RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4431
(250 letters)
>gnl|CDD|219095 pfam06585, JHBP, Haemolymph juvenile hormone binding protein
(JHBP). This family consists of several insect-specific
haemolymph juvenile hormone binding proteins (JHBP).
Juvenile hormone regulates embryogenesis, maintains the
status quo of larval development and stimulates
reproductive maturation in the adult insect. JH is
transported from the sites of its synthesis to target
tissues by a haemolymph carrier called juvenile
hormone-binding protein (JHBP). JHBP protects the JH
molecules from hydrolysis by non-specific esterases
present in the insect haemolymph. The crystal structure
of the JHBP from Galleria mellonella shows an unusual
fold consisting of a long alpha-helix wrapped in a much
curved antiparallel beta-sheet. The folding pattern for
this structure closely resembles that found in some
tandem-repeat mammalian lipid-binding and bactericidal
permeability-increasing proteins, with a similar
organisation of the major cavity and a disulfide bond
linking the long helix and the beta-sheet. It would
appear that JHBP forms two cavities, only one of which,
the one near the N- and C-termini, binds the hormone;
binding induces a conformational change, of unknown
significance. This family now includes DUF233,
pfam03027.
Length = 246
Score = 209 bits (535), Expect = 4e-68
Identities = 78/244 (31%), Positives = 137/244 (56%), Gaps = 2/244 (0%)
Query: 4 FFCYVLFLVLTVQIYAANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPIL 63
+L L+ V A LP++++ C R+ + N C+ + I++L+P +G+PEL IP L
Sbjct: 5 VVLLLLVLLALVLSAGALLPAFLEKCSRSDPNDNKCLKESIQALRPYLAKGIPELGIPPL 64
Query: 64 EPLNLPLVTLDSSGSQVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYM 123
+PL + + + GS + KANF+N+K++G +K +KLD K + L+ PK+ +
Sbjct: 65 DPLVIDDLKISQ-GSGPIGLKANFKNLKIYGLSNFTIKKLKLDLDKLKFELKLYFPKLSL 123
Query: 124 TSDYDMNGKVLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKNHKQFVKLDATPKVSIKLG 183
Y + GK+L+LPI G G + +V+A G+ YE++ K ++K+ KV I +G
Sbjct: 124 KGKYKLKGKLLLLPISGKGDFNLTLENVKATGKLKGRLYERDGKTYLKVT-KLKVEIDVG 182
Query: 184 NSEMHFDNLFNGNEELGRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYSV 243
+ + +NLFNGN+ELG + N F+N+NW+ + E+ P +++ + I + +
Sbjct: 183 DVKFDLENLFNGNKELGDAMNKFINENWKELLNELKPAIEEALEKIFVDILNKIFKKVPY 242
Query: 244 DQLL 247
D L
Sbjct: 243 DDLF 246
>gnl|CDD|214779 smart00700, JHBP, Juvenile hormone binding protein domains in
insects. The juvenile hormone exerts pleiotropic
functions during insect life cycles and its binding
proteins regulate these functions.
Length = 224
Score = 165 bits (419), Expect = 9e-51
Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 5/228 (2%)
Query: 20 ANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSGSQ 79
A P+++KPCK D + C+ D I++L P+ G+PE IP L+PL + + + S
Sbjct: 1 AEGPAFLKPCKLG--DPSECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKISI-DSG 57
Query: 80 VVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPIR 139
V+ + F+N+K++G ++ K+D K +K+ + + PK+ + DY ++G++L LP+
Sbjct: 58 VIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKIEFPKLNVKGDYKLDGRLLGLPLN 117
Query: 140 GNGKCSGNFTDVEADVLFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNLFNGNEEL 199
G G + +V+ K K+ + KV+ ++G+ + H DNLFNGN++L
Sbjct: 118 GKGDANFTLENVKIRGTLKLKLGPDGKTYL-KIKSL-KVNFEVGDVKSHLDNLFNGNKDL 175
Query: 200 GRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYSVDQLL 247
+ N FLN+NW+ + E++P + + + +I L V +D+
Sbjct: 176 NDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPIDEFF 223
>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 364
Score = 29.5 bits (67), Expect = 1.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 75 SSGSQV-VNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
S G V V + + LD + ++L YKG LSM++ LPK
Sbjct: 183 SEGESVQVPMMYQTGKFRYAEDEELDAQVLELPYKGSDLSMLIILPK 229
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 27.3 bits (61), Expect = 8.6
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 68 LPLVTLDSSGSQVVNFKANFRNMKLHGA--KTLDVKDVKLDYKGRKLSMVLHLPKVYMTS 125
LP T+ S +Q+ N+KLH + D ++ KG V P+ + +
Sbjct: 230 LPFSTIPLSSNQLQKILNQLENVKLHDGWQQIPDYLVLRTQLKGPGWQQVTLYPRRNLAN 289
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 27.3 bits (60), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 55 LPELKIPILEPLNLPLVTLDSSGSQVVNFKANF 87
LP L P+LE +LP L S G+ N A F
Sbjct: 163 LPAL--PLLEVRDLPSFMLPSGGAHFNNLMAEF 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.402
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,283,876
Number of extensions: 1124546
Number of successful extensions: 802
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 15
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)