RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4430
         (84 letters)



>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
          [TaxId: 2336]}
          Length = 210

 Score = 45.4 bits (107), Expect = 7e-08
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
          E   L+  E+   L   ++++ TP   T      ++    V ++R+G  M  
Sbjct: 36 EITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVPILRAGLVMAD 87


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
          [TaxId: 1394]}
          Length = 208

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
          E   L+  E    LP  +++I TP       +   +    + ++R+G  M  
Sbjct: 34 EVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIPILRAGIGMVD 85


>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii
          [TaxId: 5811]}
          Length = 224

 Score = 39.6 bits (92), Expect = 9e-06
 Identities = 26/52 (50%), Positives = 38/52 (73%)

Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
            IRL+IEE+LN+LPF K ++ TP   +YHG+ +    CGVS++R+GE+ME 
Sbjct: 48 RLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES 99


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus
          thermophilus [TaxId: 274]}
          Length = 208

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQ 76
          E   L+  E++  L   +  + TP       +   +    V+++R+G  M +
Sbjct: 34 EVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVE 85


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 215

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 25 ETIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGN--CGVSVIRSGEAMEQ 76
             R++  E  N L +  +++ TP G    G+     N    ++++R+   + +
Sbjct: 33 RLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVE 86


>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
          UvrB {Thermus thermophilus [TaxId: 274]}
          Length = 174

 Score = 23.1 bits (49), Expect = 5.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 14 KPVAGDVLDLLETIRLVIE 32
          KP    +LDL+E IR    
Sbjct: 11 KPTENQILDLMEGIRERAA 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,563
Number of extensions: 12099
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)