RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4431
(250 letters)
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8;
1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Length = 220
Score = 168 bits (427), Expect = 2e-52
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)
Query: 28 PCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSGSQVVNFKANF 87
P ++ + + ++C+ + P F GLP+ + +++ L+L D S +
Sbjct: 4 PVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFDLS-----GLQFTL 58
Query: 88 RNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPIRGNGKCSGN 147
+ KL G K + +VK D K + + + HL + Y G++L+LPI G+G+
Sbjct: 59 KEGKLKGLKGAVIDNVKWDLKKKNIEVDFHLD-ATVKGHYTAGGRILILPITGDGQMKLK 117
Query: 148 FTDVEADVLFSGKF-YEKNHKQFVKLDATPKVSIKL-GNSEMHFDNLFNGNEELGRSTNN 205
++ ++ S + + V V+ + N++ NLFNGN+EL +
Sbjct: 118 LKNIHIHLVVSYEMEKDAEGVDHVIFKKY-TVTFDVKDNAQFGLTNLFNGNKELSDTMLT 176
Query: 206 FLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYSVDQLLP 248
FLN NW+ VS E V + + ++ K+ L + ++
Sbjct: 177 FLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEIAN 219
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR
{Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Length = 227
Score = 140 bits (354), Expect = 2e-41
Identities = 32/228 (14%), Positives = 78/228 (34%), Gaps = 17/228 (7%)
Query: 19 AANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSGS 78
++ + +KPCK C+ + + +G+P+ I ++PL + + + +
Sbjct: 1 GSDGDALLKPCKLGD---MQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSD 57
Query: 79 QVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPI 138
F+N+ + G K + D ++D K + + + +D + G +++
Sbjct: 58 --AGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTK-------ADLHIVGDIVIELT 108
Query: 139 RGNGKCSGNFTDVEADVLFSGKFYE----KNHKQFVKLDATPKVSIKLGNSEMHFDNLFN 194
+ +G +T + Y N Q ++ +G ++ + +
Sbjct: 109 EQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLS 168
Query: 195 GNEELGRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYS 242
E S NN L + E + + + N+
Sbjct: 169 SALEK-DSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAK 215
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG;
2.44A {Galleria mellonella}
Length = 225
Score = 131 bits (331), Expect = 5e-38
Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 17/228 (7%)
Query: 20 ANLPSYIKPCKRNSSDLNSCVIDIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSGSQ 79
+ L +PC + + C+ + +QG+PE I L+P+ +P + +
Sbjct: 1 SKLNLSTEPCDVSDIE---CISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEK---SIE 54
Query: 80 VVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPIR 139
+N + N+K+ G K + L + ++ ++ GK+++ +
Sbjct: 55 KINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTK-------VNFTAEGKLVIELPK 107
Query: 140 GNGKCSGNFTDVEADV----LFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNLFNG 195
+ +G T + + + + G + +
Sbjct: 108 SSKTYTGEVTIEASAEGGAAYSYSVKTDDKGVEHYEAGPETVSCEIFGEPTLSVSSTLED 167
Query: 196 NEELGRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYSV 243
+L + + ++ V T+ N+ +
Sbjct: 168 ALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARI 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.008
Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 75/228 (32%)
Query: 47 LKPRFHQGLPELKIPIL------EPL-NLPLVT--LD-----------SSGSQVVN---- 82
L+ +F++ LPE P EP LV L QV+N
Sbjct: 33 LQEQFNKILPE---PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 83 -FKANF-RNMKLHG-AKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGKVLVLPIR 139
F+ + +H A L ++ L L K Y+T+ P
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDT------TLVKTKELIKNYITARIMAKR-----PFD 138
Query: 140 GNGKCSGNFTDVEAD-----VLFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNLFN 194
S F V +F G Q GN++ +F+ L
Sbjct: 139 KKSN-SALFRAVGEGNAQLVAIFGG--------Q--------------GNTDDYFEEL-- 173
Query: 195 GNEELGRSTNNFLNDNWELVSAEVIPLVQDTVSTISYQLFKNVLDVYS 242
+L ++ + + D + + + L++ T+ F L++
Sbjct: 174 --RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILE 217
Score = 28.5 bits (63), Expect = 2.9
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 18/65 (27%)
Query: 62 ILEPLNLPLVTLDSSGSQVV---NFKA--NFRNMKLHGAKTLDVKDVKLDYKGRKLSMVL 116
++E +N + Q V + +A N+ + ++ + + +L L
Sbjct: 1840 LVEIVNY-----NVENQQYVAAGDLRALDTVTNV----LNFIKLQKIDI----IELQKSL 1886
Query: 117 HLPKV 121
L +V
Sbjct: 1887 SLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.12
Identities = 30/229 (13%), Positives = 73/229 (31%), Gaps = 61/229 (26%)
Query: 42 DIIKSLKPRFHQGLPELKIPILEPLNLPLVTLDSSGSQVVNFKANFRNM---KLHGAKTL 98
+++ L+ +Q P N+ L +A R + K + L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--------IQAELRRLLKSKPY-ENCL 247
Query: 99 ----DVKDVK----LDYKGRKLSMVLHLPKVYMTS------DYDMNGKVLVLPIRGNGKC 144
+V++ K + + L +T+ D+ + +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL----------LTTRFKQVTDFLSAATTTHISL---DHH 294
Query: 145 SGNFTDVEADVLFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNLFNGNEELGRSTN 204
S T E L K+ + + P+ + + ++ S
Sbjct: 295 SMTLTPDEVKSLLL-KYLD------CRPQDLPREVLTT--NPRRL-SII------AESIR 338
Query: 205 NFLN--DNWELVSAE-VIPLVQDTVSTISYQLFKNVLDVYSVDQLLPEN 250
+ L DNW+ V+ + + +++ +++ + ++ + D SV P +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPS 384
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell
surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo
sapiens} PDB: 4dy7_C
Length = 379
Score = 32.2 bits (74), Expect = 0.15
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 84 KANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
+ FR L ++L Y G +SM++ LP
Sbjct: 204 LSVFRCGSTSAPNDLWYNFIELPYHGESISMLIALPT 240
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.23
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Query: 163 EKNH-KQF---VKL---DATPKVSIK 181
EK K+ +KL D+ P ++IK
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1wz9_A Maspin precursor; serpin, tumor suppressor, serpinb5, signaling
protein; HET: CME; 2.10A {Homo sapiens} PDB: 1xu8_A
1xqg_A 1xqj_A
Length = 375
Score = 31.4 bits (72), Expect = 0.27
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMN 130
+++ K ++L ++ + LSM + LPK +
Sbjct: 210 DSINCKIIELPFQNKHLSMFILLPKDVEDESTGLE 244
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 31.2 bits (71), Expect = 0.33
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ ++ K ++L Y R+LSM + LP
Sbjct: 263 EKMNFKMIELPYVKRELSMFILLPD 287
>3pzf_A Serpin 2; protease inhibitor, melanization, hydrolase inhibito;
1.75A {Anopheles gambiae}
Length = 397
Score = 31.1 bits (71), Expect = 0.36
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
L + ++L Y+G KL+M LP
Sbjct: 228 ADLGAQILRLPYRGNKLAMYFILPN 252
>2h4r_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 2.70A {Gallus
gallus} PDB: 2dut_A
Length = 415
Score = 30.8 bits (70), Expect = 0.40
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ ++ K ++L Y R+LSM + LP
Sbjct: 243 EKMNFKMIELPYVKRELSMFILLPD 267
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 30.6 bits (70), Expect = 0.44
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
LD K +++ Y+G + SM++ LP
Sbjct: 215 PELDAKMIEMSYEGDQASMIIILPN 239
>2zv6_A Serpin B3; serine proteinase inhibitor, reactive site loop,
acetylation, alternative splicing, cytoplasm,
polymorphism, protease inhibitor; 2.70A {Homo sapiens}
Length = 401
Score = 30.8 bits (70), Expect = 0.47
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ + K +++ YKG+ LSM++ LP
Sbjct: 236 EDVQAKVLEIPYKGKDLSMIVLLPN 260
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47),
member 1, (collagen binding...; chaperone-peptide
complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A
4au4_A 4awr_A 4au3_B
Length = 392
Score = 30.6 bits (70), Expect = 0.48
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ ++ V++ + S+++ +P
Sbjct: 215 EKEKLQIVEMPLAHKLSSLIILMPH 239
>1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine
proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Length = 345
Score = 30.3 bits (69), Expect = 0.50
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMN 130
+ L + ++L Y+G++LSM++ LP +
Sbjct: 211 EDLKCRVLELPYQGKELSMIILLPDDIEDESTGLE 245
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 30.3 bits (69), Expect = 0.54
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ + V + + V+ LP
Sbjct: 237 EDEGFEIVSKPLNNTRFTFVIVLPL 261
>1uhg_A Ovalbumin, S-ovalbumin; allergen, egg white protein, serpin; HET:
SEP NAG; 1.90A {Gallus gallus} SCOP: e.1.1.1 PDB:
1ova_A* 1jti_A
Length = 385
Score = 30.3 bits (69), Expect = 0.63
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ +K ++L + +SM++ LP
Sbjct: 223 ASEKMKILELPFASGTMSMLVLLPD 247
>2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter
tengcongensis} PDB: 2vh4_A 2pee_A
Length = 373
Score = 30.2 bits (69), Expect = 0.66
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
+ + Y S V LP
Sbjct: 206 EEENAVGFVKPYAKNHYSFVAILPD 230
>3f5n_A Neuroserpin; cleaved form, fenib, human, tissue PLAS activator,
hydrolase inhibitor; 3.15A {Homo sapiens}
Length = 407
Score = 29.9 bits (68), Expect = 0.71
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 92 LHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
+ +++ Y+G ++SM+L L +
Sbjct: 228 GSNEAGGIYQVLEIPYEGDEISMMLVLSR 256
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 29.9 bits (68), Expect = 0.81
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 96 KTLDVKDVKLDYKGRKLSMVLHLPK 120
L V+ V+L Y+G +M + LPK
Sbjct: 215 DDLQVEVVELPYRGLDYTMAILLPK 239
>1lj5_A Plasminogen activator inhibitor-1; beta-barrell, blood clotting;
1.80A {Homo sapiens} SCOP: e.1.1.1 PDB: 1dvn_A 1c5g_A
1a7c_A* 3q02_A 3q03_A 3r4l_A* 1oc0_A 1b3k_A 3pb1_I
1dvm_A 3eox_A 3cvm_A 1db2_A 9pai_A 3lw2_A 9pai_B
Length = 379
Score = 29.9 bits (68), Expect = 0.86
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 84 KANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
F + ++L Y G LSM + P
Sbjct: 205 TNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPY 241
>3f02_A Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein,
protease inhibitor, secreted, serine protease inhibitor,
hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A
1jjo_C 1jjo_A
Length = 359
Score = 29.5 bits (67), Expect = 0.92
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 92 LHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
+ +++ Y+G ++SM+L L +
Sbjct: 228 GSNEAGGIYQVLEIPYEGDEISMMLVLSR 256
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 29.2 bits (66), Expect = 0.99
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 90 MKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYM----TSDYD---MNGKVLVLPIRGNG 142
M H +T+ + + + G ++ +V M + G V ++ + NG
Sbjct: 1 MAEHDFETISSETL---HTGAIFALRRD--QVRMPGGGIVTREVVEHFGAVAIVAMDDNG 55
Query: 143 K 143
Sbjct: 56 N 56
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding
protein, unknown function, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.15.1
Length = 79
Score = 27.0 bits (60), Expect = 1.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 71 VTLDSSGSQVVNFKANFRNMKLHGAK 96
VT++ G+ ++F N + + G +
Sbjct: 46 VTINDDGTLHMHFSRNPKVLNPRGLR 71
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo
sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I*
1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I*
1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A*
3evj_I* ...
Length = 432
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 98 LDVKDVKLDYKGRKLSMVLHLPK 120
+ ++L +KG ++MVL LPK
Sbjct: 265 EGTQVLELPFKGDDITMVLILPK 287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.402
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,645,563
Number of extensions: 207053
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 39
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)