Query psy4430
Match_columns 84
No_of_seqs 124 out of 1000
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 16:53:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1017|consensus 99.9 2.3E-25 4.9E-30 159.1 2.8 83 1-83 73-158 (267)
2 COG0035 Upp Uracil phosphoribo 99.9 2E-24 4.4E-29 153.6 6.8 72 11-83 21-93 (210)
3 PLN02541 uracil phosphoribosyl 99.9 5.4E-24 1.2E-28 154.3 7.1 81 3-84 40-126 (244)
4 PF14681 UPRTase: Uracil phosp 99.9 2.2E-23 4.7E-28 147.0 6.3 81 4-84 6-91 (207)
5 TIGR01091 upp uracil phosphori 99.9 1.3E-22 2.8E-27 143.0 7.6 80 3-83 8-91 (207)
6 PRK00129 upp uracil phosphorib 99.9 3.8E-22 8.2E-27 140.7 7.4 79 4-83 11-93 (209)
7 KOG4203|consensus 99.4 6.8E-13 1.5E-17 103.7 4.7 81 3-83 273-356 (473)
8 TIGR01203 HGPRTase hypoxanthin 74.1 3.5 7.6E-05 28.0 2.6 23 60-82 26-48 (166)
9 PRK05205 bifunctional pyrimidi 54.6 12 0.00027 25.3 2.4 46 15-82 8-53 (176)
10 PRK15423 hypoxanthine phosphor 45.4 99 0.0021 21.2 6.0 47 15-82 10-56 (178)
11 PTZ00271 hypoxanthine-guanine 33.1 46 0.001 23.7 2.6 51 15-82 29-79 (211)
12 PF10918 DUF2718: Protein of u 33.1 27 0.00058 23.7 1.3 19 18-36 2-20 (140)
13 PF05678 VQ: VQ motif; InterP 31.5 35 0.00075 17.3 1.3 15 13-27 9-23 (31)
14 KOG0713|consensus 31.5 68 0.0015 24.8 3.4 30 7-38 43-72 (336)
15 PHA03057 Hypothetical protein; 29.4 39 0.00085 22.9 1.6 19 18-36 2-20 (146)
16 PF02196 RBD: Raf-like Ras-bin 29.3 56 0.0012 19.1 2.2 23 60-83 10-32 (71)
17 PF04260 DUF436: Protein of un 28.6 39 0.00084 23.8 1.5 23 60-82 88-110 (172)
18 PLN02369 ribose-phosphate pyro 26.9 62 0.0013 24.1 2.5 23 60-82 151-173 (302)
19 PF06577 DUF1134: Protein of u 25.5 43 0.00093 23.3 1.3 15 59-74 126-140 (160)
20 PTZ00149 hypoxanthine phosphor 24.2 74 0.0016 23.2 2.4 23 60-82 81-103 (241)
21 COG5400 Uncharacterized protei 24.2 47 0.001 23.7 1.3 15 59-74 171-185 (205)
22 KOG2591|consensus 22.2 81 0.0017 26.4 2.5 31 30-69 149-181 (684)
23 COG4475 Uncharacterized protei 21.0 82 0.0018 22.1 2.0 25 60-84 93-117 (180)
24 PF11202 PRTase_1: Phosphoribo 20.7 64 0.0014 24.1 1.5 17 59-75 85-101 (257)
25 PF10751 DUF2535: Protein of u 20.7 72 0.0016 19.9 1.5 23 14-36 52-74 (83)
No 1
>KOG1017|consensus
Probab=99.91 E-value=2.3e-25 Score=159.14 Aligned_cols=83 Identities=47% Similarity=0.672 Sum_probs=81.1
Q ss_pred CCceeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeecCCeeEEeecccChhhHHH
Q psy4430 1 MNVKVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQV 77 (84)
Q Consensus 1 ~~~~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~~~i~~VpILRAGl~m~~~ 77 (84)
||+|+..+.| ||+|+++||.|+.|||.||.+||.|++|||.+++|+||.|.+|+|.++.+.-|+|+|.|||++|++|
T Consensus 73 ~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~RSGEAMEqg 152 (267)
T KOG1017|consen 73 CNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSICRSGEAMEQG 152 (267)
T ss_pred hHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEEechHHHHHH
Confidence 6899999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcccc
Q psy4430 78 QRGPRY 83 (84)
Q Consensus 78 ~~~~~~ 83 (84)
++++||
T Consensus 153 LRdCCR 158 (267)
T KOG1017|consen 153 LRDCCR 158 (267)
T ss_pred HHHHHH
Confidence 999997
No 2
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=2e-24 Score=153.62 Aligned_cols=72 Identities=24% Similarity=0.181 Sum_probs=68.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeec-CCeeEEeecccChhhHHHHhcccc
Q psy4430 11 FPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRSGEAMEQVQRGPRY 83 (84)
Q Consensus 11 d~~T~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~-~~i~~VpILRAGl~m~~~~~~~~~ 83 (84)
|++|++++||++++||++||+|||+++||+++++|+||++ +++|.++. +++|+|||||||++|++|++++|-
T Consensus 21 dk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILRAGl~m~~gl~~~~P 93 (210)
T COG0035 21 DKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILRAGLGMVEGLLKLIP 93 (210)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEeeccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999 58999996 559999999999999999999874
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=99.90 E-value=5.4e-24 Score=154.25 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=70.4
Q ss_pred ceeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeeeeeec--CCeeEEeecccChhhHH
Q psy4430 3 VKVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQ-LPFSKMDIVTPTGATYHGLKYE--RGNCGVSVIRSGEAMEQ 76 (84)
Q Consensus 3 ~~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~-lp~~~~~V~TP~g~~~~g~~~~--~~i~~VpILRAGl~m~~ 76 (84)
.+++.++| |++|++.+||+|++||++||+|||+++ ||+++++|+||+|. +.+..+. +++|+|||||||++|++
T Consensus 40 p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~-~~~~~~~~~~~i~~V~ILRAGl~m~~ 118 (244)
T PLN02541 40 PLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGV-ADVEFIDPREPVAVVPILRAGLVLLE 118 (244)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCe-EEEEeecCCCcEEEEeEeCCcHhHHH
Confidence 34555666 999999999999999999999999988 99999999999996 4555554 45999999999999999
Q ss_pred HHhccccC
Q psy4430 77 VQRGPRYD 84 (84)
Q Consensus 77 ~~~~~~~~ 84 (84)
|+++++.+
T Consensus 119 g~~~~~P~ 126 (244)
T PLN02541 119 HASSVLPA 126 (244)
T ss_pred HHHhhCCC
Confidence 99998753
No 4
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=99.89 E-value=2.2e-23 Score=146.98 Aligned_cols=81 Identities=27% Similarity=0.307 Sum_probs=70.1
Q ss_pred eeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCC-CCCeeeEEeCCCCceeeeeeec-CCeeEEeecccChhhHHHH
Q psy4430 4 KVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQ-LPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRSGEAMEQVQ 78 (84)
Q Consensus 4 ~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~-lp~~~~~V~TP~g~~~~g~~~~-~~i~~VpILRAGl~m~~~~ 78 (84)
+++.+++ |++|++.+||+|++||+++|+|||+++ +|+++.+|+||+|..+.|.... +++|+|||||||++|++|+
T Consensus 6 ~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m~~~~ 85 (207)
T PF14681_consen 6 LLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLPMLEGF 85 (207)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHHHHHHH
Confidence 3444445 999999999999999999999999998 9999999999999988886655 4999999999999999999
Q ss_pred hccccC
Q psy4430 79 RGPRYD 84 (84)
Q Consensus 79 ~~~~~~ 84 (84)
++++.+
T Consensus 86 ~~~~p~ 91 (207)
T PF14681_consen 86 REVFPD 91 (207)
T ss_dssp HHHSTT
T ss_pred HHhCCC
Confidence 998753
No 5
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.88 E-value=1.3e-22 Score=143.02 Aligned_cols=80 Identities=18% Similarity=0.068 Sum_probs=71.8
Q ss_pred ceeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeec-CCeeEEeecccChhhHHHH
Q psy4430 3 VKVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRSGEAMEQVQ 78 (84)
Q Consensus 3 ~~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~-~~i~~VpILRAGl~m~~~~ 78 (84)
.+++.++| |++|++.+||+|++||+++|+|||++++|+++.+|+||+|. +.|..+. +++|+|||||||.+|++++
T Consensus 8 p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~-~~~~~~~~~~i~~V~ILrgg~~~~~~l 86 (207)
T TIGR01091 8 PLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGE-TEGGRILGKKIVLVPILRAGLGMVDGV 86 (207)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCc-EEEeEecCCcEEEEEEeCCcHHHHHHH
Confidence 45556666 99999999999999999999999999999999999999997 4666665 6799999999999999999
Q ss_pred hcccc
Q psy4430 79 RGPRY 83 (84)
Q Consensus 79 ~~~~~ 83 (84)
++++.
T Consensus 87 ~~~l~ 91 (207)
T TIGR01091 87 LKLIP 91 (207)
T ss_pred HHhCC
Confidence 98874
No 6
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.87 E-value=3.8e-22 Score=140.73 Aligned_cols=79 Identities=20% Similarity=0.134 Sum_probs=72.2
Q ss_pred eeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeec-CCeeEEeecccChhhHHHHh
Q psy4430 4 KVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIRSGEAMEQVQR 79 (84)
Q Consensus 4 ~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~-~~i~~VpILRAGl~m~~~~~ 79 (84)
+++.++| |++|++.+||+|++||+++|+|||+++||+++.+|+||+| .++|..+. +++|+|||+|||++|.++++
T Consensus 11 ~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~IlrgG~~~~~~l~ 89 (209)
T PRK00129 11 LIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRAGLGMVDGVL 89 (209)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCCCHHHHHHHH
Confidence 4455555 9999999999999999999999999999999999999999 58999886 68999999999999999999
Q ss_pred cccc
Q psy4430 80 GPRY 83 (84)
Q Consensus 80 ~~~~ 83 (84)
+.+.
T Consensus 90 ~~l~ 93 (209)
T PRK00129 90 KLIP 93 (209)
T ss_pred HhCC
Confidence 8764
No 7
>KOG4203|consensus
Probab=99.36 E-value=6.8e-13 Score=103.68 Aligned_cols=81 Identities=31% Similarity=0.454 Sum_probs=76.8
Q ss_pred ceeeeccc---CCCCCchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeecCCeeEEeecccChhhHHHHh
Q psy4430 3 VKVVRLQP---FPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQVQR 79 (84)
Q Consensus 3 ~~~~~~~~---d~~T~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~~~i~~VpILRAGl~m~~~~~ 79 (84)
.++++++| |+.|++.+|.+|++++++++.++++..+|+.+..+.||.|..+.|.....++|+|+|+|||..|+.+++
T Consensus 273 ~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~i~gv~i~r~g~~~~~alr 352 (473)
T KOG4203|consen 273 NQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQICGVSIPRSGESMETALR 352 (473)
T ss_pred cccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccchhccCCCCcchhHHHHHHH
Confidence 47788888 999999999999999999999999999999999999999998999988899999999999999999999
Q ss_pred cccc
Q psy4430 80 GPRY 83 (84)
Q Consensus 80 ~~~~ 83 (84)
.+|+
T Consensus 353 ~~~~ 356 (473)
T KOG4203|consen 353 AACK 356 (473)
T ss_pred HHcC
Confidence 9986
No 8
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=74.08 E-value=3.5 Score=27.96 Aligned_cols=23 Identities=4% Similarity=-0.203 Sum_probs=19.6
Q ss_pred CCeeEEeecccChhhHHHHhccc
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+++++|+|+|+|..|...+.+.+
T Consensus 26 ~~~vvv~i~~GG~~~a~~l~~~L 48 (166)
T TIGR01203 26 KPLVLLCVLKGSFPFFADLIRYI 48 (166)
T ss_pred CCeEEEEEccCCHHHHHHHHHhc
Confidence 35789999999999999887754
No 9
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=54.60 E-value=12 Score=25.29 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=31.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeecCCeeEEeecccChhhHHHHhccc
Q psy4430 15 PVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 15 ~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+..++...+.+|+.-+.. .|.|. +++++|+|+|+|..+...+.+.+
T Consensus 8 s~~~i~~~i~~la~~i~~-------------------~~~~~---~~~viv~il~gG~~~a~~La~~L 53 (176)
T PRK05205 8 DAEALRRALTRIAHEIIE-------------------RNKGL---DNLVLVGIKTRGVWLAERLAERL 53 (176)
T ss_pred CHHHHHHHHHHHHHHHHH-------------------HcCCC---CCeEEEEEccCCHHHHHHHHHHH
Confidence 456777777777766632 12221 35789999999999998887654
No 10
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=45.42 E-value=99 Score=21.24 Aligned_cols=47 Identities=15% Similarity=-0.010 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeecCCeeEEeecccChhhHHHHhccc
Q psy4430 15 PVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 15 ~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+..++...+++|+.-+.+.- +. ..+++++|+|+|.|..|..-+.+.+
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~-~~--------------------~~~~~vvvgI~~Gg~~fa~~L~~~L 56 (178)
T PRK15423 10 PEAEIKARIAELGRQITERY-KD--------------------SGSDMVLVGLLRGSFMFMADLCREV 56 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHh-cc--------------------cCCCeEEEEEecCChHHHHHHHHHh
Confidence 56788888888888776521 11 1234788999999999988776643
No 11
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=33.13 E-value=46 Score=23.71 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhCCCCCeeeEEeCCCCceeeeeeecCCeeEEeecccChhhHHHHhccc
Q psy4430 15 PVAGDVLDLLETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 15 ~~~~Fr~~~~rl~~lL~~eAl~~lp~~~~~V~TP~g~~~~g~~~~~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+..+....+++|+..+.+.- +.+. +. + .+++++|.|||.|..|..-+.+.+
T Consensus 29 s~e~I~~~i~~LA~~I~~~~-~~~~--------~~-----~---~~~~vivgVlkGg~~fa~dL~r~L 79 (211)
T PTZ00271 29 TQEQVWAATAKCAKKIAEDY-RSFK--------LT-----T---ENPLYLLCVLKGSFIFTADLARFL 79 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHh-hhcc--------cc-----C---CCCeEEEEEcCCCHHHHHHHHHHh
Confidence 56667777788877776421 1110 00 0 246789999999999988776544
No 12
>PF10918 DUF2718: Protein of unknown function (DUF2718); InterPro: IPR020356 This entry contains proteins with no known function.
Probab=33.06 E-value=27 Score=23.66 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q psy4430 18 GDVLDLLETIRLVIEESLN 36 (84)
Q Consensus 18 ~Fr~~~~rl~~lL~~eAl~ 36 (84)
.|+||++||..+++|-.-+
T Consensus 2 LcIFY~sRLcNLiIysiYs 20 (140)
T PF10918_consen 2 LCIFYLSRLCNLIIYSIYS 20 (140)
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 3689999999999886543
No 13
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=31.52 E-value=35 Score=17.33 Aligned_cols=15 Identities=0% Similarity=-0.296 Sum_probs=12.6
Q ss_pred CCCchhHHHHHHHHH
Q psy4430 13 EKPVAGDVLDLLETI 27 (84)
Q Consensus 13 ~T~~~~Fr~~~~rl~ 27 (84)
+|+..+||..+.+|.
T Consensus 9 ~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 9 HTDPSNFRALVQRLT 23 (31)
T ss_pred EeCHHHHHHHHHHhH
Confidence 478899999998875
No 14
>KOG0713|consensus
Probab=31.52 E-value=68 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=23.2
Q ss_pred ecccCCCCCchhHHHHHHHHHHHHHHHHhCCC
Q psy4430 7 RLQPFPEKPVAGDVLDLLETIRLVIEESLNQL 38 (84)
Q Consensus 7 ~~~~d~~T~~~~Fr~~~~rl~~lL~~eAl~~l 38 (84)
.+|||||++..+=-.-+.+|+. +||.|++=
T Consensus 43 k~HPDkNpddp~A~e~F~~in~--AYEVLsDp 72 (336)
T KOG0713|consen 43 KYHPDKNPDDPNANEKFKEINA--AYEVLSDP 72 (336)
T ss_pred HhCCCCCCCCHHHHHHHHHHHH--HHHHhcCH
Confidence 3689999988777777777775 78888874
No 15
>PHA03057 Hypothetical protein; Provisional
Probab=29.39 E-value=39 Score=22.88 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q psy4430 18 GDVLDLLETIRLVIEESLN 36 (84)
Q Consensus 18 ~Fr~~~~rl~~lL~~eAl~ 36 (84)
.++||++||..+++|-.-+
T Consensus 2 LcIFYlaRLcNliIyslYs 20 (146)
T PHA03057 2 LCIFYLARLCNLIIYSLYS 20 (146)
T ss_pred eehhhHHHHHHHHHHHHHH
Confidence 3789999999998885543
No 16
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=29.31 E-value=56 Score=19.12 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=17.4
Q ss_pred CCeeEEeecccChhhHHHHhcccc
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPRY 83 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~~ 83 (84)
++-+.|++ |.|.+.-+.+..+|+
T Consensus 10 ~q~t~V~v-rpg~ti~d~L~~~~~ 32 (71)
T PF02196_consen 10 GQRTVVQV-RPGMTIRDALSKACK 32 (71)
T ss_dssp TEEEEEEE--TTSBHHHHHHHHHH
T ss_pred CCEEEEEE-cCCCCHHHHHHHHHH
Confidence 56666655 999999999988875
No 17
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=28.58 E-value=39 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=15.1
Q ss_pred CCeeEEeecccChhhHHHHhccc
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
..+.+||++.||-+|....-+-.
T Consensus 88 e~V~VvP~~~AGGs~a~~Ay~~f 110 (172)
T PF04260_consen 88 EEVTVVPVPHAGGSMATAAYEHF 110 (172)
T ss_dssp -EEE-B-BTTBB-HHHHHHHHHS
T ss_pred ceEEEEccCCCCcHHHHHHHHhc
Confidence 67889999999999987765443
No 18
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=26.85 E-value=62 Score=24.10 Aligned_cols=23 Identities=17% Similarity=-0.124 Sum_probs=20.5
Q ss_pred CCeeEEeecccChhhHHHHhccc
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+++++|++.++|..+.+++.+.+
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l 173 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKL 173 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHc
Confidence 56899999999999999998765
No 19
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.48 E-value=43 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=12.1
Q ss_pred cCCeeEEeecccChhh
Q psy4430 59 ERGNCGVSVIRSGEAM 74 (84)
Q Consensus 59 ~~~i~~VpILRAGl~m 74 (84)
..++++||| |+|.++
T Consensus 126 ~~~ivl~PI-R~GvG~ 140 (160)
T PF06577_consen 126 NGDIVLAPI-RTGVGA 140 (160)
T ss_pred eCCEEEEEe-ecCcce
Confidence 488999998 888764
No 20
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=24.24 E-value=74 Score=23.20 Aligned_cols=23 Identities=0% Similarity=-0.110 Sum_probs=18.3
Q ss_pred CCeeEEeecccChhhHHHHhccc
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPR 82 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~ 82 (84)
+++++|.||+.|..|..-+.+.+
T Consensus 81 ~~~vilgILkGg~~FaadL~~~L 103 (241)
T PTZ00149 81 EELHILCILKGSRGFFSALVDYL 103 (241)
T ss_pred CCeEEEEECCCCHHHHHHHHHHH
Confidence 46889999999999887765543
No 21
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.20 E-value=47 Score=23.71 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.4
Q ss_pred cCCeeEEeecccChhh
Q psy4430 59 ERGNCGVSVIRSGEAM 74 (84)
Q Consensus 59 ~~~i~~VpILRAGl~m 74 (84)
.++|++||| |+|.+.
T Consensus 171 ~~~v~lvPI-RtGiGa 185 (205)
T COG5400 171 AENVTLVPI-RTGIGA 185 (205)
T ss_pred cCceEEEEe-eeccce
Confidence 388999998 998764
No 22
>KOG2591|consensus
Probab=22.24 E-value=81 Score=26.43 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=20.5
Q ss_pred HHHHHhCCCCCeeeEEeCCCCceeeeeee--cCCeeEEeecc
Q psy4430 30 VIEESLNQLPFSKMDIVTPTGATYHGLKY--ERGNCGVSVIR 69 (84)
Q Consensus 30 L~~eAl~~lp~~~~~V~TP~g~~~~g~~~--~~~i~~VpILR 69 (84)
||.|+|+..|..+++ . .|.++ ..+=|+| |||
T Consensus 149 LI~Evlresp~VqvD------e--kgekVrp~~kRcIv-ilR 181 (684)
T KOG2591|consen 149 LIVEVLRESPNVQVD------E--KGEKVRPNHKRCIV-ILR 181 (684)
T ss_pred HHHHHHhcCCCceec------c--CccccccCcceeEE-EEe
Confidence 779999998865543 1 24433 4667777 777
No 23
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=82 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=19.7
Q ss_pred CCeeEEeecccChhhHHHHhccccC
Q psy4430 60 RGNCGVSVIRSGEAMEQVQRGPRYD 84 (84)
Q Consensus 60 ~~i~~VpILRAGl~m~~~~~~~~~~ 84 (84)
..+.+||.+-||-+|.....+..+|
T Consensus 93 e~VsvvP~~hAGGs~a~~Afq~mkd 117 (180)
T COG4475 93 EIVSVVPVLHAGGSMATYAFQQMKD 117 (180)
T ss_pred eeEEeecccccCcHHHHHHHHHcCC
Confidence 4477999999999998877665554
No 24
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=20.71 E-value=64 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.2
Q ss_pred cCCeeEEeecccChhhH
Q psy4430 59 ERGNCGVSVIRSGEAME 75 (84)
Q Consensus 59 ~~~i~~VpILRAGl~m~ 75 (84)
..++++||.-|||-|.=
T Consensus 85 g~~~vLVSLaRAGtPiG 101 (257)
T PF11202_consen 85 GQPIVLVSLARAGTPIG 101 (257)
T ss_pred CCCeEEEEeeccCCcHH
Confidence 36799999999998753
No 25
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=20.71 E-value=72 Score=19.90 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=19.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhC
Q psy4430 14 KPVAGDVLDLLETIRLVIEESLN 36 (84)
Q Consensus 14 T~~~~Fr~~~~rl~~lL~~eAl~ 36 (84)
-..-.||.|++|...|=-||++=
T Consensus 52 ~~vYSFreYlKr~lKW~dYe~iy 74 (83)
T PF10751_consen 52 RKVYSFREYLKRVLKWPDYEQIY 74 (83)
T ss_pred CceeeHHHHHHHhcCcHHHHHHh
Confidence 34568999999999999998864
Done!