RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4431
         (250 letters)



>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one
          binding) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 66

 Score = 27.7 bits (62), Expect = 0.24
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 71 VTLDSSGSQVVNFKANFRNMKLHGAK 96
          VT++  G+  ++F  N + +   G +
Sbjct: 39 VTINDDGTLHMHFSRNPKVLNPRGLR 64


>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
           (Manduca sexta) [TaxId: 7130]}
          Length = 376

 Score = 28.3 bits (62), Expect = 0.91
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 73  LDSSGSQVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPKVYMTSDYDMNGK 132
           +    +  V      ++++      LD K +++ Y+G + SM++ LP   +     +  K
Sbjct: 190 VSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQ-VDGITALEQK 248

Query: 133 VLVLPIRGNGKCSGNFTDVEADVLFSGKFYEKNHKQFVKLDATPKVSIKLGNSEMHFDNL 192
           +         +     T+VE   +   KF  +      ++ +   +           +NL
Sbjct: 249 LKDPKALSRAEERLYNTEVE---ITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENL 305

Query: 193 FNGNEEL 199
               E L
Sbjct: 306 LKTKESL 312


>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 426

 Score = 26.7 bits (58), Expect = 3.0
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 75  SSGSQVVNFKANFRNMKLHGAKTLDVKDVKLDYKGRKLSMVLHLPK 120
           + G               +       + ++L +KG  ++MVL LPK
Sbjct: 237 ADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPK 282


>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase
           PP2188 {Pseudomonas putida [TaxId: 303]}
          Length = 199

 Score = 25.2 bits (55), Expect = 6.7
 Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 2/18 (11%)

Query: 42  DIIKSL--KPRFHQGLPE 57
           ++I+S   + RFH G+P+
Sbjct: 182 ELIQSPDQELRFHSGIPQ 199


>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2,
           P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 218 VIPLVQDTVSTISYQLFKNVLDVYSVDQLLP 248
           V+P+  DTV  I+  LF+  L  Y ++   P
Sbjct: 10  VLPI-DDTVEGITGNLFEVYLKPYFLEAYRP 39


>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 222

 Score = 24.8 bits (54), Expect = 9.9
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 144 CSGNFTDVEADVLFSGKFYEKNHKQFVKLDATPKV 178
           C  N   VEAD+ F+ +F+      F       K 
Sbjct: 64  CGKNL-GVEADMDFAREFFAPLRDNFQTALGQGKT 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 899,176
Number of extensions: 40269
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 13
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)