BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4431
         (250 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E8T|A Chain A, Crystal Structure Of Epiphyas Postvittana Takeout 1
 pdb|3E8W|A Chain A, Crystal Structure Of Epiphyas Postvittana Takeout 1
          Length = 220

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 16/214 (7%)

Query: 28  PCKRNSSDLNSCVIDIIKSLKPRFHQGXXXXXXXXXXXXXXXXVTLDSSGSQVVNFKANF 87
           P ++ + + ++C+    +   P F  G                   D SG Q        
Sbjct: 4   PVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFDLSGLQF-----TL 58

Query: 88  RNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPIRGNGKCSGN 147
           +  KL G K   + +VK D K + + +  HL    +   Y   G++L+LPI G+G+    
Sbjct: 59  KEGKLKGLKGAVIDNVKWDLKKKNIEVDFHLDAT-VKGHYTAGGRILILPITGDGQMKLK 117

Query: 148 FTDVEADVLFSGKFYEK----NHKQFVKLDATPKVSIKLGNSEMHFDNLFNGNEELGRST 203
             ++   ++ S +  +     +H  F K   T  V     N++    NLFNGN+EL  + 
Sbjct: 118 LKNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVK---DNAQFGLTNLFNGNKELSDTM 174

Query: 204 NNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNV 237
             FLN NW+ VS E    V +  +    ++FKN+
Sbjct: 175 LTFLNQNWKQVSEEFGKPVMEAAAK---KIFKNI 205


>pdb|2P0N|A Chain A, Nmb1532 Protein From Neisseria Meningitidis, Unknown
           Function
 pdb|2P0N|B Chain B, Nmb1532 Protein From Neisseria Meningitidis, Unknown
           Function
          Length = 172

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 207 LNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYSVDQLLPE 249
           L+DNW  VSAE   L  D       + FK  +  Y V   + E
Sbjct: 102 LHDNWAAVSAEFAKLEADNAYVPDEEAFKRFVAGYDVHLAIEE 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,941,000
Number of Sequences: 62578
Number of extensions: 279199
Number of successful extensions: 799
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 3
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)