGDF N +GTG SI
Sbjct: 31 LFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASI 90
Query: 188 YGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDV 247
Y F DENF L+H+ PG+LSMAN+GP+TNG QFFIT K WLD +HVVFG +++GL V
Sbjct: 91 YRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLV 150
Query: 248 VKKLESMGS-QSGKTSKKIV 266
++K+E++ + + K +V
Sbjct: 151 MRKIENVPTGPNNKPKLPVV 170
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 296 bits (760), Expect = e-101
Identities = 88/145 (60%), Positives = 101/145 (69%), Gaps = 4/145 (2%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGT 316
+ +I L P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GT
Sbjct: 22 SEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGT 81
Query: 317 GGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV 376
GGKSIYG KF DEN +KH G LSMANAGPNTNGSQFFITT T WLD RHVVFG V+
Sbjct: 82 GGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVL 140
Query: 377 EGLDVVKKLESMGSQS-GKTSKKIV 400
+G+DVV ++E + S + K +
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVK 165
Score = 296 bits (760), Expect = e-101
Identities = 87/135 (64%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKF 192
L P T ENFR LCTGE GFG+KDS FHRVI NFM QGGDFTN +GTGGKSIYG KF
Sbjct: 32 LFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKF 91
Query: 193 EDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLE 252
DEN +KH G LSMANAGPNTNGSQFFITT T WLD RHVVFG V++G+DVV ++E
Sbjct: 92 ADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIE 150
Query: 253 SMGSQS-GKTSKKIV 266
+ S + K +
Sbjct: 151 KTKTNSHDRPVKPVK 165
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 293 bits (753), Expect = 1e-99
Identities = 73/143 (51%), Positives = 95/143 (66%), Gaps = 9/143 (6%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L SD+ PKT +NF LC+GEKG G +K STFHRV+ NFM QGGDF+ NG GG
Sbjct: 40 LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG F+DENF LKH +LSMAN G +TNGSQFFITT LD HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159
Query: 245 LDVVKKLESMGSQSG-KTSKKIV 266
+V++++E++ + + + +
Sbjct: 160 FEVIEQIENLKTDAASRPYADVR 182
Score = 293 bits (753), Expect = 1e-99
Identities = 73/143 (51%), Positives = 95/143 (66%), Gaps = 9/143 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SD+ PKT +NF LC+GEKG G +K STFHRV+ NFM QGGDF+ NG GG
Sbjct: 40 LFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGG 99
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG F+DENF LKH +LSMAN G +TNGSQFFITT LD HVVFG V+ G
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISG 159
Query: 379 LDVVKKLESMGSQSG-KTSKKIV 400
+V++++E++ + + + +
Sbjct: 160 FEVIEQIENLKTDAASRPYADVR 182
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 293 bits (752), Expect = 1e-99
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 9/143 (6%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 245 LDVVKKLESMGSQSG-KTSKKIV 266
+VV+++E+ + + K ++
Sbjct: 150 QEVVREIENQKTDAASKPFAEVR 172
Score = 293 bits (752), Expect = 1e-99
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 9/143 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L SDV PKT ENFR LCTGEKG G +K FHRV+ +FM QGGDF+ NG GG
Sbjct: 30 LFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGG 89
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG FEDE+F +KH +LSMAN G +TNGSQFFITT T LD HVVFG V+ G
Sbjct: 90 ESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG 149
Query: 379 LDVVKKLESMGSQSG-KTSKKIV 400
+VV+++E+ + + K ++
Sbjct: 150 QEVVREIENQKTDAASKPFAEVR 172
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 292 bits (751), Expect = 1e-99
Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 9/143 (6%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L +D+ P+T NF LCTG G G +K STFHRVI NFM QGGDFT +GTGG
Sbjct: 27 LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 86
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG F+DE F +KH P ++SMAN GPNTNGSQFFITT L+N HVVFG VV G
Sbjct: 87 ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146
Query: 245 LDVVKKLESMGSQS-GKTSKKIV 266
+VV K+E + + S + +V
Sbjct: 147 QEVVTKIEYLKTNSKNRPLADVV 169
Score = 292 bits (751), Expect = 1e-99
Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 9/143 (6%)
Query: 267 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
L +D+ P+T NF LCTG G G +K STFHRVI NFM QGGDFT +GTGG
Sbjct: 27 LYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGG 86
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
+SIYG F+DE F +KH P ++SMAN GPNTNGSQFFITT L+N HVVFG VV G
Sbjct: 87 ESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146
Query: 379 LDVVKKLESMGSQS-GKTSKKIV 400
+VV K+E + + S + +V
Sbjct: 147 QEVVTKIEYLKTNSKNRPLADVV 169
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 289 bits (742), Expect = 1e-97
Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 9/146 (6%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGG 318
K L ++VPKT+ENFR CTGE G+K++ FHRVI FM QGGDF NHNG+G
Sbjct: 77 KFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS 136
Query: 319 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-- 376
SIYG KF+DENF +KH G+LSMAN+GPNTNG QFFITT K WLD ++VVFG ++
Sbjct: 137 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDN 196
Query: 377 EGLDVVKKLESMGSQS--GKTSKKIV 400
+ L ++KK+E++ K I
Sbjct: 197 DSLLLLKKIENVSVTPYIYKPKIPIN 222
Score = 289 bits (742), Expect = 1e-97
Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 9/143 (6%)
Query: 133 LRSDVVPKTAENFRALCTGEKGF-----GFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSI 187
L ++VPKT+ENFR CTGE G+K++ FHRVI FM QGGDF NHNG+G SI
Sbjct: 80 LFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSI 139
Query: 188 YGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV--EGL 245
YG KF+DENF +KH G+LSMAN+GPNTNG QFFITT K WLD ++VVFG ++ + L
Sbjct: 140 YGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSL 199
Query: 246 DVVKKLESMGSQS--GKTSKKIV 266
++KK+E++ K I
Sbjct: 200 LLLKKIENVSVTPYIYKPKIPIN 222
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 286 bits (734), Expect = 2e-94
Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 10/152 (6%)
Query: 259 GKTSKKIV--LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGG 308
G+ +IV L +D+VPKTAENFRALCTGEKG G FK FHR+I FM QGG
Sbjct: 26 GERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGG 85
Query: 309 DFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNR 368
DF+N NGTGG+SIYG KFEDENF KH G+LSMANAG NTNGSQFFITTV T LD +
Sbjct: 86 DFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 145
Query: 369 HVVFGSVVEGLDVVKKLESMGSQSGKTSKKIV 400
HVVFG V++G+ V K LE++ + K +K V
Sbjct: 146 HVVFGQVIKGMGVAKILENVEVKGEKPAKLCV 177
Score = 286 bits (734), Expect = 2e-94
Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 8/142 (5%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFG--------FKDSTFHRVIPNFMCQGGDFTNHNGTGG 184
L +D+VPKTAENFRALCTGEKG G FK FHR+I FM QGGDF+N NGTGG
Sbjct: 36 LFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGG 95
Query: 185 KSIYGNKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 244
+SIYG KFEDENF KH G+LSMANAG NTNGSQFFITTV T LD +HVVFG V++G
Sbjct: 96 ESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG 155
Query: 245 LDVVKKLESMGSQSGKTSKKIV 266
+ V K LE++ + K +K V
Sbjct: 156 MGVAKILENVEVKGEKPAKLCV 177
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 263 bits (674), Expect = 3e-87
Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 31/165 (18%)
Query: 133 LRSDVVPKTAENFRALCTGEKG-----------------FGFKDSTFHRVIPNFMCQGGD 175
L D P ENF L G+ ++ FH V+ N GD
Sbjct: 35 LFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGD 94
Query: 176 FTNHNGTGGKSIYGNKFED---ENFTLKHTGPGILSMA----NAGPNTNGSQFFIT---- 224
N NG+ ++Y ++ ++ H G+LS+ +G S F IT
Sbjct: 95 IYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDI 154
Query: 225 --TVKTAWLDNRHVVFGSVVEGLDVVKKLESM-GSQSGKTSKKIV 266
+ LD VV G V GLDV+ K+ SM +G+
Sbjct: 155 RPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFS 199
Score = 263 bits (674), Expect = 3e-87
Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 31/165 (18%)
Query: 267 LRSDVVPKTAENFRALCTGEKG-----------------FGFKDSTFHRVIPNFMCQGGD 309
L D P ENF L G+ ++ FH V+ N GD
Sbjct: 35 LFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGD 94
Query: 310 FTNHNGTGGKSIYGNKFED---ENFTLKHTGPGILSMA----NAGPNTNGSQFFIT---- 358
N NG+ ++Y ++ ++ H G+LS+ +G S F IT
Sbjct: 95 IYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDI 154
Query: 359 --TVKTAWLDNRHVVFGSVVEGLDVVKKLESM-GSQSGKTSKKIV 400
+ LD VV G V GLDV+ K+ SM +G+
Sbjct: 155 RPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFS 199
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 206 bits (527), Expect = 4e-66
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I L KT +NF G+ + + FHRVI +FM Q GD + +GTGG+SI+G
Sbjct: 18 HISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWG 73
Query: 324 NKFEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
N+FEDE F L H+ P ++SMAN GPNTNGSQFFITTV WLD +H VFG V +G +V
Sbjct: 74 NEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIV 133
Query: 383 KKLES 387
+E
Sbjct: 134 LDIEK 138
Score = 205 bits (525), Expect = 1e-65
Identities = 61/123 (49%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L KT +NF G+ + + FHRVI +FM Q GD + +GTGG+SI+GN+
Sbjct: 20 SLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNE 75
Query: 192 FEDENF-TLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE F L H+ P ++SMAN GPNTNGSQFFITTV WLD +H VFG V +G +V
Sbjct: 76 FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLD 135
Query: 251 LES 253
+E
Sbjct: 136 IEK 138
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 207 bits (530), Expect = 6e-66
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
+ L PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG
Sbjct: 24 VLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYG 79
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
+FEDE + LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V
Sbjct: 80 KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139
Query: 383 KKLESM 388
++ +
Sbjct: 140 NRVGMV 145
Score = 206 bits (527), Expect = 2e-65
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +
Sbjct: 26 ELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQ 81
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE + LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V +
Sbjct: 82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 251 LESM 254
+ +
Sbjct: 142 VGMV 145
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 204 bits (522), Expect = 3e-65
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
+ L PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG
Sbjct: 24 VLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYG 79
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
+FEDE + LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V
Sbjct: 80 KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139
Query: 383 KKLESM 388
++ +
Sbjct: 140 NRVGMV 145
Score = 203 bits (519), Expect = 7e-65
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L PKT +NF L +G+ + + FHR+I +FM QGGD T G GG SIYG +
Sbjct: 26 ELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTG-TGRGGASIYGKQ 81
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE + LK TG GIL+MANAGP+TNGSQFF+T T WLD +H +FG V +G+ +V +
Sbjct: 82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 251 LESM 254
+ +
Sbjct: 142 VGMV 145
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 204 bits (522), Expect = 3e-65
Identities = 67/137 (48%), Positives = 83/137 (60%), Gaps = 8/137 (5%)
Query: 255 GSQSGKTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFT 311
S TS L PKT ENF G+ + TFHR+I FM Q GD T
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPT 78
Query: 312 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHV 370
G GG+SI+G +FEDE + TL+H P LSMANAG NTNGSQFFIT V T WLDN+H
Sbjct: 79 G-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHT 137
Query: 371 VFGSVVEGLDVVKKLES 387
VFG V +G++VV+++ +
Sbjct: 138 VFGRVTKGMEVVQRISN 154
Score = 204 bits (522), Expect = 4e-65
Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 7/141 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+L PKT ENF G+ + TFHR+I FM Q GD T G GG+SI+G +
Sbjct: 36 KLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTG-TGMGGESIWGGE 91
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE + TL+H P LSMANAG NTNGSQFFIT V T WLDN+H VFG V +G++VV++
Sbjct: 92 FEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQR 151
Query: 251 LESM--GSQSGKTSKKIVLRS 269
+ ++ ++ K + + + +
Sbjct: 152 ISNVKVNPKTDKPYEDVSIIN 172
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 199 bits (509), Expect = 6e-63
Identities = 65/126 (51%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
++ L PKT NF LC E GF + ++ FHRVIPNF+ QGGD T G GGKSIYG
Sbjct: 51 EVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYG 106
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
FEDE N LKHTG GILSM+N GPNTN SQFFIT LD +H +F V + + +
Sbjct: 107 EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCI 166
Query: 383 KKLESM 388
+ + S+
Sbjct: 167 ENIASV 172
Score = 198 bits (506), Expect = 2e-62
Identities = 65/124 (52%), Positives = 78/124 (62%), Gaps = 5/124 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L PKT NF LC E GF + ++ FHRVIPNF+ QGGD T G GGKSIYG
Sbjct: 53 ELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEY 108
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE N LKHTG GILSM+N GPNTN SQFFIT LD +H +F V + + ++
Sbjct: 109 FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIEN 168
Query: 251 LESM 254
+ S+
Sbjct: 169 IASV 172
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 188 bits (480), Expect = 5e-59
Identities = 63/126 (50%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
KI + + PKT ENF ALC + + FHR I FM Q GD T G GG SI+G
Sbjct: 13 KIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWG 68
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
KFEDE + LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ +
Sbjct: 69 KKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL 128
Query: 383 KKLESM 388
+LE +
Sbjct: 129 DELEKL 134
Score = 187 bits (476), Expect = 2e-58
Identities = 61/124 (49%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
+ + PKT ENF ALC + + FHR I FM Q GD T G GG SI+G K
Sbjct: 15 EVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKK 70
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
FEDE + LKH G++SMAN GPNTNGSQFFIT K LD ++ VFG V++GL+ + +
Sbjct: 71 FEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDE 130
Query: 251 LESM 254
LE +
Sbjct: 131 LEKL 134
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 187 bits (477), Expect = 2e-58
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 9/130 (6%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
K L PK +NF AL G+ +K++ FH+ I F+ QGGD T G GG+SIYG
Sbjct: 29 KFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYG 84
Query: 324 NKFEDENF-TLKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEG 378
F+DE + LK+ GILSMA+ G PNTNGSQFFIT L+ +V+FG +++G
Sbjct: 85 RYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDG 144
Query: 379 LDVVKKLESM 388
+ + LE+
Sbjct: 145 FETLNTLENC 154
Score = 186 bits (474), Expect = 9e-58
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L PK +NF AL G+ +K++ FH+ I F+ QGGD T G GG+SIYG
Sbjct: 31 ELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGESIYGRY 86
Query: 192 FEDENF-TLKHTGPGILSMANAG----PNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 246
F+DE + LK+ GILSMA+ G PNTNGSQFFIT L+ +V+FG +++G +
Sbjct: 87 FDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFE 146
Query: 247 VVKKLESM 254
+ LE+
Sbjct: 147 TLNTLENC 154
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 186 bits (475), Expect = 9e-58
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH----NGTGGK 319
I L +D+ P+ ++F LC + F D+ FHR I NFM QGG +
Sbjct: 19 NIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQ 75
Query: 320 SIY-------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVV 371
S G FEDE + L H G G+LSMAN G ++N S+FFIT L+N+H +
Sbjct: 76 SPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTI 135
Query: 372 FGSVVEGLDVVKKLESM 388
FG VV GLDV+++ E +
Sbjct: 136 FGRVVGGLDVLRQWEKL 152
Score = 185 bits (471), Expect = 3e-57
Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNH----NGTGGKSIY 188
L +D+ P+ ++F LC + F D+ FHR I NFM QGG +S
Sbjct: 22 LHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPR 78
Query: 189 -------GNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGS 240
G FEDE + L H G G+LSMAN G ++N S+FFIT L+N+H +FG
Sbjct: 79 SISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGR 138
Query: 241 VVEGLDVVKKLESM 254
VV GLDV+++ E +
Sbjct: 139 VVGGLDVLRQWEKL 152
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 186 bits (473), Expect = 1e-57
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
+ L D+ PKT ENF LC +K + + + FHR I NF+ QGGD T GTGG+S +G
Sbjct: 32 NLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWG 87
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVV 382
F+DE L HTG GILSMAN+GPN+N SQFFIT A+LD +H +FG VV G DV+
Sbjct: 88 KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVL 147
Query: 383 KKLESM 388
+E++
Sbjct: 148 TAMENV 153
Score = 184 bits (470), Expect = 4e-57
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 7/144 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L D+ PKT ENF LC +K + + + FHR I NF+ QGGD T GTGG+S +G
Sbjct: 34 ELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGESYWGKP 89
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKK 250
F+DE L HTG GILSMAN+GPN+N SQFFIT A+LD +H +FG VV G DV+
Sbjct: 90 FKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTA 149
Query: 251 LESM--GSQSGKTSKKIVLRSDVV 272
+E++ ++ + ++I + + V
Sbjct: 150 MENVESDPKTDRPKEEIRIDATTV 173
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 181 bits (462), Expect = 5e-56
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I L S PK NF LC + + + ++ FHRV+P F+ QGGD T G+GG+SIYG
Sbjct: 37 DIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYG 92
Query: 324 NKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDV 381
F+DE + L+ G+++MANAG + NGSQFF T + L+N+H +FG V + +
Sbjct: 93 APFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYN 152
Query: 382 VKKLE 386
+ +L
Sbjct: 153 MLRLS 157
Score = 180 bits (458), Expect = 2e-55
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNK 191
L S PK NF LC + + + ++ FHRV+P F+ QGGD T G+GG+SIYG
Sbjct: 39 ELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAP 94
Query: 192 FEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFGSVV-EGLDVVK 249
F+DE + L+ G+++MANAG + NGSQFF T + L+N+H +FG V + + +
Sbjct: 95 FKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNML 154
Query: 250 KLE 252
+L
Sbjct: 155 RLS 157
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 168 bits (428), Expect = 6e-51
Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 22/146 (15%)
Query: 260 KTSK---KIVLRSDVVPKTAENFRALCTGEKGFGFKDS------------TFHRVIPNFM 304
T++ KI L + PKT NF L G K + +++ FHRVI FM
Sbjct: 29 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 88
Query: 305 CQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTA 363
QGGD T G GG G KF DE + L+ P +L+MANAGP TNGSQFFIT KT
Sbjct: 89 IQGGDPTG-TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTP 144
Query: 364 WLDNRHVVFGSVV--EGLDVVKKLES 387
L+ RH +FG V+ E VV+ +
Sbjct: 145 HLNRRHTIFGEVIDAESQRVVEAISK 170
Score = 167 bits (424), Expect = 2e-50
Identities = 58/137 (42%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 132 RLRSDVVPKTAENFRALCTGEKGFGFKDS------------TFHRVIPNFMCQGGDFTNH 179
L + PKT NF L G K + +++ FHRVI FM QGGD T
Sbjct: 38 ALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG- 96
Query: 180 NGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVF 238
G GG G KF DE + L+ P +L+MANAGP TNGSQFFIT KT L+ RH +F
Sbjct: 97 TGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIF 153
Query: 239 GSVV--EGLDVVKKLES 253
G V+ E VV+ +
Sbjct: 154 GEVIDAESQRVVEAISK 170
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 163 bits (413), Expect = 3e-48
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK--SI 321
+ L + P NF LC +G+ + ++ FHRV+ +F+ QGGD T G GG +
Sbjct: 34 DVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTF 89
Query: 322 YGNKFEDE-NFTLKHTGPGILSMANAGPN--------------TNGSQFFITTVKTAWLD 366
G F+ E + LK G++ +AN G + TNG+QFFIT + L+
Sbjct: 90 DGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLN 149
Query: 367 NRHVVFGSVV-EGLDVVKKLESM 388
N + +FG V L + K +
Sbjct: 150 NAYTLFGKVTGHTLYNLMKFNDL 172
Score = 161 bits (409), Expect = 1e-47
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 22/140 (15%)
Query: 133 LRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGK--SIYGN 190
L + P NF LC +G+ + ++ FHRV+ +F+ QGGD T G GG + G
Sbjct: 37 LWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGADTTFDGK 92
Query: 191 KFEDE-NFTLKHTGPGILSMANAGPN--------------TNGSQFFITTVKTAWLDNRH 235
F+ E + LK G++ +AN G + TNG+QFFIT + L+N +
Sbjct: 93 PFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAY 152
Query: 236 VVFGSVV-EGLDVVKKLESM 254
+FG V L + K +
Sbjct: 153 TLFGKVTGHTLYNLMKFNDL 172
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 127 bits (321), Expect = 2e-35
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
K+ L PKT ENF +KG + + FHRVI FM QGG F +
Sbjct: 16 KLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKPT--D 69
Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
+E N LK+ ++MA P++ +QFFI +L++ + VFG
Sbjct: 70 APIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFG 128
Query: 374 SVVEGLDVVKK 384
VVEG D+V K
Sbjct: 129 KVVEGQDIVDK 139
Score = 125 bits (316), Expect = 1e-34
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
K L PKT ENF +KG + + FHRVI FM QGG F +
Sbjct: 15 IKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFE-PGLKQKPT-- 68
Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVF 238
+E N LK+ ++MA P++ +QFFI +L++ + VF
Sbjct: 69 DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVF 127
Query: 239 GSVVEGLDVVKK 250
G VVEG D+V K
Sbjct: 128 GKVVEGQDIVDK 139
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 125 bits (317), Expect = 6e-35
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
I D P+T +NF C +GF + ++ FHRVI FM QGG F +
Sbjct: 12 VIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE---PGMKQKATK 65
Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVFG 373
++E N LK+T G L+MA P++ +QFFI V +L+ + VF
Sbjct: 66 EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFA 124
Query: 374 SVVEGLDVVKK 384
VV+G+D V K
Sbjct: 125 EVVDGMDEVDK 135
Score = 123 bits (312), Expect = 3e-34
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
+ D P+T +NF C +GF + ++ FHRVI FM QGG F +
Sbjct: 11 IVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE---PGMKQKAT 64
Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR--------HVVF 238
++E N LK+T G L+MA P++ +QFFI V +L+ + VF
Sbjct: 65 KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVF 123
Query: 239 GSVVEGLDVVKK 250
VV+G+D V K
Sbjct: 124 AEVVDGMDEVDK 135
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 122 bits (309), Expect = 1e-33
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYG 323
++ L P + +NF GF + ++TFHRVIP FM QGG FT K
Sbjct: 17 ELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQKKP--N 70
Query: 324 NKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSVV 376
++E + L++T G ++MA A ++ SQFFI A+LD+ + VFG VV
Sbjct: 71 PPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV 129
Query: 377 EGLDVVKKLES 387
+G+DV K+
Sbjct: 130 KGMDVADKISQ 140
Score = 120 bits (304), Expect = 5e-33
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIY 188
+ L P + +NF GF + ++TFHRVIP FM QGG FT K
Sbjct: 16 IELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQKKP-- 69
Query: 189 GNKFEDE-NFTLKHTGPGILSMA-NAGPNTNGSQFFITTVKTAWLDNR-----HVVFGSV 241
++E + L++T G ++MA A ++ SQFFI A+LD+ + VFG V
Sbjct: 70 NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKV 128
Query: 242 VEGLDVVKKLES 253
V+G+DV K+
Sbjct: 129 VKGMDVADKISQ 140
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 120 bits (303), Expect = 5e-31
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 38/157 (24%)
Query: 264 KIVLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGD-------FTNHNGT 316
+IVL P TA NF L E+ F + R F+ Q GD F + +
Sbjct: 191 RIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246
Query: 317 GGKSI-------------YGNKFED-----ENFTLKHTGPGILSMANAG--PNTNGSQFF 356
+++ YG+ E+ + G ++MA ++ SQ F
Sbjct: 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVF 306
Query: 357 ITTVK-------TAWLDNRHVVFGSVVEGLDVVKKLE 386
+ + LD R+ VFG V + D + L+
Sbjct: 307 WLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343
Score = 117 bits (295), Expect = 7e-30
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 38/158 (24%)
Query: 129 FKGRLRSDVVPKTAENFRALCTGEKGFGFKDSTFHRVIPNFMCQGGD-------FTNHNG 181
F+ L P TA NF L E+ F + R F+ Q GD F + +
Sbjct: 190 FRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPST 245
Query: 182 TGGKSI-------------YGNKFED-----ENFTLKHTGPGILSMANAG--PNTNGSQF 221
+++ YG+ E+ + G ++MA ++ SQ
Sbjct: 246 EKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQV 305
Query: 222 FITTVK-------TAWLDNRHVVFGSVVEGLDVVKKLE 252
F + + LD R+ VFG V + D + L+
Sbjct: 306 FWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK 343
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.006
Identities = 65/414 (15%), Positives = 107/414 (25%), Gaps = 122/414 (29%)
Query: 30 ESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNI----EVMVIRNKNDDRERATQMIEKAL 85
E QY+ K L+ + F K +I E+ I D ++ L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 86 ETQENNIPDMLCLCGRIYKDKFVESQYKDKQS-LANAIHWYRKG----------FKGRLR 134
QE + + KFVE + L + I ++ + RL
Sbjct: 73 SKQEE-----------MVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 135 SDVV---------PKTAENFR-ALCT----------GEKGFGFKDSTFHRVIPNFMCQGG 174
+D + R AL G G G K + +C
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K-----TWVALDVCLSY 174
Query: 175 DFTNHNGTGGKSIY----GNKFEDENFTLKHTGPGILSMANA-----GPN--TNGSQFFI 223
I+ N E +L M PN +
Sbjct: 175 KVQCKMDFK---IFWLNLKNCNSPE---------TVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 224 TTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVLRSDV-VPKTAENFRAL 282
++ + +++L + S+ + +VL +V K F
Sbjct: 223 IKLRIHSIQAE-------------LRRL--LKSKPYENC-LLVLL-NVQNAKAWNAFNLS 265
Query: 283 C-----TGEKG---FGFKDSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLK 334
C T K F +T H + + T KS+ + L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISL-DHHSMT--LTPDE---VKSLLLKYLDCRPQDLP 319
Query: 335 H----TGPGILSMANA----GPNTNGSQFFITTVKTAWLDNRHVVFGSVVEGLD 380
T P LS+ G T + K D + S + L+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT--WDNW----KHVNCDKLTTIIESSLNVLE 367
Score = 34.8 bits (79), Expect = 0.056
Identities = 39/287 (13%), Positives = 71/287 (24%), Gaps = 94/287 (32%)
Query: 18 CLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERA 77
+ + V+ + + I W + ++N N
Sbjct: 165 WVALDVCLSYKVQCK------MDFKIFW-------------------LNLKNCNSPETV- 198
Query: 78 TQMIEKALETQENNIPDMLCLCGRIYKD--KFVESQYKDKQSLANAIHWYRKGFKGR--- 132
LE + L +I + + K + + R+ K +
Sbjct: 199 -------LEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 133 -----LRSDV-VPKTAENFRALC-----TGEKG---FGFKDSTFHRVIPNFMCQGGDFTN 178
L +V K F C T K F +T H + + T
Sbjct: 245 NCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMT--LTP 300
Query: 179 HNGTGGKSIYGNKFEDENFTLKH----TGPGILSMANA----GPNTNGSQFFITTVKTAW 230
KS+ + L T P LS+ G T + K
Sbjct: 301 DE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNW----KHVN 351
Query: 231 LDNRHVVFGSVVEGLD--VVKKL-ESMGSQSGKTSKKIVLRSDV-VP 273
D + S + L+ +K+ + + V +P
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS----------VFPPSAHIP 388
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 37.2 bits (86), Expect = 0.008
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 30/168 (17%)
Query: 3 EKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRKGFK----YKVSLST 58
EKALE + N P+ + + NAI R+ + +
Sbjct: 162 EKALEKKPKN-PEFTSGLAIAS------YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214
Query: 59 SGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSL 118
+ ++ E +++E+ALE D+L + Y+ K
Sbjct: 215 LALKLHKMREEGEEEGE-GEKLVEEALEKAPGV-TDVLRSAAKF---------YRRKDEP 263
Query: 119 ANAIHWYRKGFKGRLRSDVVPKTAE--NFRALCTGEKGFGFKDSTFHR 164
AI +K + +P A C K F + +
Sbjct: 264 DKAIELLKKALE------YIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305
Score = 32.6 bits (74), Expect = 0.24
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 26/142 (18%)
Query: 3 EKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSLAN----------AIHWYRKGFKY 52
+KALE NN + C G Y+ K + + + A+ +K +
Sbjct: 271 KKALEYIPNN-AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329
Query: 53 KVSLSTS----GNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFV 108
+L ++ D E A +K + + L ++
Sbjct: 330 NDNLFRVCSILASLH-----ALADQYEEAEYYFQKEFSKELTPVAKQLLHL------RYG 378
Query: 109 ESQYKDKQSLANAIHWYRKGFK 130
Q + AIH + +G K
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVK 400
Score = 29.5 bits (66), Expect = 2.2
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 29/100 (29%)
Query: 32 QYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERA----TQMIEKALET 87
Q + AIH + +G K I K+ ++E+ ++ + L
Sbjct: 381 QLYQMKCEDKAIHHFIEGVK---------------INQKSREKEKMKDKLQKIAKMRLSK 425
Query: 88 QENNIPDMLCLCGRIYKDKFVESQYKDKQSLANAIHWYRK 127
+ + L + + + + + A +
Sbjct: 426 NGAD-SEALHVLAFL---------QELNEKMQQADEDSER 455
Score = 28.4 bits (63), Expect = 5.6
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 10/131 (7%)
Query: 2 IEKALETQENNIP-DMLCLCGRIYKDKFVESQYKD-KQSLANAIHWYRKGFK---YKVSL 56
+ E Q M L + K Q + + L A ++ SL
Sbjct: 38 VFYRTEFQNREFKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSL 94
Query: 57 STSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQ 116
T GN + ++K E + ++
Sbjct: 95 VTWGNYAW--VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN 152
Query: 117 SLANAIHWYRK 127
A + K
Sbjct: 153 QNERAKVCFEK 163
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 116
Score = 34.0 bits (77), Expect = 0.019
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 30 ESQYKDKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQE 89
E K+ A ++Y++G + L +I + E A QM +K ET +
Sbjct: 34 ELGQKE-----EAKNYYKQGIGH---LLRGISISSKESEHTGPGWESARQMQQKMKETLQ 85
Query: 90 N 90
N
Sbjct: 86 N 86
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.0 bits (78), Expect = 0.053
Identities = 6/53 (11%), Positives = 16/53 (30%)
Query: 350 TNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKIVCF 402
T + D +F + + + + +E+ + GK +
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL 64
Score = 34.0 bits (78), Expect = 0.056
Identities = 5/50 (10%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 216 TNGSQFFITTVKTAWLDNRHVVFGSVVEGLDVVKKLESMGSQSGKTSKKI 265
T + D +F + + +++L + + + K++
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKT-TPLRRLME--AFAKRQGKEM 58
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 31.5 bits (72), Expect = 0.34
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIE-KALETQENNIP 93
+ W R F + S N +V+ NK D R +A +NNIP
Sbjct: 92 APNTFKTLDSW-RDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 30.6 bits (70), Expect = 0.53
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIE-KALETQENNIP 93
D QS N +W +K F Y + + +++ NK D ER E +A + P
Sbjct: 91 DSQSFQNLSNW-KKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.58
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 9/31 (29%)
Query: 248 VKKLESMGSQSGKTSKKIVLRSDVVPKTAEN 278
+KKL++ S K+ D P A
Sbjct: 22 LKKLQA--------SLKL-YADDSAPALAIK 43
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 30.5 bits (69), Expect = 0.66
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 190 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 239
+ + E L+ + L+ + G + G + + LD + +V G
Sbjct: 8 HSMDIEFVDLEGSDAHDLAYS-LGASL-GERL---HQEVPDLDLKALVDG 52
Score = 30.5 bits (69), Expect = 0.66
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 324 NKFEDENFTLKHTGPGILSMANAGPNTNGSQFFITTVKTAWLDNRHVVFG 373
+ + E L+ + L+ + G + G + + LD + +V G
Sbjct: 8 HSMDIEFVDLEGSDAHDLAYS-LGASL-GERL---HQEVPDLDLKALVDG 52
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.5 bits (69), Expect = 0.68
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 41 NAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIPDMLCLCG 100
+Y +S+ E+ + KN + ++A ++ L+ NN+ D L C
Sbjct: 37 RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV-DCLEACA 95
Query: 101 RIYKDKFVESQYKDKQSLANAIHWYRK 127
+ + Q KD A+ Y K
Sbjct: 96 EMQVCR---GQEKD------ALRMYEK 113
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.71
Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 30/87 (34%)
Query: 2 IEKALETQENNIPDMLCLCGRIYKDKFVESQYKDKQSL----ANAIH-WYRKGFKYKVSL 56
I K E Q + + D + +Q + W ++ +
Sbjct: 87 IRKWREEQRKRLQE---------LD---AASKVMEQEWREKAKKDLEEWNQR---QSEQV 131
Query: 57 STSGNIEVMVIRNKNDDRERATQMIEK 83
+NK ++R ++
Sbjct: 132 E----------KNKINNRIADKAFYQQ 148
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 30.2 bits (68), Expect = 0.84
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERATQMIEKALETQENNIP 93
+ +L A W + L S N ++++ NK D + ++E Q+NN+
Sbjct: 128 NSNTLDRAKTWVNQ-------LKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL 179
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 27/94 (28%)
Query: 217 NGSQFFITTVKTAWLDNRHVVF-------GS------VVE----GLDVVKKLESMGSQSG 259
+G + ++ A V GS VV GL V+ + +G ++
Sbjct: 155 SGRKVLVSMAPIA---THFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRAS 211
Query: 260 KTSKKIVLRSDV-VPKTAENFRALCTGEKGFGFK 292
T + +V V + L G G
Sbjct: 212 GTLE-VVF-DRCPVRA--DEL--LERGPVGARRD 239
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKND--DRERATQMIE-KALETQENN 91
+ S N W R F ++++ +++ NK D + ++ + L +
Sbjct: 93 NASSFENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGD 151
Query: 92 IP 93
IP
Sbjct: 152 IP 153
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 28.8 bits (65), Expect = 2.6
Identities = 5/61 (8%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKND-DRERATQMIE-KALETQENNI 92
D+ S + + + + ++ +++ R +AL
Sbjct: 84 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143
Query: 93 P 93
Sbjct: 144 S 144
>3nja_A Probable ggdef family protein; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.37A {Chromobacterium violaceum}
Length = 125
Score = 27.1 bits (61), Expect = 5.9
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 72 DDRERATQMIEKALETQE 89
DDR R + +++ +
Sbjct: 61 DDRARVRRELDRHVLGDR 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 35 DKQSLANAIHWYRKGFKYKVSLSTSGNIEVMVIRNKNDDRERA 77
KQSL Y+ + K + +I VM++ NK D+ +R
Sbjct: 91 SKQSLEELGPIYKLIVQIK---GSVEDIPVMLVGNKCDETQRE 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,016,688
Number of extensions: 354000
Number of successful extensions: 1042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 105
Length of query: 403
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 307
Effective length of database: 4,021,377
Effective search space: 1234562739
Effective search space used: 1234562739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)