BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4431
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VBV3|TAKT_DROME Protein takeout OS=Drosophila melanogaster GN=to PE=2 SV=1
Length = 249
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 17/241 (7%)
Query: 5 FCYVLFLVLTVQIYAANLPSYIKPCKRNSSDLNSCVIDIIKSL-KPRFHQGLPELKIPIL 63
F VL L+++V A P KPCK + C++ + +L +G P L + L
Sbjct: 6 FAVVLCLLVSVD---AKFPEDPKPCKYGDGE---CIMKLCNTLFSENSAEGDPGLNLMQL 59
Query: 64 EPLNLP-LVTLDSSGSQVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVY 122
+PL + +V S V F + L+G K D + VK+ GR L+ + V
Sbjct: 60 DPLKVDRMVISQGESSSPVGITLTFTDNLLYGIK--DQRIVKVKGFGRDLTAKHEVKIVT 117
Query: 123 MT----SDYDMNGKVLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKNHKQFVKLDATP-K 177
T Y++ GKVL+LPI G G+ + +V A V FSGK KN + + LD T K
Sbjct: 118 KTFSLVGPYNIQGKVLILPISGTGQSNMTMVNVRAIVSFSGKPLVKNGETY--LDVTDLK 175
Query: 178 VSIKLGNSEMHFDNLFNGNEELGRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNV 237
+++K +S HF NLFNG++ LG + N FLN+N E + E + + + + K V
Sbjct: 176 ITMKPESSHYHFSNLFNGDKALGDNMNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGV 235
Query: 238 L 238
Sbjct: 236 F 236
>sp|O76879|CCCP_DROME Circadian clock-controlled protein OS=Drosophila melanogaster
GN=anon-3B1.2 PE=2 SV=2
Length = 260
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 21/233 (9%)
Query: 19 AANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSG- 77
+ PS +K CK SC++ ++ F G+PE ++ LEP+ L + ++S G
Sbjct: 26 SEGFPSPLKRCKLQD---ESCLLAQAQTFFQAFKNGIPERQVAALEPIALGTMFIESGGH 82
Query: 78 SQVVNFKANFRNMKLHG-AKTLDVKDVKLDYKGR----KLSMVLHLPKVYMTSDYDMNGK 132
S+ + FK + KL+ A ++ VK +K K KL+++L P++ + + YD++GK
Sbjct: 83 SESIKFKLTMSDAKLYNLANSMMVKSLKGFTKDLTRPLKLTLLLDNPELEVRAKYDVDGK 142
Query: 133 VLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKN--HKQFVKLDATPKVSIKLGNSEMHFD 190
+L+LPI G + DV V + + +++ H D IK G HFD
Sbjct: 143 LLILPIVSKGDLTIRLNDVHTKVWITAEPVKRSDGHTYLNITDYKTATKIKGG----HFD 198
Query: 191 --NLFNGNEELGRSTNNFLNDNWELVSAEVIPLVQDTV----STISYQLFKNV 237
NLFN N+EL ST LN W ++ +V P + + S I L+ N+
Sbjct: 199 LSNLFNDNKELRDSTLKVLNQEWSTLALDVQPKINEACAKAFSAIVQSLWANI 251
>sp|Q24764|CCCP_DROYA Circadian clock-controlled protein OS=Drosophila yakuba
GN=anon-3B1.2 PE=3 SV=1
Length = 260
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Query: 19 AANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSG- 77
+ PS +K CK SC++ ++ F +G+PE ++ LEP++L + ++S G
Sbjct: 26 SQGFPSPLKRCKLQE---ESCLVAQAQTFFQAFQKGIPERQVAALEPIDLGTMRIESGGH 82
Query: 78 SQVVNFKANFRNMKLHG-AKTLDVKDVKLDYKGRKLSMV----LHLPKVYMTSDYDMNGK 132
S+ + FK + KL+ A ++ VK +K K + + P++ + + YD++GK
Sbjct: 83 SESLKFKLVMSDAKLYNLANSVVVKSLKGFTKDLTKPLKLTLLMDTPELEVRAKYDVDGK 142
Query: 133 VLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKN--HKQFVKLDATPKVSIKLGNSEMHFD 190
+L+LPI G + +V+ + + +++ H D IK G HFD
Sbjct: 143 LLILPIVSKGDLTIRMNEVQTKRRITAEPVKRSDGHSYLNITDYKTITKIKGG----HFD 198
Query: 191 --NLFNGNEELGRSTNNFLNDNWELVSAEVIPLVQDTVS 227
NLF+ N+EL ST LN W ++ +V P + + S
Sbjct: 199 LSNLFDDNKELRESTLKVLNQEWNTLALDVQPKINEACS 237
>sp|P04283|ENV17_DROME Retrovirus-related Env polyprotein from copia-like transposable
element 17.6 OS=Drosophila melanogaster GN=env PE=4 SV=1
Length = 456
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 39 CVIDIIKSLKP--RFHQGLPELKIPILEPLNLPLVTLDSSGSQVVNFKANFRNMKLHGAK 96
CV +IIK LKP F + I +EP + L + S N + +F N+K+ G K
Sbjct: 275 CVTNIIKHLKPICNFESIHTDEIIKYIEPNTIVTWNL-TQTSLKQNCQNSFNNIKIKGNK 333
Query: 97 TLDVKDVKLDYKGRKLSMVLHLPKVYMTSDY 127
+ V K++ LS L P++ +T Y
Sbjct: 334 MIKVTQCKIEINSIILSENLFKPEIDLTPLY 364
>sp|A3CSZ5|MTD_METMJ F420-dependent methylenetetrahydromethanopterin dehydrogenase
OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1) GN=mtd PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 69 PLVTLDSSGS--QVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSD 126
P+ D +G+ +V+ FR M++ K +D VK KG L+ LPKV MTSD
Sbjct: 131 PIEMADYNGNLVKVLALTGAFRKMQMELDKVID--QVKAGKKGADLA----LPKVVMTSD 184
Query: 127 YDMNGKVLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKNHKQFVKLDAT 175
++G+ + + A V G F K ++++ + A+
Sbjct: 185 KAVDGEFSNPYALAKARAAYEIAQSVAGVNVKGCFMTKEWEKYIPIVAS 233
>sp|Q81PH1|Y2834_BACAN Uncharacterized protein BA_2834/GBAA_2834/BAS2643 OS=Bacillus
anthracis GN=BA_2834 PE=1 SV=1
Length = 345
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 147 NFTDVEADVLFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNLFNGNEELGRSTNNF 206
N VEAD+ + G FY + V L+ P+ + + + +H N+ N E+ +F
Sbjct: 159 NIGTVEADIAYGGNFYAIIDAKSVGLELVPEHASTIIDKAIHIRNIINERFEIIHPEYSF 218
Query: 207 L 207
+
Sbjct: 219 I 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,262,344
Number of Sequences: 539616
Number of extensions: 4208871
Number of successful extensions: 10512
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10490
Number of HSP's gapped (non-prelim): 31
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)