RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4430
(84 letters)
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 61.5 bits (149), Expect = 2e-13
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
IRL+IEE+LN+LPF K ++ TP +YHG+ + CGVS++R+GE+ME
Sbjct: 67 RLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES 118
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P;
3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 51.8 bits (124), Expect = 6e-10
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E L+ E LP +++I TP + + + ++R+G M
Sbjct: 35 EVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIPILRAGIGMVD 86
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 51.5 bits (123), Expect = 1e-09
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E L+ E+ L ++++ TP T ++ V ++R+G M
Sbjct: 47 EITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVPILRAGLVMAD 98
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 49.9 bits (119), Expect = 3e-09
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E L+ E LP + + TP + + V V+R+G M
Sbjct: 42 EITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSD 93
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 49.1 bits (117), Expect = 6e-09
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E +++ E+L + + ++ T G E V ++R+G + +
Sbjct: 33 ELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLE 84
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 48.3 bits (115), Expect = 1e-08
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E L+ E++ L + + TP + + V+++R+G M +
Sbjct: 34 EVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVE 85
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 42.6 bits (100), Expect = 1e-06
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
E L+ E+ L K+ I G + V ++R+G M
Sbjct: 34 EVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMD 85
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 40.4 bits (94), Expect = 1e-05
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGN--CGVSVIRSGEAMEQ 76
R++ E N L + +++ TP G G+ N ++++R+ + +
Sbjct: 34 RLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVE 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.10
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 29/75 (38%)
Query: 10 PFPEKPVAGDVLDLLETIRLVIEESLNQLPFSKMDIV-----TPTGATYHGLKYERGNCG 64
P E+ V +LD L I EE+L ++ D++ A +
Sbjct: 539 PKYERLV-NAILDFLPKI----EENLICSKYT--DLLRIALMAEDEAIFE---------- 581
Query: 65 VSVIRSGEAMEQVQR 79
EA +QVQR
Sbjct: 582 -------EAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 4.4
Identities = 3/15 (20%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 16 VAGDVLDLLETIRLV 30
+A V+ + + +V
Sbjct: 1773 LAD-VMSIESLVEVV 1786
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente
eukaryotic structural genomics, CESG, structural
genomics, function; HET: MSE; 1.92A {Danio rerio}
Length = 224
Score = 24.3 bits (52), Expect = 6.4
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 19 DVLDLLETIRLVIEESLNQLPFSKM 43
+DL + +++++SL FS+
Sbjct: 32 GSVDLEKVSSVIVDQSLKDQVFSRE 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.398
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,292,427
Number of extensions: 67089
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 16
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)