BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4433
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus
norvegicus GN=Srprb PE=2 SV=1
Length = 269
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 3 FFKF---RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKN 56
F+KF RKSSQ+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + +
Sbjct: 51 FWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNS 110
Query: 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR 116
+ ++DLPG + LR +F D++KSSA+ +V+V+DS+T Q+ ++DVAE LY +L D +
Sbjct: 111 LTLIDLPGHESLRLQFLDRFKSSARAVVFVVDSATFQREVKDVAEFLYQVLIDSMALKNT 170
Query: 117 VNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDF 176
LV CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+F
Sbjct: 171 PAFLVACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEF 230
Query: 177 EFSDLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
EFS L +V F + + G A DV+ L+ W+ +
Sbjct: 231 EFSQLPLKVEFLECSAKGGRGDAGSADVQDLEKWLAKI 268
>sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus
GN=Srprb PE=1 SV=1
Length = 269
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 9/218 (4%)
Query: 3 FFKF---RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKN 56
F+KF RKSSQ+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + +
Sbjct: 51 FWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNS 110
Query: 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSR 116
+ ++DLPG + LR + D++KSSA+ +V+V+DS+ Q+ ++DVAE LY +L D +
Sbjct: 111 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 170
Query: 117 VNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDF 176
++L+ CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+F
Sbjct: 171 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEF 230
Query: 177 EFSDLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
EFS L +V F + + G D++ L+ W+ +
Sbjct: 231 EFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 268
>sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens
GN=SRPRB PE=1 SV=3
Length = 271
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 126/215 (58%), Gaps = 6/215 (2%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY---EKKNIKI 59
+ R+SSQ+ VLL GL SGKTLLF RL+ Y ++ TS+ ++ + ++ +
Sbjct: 56 LIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTL 115
Query: 60 VDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119
+DLPG + LR +F +++KSSA+ IV+V+DS+ Q+ ++DVAE LY +L D + +
Sbjct: 116 IDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSF 175
Query: 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFS 179
L+ CNKQD +AKS+ +++ L+KELN +R T+S + + LG K+FEFS
Sbjct: 176 LIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFS 235
Query: 180 DLYNQVSFCDTT---GLDSASEYDVEQLQDWMVTL 211
L +V F + + G D++ L+ W+ +
Sbjct: 236 QLPLKVEFLECSAKGGRGDVGSADIQDLEKWLAKI 270
>sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta OS=Dictyostelium
discoideum GN=srprb PE=3 SV=1
Length = 290
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 14 VLLSGLSLSGKTLLFARLV-YSKYFESCTSLKENVGNFTYE-KKNIKIVDLPGEDRLRNK 71
+ + GLS +GKT L L K + TS+ N G + E KK + I+D+PG + +
Sbjct: 88 IAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENKKKLPIIDVPGNGKAKAS 147
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ S++ I+YV+D +T A+ LY IL + V ++ +LV NK D
Sbjct: 148 L-PKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDST 206
Query: 132 KSSSVVKTLLQKELNLVRRTKS------NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV 185
+ VK +L++EL+ +RRT+ Q ED D+ +LG F+F L N V
Sbjct: 207 IDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDI-----YLGIEGTPFQFDHLPNDV 261
Query: 186 SFCDTTGLDSASEYDVEQLQD 206
F + G S S +++++ D
Sbjct: 262 QFSN--GSASPSNGELKEIDD 280
>sp|O13950|SRPB_SCHPO Signal recognition particle receptor subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp102 PE=3 SV=1
Length = 227
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2 LFFKFRKSSQK---VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK 58
+FF RK+ QK V L G S SGKT LF L+Y + + S++ N + Y
Sbjct: 26 IFFT-RKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY---GAW 81
Query: 59 IVDLPGEDR----LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQ 113
+VDLPG R + KF Y + K +V+VL+S+T+ + + +V L+ IL + +
Sbjct: 82 LVDLPGHPRAKRWITTKFSGNY--NVKAVVFVLNSATIDRDVHEVGLMLFDTIL---KCR 136
Query: 114 SSRV-NILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157
V ++L+ CNK D A+ + ++ LL+ EL+ + K+ QLE
Sbjct: 137 KHHVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLE 181
>sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1
SV=1
Length = 244
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED 66
+KS Q ++++G SGKT L L + S +E + Y+ + +VD PG
Sbjct: 34 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDGSGVTLVDFPGHV 92
Query: 67 RLRNKFFDQYKSSAK---GIVYVLDSSTVQKTLRDVAESLYVILADPQVQ-SSRVNILVC 122
+LR K D K+ AK G+++++DS+ K L AE L IL+ + + ++IL+
Sbjct: 93 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 152
Query: 123 CNKQDQTLAKSSSVVKTLLQKELNLV--RRTKS-NQLE---DTNDVAANQTFLGNPDKDF 176
CNK + A+ S +K L+ E+ V RR KS N++E + D A N + F
Sbjct: 153 CNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGF 212
Query: 177 EFSDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208
+F++L V + S ++ + Q ++W+
Sbjct: 213 KFANLEASVVAFE----GSINKRKISQWREWI 240
>sp|Q94231|ARF11_CAEEL ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans
GN=arf-1.1 PE=3 SV=3
Length = 179
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 15 LLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFD 74
L+ GL +GKT + +L ++ + ++ NV T++K + + D+ G+ ++R +
Sbjct: 21 LMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIR-ALWK 79
Query: 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134
Y + +V+V+DSS +++ + + E L+ +LA+P++ S ++LV NKQD A+S
Sbjct: 80 YYFPNTTTLVFVVDSSDIER-IPEAKEELFSLLAEPELADS--HLLVFANKQDMPNARSP 136
Query: 135 SVVKTLL 141
+ + LL
Sbjct: 137 AELTQLL 143
>sp|P40994|ARF3_YEAST ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ARF3 PE=1 SV=2
Length = 183
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPG 64
K S + +L+ GL +GKT + +L +K S ++ NV TY+ + D+ G
Sbjct: 11 KLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGG 70
Query: 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124
+ RLR + Y + +++V+DSS + + + E LY I+ + ++++ V +LV N
Sbjct: 71 QQRLR-PLWRHYFPATTALIFVIDSSA-RNRMEEAKEELYSIIGEKEMEN--VVLLVWAN 126
Query: 125 KQDQTLAKSSSVVKTLLQKELNL 147
KQD A V L+ E NL
Sbjct: 127 KQDLKDAMKPQEVSDFLELEKNL 149
>sp|Q6P068|ARL5C_MOUSE ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c
PE=2 SV=1
Length = 179
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
+ S + V++ GL +GKT + + + ++ +C+++ NV K + + DL
Sbjct: 8 LMRIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDL 67
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G++ LR+ +D Y S+A+ ++ V+D ST + L E LY +LA +Q++ V L+
Sbjct: 68 GGQEALRST-WDTYYSNAEFVILVID-STDRNRLLTTREELYKMLAHEALQNASV--LIF 123
Query: 123 CNKQD 127
NKQD
Sbjct: 124 ANKQD 128
>sp|Q9SHU5|ARF4_ARATH Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana
GN=At2g15310 PE=2 SV=3
Length = 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPG 64
+F S+ +L+ GL SGKT + +L + + ++ N+ Y+ N + D+ G
Sbjct: 11 RFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGG 70
Query: 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124
++++R K + Y +A+G+++V+DSS ++ L + L+ IL D +++ + +LV N
Sbjct: 71 QEKIR-KLWRHYFQNAQGLIFVVDSSDSER-LSEARNELHRILTDNELEGA--CVLVFAN 126
Query: 125 KQD 127
KQD
Sbjct: 127 KQD 129
>sp|P38116|ARL1_YEAST ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ARL1 PE=1 SV=4
Length = 183
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 2 LFFKFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+F K S++++ +L+ GL +GKT + RL + + ++ NV +Y+ + +
Sbjct: 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVW 67
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120
DL G+ +R ++ Y + +++V+DS T + + ++ L+++L + ++Q + +L
Sbjct: 68 DLGGQTSIR-PYWRCYYADTAAVIFVVDS-TDKDRMSTASKELHLMLQEEELQDAA--LL 123
Query: 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVR 149
V NKQDQ A S+S V KELNLV
Sbjct: 124 VFANKQDQPGALSASEV----SKELNLVE 148
>sp|Q55AD9|ARL5_DICDI ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum
GN=arl5 PE=3 SV=1
Length = 183
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
++ +F +++ V++ GL+ +GKT +L+ + + ++ N+ F Y + + D
Sbjct: 11 IWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWD 70
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
L G+D LR+ ++QY + + ++ V+D ST + + + E L+ +LA ++ S IL+
Sbjct: 71 LGGQDLLRST-WNQYYINTQAVILVID-STDRARVNLIKEELFKMLAHENLKKSI--ILI 126
Query: 122 CCNKQDQTLAKSSSVVKTLL 141
NKQD A S + + TLL
Sbjct: 127 YANKQDLKDAMSPTELSTLL 146
>sp|Q9Y7Z2|ARF6_SCHPO ADP-ribosylation factor 6 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=arf6 PE=3 SV=1
Length = 184
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L ++ + ++ NV TY+ + D+ G+D++R +
Sbjct: 24 ILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR-PLW 82
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + KG+++V+DS+ + + + + L+ I++D +++ +LV NKQD A S
Sbjct: 83 RHYFTGTKGLIFVVDSADSNR-ISEARQELHRIISDREMRDCL--LLVLANKQDLPGALS 139
Query: 134 SSVVKTLLQ 142
+ + +LQ
Sbjct: 140 PAQITDVLQ 148
>sp|Q3SXC5|ARL14_MOUSE ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14
PE=2 SV=1
Length = 192
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGED 66
+S Q +LL GL +GK+ L RL +++ + ++ NV + + + D+ G++
Sbjct: 10 QSKQAHILLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQE 69
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
++R +D Y +A+G++YV+D S +K L D + IL + ++++ V IL NKQ
Sbjct: 70 KMRT-VWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILA--NKQ 126
Query: 127 DQTLAKSS 134
D A S+
Sbjct: 127 DLPGALSA 134
>sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster
GN=Arf84F PE=2 SV=2
Length = 184
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 5 KFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLP 63
K R+ +++ +LL GL +GKT + R +L N+ + + + D+
Sbjct: 9 KMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVG 68
Query: 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123
G+ LR+ ++ Y S G+V+V+DS+ + L + L V+L + ++ + +LV C
Sbjct: 69 GQKSLRS-YWRNYFESTDGLVWVVDSADRMR-LESCGQELQVLLQEERLAGA--TLLVLC 124
Query: 124 NKQDQTLAKSSSVVKTLLQKE 144
NKQD A SS+ +K +L E
Sbjct: 125 NKQDLPGALSSNEIKEILHLE 145
>sp|Q54Y14|SAR1B_DICDI GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3
SV=1
Length = 194
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 1 FLFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
FL+ F K K+V++ GL +GKT L LV +L+ N +FTY N K
Sbjct: 11 FLWLGFFKKEAKIVII-GLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAY 69
Query: 61 DLPGEDRLRNKFFDQYKSSAKG-IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119
DL G+ LR + QY +K IV+++DSS + +E ++ IL D + S + I
Sbjct: 70 DLGGQQNLR-FLWKQYVPDSKTIIVFMVDSSDYNSIIESKSE-IHDILGDEHLSQSPLLI 127
Query: 120 L 120
L
Sbjct: 128 L 128
>sp|Q8SQH8|ARF_ENCCU ADP-ribosylation factor OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ARF-1 PE=1 SV=3
Length = 207
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGE 65
F S++ + + GL +GKT L L + ++ +L N N T ++ D+ G+
Sbjct: 20 FSGQSERSITMIGLDGAGKTTLLLYLQTGEVHQTVPTLGFNCENVTLGSMKFQVWDIGGQ 79
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+ +F+ QY + GI+Y++D + Q+ + E L+ IL + +S +LV NK
Sbjct: 80 NSFM-RFWHQYINEGCGIIYMVDCADPQRFGKS-GEELWRIL---NILNSPRPLLVLANK 134
Query: 126 QDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLY 182
D S V ++ E NL R +Q+ + + A N + E D +
Sbjct: 135 IDLIREHERSEVVKSIRNEFNLERYNGPSQVVPISVLQAGSMTSANDENGREIIDAF 191
>sp|O00909|ARF1_DICDI ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1
SV=3
Length = 182
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF +F +L+ GL +GKT + +L + + ++ NV ++ N + D
Sbjct: 8 LFSRFFGKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+D++R + Y + +G+++V+DS+ ++ +++ + L +L + +++ + +LV
Sbjct: 68 VGGQDKIR-PLWRHYFQNTQGLIFVVDSNDRER-IQEACDELTKMLNEDELRDAV--LLV 123
Query: 122 CCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152
CNKQD L + SV + + L+ +R K
Sbjct: 124 FCNKQD--LPNAMSVAEVTDKLNLHSLRSRK 152
>sp|Q5EA19|ARL15_BOVIN ADP-ribosylation factor-like protein 15 OS=Bos taurus GN=ARL15 PE=2
SV=1
Length = 202
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 18 GLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYK 77
GL+ SGKT L ++L ++ ++ ++ + + +L G D +R K++ +Y
Sbjct: 39 GLTGSGKTSLLSKLCSESPDSVVSTTGFSIKAVPFQNAILNVKELGGADNIR-KYWSRYY 97
Query: 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137
++G+++VLDS++ + L L+ L PQ+ + + L+ N QD+ A+S V
Sbjct: 98 QGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCT--LPFLILANHQDKPAARSVQEV 155
Query: 138 KTLLQKE 144
K + E
Sbjct: 156 KKYFELE 162
>sp|Q8BGR6|ARL15_MOUSE ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15
PE=2 SV=1
Length = 204
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 19/135 (14%)
Query: 18 GLSLSGKTLLFARLVYSKYFESCTSLKENVGNFT--------YEKKNIKIVDLPGEDRLR 69
GL+ SGKT L + L C+ ENV + T ++ + + +L G D +R
Sbjct: 39 GLTGSGKTSLLSEL--------CSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIR 90
Query: 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129
K++ +Y ++G+++VLDS++ + L L+ L PQ+ + + L+ N QD+
Sbjct: 91 -KYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCT--LPFLILANHQDKP 147
Query: 130 LAKSSSVVKTLLQKE 144
A+S +K + E
Sbjct: 148 AARSVQEIKKYFELE 162
>sp|P51645|ARF6_XENLA ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2
Length = 175
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
+F K + + +L+ GL +GKT + +L + + ++ NV TY+ + D
Sbjct: 4 MFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+D++R + Y + +G+++V+D + + + + L+ I+ D +++ + IL+
Sbjct: 64 VGGQDKIR-PLWRHYYTGTQGLIFVVDCPDRDR-IDEARQELHRIINDREMRDA--IILI 119
Query: 122 CCNKQDQTLAKSSSVVKTLLQKELNLVR 149
NKQD A + Q++L L R
Sbjct: 120 FANKQDLPDAMKPHEI----QEKLGLTR 143
>sp|Q5RFN0|ARL15_PONAB ADP-ribosylation factor-like protein 15 OS=Pongo abelii GN=ARL15
PE=2 SV=1
Length = 204
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 18 GLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYK 77
GL+ SGKT L ++L ++ ++ ++ + + +L G D +R K++ +Y
Sbjct: 39 GLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIR-KYWSRYY 97
Query: 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137
++G+++VLDS++ + L L+ L PQ+ + + L+ N QD+ A+S +
Sbjct: 98 QGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCT--LPFLILANHQDKPAARSVQEI 155
Query: 138 KTLLQKE 144
K + E
Sbjct: 156 KKYFELE 162
>sp|Q9NXU5|ARL15_HUMAN ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15
PE=1 SV=1
Length = 204
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 18 GLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYK 77
GL+ SGKT L ++L ++ ++ ++ + + +L G D +R K++ +Y
Sbjct: 39 GLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIR-KYWSRYY 97
Query: 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137
++G+++VLDS++ + L L+ L PQ+ + + L+ N QD+ A+S +
Sbjct: 98 QGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCT--LPFLILANHQDKPAARSVQEI 155
Query: 138 KTLLQKE 144
K + E
Sbjct: 156 KKYFELE 162
>sp|Q02804|ARL3_YEAST ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ARL3 PE=1 SV=1
Length = 198
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARL--VYSKYFESCTSLK----ENVGNFTYEKK 55
L+ + K Q +L+ GL +GKT L YS F++ ++ +NV + K
Sbjct: 8 LYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSK 67
Query: 56 NI-KIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQS 114
I K D+ G++ LR+ + +Y S GI++++DSS ++ L + + +L ++ D +++
Sbjct: 68 QILKFWDVGGQESLRS-MWSEYYSLCHGIIFIVDSSDRER-LDECSTTLQSVVMDEEIEG 125
Query: 115 SRVNILVCCNKQDQ 128
V IL+ NKQD+
Sbjct: 126 --VPILMLANKQDR 137
>sp|Q54JJ3|ARFH_DICDI ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3
SV=1
Length = 189
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
+F F Q +L+ GL +GK+ L +L + ++ NV Y+ ++ + D
Sbjct: 16 IFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWD 75
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+ ++R + Y I++V+DS T ++ + +V E + +L +++ + IL+
Sbjct: 76 VGGQYKIR-ALWKHYYHGTNAIIFVVDS-TDRERMDEVKEEIDTLLIQEELKG--IQILI 131
Query: 122 CCNKQDQTLAKSSSVV 137
NKQD A ++S +
Sbjct: 132 FANKQDMNNAMNTSEI 147
>sp|P26990|ARF6_CHICK ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3
Length = 175
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV TY+ + D+ G+D++R +
Sbjct: 16 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-PLW 74
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+D + + + + + L+ I+ D +++ + IL+ NKQD A
Sbjct: 75 RHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAMK 131
Query: 134 SSVVKTLLQKELNLVR 149
+ Q++L L R
Sbjct: 132 PHEI----QEKLGLTR 143
>sp|P62332|ARF6_RAT ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2
Length = 175
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV TY+ + D+ G+D++R +
Sbjct: 16 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-PLW 74
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+D + + + + + L+ I+ D +++ + IL+ NKQD A
Sbjct: 75 RHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAMK 131
Query: 134 SSVVKTLLQKELNLVR 149
+ Q++L L R
Sbjct: 132 PHEI----QEKLGLTR 143
>sp|Q007T5|ARF6_PIG ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1
Length = 175
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV TY+ + D+ G+D++R +
Sbjct: 16 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-PLW 74
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+D + + + + + L+ I+ D +++ + IL+ NKQD A
Sbjct: 75 RHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAMK 131
Query: 134 SSVVKTLLQKELNLVR 149
+ Q++L L R
Sbjct: 132 PHEI----QEKLGLTR 143
>sp|P62331|ARF6_MOUSE ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2
Length = 175
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV TY+ + D+ G+D++R +
Sbjct: 16 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-PLW 74
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+D + + + + + L+ I+ D +++ + IL+ NKQD A
Sbjct: 75 RHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAMK 131
Query: 134 SSVVKTLLQKELNLVR 149
+ Q++L L R
Sbjct: 132 PHEI----QEKLGLTR 143
>sp|P62330|ARF6_HUMAN ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2
Length = 175
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + +L + + ++ NV TY+ + D+ G+D++R +
Sbjct: 16 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-PLW 74
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y + +G+++V+D + + + + + L+ I+ D +++ + IL+ NKQD A
Sbjct: 75 RHYYTGTQGLIFVVDCADRDR-IDEARQELHRIINDREMRDA--IILIFANKQDLPDAMK 131
Query: 134 SSVVKTLLQKELNLVR 149
+ Q++L L R
Sbjct: 132 PHEI----QEKLGLTR 143
>sp|Q5RCF1|ARF4_PONAB ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3
Length = 180
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + Q +L+ GL +GKT + +L + + ++ NV Y+ + D
Sbjct: 8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+DR+R + Y + +G+++V+DS+ ++ +++VA+ L +L +++ + +L+
Sbjct: 68 VGGQDRIR-PLWKHYFQNTQGLIFVVDSNDRER-IQEVADELQKMLLVDELRDAV--LLL 123
Query: 122 CCNKQD 127
NKQD
Sbjct: 124 FANKQD 129
>sp|P18085|ARF4_HUMAN ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3
Length = 180
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + Q +L+ GL +GKT + +L + + ++ NV Y+ + D
Sbjct: 8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+DR+R + Y + +G+++V+DS+ ++ +++VA+ L +L +++ + +L+
Sbjct: 68 VGGQDRIR-PLWKHYFQNTQGLIFVVDSNDRER-IQEVADELQKMLLVDELRDAV--LLL 123
Query: 122 CCNKQD 127
NKQD
Sbjct: 124 FANKQD 129
>sp|P40946|ARF3_DROME ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2
SV=3
Length = 175
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
L K + + +L+ GL +GKT + +L + + ++ NV TY+ + D
Sbjct: 4 LLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+D++R + Y + +G+++V+D + + + + L+ I+ D +++ + IL+
Sbjct: 64 VGGQDKIR-PLWRHYYTGTQGLIFVVDCADRDR-IDEARTELHRIINDREMRDA--IILI 119
Query: 122 CCNKQDQTLAKSSSVVKTLLQKELNLVR 149
NKQD A + Q++L L R
Sbjct: 120 FANKQDLPDAMKPHEI----QEKLGLTR 143
>sp|P19146|ARF2_YEAST ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ARF2 PE=1 SV=3
Length = 181
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + + +L+ GL +GKT + +L + + ++ NV Y+ + + D
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+DR+R+ + Y + +G+++V+DS+ + + + E + +L + +++++ LV
Sbjct: 68 VGGQDRIRS-LWRHYYRNTEGVIFVIDSND-RSRIGEAREVMQRMLNEDELRNAV--WLV 123
Query: 122 CCNKQDQTLAKSSSVV 137
NKQD A S++ +
Sbjct: 124 FANKQDLPEAMSAAEI 139
>sp|P11076|ARF1_YEAST ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ARF1 PE=1 SV=3
Length = 181
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + + +L+ GL +GKT + +L + + ++ NV Y+ + + D
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G+DR+R+ + Y + +G+++V+DS+ + + + E + +L + +++++ LV
Sbjct: 68 VGGQDRIRS-LWRHYYRNTEGVIFVVDSND-RSRIGEAREVMQRMLNEDELRNAA--WLV 123
Query: 122 CCNKQDQTLAKSSSVV 137
NKQD A S++ +
Sbjct: 124 FANKQDLPEAMSAAEI 139
>sp|Q54I24|ARFD_DICDI ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3
SV=2
Length = 216
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGE 65
F+ + K+++L GL SGKT + +L+ ++ + ++L NV ++ N+ + DL GE
Sbjct: 13 FKSKAIKLLML-GLDGSGKTTILYKLMLNEVVSTISTLGYNVETIQHKHLNLTLWDLAGE 71
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+R+R + + + I++V+DSS + + + A L ++ + +++ ++L+ K
Sbjct: 72 ERIRT-LWKPFYNKCTAIIFVVDSSDRLR-IDEAASELAKLMKEEELKG--CSLLIFATK 127
Query: 126 QD 127
QD
Sbjct: 128 QD 129
>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1
SV=4
Length = 184
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED 66
+K + +L+ GL +GKT + + +L N+ + + I D+ G+
Sbjct: 12 QKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
LR+ ++ Y S G+++V+DS+ Q+ ++D L +L + ++ + +L+ NKQ
Sbjct: 72 SLRS-YWRNYFESTDGLIWVVDSADRQR-MQDCQRELQSLLVEERLAGA--TLLIFANKQ 127
Query: 127 DQTLAKSSSVVKTLLQKELNLVR 149
D A SS+ ++ +L EL+ +R
Sbjct: 128 DLPGALSSNAIREVL--ELDSIR 148
>sp|P25160|ARL1_DROME ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster
GN=Arf72A PE=2 SV=5
Length = 180
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
F S + +L+ GL +GKT + RL + + ++ NV TY+ ++ DL
Sbjct: 8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 67
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G+ +R ++ Y S+ I+YV+DS+ + E LY++ + + + ++V
Sbjct: 68 GGQTSIR-PYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREE---ELAGAILVVL 123
Query: 123 CNKQDQTLAKSSSVVKTLLQKELNLVRRT 151
NKQD + + V L E NL RT
Sbjct: 124 ANKQDMDGCMTVAEVHHALGLE-NLKNRT 151
>sp|Q54HK2|ARFF_DICDI ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3
SV=1
Length = 190
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
+F F +L+ GL +GK+ L +L + + ++ NV Y+ ++ + D
Sbjct: 16 IFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWD 75
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G++ +R + QY ++V+DS T ++ +V + + I+ + +SS ++L+
Sbjct: 76 IGGQNNIR-ALWRQYDQRTDVFIFVVDS-TDRERFDEVKQEIKNIIEQNKNESSNASLLI 133
Query: 122 CCNKQD 127
NKQD
Sbjct: 134 FANKQD 139
>sp|P34212|ARL5_CAEEL ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans
GN=arl-5 PE=3 SV=3
Length = 178
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
LF + + +++ GL +GKT + V E+ ++ NV +Y + I D
Sbjct: 8 LFQSWWIGKKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWD 67
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G++ LR K + Y ++ V+DSS + + + E L+ +L + +R +ILV
Sbjct: 68 IGGQESLR-KSWSTYYVQTDVVIVVIDSSDTTR-IPIMKEQLHNMLQHEDL--ARAHILV 123
Query: 122 CCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156
NKQD A + + V T Q L +R + Q+
Sbjct: 124 LANKQDLPGAMNPAEVST--QLGLQTLRGARKWQI 156
>sp|Q99PE9|ARL4D_MOUSE ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d
PE=2 SV=2
Length = 201
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNI----------KIVDLP 63
V++ GL +GKT L RL + ++ +S + F EK + ++ D+
Sbjct: 24 VVVIGLDSAGKTSLLYRLKFKEFVQSVPT-----KGFNTEKIRVPLGGSRGITFQVWDVG 78
Query: 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123
G+++LR + Y G+V+V+DS+ ++ L + L+ I Q V +LV
Sbjct: 79 GQEKLR-PLWRSYTRRTDGLVFVVDSAETER-LEEARMELHRISKASDNQG--VPVLVLA 134
Query: 124 NKQDQTLAKSSS-VVKTLLQKEL 145
NKQDQ A S++ V K L +EL
Sbjct: 135 NKQDQPGALSAAEVEKRLAVREL 157
>sp|Q2TA37|ARL2_BOVIN ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=1
SV=1
Length = 184
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED 66
+K + +L+ GL +GKT + + +L N+ + + I D+ G+
Sbjct: 12 QKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
LR+ ++ Y S G+++V+DS+ Q+ ++D L +L + ++ + +L+ NKQ
Sbjct: 72 SLRS-YWRNYFESTDGLIWVVDSADRQR-MQDCQRELQNLLVEERLAGA--TLLIFANKQ 127
Query: 127 DQTLAKSSSVVKTLLQKELNLVR 149
D A SS+ ++ L EL+ +R
Sbjct: 128 DLPGALSSNAIREAL--ELDSIR 148
>sp|Q5H913|AR13A_HUMAN ADP-ribosylation factor-like protein 13A OS=Homo sapiens GN=ARL13A
PE=2 SV=2
Length = 290
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 11/136 (8%)
Query: 14 VLLSGLSLSGKTLL---FARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70
+ + GL+ SGKT+L F +L+ SK + C +K + ++ + I DL G+ + R
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPSKT-DHC--MKSELTTLLLDEYELSIYDLNGDLKGRE 80
Query: 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130
+ + Y + A G+V+VLDSS +++ +++V L +L+D +V + IL NKQD+
Sbjct: 81 AWPNYY-AQAHGLVFVLDSSDIRR-MQEVKIILTHLLSDKRVAGKPILILA--NKQDKKK 136
Query: 131 A-KSSSVVKTLLQKEL 145
A ++ LL K+L
Sbjct: 137 ALMPCDIIDYLLLKKL 152
>sp|P40616|ARL1_HUMAN ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1
SV=1
Length = 181
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + RL + + ++ NV TY+ ++ DL G+ +R ++
Sbjct: 20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR-PYW 78
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y S+ ++YV+DS + +E L +L + +++ + ++V NKQD A +
Sbjct: 79 RCYYSNTDAVIYVVDSCDRDRIGISKSE-LVAMLEEEELR--KAILVVFANKQDMEQAMT 135
Query: 134 SS 135
SS
Sbjct: 136 SS 137
>sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana
GN=At2g18390 PE=2 SV=1
Length = 185
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL SGKT + ++ +L N+ Y+K + I D+ G+ +R+ ++
Sbjct: 19 ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRS-YW 77
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y G+V+V+DSS +++ L D L +L + ++ S ++L+ NKQD A +
Sbjct: 78 RNYFEQTDGLVWVVDSSDLRR-LDDCKMELDNLLKEERLAGS--SLLILANKQDIQGALT 134
Query: 134 SSVVKTLLQKE 144
+ +L E
Sbjct: 135 PDEIGKVLNLE 145
>sp|Q8N4G2|ARL14_HUMAN ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14
PE=1 SV=2
Length = 192
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKK-NIKIVDLPGED 66
++ Q VLL GL +GK+ L +L +K + ++ NV E+ ++ + D+ G++
Sbjct: 10 QTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSLTVWDVGGQE 69
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
++R + Y + G+VYV+DS+ Q+ L + IL + +++ V +++ NKQ
Sbjct: 70 KMRT-VWGCYCENTDGLVYVVDSTDKQR-LEESQRQFEHILKNEHIKN--VPVVLLANKQ 125
Query: 127 DQTLA 131
D A
Sbjct: 126 DMPGA 130
>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1
SV=1
Length = 184
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGED 66
+K + +L+ GL +GKT + + +L N+ + + I D+ G+
Sbjct: 12 QKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
LR+ ++ Y S G+++V+DS+ Q+ ++D L +L + ++ + +L+ NKQ
Sbjct: 72 SLRS-YWRNYFESTDGLIWVVDSADRQR-MQDCQRELQSLLVEERLAGA--TLLIFANKQ 127
Query: 127 DQTLAKSSSVVKTLLQKELNLVR 149
D A S + ++ L EL+ +R
Sbjct: 128 DLPGALSCNAIQEAL--ELDSIR 148
>sp|Q18510|ARL6_CAEEL ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans
GN=arl-6 PE=2 SV=1
Length = 190
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 14 VLLSGLSLSGKTLLFARL--VYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
+++ GL SGKT + +L ++ + ++ V NF+ + + D+ G+ + R+
Sbjct: 20 IVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRST 79
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ + Y S++G+++VLDSS + + + + L +++ V S + I++ NK D A
Sbjct: 80 W-ESYFHSSQGVIFVLDSSDRLR-MELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGA 137
Query: 132 KSSSVVKTLLQKELNLVR 149
++S + L LNL R
Sbjct: 138 MTASDITVALG--LNLYR 153
>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2
PE=1 SV=1
Length = 184
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + + +L N+ + + I D+ G+ LR+ ++
Sbjct: 19 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS-YW 77
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y S G+++V+DS+ Q+ ++D L +L + ++ + +L+ NKQD A S
Sbjct: 78 RNYFESTDGLIWVVDSADRQR-MQDCQRELQSLLVEERLAGA--TLLIFANKQDLPGALS 134
Query: 134 SSVVKTLLQKELNLVR 149
+ ++ L EL+ +R
Sbjct: 135 CNAIQEAL--ELDSIR 148
>sp|P61212|ARL1_RAT ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1
PE=1 SV=1
Length = 181
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 14 VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFF 73
+L+ GL +GKT + RL + + ++ NV TY+ ++ DL G+ +R ++
Sbjct: 20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR-PYW 78
Query: 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133
Y S+ ++YV+DS + +++S V + + + + + ++V NKQD A +
Sbjct: 79 RCYYSNTDAVIYVVDSCDRDRI--GISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT 135
Query: 134 SS 135
S
Sbjct: 136 PS 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,682,700
Number of Sequences: 539616
Number of extensions: 2533173
Number of successful extensions: 8678
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 8624
Number of HSP's gapped (non-prelim): 113
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)