Query psy4433
Match_columns 211
No_of_seqs 179 out of 1981
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 16:56:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_B SR-beta, signal recogni 100.0 6.2E-35 2.1E-39 221.1 21.2 201 7-210 3-212 (214)
2 4dkx_A RAS-related protein RAB 100.0 1.8E-32 6E-37 208.1 16.1 157 8-210 10-172 (216)
3 1fzq_A ADP-ribosylation factor 100.0 1.6E-31 5.5E-36 197.6 18.0 161 9-210 14-174 (181)
4 1upt_A ARL1, ADP-ribosylation 100.0 3.5E-31 1.2E-35 193.2 18.2 162 8-210 4-165 (171)
5 1r8s_A ADP-ribosylation factor 100.0 3.1E-31 1.1E-35 192.3 17.7 158 12-210 1-158 (164)
6 1zj6_A ADP-ribosylation factor 100.0 4.9E-31 1.7E-35 195.6 17.1 162 8-210 13-174 (187)
7 2b6h_A ADP-ribosylation factor 100.0 4.5E-31 1.5E-35 197.0 17.0 162 8-210 26-187 (192)
8 1f6b_A SAR1; gtpases, N-termin 100.0 4.7E-31 1.6E-35 197.8 16.9 173 8-210 22-195 (198)
9 1m2o_B GTP-binding protein SAR 100.0 1.1E-30 3.9E-35 194.5 18.3 169 8-210 20-188 (190)
10 1ksh_A ARF-like protein 2; sma 100.0 1.2E-30 4E-35 193.3 16.9 161 9-210 16-176 (186)
11 1zd9_A ADP-ribosylation factor 100.0 2.2E-30 7.4E-35 192.5 17.9 162 8-210 19-181 (188)
12 2x77_A ADP-ribosylation factor 100.0 2.4E-31 8.1E-36 197.6 12.4 161 9-210 20-180 (189)
13 2h17_A ADP-ribosylation factor 100.0 1E-30 3.5E-35 193.1 15.2 162 8-210 18-179 (181)
14 4bas_A ADP-ribosylation factor 100.0 2.6E-30 8.7E-35 193.2 16.6 165 8-210 14-185 (199)
15 2h57_A ADP-ribosylation factor 100.0 4.2E-30 1.4E-34 191.1 16.1 163 9-210 19-183 (190)
16 1moz_A ARL1, ADP-ribosylation 100.0 1.6E-30 5.5E-35 191.8 13.1 161 9-210 16-176 (183)
17 3q72_A GTP-binding protein RAD 100.0 2E-29 6.8E-34 183.1 17.0 155 11-210 2-160 (166)
18 4dsu_A GTPase KRAS, isoform 2B 100.0 3.2E-29 1.1E-33 185.5 16.9 157 9-210 2-162 (189)
19 2nzj_A GTP-binding protein REM 100.0 4.4E-29 1.5E-33 182.6 17.0 157 9-210 2-165 (175)
20 1c1y_A RAS-related protein RAP 100.0 2.3E-29 8E-34 182.6 15.4 157 10-210 2-163 (167)
21 1u8z_A RAS-related protein RAL 100.0 6.5E-29 2.2E-33 180.2 16.7 156 10-210 3-163 (168)
22 2hxs_A RAB-26, RAS-related pro 100.0 2.5E-29 8.7E-34 184.5 14.6 159 8-210 3-169 (178)
23 2fn4_A P23, RAS-related protei 100.0 5.9E-29 2E-33 182.8 15.9 158 8-210 6-168 (181)
24 3o47_A ADP-ribosylation factor 100.0 2.8E-29 9.6E-34 201.9 14.6 161 9-210 163-323 (329)
25 3kkq_A RAS-related protein M-R 100.0 1.5E-28 5.1E-33 181.4 17.0 158 8-210 15-178 (183)
26 1ek0_A Protein (GTP-binding pr 100.0 2E-28 6.7E-33 178.1 17.3 155 10-210 2-165 (170)
27 1kao_A RAP2A; GTP-binding prot 100.0 6.4E-29 2.2E-33 180.1 14.6 156 10-210 2-162 (167)
28 3ihw_A Centg3; RAS, centaurin, 100.0 2.3E-28 7.9E-33 181.1 17.7 154 8-210 17-176 (184)
29 1r2q_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 178.5 16.6 157 8-210 3-165 (170)
30 2bov_A RAla, RAS-related prote 100.0 3E-28 1E-32 182.9 18.1 158 8-210 11-173 (206)
31 2hup_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 184.3 16.3 155 10-210 28-189 (201)
32 1z0j_A RAB-22, RAS-related pro 100.0 2.9E-28 9.9E-33 177.3 16.9 156 9-210 4-165 (170)
33 1x3s_A RAS-related protein RAB 100.0 2.7E-28 9.4E-33 181.5 17.1 156 10-210 14-174 (195)
34 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-28 9.6E-33 179.1 16.9 155 9-210 5-165 (178)
35 3t5g_A GTP-binding protein RHE 100.0 5.6E-29 1.9E-33 183.3 13.0 157 9-210 4-165 (181)
36 2a9k_A RAS-related protein RAL 100.0 2.2E-28 7.5E-33 180.6 16.2 157 8-210 15-177 (187)
37 3q85_A GTP-binding protein REM 100.0 1.4E-28 4.7E-33 179.1 15.0 156 11-210 2-163 (169)
38 2efe_B Small GTP-binding prote 100.0 6.1E-28 2.1E-32 177.6 18.2 157 8-210 9-171 (181)
39 3reg_A RHO-like small GTPase; 100.0 9.9E-29 3.4E-33 184.2 14.1 156 9-210 21-184 (194)
40 2fu5_C RAS-related protein RAB 100.0 5.7E-29 2E-33 183.6 12.6 156 9-210 6-167 (183)
41 3bc1_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 180.6 16.9 157 9-210 9-181 (195)
42 2ce2_X GTPase HRAS; signaling 100.0 4.2E-28 1.4E-32 175.4 16.9 155 11-210 3-161 (166)
43 3lvq_E ARF-GAP with SH3 domain 100.0 1.1E-28 3.8E-33 208.7 16.1 161 9-210 320-480 (497)
44 3tkl_A RAS-related protein RAB 100.0 3.7E-28 1.3E-32 181.0 16.6 155 10-210 15-175 (196)
45 2ew1_A RAS-related protein RAB 100.0 2.6E-28 8.7E-33 183.4 15.7 155 10-210 25-185 (201)
46 1g16_A RAS-related protein SEC 100.0 1.8E-28 6.3E-33 178.4 14.5 155 10-210 2-161 (170)
47 3cbq_A GTP-binding protein REM 100.0 4.9E-28 1.7E-32 181.0 16.1 159 8-210 20-184 (195)
48 2y8e_A RAB-protein 6, GH09086P 100.0 5.1E-28 1.7E-32 177.5 15.9 155 10-210 13-173 (179)
49 1z2a_A RAS-related protein RAB 100.0 2.3E-28 8E-33 177.5 13.9 155 9-210 3-163 (168)
50 2bme_A RAB4A, RAS-related prot 100.0 4.5E-28 1.5E-32 179.1 15.7 156 9-210 8-169 (186)
51 1z08_A RAS-related protein RAB 100.0 2E-28 6.9E-33 178.3 13.6 157 8-210 3-165 (170)
52 1z06_A RAS-related protein RAB 100.0 6.4E-28 2.2E-32 179.1 16.6 158 9-210 18-184 (189)
53 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.3E-28 1.8E-32 177.3 15.9 161 8-210 4-170 (177)
54 3oes_A GTPase rhebl1; small GT 100.0 1.4E-28 4.8E-33 184.5 12.9 157 9-210 22-183 (201)
55 2fg5_A RAB-22B, RAS-related pr 100.0 7.6E-28 2.6E-32 179.3 16.8 156 9-210 21-182 (192)
56 2a5j_A RAS-related protein RAB 100.0 5.2E-28 1.8E-32 180.0 15.8 156 9-210 19-180 (191)
57 3clv_A RAB5 protein, putative; 100.0 1.2E-27 4.2E-32 178.9 17.9 153 9-210 5-200 (208)
58 2atv_A RERG, RAS-like estrogen 100.0 6E-28 2E-32 180.3 16.1 157 8-210 25-187 (196)
59 1z0f_A RAB14, member RAS oncog 100.0 1.2E-27 4E-32 175.5 17.4 156 9-210 13-174 (179)
60 1zbd_A Rabphilin-3A; G protein 100.0 1.7E-27 5.7E-32 178.7 18.6 155 10-210 7-167 (203)
61 3c5c_A RAS-like protein 12; GD 100.0 2.7E-28 9.2E-33 181.1 13.8 159 8-210 18-182 (187)
62 2f7s_A C25KG, RAS-related prot 100.0 3.6E-28 1.2E-32 184.2 14.8 157 9-210 23-195 (217)
63 3tw8_B RAS-related protein RAB 100.0 2.5E-28 8.4E-33 179.5 13.5 156 8-210 6-167 (181)
64 2g6b_A RAS-related protein RAB 100.0 6.3E-28 2.2E-32 177.3 15.6 156 9-210 8-170 (180)
65 3con_A GTPase NRAS; structural 100.0 7.5E-28 2.6E-32 178.7 16.1 158 8-210 18-179 (190)
66 3dz8_A RAS-related protein RAB 100.0 3.3E-28 1.1E-32 181.0 14.1 156 9-210 21-182 (191)
67 2erx_A GTP-binding protein DI- 100.0 6.5E-28 2.2E-32 175.7 15.3 157 10-210 2-163 (172)
68 2gf0_A GTP-binding protein DI- 100.0 9E-28 3.1E-32 179.3 16.3 159 8-210 5-167 (199)
69 2oil_A CATX-8, RAS-related pro 100.0 1.3E-27 4.3E-32 178.0 16.8 156 9-210 23-184 (193)
70 2q3h_A RAS homolog gene family 100.0 6.3E-28 2.2E-32 180.7 14.6 157 8-210 17-191 (201)
71 2il1_A RAB12; G-protein, GDP, 100.0 7.3E-28 2.5E-32 179.4 14.8 157 9-210 24-186 (192)
72 2p5s_A RAS and EF-hand domain 100.0 1.3E-27 4.3E-32 179.0 16.1 156 9-210 26-193 (199)
73 1nrj_B SR-beta, signal recogni 100.0 1E-27 3.5E-32 181.8 15.7 192 7-210 8-216 (218)
74 2gf9_A RAS-related protein RAB 100.0 1E-27 3.6E-32 178.0 15.3 156 9-210 20-181 (189)
75 2g3y_A GTP-binding protein GEM 100.0 2E-27 6.7E-32 179.8 16.9 157 9-210 35-199 (211)
76 3cph_A RAS-related protein SEC 100.0 1.4E-27 4.9E-32 180.1 16.1 156 9-210 18-178 (213)
77 3q3j_B RHO-related GTP-binding 100.0 6.8E-28 2.3E-32 182.7 14.0 117 9-131 25-146 (214)
78 2atx_A Small GTP binding prote 100.0 6.8E-28 2.3E-32 179.6 13.6 116 10-131 17-137 (194)
79 3bwd_D RAC-like GTP-binding pr 100.0 1.3E-28 4.4E-33 181.3 9.3 156 9-210 6-177 (182)
80 2bcg_Y Protein YP2, GTP-bindin 100.0 1.5E-27 5.2E-32 179.4 15.3 156 9-210 6-167 (206)
81 2j0v_A RAC-like GTP-binding pr 100.0 3E-28 1E-32 184.1 11.4 156 9-210 7-176 (212)
82 4gzl_A RAS-related C3 botulinu 100.0 6.3E-28 2.1E-32 181.5 12.8 171 8-210 27-201 (204)
83 2j1l_A RHO-related GTP-binding 100.0 1.1E-27 3.7E-32 181.5 14.0 169 9-210 32-205 (214)
84 2o52_A RAS-related protein RAB 100.0 1.2E-27 4.1E-32 179.4 14.1 156 9-210 23-184 (200)
85 2gco_A H9, RHO-related GTP-bin 100.0 1.4E-27 4.9E-32 179.1 14.3 171 8-210 22-196 (201)
86 3t1o_A Gliding protein MGLA; G 100.0 9.4E-28 3.2E-32 178.8 12.9 155 8-210 11-188 (198)
87 1ky3_A GTP-binding protein YPT 100.0 1.4E-27 4.7E-32 175.6 13.6 162 7-210 4-174 (182)
88 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.3E-27 4.4E-32 176.5 13.4 169 9-210 3-176 (186)
89 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-27 3.7E-32 177.2 12.6 117 8-130 4-125 (184)
90 2yc2_C IFT27, small RAB-relate 100.0 6E-28 2E-32 181.4 11.1 159 9-210 18-188 (208)
91 1vg8_A RAS-related protein RAB 100.0 1.5E-27 5.1E-32 179.3 13.3 162 7-210 4-171 (207)
92 2fv8_A H6, RHO-related GTP-bin 99.9 2.9E-27 1E-31 178.1 14.1 170 9-210 23-196 (207)
93 3cpj_B GTP-binding protein YPT 99.9 3.3E-27 1.1E-31 179.9 13.9 156 9-210 11-172 (223)
94 4djt_A GTP-binding nuclear pro 99.9 1.3E-27 4.4E-32 181.3 10.4 158 8-210 8-171 (218)
95 3gj0_A GTP-binding nuclear pro 99.9 1.2E-27 4.2E-32 181.9 9.8 156 7-210 11-171 (221)
96 1gwn_A RHO-related GTP-binding 99.9 3.8E-27 1.3E-31 177.5 12.3 117 8-130 25-146 (205)
97 2cjw_A GTP-binding protein GEM 99.9 1.8E-26 6.3E-31 172.0 15.0 157 9-210 4-168 (192)
98 2wji_A Ferrous iron transport 99.9 7.2E-27 2.5E-31 170.0 12.0 149 11-210 3-161 (165)
99 2lkc_A Translation initiation 99.9 1.9E-26 6.6E-31 169.1 13.4 161 7-210 4-167 (178)
100 3llu_A RAS-related GTP-binding 99.9 5.4E-26 1.8E-30 169.8 15.8 168 8-210 17-193 (196)
101 2zej_A Dardarin, leucine-rich 99.9 1.2E-26 4.2E-31 171.7 11.5 162 11-210 2-174 (184)
102 3l0i_B RAS-related protein RAB 99.9 2.5E-28 8.4E-33 182.9 0.6 155 10-210 32-192 (199)
103 3pqc_A Probable GTP-binding pr 99.9 3.2E-25 1.1E-29 164.7 16.6 155 9-210 21-190 (195)
104 1svi_A GTP-binding protein YSX 99.9 4.4E-25 1.5E-29 164.3 16.9 155 9-210 21-191 (195)
105 3th5_A RAS-related C3 botulinu 99.9 7.3E-28 2.5E-32 180.9 0.0 170 9-210 28-201 (204)
106 2qu8_A Putative nucleolar GTP- 99.9 8.6E-25 2.9E-29 167.1 16.8 160 9-210 27-201 (228)
107 3iby_A Ferrous iron transport 99.9 8.6E-26 2.9E-30 175.5 11.2 149 12-211 2-164 (256)
108 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-25 4.4E-30 166.2 11.2 151 9-210 5-165 (188)
109 4dhe_A Probable GTP-binding pr 99.9 8.3E-25 2.8E-29 166.2 14.7 162 9-210 27-207 (223)
110 3b1v_A Ferrous iron uptake tra 99.9 2.1E-25 7.2E-30 174.6 11.4 149 11-210 3-160 (272)
111 3i8s_A Ferrous iron transport 99.9 1.5E-25 5.2E-30 175.9 9.6 150 10-210 2-165 (274)
112 2cxx_A Probable GTP-binding pr 99.9 4.9E-25 1.7E-29 163.1 11.7 157 12-210 2-180 (190)
113 3a1s_A Iron(II) transport prot 99.9 2.6E-25 9.1E-30 173.0 10.6 151 9-210 3-163 (258)
114 2dyk_A GTP-binding protein; GT 99.9 5.7E-25 1.9E-29 158.6 11.6 146 12-210 2-158 (161)
115 2wkq_A NPH1-1, RAS-related C3 99.9 1.1E-24 3.7E-29 174.9 14.1 170 8-210 152-326 (332)
116 3r7w_A Gtpase1, GTP-binding pr 99.9 2.7E-24 9.2E-29 171.4 15.6 115 10-130 2-129 (307)
117 2gj8_A MNME, tRNA modification 99.9 4.7E-25 1.6E-29 161.5 8.9 150 9-210 2-162 (172)
118 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-24 7.2E-29 171.4 11.4 163 13-210 1-170 (331)
119 2f9l_A RAB11B, member RAS onco 99.9 1.6E-23 5.5E-28 156.7 15.7 155 10-210 4-164 (199)
120 3iev_A GTP-binding protein ERA 99.9 1.4E-23 4.7E-28 167.3 15.6 156 8-210 7-178 (308)
121 3k53_A Ferrous iron transport 99.9 4.9E-24 1.7E-28 167.0 10.6 151 10-210 2-162 (271)
122 3c5h_A Glucocorticoid receptor 99.9 2.3E-25 8E-30 173.1 2.8 157 9-210 17-251 (255)
123 1oix_A RAS-related protein RAB 99.9 7.8E-23 2.7E-27 152.1 14.5 154 11-210 29-188 (191)
124 1wf3_A GTP-binding protein; GT 99.9 3.1E-23 1.1E-27 164.6 12.5 151 11-210 7-169 (301)
125 2ged_A SR-beta, signal recogni 99.9 4.4E-23 1.5E-27 153.2 11.5 140 8-150 45-190 (193)
126 3sjy_A Translation initiation 99.9 7.4E-23 2.5E-27 168.8 13.9 162 7-210 4-188 (403)
127 2hjg_A GTP-binding protein ENG 99.9 5.4E-23 1.9E-27 171.2 12.6 156 10-210 174-345 (436)
128 3gee_A MNME, tRNA modification 99.9 1.8E-23 6.3E-28 175.0 9.3 150 9-210 231-394 (476)
129 3dpu_A RAB family protein; roc 99.9 3.8E-23 1.3E-27 176.2 10.5 154 8-210 38-204 (535)
130 4dcu_A GTP-binding protein ENG 99.9 2.3E-22 7.9E-27 168.3 13.5 157 9-210 193-365 (456)
131 1cip_A Protein (guanine nucleo 99.9 3.2E-22 1.1E-26 161.6 13.5 136 41-210 179-340 (353)
132 1wb1_A Translation elongation 99.9 2.4E-22 8.2E-27 168.9 13.1 159 9-210 17-185 (482)
133 3j2k_7 ERF3, eukaryotic polype 99.9 1.7E-21 5.8E-26 162.1 17.2 163 8-205 14-216 (439)
134 1xzp_A Probable tRNA modificat 99.9 3.2E-22 1.1E-26 167.6 12.1 148 10-210 242-401 (482)
135 1mky_A Probable GTP-binding pr 99.9 4.2E-22 1.4E-26 165.9 12.7 109 12-129 2-123 (439)
136 1s0u_A EIF-2-gamma, translatio 99.9 1.6E-21 5.6E-26 161.0 16.1 161 8-210 5-194 (408)
137 2qtf_A Protein HFLX, GTP-bindi 99.9 3.1E-21 1.1E-25 156.7 16.8 160 11-210 178-350 (364)
138 2e87_A Hypothetical protein PH 99.9 1.1E-21 3.9E-26 159.3 14.2 156 9-210 165-332 (357)
139 1kk1_A EIF2gamma; initiation o 99.9 1.4E-21 4.9E-26 161.4 14.0 162 7-210 6-196 (410)
140 3qq5_A Small GTP-binding prote 99.9 5.1E-23 1.7E-27 169.8 5.1 151 8-210 31-192 (423)
141 3izy_P Translation initiation 99.9 7.4E-24 2.5E-28 179.0 0.2 158 10-210 3-164 (537)
142 1lnz_A SPO0B-associated GTP-bi 99.9 3.3E-22 1.1E-26 161.0 9.4 154 12-210 159-326 (342)
143 3ohm_A Guanine nucleotide-bind 99.9 2.3E-21 8E-26 154.6 13.5 134 41-210 153-314 (327)
144 1zun_B Sulfate adenylate trans 99.9 4.7E-21 1.6E-25 159.4 15.4 115 9-131 22-172 (434)
145 3tr5_A RF-3, peptide chain rel 99.9 8.6E-21 2.9E-25 160.7 16.9 127 10-146 12-163 (528)
146 2xtp_A GTPase IMAP family memb 99.9 2.5E-21 8.6E-26 150.6 12.4 119 9-131 20-154 (260)
147 3p26_A Elongation factor 1 alp 99.9 2.7E-21 9.3E-26 162.8 13.5 157 8-203 30-227 (483)
148 2hjg_A GTP-binding protein ENG 99.9 3.4E-22 1.1E-26 166.4 7.3 147 11-210 3-161 (436)
149 3geh_A MNME, tRNA modification 99.9 5.3E-22 1.8E-26 165.6 8.2 148 9-210 222-380 (462)
150 1zcb_A G alpha I/13; GTP-bindi 99.9 3.5E-21 1.2E-25 156.0 12.8 84 43-129 189-281 (362)
151 1ega_A Protein (GTP-binding pr 99.9 2.4E-21 8.1E-26 153.9 10.7 152 11-210 8-171 (301)
152 1g7s_A Translation initiation 99.8 3.9E-21 1.3E-25 164.7 11.8 176 9-210 3-214 (594)
153 1mky_A Probable GTP-binding pr 99.8 1.1E-20 3.8E-25 157.3 14.2 156 10-210 179-351 (439)
154 1jny_A EF-1-alpha, elongation 99.8 1.8E-20 6E-25 155.9 15.0 115 9-131 4-159 (435)
155 2elf_A Protein translation elo 99.8 8.4E-21 2.9E-25 154.5 12.3 147 13-210 23-176 (370)
156 3t5d_A Septin-7; GTP-binding p 99.8 5.3E-21 1.8E-25 150.0 10.3 154 10-210 7-200 (274)
157 3cb4_D GTP-binding protein LEP 99.8 2.1E-20 7.2E-25 160.1 14.8 152 11-210 4-178 (599)
158 3izq_1 HBS1P, elongation facto 99.8 1.7E-20 5.8E-25 161.5 14.2 118 8-131 164-320 (611)
159 2ywe_A GTP-binding protein LEP 99.8 2.2E-20 7.4E-25 159.8 14.6 153 10-210 5-180 (600)
160 1zo1_I IF2, translation initia 99.8 1E-21 3.4E-26 164.8 5.9 159 9-210 2-163 (501)
161 4fid_A G protein alpha subunit 99.8 3.9E-20 1.3E-24 148.1 14.4 86 41-130 147-242 (340)
162 3lxx_A GTPase IMAP family memb 99.8 2.5E-20 8.6E-25 143.3 12.6 121 9-134 27-163 (239)
163 3lxw_A GTPase IMAP family memb 99.8 3.6E-20 1.2E-24 143.1 13.0 121 8-131 18-154 (247)
164 1f60_A Elongation factor EEF1A 99.8 4.2E-20 1.4E-24 154.5 13.7 116 8-130 4-159 (458)
165 2c78_A Elongation factor TU-A; 99.8 4.7E-20 1.6E-24 152.2 13.0 115 7-130 7-142 (405)
166 1r5b_A Eukaryotic peptide chai 99.8 3.6E-20 1.2E-24 155.3 11.9 116 9-131 41-196 (467)
167 2xtz_A Guanine nucleotide-bind 99.8 1.3E-20 4.6E-25 152.1 8.9 72 55-130 183-264 (354)
168 4dcu_A GTP-binding protein ENG 99.8 8.9E-21 3E-25 158.7 7.6 111 10-129 22-144 (456)
169 1d2e_A Elongation factor TU (E 99.8 5.6E-20 1.9E-24 151.3 11.6 112 10-130 2-133 (397)
170 2aka_B Dynamin-1; fusion prote 99.8 3.5E-20 1.2E-24 146.8 8.6 156 9-210 24-249 (299)
171 3mca_A HBS1, elongation factor 99.8 3.5E-21 1.2E-25 165.4 2.1 116 8-130 174-329 (592)
172 1pui_A ENGB, probable GTP-bind 99.8 1.1E-18 3.6E-23 131.2 13.8 155 9-210 24-195 (210)
173 3avx_A Elongation factor TS, e 99.8 8.1E-19 2.8E-23 157.5 14.6 161 8-210 293-482 (1289)
174 1dar_A EF-G, elongation factor 99.8 1.8E-18 6.2E-23 151.0 15.7 128 8-145 9-157 (691)
175 2h5e_A Peptide chain release f 99.8 1E-18 3.5E-23 148.2 12.7 128 9-146 11-163 (529)
176 2dy1_A Elongation factor G; tr 99.8 1.1E-17 3.7E-22 145.6 17.9 127 9-146 7-154 (665)
177 3def_A T7I23.11 protein; chlor 99.8 3.4E-18 1.2E-22 133.1 11.4 118 9-131 34-166 (262)
178 2xex_A Elongation factor G; GT 99.8 1.6E-17 5.4E-22 145.1 16.7 127 9-145 8-155 (693)
179 2rdo_7 EF-G, elongation factor 99.8 4.7E-17 1.6E-21 142.3 19.3 127 9-145 8-162 (704)
180 2qag_A Septin-2, protein NEDD5 99.8 5.7E-19 1.9E-23 143.4 5.8 116 9-133 35-191 (361)
181 2j69_A Bacterial dynamin-like 99.8 2.2E-17 7.5E-22 144.3 15.9 117 8-131 66-245 (695)
182 1jwy_B Dynamin A GTPase domain 99.7 8.1E-18 2.8E-22 134.2 9.9 118 9-133 22-215 (315)
183 1azs_C GS-alpha; complex (lyas 99.7 1.9E-17 6.6E-22 135.3 11.5 85 41-129 203-297 (402)
184 1udx_A The GTP-binding protein 99.7 7.5E-17 2.6E-21 132.7 13.8 152 12-210 158-321 (416)
185 1h65_A Chloroplast outer envel 99.7 5.1E-17 1.8E-21 127.0 10.8 121 9-132 37-170 (270)
186 3vqt_A RF-3, peptide chain rel 99.7 7.9E-16 2.7E-20 131.0 18.4 127 10-146 30-181 (548)
187 3p32_A Probable GTPase RV1496/ 99.7 6.9E-17 2.4E-21 131.0 10.8 156 8-210 76-280 (355)
188 3l82_B F-box only protein 4; T 99.7 6.3E-17 2.1E-21 119.8 8.5 160 8-210 13-219 (227)
189 3t34_A Dynamin-related protein 99.7 2.3E-17 7.9E-22 134.1 6.5 117 10-133 33-220 (360)
190 2x2e_A Dynamin-1; nitration, h 99.7 1.2E-17 4E-22 135.4 4.7 156 10-210 30-254 (353)
191 1wxq_A GTP-binding protein; st 99.7 7.6E-17 2.6E-21 132.3 7.9 81 12-92 1-114 (397)
192 2www_A Methylmalonic aciduria 99.7 3.6E-16 1.2E-20 126.4 10.7 154 10-210 73-275 (349)
193 2qnr_A Septin-2, protein NEDD5 99.7 4.6E-17 1.6E-21 129.1 5.2 152 10-210 17-210 (301)
194 2qpt_A EH domain-containing pr 99.7 6.1E-16 2.1E-20 131.8 11.6 118 9-134 63-236 (550)
195 1u0l_A Probable GTPase ENGC; p 99.6 5.7E-17 1.9E-21 128.6 2.8 134 26-209 32-168 (301)
196 1n0u_A EF-2, elongation factor 99.6 1.2E-15 4E-20 135.9 11.2 112 10-130 18-164 (842)
197 1jal_A YCHF protein; nucleotid 99.6 2.3E-14 8E-19 115.6 16.5 81 11-91 2-108 (363)
198 2p67_A LAO/AO transport system 99.6 9.6E-16 3.3E-20 123.6 8.4 155 9-210 54-257 (341)
199 2wsm_A Hydrogenase expression/ 99.6 2.3E-15 7.8E-20 113.9 8.2 145 10-210 29-210 (221)
200 3l2o_B F-box only protein 4; s 99.6 1.4E-15 4.7E-20 117.9 6.2 106 62-210 194-304 (312)
201 4a9a_A Ribosome-interacting GT 99.6 9.9E-15 3.4E-19 118.4 10.9 114 11-129 72-195 (376)
202 1yrb_A ATP(GTP)binding protein 99.6 1.2E-14 4.2E-19 112.7 10.6 71 56-132 110-187 (262)
203 2dby_A GTP-binding protein; GD 99.6 2.1E-14 7.1E-19 116.5 11.7 79 12-91 2-111 (368)
204 3j25_A Tetracycline resistance 99.6 4.3E-15 1.5E-19 128.8 8.1 114 12-134 3-137 (638)
205 2qag_C Septin-7; cell cycle, c 99.6 2.6E-15 9E-20 123.6 5.7 126 11-145 31-196 (418)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 5E-14 1.7E-18 123.0 10.9 156 10-210 50-274 (772)
207 4fn5_A EF-G 1, elongation fact 99.5 2.9E-13 1E-17 118.7 15.1 124 12-145 14-165 (709)
208 2hf9_A Probable hydrogenase ni 99.5 4.8E-13 1.7E-17 101.3 10.7 28 9-36 36-63 (226)
209 2qm8_A GTPase/ATPase; G protei 99.4 2.6E-13 8.8E-18 109.1 6.9 155 9-210 53-257 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 7.4E-12 2.5E-16 102.0 10.5 86 6-91 17-128 (396)
211 2j37_W Signal recognition part 99.1 6E-10 2E-14 93.7 13.4 111 10-131 100-255 (504)
212 3ec1_A YQEH GTPase; atnos1, at 99.1 1.8E-11 6.2E-16 99.5 4.0 125 11-146 162-304 (369)
213 2yv5_A YJEQ protein; hydrolase 99.1 5.6E-11 1.9E-15 94.1 5.4 99 65-209 66-164 (302)
214 3h2y_A GTPase family protein; 99.0 6.3E-10 2.1E-14 90.4 8.9 127 10-147 159-304 (368)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 7.5E-10 2.6E-14 90.3 9.3 84 7-91 16-127 (392)
216 2qag_B Septin-6, protein NEDD5 98.9 1.5E-08 5E-13 83.4 11.1 122 12-143 43-203 (427)
217 3h2y_A GTPase family protein; 98.9 4E-09 1.4E-13 85.7 7.7 101 64-210 55-156 (368)
218 3sop_A Neuronal-specific septi 98.9 1.8E-08 6.2E-13 78.4 10.9 127 11-146 2-170 (270)
219 1tq4_A IIGP1, interferon-induc 98.8 2E-07 6.8E-12 76.6 15.8 110 10-129 68-188 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 1.1E-08 3.8E-13 83.1 7.5 100 64-210 57-158 (369)
221 1puj_A YLQF, conserved hypothe 98.8 1.2E-08 4E-13 80.0 7.0 99 59-210 3-102 (282)
222 1puj_A YLQF, conserved hypothe 98.7 3.2E-08 1.1E-12 77.5 6.0 57 9-66 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 1.3E-08 4.6E-13 78.8 3.2 55 12-67 100-156 (262)
224 3cnl_A YLQF, putative uncharac 98.5 3.2E-08 1.1E-12 76.7 1.3 94 62-210 4-97 (262)
225 1f5n_A Interferon-induced guan 98.4 2.5E-07 8.6E-12 79.1 5.3 63 5-67 32-103 (592)
226 2v3c_C SRP54, signal recogniti 98.4 5.5E-07 1.9E-11 74.5 6.1 109 11-130 99-252 (432)
227 3szr_A Interferon-induced GTP- 98.3 1.9E-06 6.6E-11 74.3 9.3 24 12-35 46-69 (608)
228 3dm5_A SRP54, signal recogniti 98.3 2.6E-06 8.8E-11 70.4 8.3 111 10-130 99-253 (443)
229 3kl4_A SRP54, signal recogniti 98.2 3E-05 1E-09 64.0 12.5 110 10-129 96-251 (433)
230 1t9h_A YLOQ, probable GTPase E 98.1 3.3E-06 1.1E-10 66.7 4.8 51 75-131 82-132 (307)
231 1j8m_F SRP54, signal recogniti 98.0 1.3E-05 4.5E-10 63.1 7.1 108 11-129 98-252 (297)
232 1bif_A 6-phosphofructo-2-kinas 97.8 5.6E-06 1.9E-10 69.3 1.9 84 9-93 37-134 (469)
233 1rj9_A FTSY, signal recognitio 97.8 7.6E-05 2.6E-09 58.9 7.5 24 10-33 101-124 (304)
234 2xxa_A Signal recognition part 97.7 0.00011 3.9E-09 60.7 7.6 67 54-131 183-255 (433)
235 3e70_C DPA, signal recognition 97.7 4.3E-05 1.5E-09 60.9 5.0 25 9-33 127-151 (328)
236 2rcn_A Probable GTPase ENGC; Y 97.7 6.9E-05 2.4E-09 60.3 6.1 48 77-131 128-175 (358)
237 2yhs_A FTSY, cell division pro 97.7 3.9E-05 1.3E-09 64.1 4.8 24 10-33 292-315 (503)
238 3q5d_A Atlastin-1; G protein, 97.5 0.00011 3.7E-09 60.9 5.5 24 10-33 66-89 (447)
239 2px0_A Flagellar biosynthesis 97.5 0.00011 3.8E-09 57.7 5.0 24 10-33 104-127 (296)
240 1vma_A Cell division protein F 97.5 0.00021 7E-09 56.4 6.3 23 11-33 104-126 (306)
241 1ye8_A Protein THEP1, hypothet 97.4 8.3E-05 2.8E-09 54.0 3.4 23 12-34 1-23 (178)
242 1lvg_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 54.4 3.0 23 11-33 4-26 (198)
243 2bbw_A Adenylate kinase 4, AK4 97.3 0.00013 4.5E-09 55.5 3.7 29 4-32 20-48 (246)
244 1kgd_A CASK, peripheral plasma 97.3 0.00015 5E-09 52.6 3.7 24 11-34 5-28 (180)
245 2ffh_A Protein (FFH); SRP54, s 97.3 0.00034 1.2E-08 57.6 5.7 23 11-33 98-120 (425)
246 1zu4_A FTSY; GTPase, signal re 97.2 0.001 3.5E-08 52.8 7.7 23 11-33 105-127 (320)
247 3a00_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 52.2 3.0 21 13-33 3-23 (186)
248 3c8u_A Fructokinase; YP_612366 97.2 0.00021 7.2E-09 52.9 3.3 25 9-33 20-44 (208)
249 3tr0_A Guanylate kinase, GMP k 97.2 0.00028 9.7E-09 51.8 3.7 24 11-34 7-30 (205)
250 1znw_A Guanylate kinase, GMP k 97.1 0.00022 7.7E-09 52.7 3.0 24 11-34 20-43 (207)
251 1zp6_A Hypothetical protein AT 97.1 0.00029 9.9E-09 51.2 3.5 25 10-34 8-32 (191)
252 1z6g_A Guanylate kinase; struc 97.1 0.00024 8.1E-09 53.2 3.0 24 11-34 23-46 (218)
253 3ney_A 55 kDa erythrocyte memb 97.1 0.00034 1.2E-08 51.5 3.7 25 10-34 18-42 (197)
254 3tau_A Guanylate kinase, GMP k 97.1 0.00038 1.3E-08 51.6 3.8 27 9-35 6-32 (208)
255 1s96_A Guanylate kinase, GMP k 97.1 0.00037 1.3E-08 52.3 3.6 24 11-34 16-39 (219)
256 3asz_A Uridine kinase; cytidin 97.1 0.00035 1.2E-08 51.7 3.3 25 9-33 4-28 (211)
257 4gp7_A Metallophosphoesterase; 97.0 0.00027 9.2E-09 50.7 2.5 23 11-33 9-31 (171)
258 1ex7_A Guanylate kinase; subst 97.0 0.00037 1.3E-08 50.9 3.1 21 14-34 4-24 (186)
259 2j41_A Guanylate kinase; GMP, 97.0 0.00047 1.6E-08 50.6 3.7 26 10-35 5-30 (207)
260 3tif_A Uncharacterized ABC tra 97.0 0.00033 1.1E-08 53.1 2.8 24 11-34 31-54 (235)
261 1kag_A SKI, shikimate kinase I 97.0 0.00046 1.6E-08 49.2 3.2 22 12-33 5-26 (173)
262 2pcj_A ABC transporter, lipopr 96.9 0.00041 1.4E-08 52.1 2.8 24 11-34 30-53 (224)
263 1htw_A HI0065; nucleotide-bind 96.9 0.00049 1.7E-08 48.8 3.0 26 10-35 32-57 (158)
264 2rcn_A Probable GTPase ENGC; Y 96.9 0.00052 1.8E-08 55.2 3.4 26 11-36 215-240 (358)
265 2qor_A Guanylate kinase; phosp 96.9 0.00055 1.9E-08 50.4 3.3 24 10-33 11-34 (204)
266 2onk_A Molybdate/tungstate ABC 96.9 0.00051 1.8E-08 52.2 3.2 23 12-34 25-47 (240)
267 4eun_A Thermoresistant glucoki 96.9 0.00067 2.3E-08 49.8 3.6 24 10-33 28-51 (200)
268 1cke_A CK, MSSA, protein (cyti 96.9 0.00076 2.6E-08 50.3 3.8 23 11-33 5-27 (227)
269 1knq_A Gluconate kinase; ALFA/ 96.9 0.00074 2.5E-08 48.3 3.6 24 10-33 7-30 (175)
270 2i3b_A HCR-ntpase, human cance 96.9 0.00054 1.9E-08 50.1 2.8 22 13-34 3-24 (189)
271 2bdt_A BH3686; alpha-beta prot 96.9 0.00058 2E-08 49.5 3.0 21 13-33 4-24 (189)
272 1sgw_A Putative ABC transporte 96.9 0.00054 1.8E-08 51.2 2.9 23 12-34 36-58 (214)
273 3gfo_A Cobalt import ATP-bindi 96.9 0.00052 1.8E-08 53.3 2.9 24 11-34 34-57 (275)
274 1b0u_A Histidine permease; ABC 96.9 0.00054 1.8E-08 52.8 2.9 24 11-34 32-55 (262)
275 3lw7_A Adenylate kinase relate 96.9 0.0007 2.4E-08 48.0 3.3 20 12-31 2-21 (179)
276 1mv5_A LMRA, multidrug resista 96.8 0.00061 2.1E-08 51.9 3.1 24 11-34 28-51 (243)
277 1aky_A Adenylate kinase; ATP:A 96.8 0.00079 2.7E-08 50.2 3.7 25 9-33 2-26 (220)
278 3t61_A Gluconokinase; PSI-biol 96.8 0.00073 2.5E-08 49.6 3.4 23 11-33 18-40 (202)
279 2ff7_A Alpha-hemolysin translo 96.8 0.00061 2.1E-08 52.0 3.0 24 11-34 35-58 (247)
280 3kb2_A SPBC2 prophage-derived 96.8 0.00075 2.6E-08 47.9 3.3 21 13-33 3-23 (173)
281 2v9p_A Replication protein E1; 96.8 0.00081 2.8E-08 52.9 3.7 25 9-33 124-148 (305)
282 1g6h_A High-affinity branched- 96.8 0.00058 2E-08 52.4 2.8 24 11-34 33-56 (257)
283 2pze_A Cystic fibrosis transme 96.8 0.00066 2.3E-08 51.2 3.1 24 11-34 34-57 (229)
284 3b85_A Phosphate starvation-in 96.8 0.00058 2E-08 50.7 2.7 23 12-34 23-45 (208)
285 4g1u_C Hemin import ATP-bindin 96.8 0.00066 2.2E-08 52.4 3.0 24 11-34 37-60 (266)
286 2cbz_A Multidrug resistance-as 96.8 0.00082 2.8E-08 51.0 3.5 24 11-34 31-54 (237)
287 2eyu_A Twitching motility prot 96.8 0.00083 2.8E-08 51.7 3.5 24 10-33 24-47 (261)
288 3fb4_A Adenylate kinase; psych 96.8 0.00082 2.8E-08 49.8 3.4 22 12-33 1-22 (216)
289 1ji0_A ABC transporter; ATP bi 96.8 0.00066 2.3E-08 51.6 2.8 24 11-34 32-55 (240)
290 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00083 2.8E-08 51.3 3.4 24 11-34 29-52 (250)
291 1ly1_A Polynucleotide kinase; 96.8 0.00078 2.7E-08 48.2 3.1 22 12-33 3-24 (181)
292 2zu0_C Probable ATP-dependent 96.8 0.00085 2.9E-08 51.8 3.4 25 10-34 45-69 (267)
293 1vpl_A ABC transporter, ATP-bi 96.8 0.00069 2.4E-08 52.0 2.9 24 11-34 41-64 (256)
294 2if2_A Dephospho-COA kinase; a 96.8 0.00089 3.1E-08 49.1 3.4 22 12-33 2-23 (204)
295 3uie_A Adenylyl-sulfate kinase 96.8 0.00092 3.2E-08 49.1 3.5 25 9-33 23-47 (200)
296 3vaa_A Shikimate kinase, SK; s 96.8 0.001 3.4E-08 48.8 3.6 23 11-33 25-47 (199)
297 4e22_A Cytidylate kinase; P-lo 96.8 0.0011 3.8E-08 50.6 4.0 24 9-32 25-48 (252)
298 2qi9_C Vitamin B12 import ATP- 96.8 0.00078 2.7E-08 51.5 3.1 24 11-34 26-49 (249)
299 2cdn_A Adenylate kinase; phosp 96.8 0.0012 4E-08 48.4 4.0 26 8-33 17-42 (201)
300 4dzz_A Plasmid partitioning pr 96.8 0.024 8.2E-07 41.2 11.1 68 55-129 76-143 (206)
301 3aez_A Pantothenate kinase; tr 96.7 0.00089 3.1E-08 52.9 3.5 26 8-33 87-112 (312)
302 3trf_A Shikimate kinase, SK; a 96.7 0.00099 3.4E-08 48.0 3.5 23 11-33 5-27 (185)
303 3dl0_A Adenylate kinase; phosp 96.7 0.00092 3.1E-08 49.6 3.4 22 12-33 1-22 (216)
304 2ihy_A ABC transporter, ATP-bi 96.7 0.0008 2.7E-08 52.3 3.1 24 11-34 47-70 (279)
305 2jeo_A Uridine-cytidine kinase 96.7 0.00095 3.2E-08 50.7 3.5 24 10-33 24-47 (245)
306 1np6_A Molybdopterin-guanine d 96.7 0.00087 3E-08 48.3 3.1 53 11-69 6-58 (174)
307 1kht_A Adenylate kinase; phosp 96.7 0.001 3.6E-08 48.0 3.5 23 11-33 3-25 (192)
308 2ghi_A Transport protein; mult 96.7 0.001 3.5E-08 51.1 3.5 24 11-34 46-69 (260)
309 2olj_A Amino acid ABC transpor 96.7 0.0011 3.7E-08 51.1 3.6 25 10-34 49-73 (263)
310 2nq2_C Hypothetical ABC transp 96.7 0.0009 3.1E-08 51.2 3.0 24 11-34 31-54 (253)
311 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.7E-08 48.4 3.4 21 13-33 2-22 (205)
312 2yvu_A Probable adenylyl-sulfa 96.7 0.0013 4.4E-08 47.6 3.7 25 9-33 11-35 (186)
313 3ec2_A DNA replication protein 96.7 0.00076 2.6E-08 48.6 2.4 24 11-34 38-61 (180)
314 2f1r_A Molybdopterin-guanine d 96.7 0.00047 1.6E-08 49.6 1.3 52 13-69 4-55 (171)
315 2yz2_A Putative ABC transporte 96.7 0.00094 3.2E-08 51.5 3.0 24 11-34 33-56 (266)
316 2ixe_A Antigen peptide transpo 96.7 0.0011 3.9E-08 51.2 3.5 24 11-34 45-68 (271)
317 1u0l_A Probable GTPase ENGC; p 96.7 0.001 3.5E-08 52.2 3.3 25 11-35 169-193 (301)
318 1t9h_A YLOQ, probable GTPase E 96.7 0.00033 1.1E-08 55.2 0.5 25 11-35 173-197 (307)
319 3lnc_A Guanylate kinase, GMP k 96.7 0.00068 2.3E-08 50.9 2.1 24 11-34 27-51 (231)
320 2qt1_A Nicotinamide riboside k 96.7 0.0014 4.6E-08 48.3 3.7 26 9-34 19-44 (207)
321 2rhm_A Putative kinase; P-loop 96.7 0.0013 4.3E-08 47.7 3.5 23 11-33 5-27 (193)
322 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.6E-08 47.9 3.0 23 11-33 4-26 (186)
323 1qhx_A CPT, protein (chloramph 96.7 0.0014 4.7E-08 46.9 3.7 22 12-33 4-25 (178)
324 2yv5_A YJEQ protein; hydrolase 96.7 0.0013 4.3E-08 51.8 3.7 24 11-35 165-188 (302)
325 2pjz_A Hypothetical protein ST 96.7 0.001 3.5E-08 51.2 3.1 25 11-35 30-54 (263)
326 3tlx_A Adenylate kinase 2; str 96.6 0.001 3.6E-08 50.5 3.1 25 9-33 27-51 (243)
327 1y63_A LMAJ004144AAA protein; 96.6 0.0016 5.5E-08 47.1 3.9 25 10-34 9-33 (184)
328 2ehv_A Hypothetical protein PH 96.6 0.0011 3.7E-08 50.1 3.1 23 10-32 29-51 (251)
329 4a74_A DNA repair and recombin 96.6 0.0011 3.7E-08 49.5 3.0 24 10-33 24-47 (231)
330 1nks_A Adenylate kinase; therm 96.6 0.0012 4.2E-08 47.6 3.3 21 13-33 3-23 (194)
331 2v54_A DTMP kinase, thymidylat 96.6 0.0016 5.6E-08 47.6 3.9 25 10-34 3-27 (204)
332 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.8E-08 48.6 3.4 22 12-33 1-22 (206)
333 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0012 4E-08 53.2 3.1 24 11-34 30-53 (359)
334 2plr_A DTMP kinase, probable t 96.6 0.0014 4.8E-08 48.1 3.4 23 11-33 4-26 (213)
335 1lw7_A Transcriptional regulat 96.6 0.00099 3.4E-08 53.7 2.7 24 11-34 170-193 (365)
336 2c95_A Adenylate kinase 1; tra 96.6 0.0018 6.1E-08 47.0 3.8 24 10-33 8-31 (196)
337 1jjv_A Dephospho-COA kinase; P 96.6 0.0013 4.6E-08 48.3 3.2 22 12-33 3-24 (206)
338 1odf_A YGR205W, hypothetical 3 96.6 0.0016 5.5E-08 50.9 3.7 26 8-33 28-53 (290)
339 1rz3_A Hypothetical protein rb 96.6 0.0014 5E-08 48.1 3.3 25 9-33 20-44 (201)
340 1e4v_A Adenylate kinase; trans 96.6 0.0015 5.1E-08 48.4 3.3 22 12-33 1-22 (214)
341 2wwf_A Thymidilate kinase, put 96.5 0.0017 5.9E-08 47.7 3.6 24 10-33 9-32 (212)
342 3jvv_A Twitching mobility prot 96.5 0.0013 4.4E-08 53.0 3.0 23 11-33 123-145 (356)
343 1zd8_A GTP:AMP phosphotransfer 96.5 0.0017 5.9E-08 48.5 3.6 24 10-33 6-29 (227)
344 3be4_A Adenylate kinase; malar 96.5 0.0017 5.8E-08 48.3 3.5 24 10-33 4-27 (217)
345 2kjq_A DNAA-related protein; s 96.5 0.001 3.5E-08 46.6 2.1 25 10-34 35-59 (149)
346 1nn5_A Similar to deoxythymidy 96.5 0.0019 6.6E-08 47.6 3.8 24 10-33 8-31 (215)
347 3tui_C Methionine import ATP-b 96.5 0.0014 4.8E-08 52.8 3.2 24 11-34 54-77 (366)
348 3nh6_A ATP-binding cassette SU 96.5 0.00099 3.4E-08 52.5 2.2 24 10-33 79-102 (306)
349 3tqc_A Pantothenate kinase; bi 96.5 0.0017 6E-08 51.4 3.6 25 9-33 90-114 (321)
350 1z47_A CYSA, putative ABC-tran 96.5 0.0014 4.9E-08 52.6 3.1 23 12-34 42-64 (355)
351 1sq5_A Pantothenate kinase; P- 96.5 0.0018 6E-08 51.1 3.6 25 9-33 78-102 (308)
352 1xjc_A MOBB protein homolog; s 96.5 0.0021 7E-08 46.1 3.5 22 12-33 5-26 (169)
353 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.9E-08 46.9 3.2 23 11-33 3-25 (196)
354 1zak_A Adenylate kinase; ATP:A 96.5 0.0017 6E-08 48.3 3.3 24 10-33 4-27 (222)
355 2bbs_A Cystic fibrosis transme 96.5 0.0018 6.2E-08 50.6 3.5 25 10-34 63-87 (290)
356 2pt5_A Shikimate kinase, SK; a 96.5 0.0019 6.6E-08 45.6 3.4 22 12-33 1-22 (168)
357 3iij_A Coilin-interacting nucl 96.5 0.0019 6.5E-08 46.4 3.4 23 11-33 11-33 (180)
358 2it1_A 362AA long hypothetical 96.5 0.0016 5.4E-08 52.5 3.2 24 11-34 29-52 (362)
359 3rlf_A Maltose/maltodextrin im 96.5 0.0016 5.4E-08 52.8 3.2 24 11-34 29-52 (381)
360 2yyz_A Sugar ABC transporter, 96.5 0.0016 5.4E-08 52.5 3.1 24 11-34 29-52 (359)
361 2gza_A Type IV secretion syste 96.4 0.0017 5.8E-08 52.3 3.2 25 10-34 174-198 (361)
362 1g29_1 MALK, maltose transport 96.4 0.0017 5.8E-08 52.6 3.1 23 12-34 30-52 (372)
363 1v43_A Sugar-binding transport 96.4 0.0018 6E-08 52.5 3.2 24 11-34 37-60 (372)
364 1via_A Shikimate kinase; struc 96.4 0.0018 6.1E-08 46.3 2.9 21 13-33 6-26 (175)
365 1uf9_A TT1252 protein; P-loop, 96.4 0.0022 7.7E-08 46.7 3.4 27 8-34 5-31 (203)
366 1ak2_A Adenylate kinase isoenz 96.4 0.0026 8.7E-08 47.9 3.8 25 9-33 14-38 (233)
367 1gvn_B Zeta; postsegregational 96.4 0.0022 7.4E-08 50.0 3.4 24 10-33 32-55 (287)
368 1ukz_A Uridylate kinase; trans 96.4 0.0026 8.8E-08 46.6 3.7 24 10-33 14-37 (203)
369 2x8a_A Nuclear valosin-contain 96.4 0.0019 6.4E-08 50.0 3.0 21 13-33 46-66 (274)
370 2pez_A Bifunctional 3'-phospho 96.4 0.0024 8.3E-08 45.8 3.4 24 10-33 4-27 (179)
371 3end_A Light-independent proto 96.4 0.031 1.1E-06 43.6 10.0 67 56-128 158-225 (307)
372 2ewv_A Twitching motility prot 96.4 0.0022 7.6E-08 51.9 3.4 24 10-33 135-158 (372)
373 1ixz_A ATP-dependent metallopr 96.3 0.0021 7E-08 48.9 3.1 21 13-33 51-71 (254)
374 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0016 5.6E-08 51.8 2.6 24 11-34 171-194 (330)
375 2bwj_A Adenylate kinase 5; pho 96.3 0.0027 9.1E-08 46.2 3.5 23 11-33 12-34 (199)
376 2xb4_A Adenylate kinase; ATP-b 96.3 0.0026 9E-08 47.5 3.5 22 12-33 1-22 (223)
377 2z0h_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 46.1 3.4 21 13-33 2-22 (197)
378 2ze6_A Isopentenyl transferase 96.3 0.0023 7.7E-08 48.9 3.1 21 13-33 3-23 (253)
379 2pbr_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 45.9 3.3 21 13-33 2-22 (195)
380 3gd7_A Fusion complex of cysti 96.3 0.0022 7.7E-08 52.2 3.1 23 11-33 47-69 (390)
381 1p9r_A General secretion pathw 96.3 0.0021 7.3E-08 52.8 3.0 24 10-33 166-189 (418)
382 3cwq_A Para family chromosome 96.3 0.15 5.2E-06 37.3 13.0 65 56-130 69-134 (209)
383 3b9q_A Chloroplast SRP recepto 96.3 0.0027 9.4E-08 49.9 3.5 23 11-33 100-122 (302)
384 3d31_A Sulfate/molybdate ABC t 96.3 0.0015 5E-08 52.5 1.9 24 11-34 26-49 (348)
385 1jbk_A CLPB protein; beta barr 96.3 0.0035 1.2E-07 44.8 3.8 25 10-34 42-66 (195)
386 1vht_A Dephospho-COA kinase; s 96.3 0.0029 1E-07 46.9 3.5 23 11-33 4-26 (218)
387 1gtv_A TMK, thymidylate kinase 96.2 0.00095 3.3E-08 49.2 0.7 21 13-33 2-22 (214)
388 2vp4_A Deoxynucleoside kinase; 96.2 0.002 7E-08 48.4 2.5 26 9-34 18-43 (230)
389 1qf9_A UMP/CMP kinase, protein 96.2 0.0033 1.1E-07 45.3 3.6 22 12-33 7-28 (194)
390 3r20_A Cytidylate kinase; stru 96.2 0.0034 1.2E-07 47.4 3.6 25 9-33 7-31 (233)
391 3kta_A Chromosome segregation 96.2 0.0029 9.9E-08 45.4 3.1 21 13-33 28-48 (182)
392 2oap_1 GSPE-2, type II secreti 96.2 0.0026 8.9E-08 53.7 3.2 23 11-33 260-282 (511)
393 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0028 9.6E-08 52.8 3.3 25 10-34 137-161 (460)
394 2iyv_A Shikimate kinase, SK; t 96.2 0.0028 9.5E-08 45.6 2.9 22 12-33 3-24 (184)
395 2p5t_B PEZT; postsegregational 96.2 0.0022 7.4E-08 49.0 2.4 25 9-33 30-54 (253)
396 2vli_A Antibiotic resistance p 96.2 0.0025 8.5E-08 45.7 2.6 23 11-33 5-27 (183)
397 4eaq_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 47.0 3.7 25 9-33 24-48 (229)
398 1iy2_A ATP-dependent metallopr 96.1 0.0031 1.1E-07 48.7 3.1 21 13-33 75-95 (278)
399 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0031 1.1E-07 46.8 3.0 23 11-33 23-45 (235)
400 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0037 1.3E-07 47.9 3.4 23 11-33 4-26 (260)
401 1oxx_K GLCV, glucose, ABC tran 96.1 0.0015 5E-08 52.6 1.2 24 11-34 31-54 (353)
402 1e6c_A Shikimate kinase; phosp 96.1 0.0035 1.2E-07 44.5 3.1 22 12-33 3-24 (173)
403 1in4_A RUVB, holliday junction 96.1 0.0031 1.1E-07 50.2 3.0 23 12-34 52-74 (334)
404 3b9p_A CG5977-PA, isoform A; A 96.1 0.0046 1.6E-07 48.0 3.9 25 9-33 52-76 (297)
405 2obl_A ESCN; ATPase, hydrolase 96.1 0.0036 1.2E-07 50.2 3.3 25 10-34 70-94 (347)
406 1uj2_A Uridine-cytidine kinase 96.1 0.0039 1.4E-07 47.4 3.3 24 10-33 21-44 (252)
407 2og2_A Putative signal recogni 96.0 0.0043 1.5E-07 49.9 3.5 24 10-33 156-179 (359)
408 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.004 1.4E-07 43.6 2.9 20 13-32 25-44 (149)
409 3umf_A Adenylate kinase; rossm 96.0 0.0051 1.7E-07 45.9 3.5 24 10-33 27-51 (217)
410 3nwj_A ATSK2; P loop, shikimat 96.0 0.0042 1.4E-07 47.4 3.2 23 11-33 48-70 (250)
411 1m7g_A Adenylylsulfate kinase; 96.0 0.0049 1.7E-07 45.5 3.5 24 10-33 24-47 (211)
412 2p65_A Hypothetical protein PF 96.0 0.0042 1.4E-07 44.3 2.9 25 10-34 42-66 (187)
413 1nij_A Hypothetical protein YJ 95.9 0.0032 1.1E-07 49.8 2.4 22 13-34 6-27 (318)
414 1cr0_A DNA primase/helicase; R 95.9 0.0042 1.4E-07 48.4 3.0 23 11-33 35-57 (296)
415 2f6r_A COA synthase, bifunctio 95.9 0.0055 1.9E-07 47.5 3.6 24 10-33 74-97 (281)
416 3bos_A Putative DNA replicatio 95.9 0.0058 2E-07 45.5 3.6 24 10-33 51-74 (242)
417 1lv7_A FTSH; alpha/beta domain 95.9 0.0059 2E-07 46.4 3.7 23 11-33 45-67 (257)
418 3gmt_A Adenylate kinase; ssgci 95.9 0.0054 1.8E-07 46.2 3.4 24 10-33 7-30 (230)
419 1a7j_A Phosphoribulokinase; tr 95.9 0.003 1E-07 49.3 2.0 25 9-33 3-27 (290)
420 3lv8_A DTMP kinase, thymidylat 95.9 0.0058 2E-07 46.2 3.6 31 3-33 19-49 (236)
421 1zuh_A Shikimate kinase; alpha 95.9 0.0058 2E-07 43.2 3.3 21 13-33 9-29 (168)
422 2w58_A DNAI, primosome compone 95.9 0.0051 1.7E-07 44.9 3.0 22 12-33 55-76 (202)
423 2dpy_A FLII, flagellum-specifi 95.8 0.0051 1.7E-07 50.9 3.3 25 10-34 156-180 (438)
424 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0052 1.8E-07 52.2 3.4 25 10-34 46-70 (538)
425 2cvh_A DNA repair and recombin 95.8 0.0051 1.7E-07 45.3 3.0 24 10-33 19-42 (220)
426 1n0w_A DNA repair protein RAD5 95.8 0.0052 1.8E-07 46.1 3.1 24 10-33 23-46 (243)
427 3euj_A Chromosome partition pr 95.8 0.0049 1.7E-07 51.5 3.1 22 12-33 30-51 (483)
428 3b60_A Lipid A export ATP-bind 95.8 0.0057 2E-07 52.4 3.5 25 10-34 368-392 (582)
429 3eie_A Vacuolar protein sortin 95.8 0.0072 2.5E-07 47.7 3.9 26 8-33 48-73 (322)
430 2grj_A Dephospho-COA kinase; T 95.8 0.0053 1.8E-07 44.9 2.8 25 10-34 11-35 (192)
431 1svm_A Large T antigen; AAA+ f 95.8 0.0069 2.3E-07 49.1 3.7 25 9-33 167-191 (377)
432 3b5x_A Lipid A export ATP-bind 95.7 0.0067 2.3E-07 52.0 3.7 25 10-34 368-392 (582)
433 1q3t_A Cytidylate kinase; nucl 95.7 0.0081 2.8E-07 45.1 3.7 25 9-33 14-38 (236)
434 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0061 2.1E-07 49.2 3.1 20 13-32 25-44 (365)
435 1tue_A Replication protein E1; 95.7 0.0059 2E-07 45.1 2.7 23 11-33 58-80 (212)
436 3t15_A Ribulose bisphosphate c 95.7 0.0083 2.8E-07 46.8 3.7 24 10-33 35-58 (293)
437 3n70_A Transport activator; si 95.6 0.012 4.2E-07 40.6 4.2 27 9-35 22-48 (145)
438 3ozx_A RNAse L inhibitor; ATP 95.6 0.0057 2E-07 51.9 2.9 25 10-34 24-48 (538)
439 1ltq_A Polynucleotide kinase; 95.6 0.0069 2.4E-07 47.2 3.1 22 12-33 3-24 (301)
440 3syl_A Protein CBBX; photosynt 95.6 0.0093 3.2E-07 46.5 3.9 25 9-33 65-89 (309)
441 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0091 3.1E-07 47.2 3.8 25 9-33 43-67 (322)
442 3h4m_A Proteasome-activating n 95.6 0.0089 3E-07 46.1 3.7 25 9-33 49-73 (285)
443 3j16_B RLI1P; ribosome recycli 95.6 0.0068 2.3E-07 52.2 3.2 25 10-34 102-126 (608)
444 2yl4_A ATP-binding cassette SU 95.6 0.006 2E-07 52.5 2.8 25 10-34 369-393 (595)
445 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.01 3.5E-07 45.0 3.8 24 10-33 38-61 (262)
446 2chg_A Replication factor C sm 95.5 0.0078 2.7E-07 44.0 3.0 21 13-33 40-60 (226)
447 2qmh_A HPR kinase/phosphorylas 95.5 0.0093 3.2E-07 43.8 3.3 25 11-35 34-58 (205)
448 1njg_A DNA polymerase III subu 95.5 0.0077 2.6E-07 44.6 3.0 22 12-33 46-67 (250)
449 3qf4_B Uncharacterized ABC tra 95.5 0.0069 2.3E-07 52.1 2.9 25 10-34 380-404 (598)
450 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0084 2.9E-07 50.9 3.4 26 10-35 311-336 (538)
451 3bk7_A ABC transporter ATP-bin 95.5 0.0078 2.7E-07 51.9 3.1 25 10-34 116-140 (607)
452 1p5z_B DCK, deoxycytidine kina 95.4 0.0053 1.8E-07 47.0 1.8 25 9-33 22-46 (263)
453 3ozx_A RNAse L inhibitor; ATP 95.4 0.0083 2.8E-07 50.9 3.1 24 11-34 294-317 (538)
454 4fcw_A Chaperone protein CLPB; 95.4 0.011 3.8E-07 46.0 3.7 24 11-34 47-70 (311)
455 3cf0_A Transitional endoplasmi 95.4 0.011 3.9E-07 46.1 3.7 25 9-33 47-71 (301)
456 3ake_A Cytidylate kinase; CMP 95.4 0.01 3.6E-07 43.3 3.3 21 13-33 4-24 (208)
457 1nlf_A Regulatory protein REPA 95.4 0.0089 3E-07 46.1 3.0 24 10-33 29-52 (279)
458 3crm_A TRNA delta(2)-isopenten 95.4 0.011 3.7E-07 46.8 3.5 22 12-33 6-27 (323)
459 3a8t_A Adenylate isopentenyltr 95.4 0.012 4E-07 46.9 3.7 23 12-34 41-63 (339)
460 3bk7_A ABC transporter ATP-bin 95.4 0.0098 3.3E-07 51.2 3.4 25 11-35 382-406 (607)
461 3d8b_A Fidgetin-like protein 1 95.4 0.013 4.3E-07 47.1 3.9 26 8-33 114-139 (357)
462 4a82_A Cystic fibrosis transme 95.4 0.0057 2E-07 52.4 2.0 25 10-34 366-390 (578)
463 1l8q_A Chromosomal replication 95.3 0.0092 3.2E-07 47.0 3.0 23 11-33 37-59 (324)
464 1azs_C GS-alpha; complex (lyas 95.3 0.01 3.4E-07 48.5 3.1 24 9-32 38-61 (402)
465 2qp9_X Vacuolar protein sortin 95.3 0.012 4E-07 47.3 3.4 25 9-33 82-106 (355)
466 3qf4_A ABC transporter, ATP-bi 95.2 0.0079 2.7E-07 51.6 2.4 25 10-34 368-392 (587)
467 3exa_A TRNA delta(2)-isopenten 95.2 0.013 4.6E-07 46.1 3.5 23 12-34 4-26 (322)
468 1sxj_E Activator 1 40 kDa subu 95.2 0.011 3.8E-07 47.0 3.1 20 14-33 39-58 (354)
469 4ido_A Atlastin-1; GTPase, GTP 95.2 0.035 1.2E-06 45.9 6.0 23 10-32 66-88 (457)
470 2qby_A CDC6 homolog 1, cell di 95.2 0.011 3.8E-07 47.2 3.1 24 10-33 44-67 (386)
471 3qks_A DNA double-strand break 95.2 0.012 4E-07 43.4 2.9 20 13-32 25-44 (203)
472 2dr3_A UPF0273 protein PH0284; 95.2 0.012 4.2E-07 44.0 3.1 23 11-33 23-45 (247)
473 2ocp_A DGK, deoxyguanosine kin 95.2 0.014 4.7E-07 44.0 3.3 22 12-33 3-24 (241)
474 3j16_B RLI1P; ribosome recycli 95.1 0.013 4.3E-07 50.6 3.4 23 13-35 380-402 (608)
475 3d3q_A TRNA delta(2)-isopenten 95.1 0.012 4.2E-07 46.8 3.1 22 12-33 8-29 (340)
476 1d2n_A N-ethylmaleimide-sensit 95.1 0.014 4.7E-07 44.8 3.2 26 9-34 62-87 (272)
477 3zvl_A Bifunctional polynucleo 95.1 0.016 5.5E-07 47.5 3.8 23 11-33 258-280 (416)
478 4b4t_M 26S protease regulatory 95.1 0.017 5.7E-07 47.7 3.8 25 9-33 213-237 (434)
479 1u0j_A DNA replication protein 95.1 0.016 5.6E-07 44.5 3.5 25 9-33 102-126 (267)
480 1ofh_A ATP-dependent HSL prote 95.0 0.015 5.1E-07 45.2 3.3 24 10-33 49-72 (310)
481 1fnn_A CDC6P, cell division co 95.0 0.013 4.6E-07 46.9 3.1 22 13-34 46-67 (389)
482 1sxj_C Activator 1 40 kDa subu 95.0 0.013 4.5E-07 46.5 3.0 22 13-34 48-69 (340)
483 1pzn_A RAD51, DNA repair and r 95.0 0.014 4.7E-07 46.8 3.0 25 10-34 130-154 (349)
484 4b4t_K 26S protease regulatory 95.0 0.018 6.3E-07 47.3 3.8 25 9-33 204-228 (428)
485 3cr8_A Sulfate adenylyltranfer 95.0 0.009 3.1E-07 50.8 2.0 24 10-33 368-391 (552)
486 3vfd_A Spastin; ATPase, microt 94.9 0.019 6.6E-07 46.5 3.8 25 9-33 146-170 (389)
487 3foz_A TRNA delta(2)-isopenten 94.9 0.019 6.5E-07 45.2 3.6 22 12-33 11-32 (316)
488 2h92_A Cytidylate kinase; ross 94.9 0.016 5.6E-07 42.7 3.1 23 11-33 3-25 (219)
489 2iw3_A Elongation factor 3A; a 94.9 0.016 5.4E-07 52.5 3.5 27 10-36 460-486 (986)
490 3v9p_A DTMP kinase, thymidylat 94.9 0.016 5.3E-07 43.6 2.9 24 10-33 24-47 (227)
491 2qgz_A Helicase loader, putati 94.9 0.02 6.7E-07 45.0 3.6 23 11-33 152-174 (308)
492 4b4t_L 26S protease subunit RP 94.9 0.02 6.8E-07 47.3 3.8 25 9-33 213-237 (437)
493 3uk6_A RUVB-like 2; hexameric 94.8 0.018 6.1E-07 46.0 3.3 23 11-33 70-92 (368)
494 3co5_A Putative two-component 94.8 0.0097 3.3E-07 41.1 1.5 24 10-33 26-49 (143)
495 3pxg_A Negative regulator of g 94.8 0.02 6.8E-07 47.7 3.6 26 9-34 199-224 (468)
496 2zan_A Vacuolar protein sortin 94.8 0.021 7.3E-07 47.2 3.8 26 9-34 165-190 (444)
497 3tqf_A HPR(Ser) kinase; transf 94.8 0.02 6.8E-07 41.1 3.1 24 11-34 16-39 (181)
498 1qhl_A Protein (cell division 94.8 0.0029 9.9E-08 47.6 -1.4 21 14-34 30-50 (227)
499 4f4c_A Multidrug resistance pr 94.8 0.011 3.8E-07 55.5 2.2 25 9-33 1103-1127(1321)
500 1sxj_D Activator 1 41 kDa subu 94.7 0.018 6.2E-07 45.6 3.0 22 13-34 60-81 (353)
No 1
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=100.00 E-value=6.2e-35 Score=221.14 Aligned_cols=201 Identities=37% Similarity=0.648 Sum_probs=154.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecC---ccEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
++.+.+||+++|++|||||||+++|+++.+...+++++.....+.+++ ..+.+|||||++.+...++..+++++|++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999999999888888877777788874 47999999999998875678889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|+++....+.....+|..++........++|+++|+||+|+..........+.+.+.+...+..+.++....+...
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 99999988655566777777776543222334589999999999998888888888898888888888888877766665
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecC------CCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg------~g~~~i~~l~~~i~~ 210 (211)
....+++..++.|.+++++..+.|++|||++| +| ++++++||.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~g---v~~lf~~l~~ 212 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSAD---IQDLEKWLAK 212 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCB---CHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccC---hHHHHHHHHH
Confidence 55567777778888888877899999999999 99 9999999975
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.8e-32 Score=208.12 Aligned_cols=157 Identities=22% Similarity=0.298 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.+++||+++|.+|||||||+++|+.+.|...+ ||++..... +..++. .+.+|||+|+++|+. ++..|++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-l~~~~~~~a~~ 88 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-LIPSYIRDSAA 88 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG-GHHHHHTTCSE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-HHHHHhccccE
Confidence 346789999999999999999999999997776 777765443 455555 788999999999999 79999999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|.+++.+ +..+..|+..+.... ..++|++||+||+|+.+.+.+. +....+.+.++
T Consensus 89 ~ilv~di~~~~S-f~~i~~~~~~i~~~~---~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~--------------- 149 (216)
T 4dkx_A 89 AVVVYDITNVNS-FQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN--------------- 149 (216)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEeecchhHH-HHHHHHHHHHHHHhc---CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---------------
Confidence 999999999665 999999988876532 2459999999999998765532 22333443333
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.|++|||++|+| |+++|++|.+
T Consensus 150 -----------------------~~~~e~SAktg~n---V~e~F~~i~~ 172 (216)
T 4dkx_A 150 -----------------------VMFIETSAKAGYN---VKQLFRRVAA 172 (216)
T ss_dssp -----------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeeEEEeCCCCcC---HHHHHHHHHH
Confidence 6899999999999 9999999864
No 3
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.6e-31 Score=197.57 Aligned_cols=161 Identities=21% Similarity=0.355 Sum_probs=129.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|++|||||||+++|.++.+....||.+.....+.+++..+.+|||||++.++. .+..+++++|++++|+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP-YWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHH-HHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHH-HHHHHhCCCCEEEEEEE
Confidence 57899999999999999999999988776666888888778888888999999999999988 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. ...
T Consensus 93 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~-~~~----------------- 147 (181)
T 1fzq_A 93 SADRKR-FEETGQELTELLEEEKLSC--VPVLIFANKQDLLTAAPASEIAEG----LNL-HTI----------------- 147 (181)
T ss_dssp TTCGGG-HHHHHHHHHHHTTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHH----TTG-GGC-----------------
T ss_pred CcCHHH-HHHHHHHHHHHHhChhhcC--CCEEEEEECcCcccCCCHHHHHHH----hCc-hhc-----------------
Confidence 999665 8888888888876533333 999999999999876654332222 110 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 148 ------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (181)
T 1fzq_A 148 ------------RDRVWQIQSCSALTGEG---VQDGMNWVCK 174 (181)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCCCC---HHHHHHHHHH
Confidence 01237899999999999 9999999975
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=3.5e-31 Score=193.17 Aligned_cols=162 Identities=22% Similarity=0.365 Sum_probs=131.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|.++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP-YWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGG-GGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhH-HHHHHhccCCEEEEEE
Confidence 356799999999999999999999998887777888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+.+.. . ..
T Consensus 83 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~--~---~~---------------- 138 (171)
T 1upt_A 83 DSCDRDR-IGISKSELVAMLEEEELRK--AILVVFANKQDMEQAMTSSEMANSLGL--P---AL---------------- 138 (171)
T ss_dssp ETTCCTT-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTG--G---GC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHHhchhhCC--CEEEEEEECCCCcCCCCHHHHHHHhCc--h---hc----------------
Confidence 9999765 8888888888876543334 999999999999877654443332210 0 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 139 -------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (171)
T 1upt_A 139 -------------KDRKWQIFKTSATKGTG---LDEAMEWLVE 165 (171)
T ss_dssp -------------TTSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------cCCceEEEECcCCCCcC---HHHHHHHHHH
Confidence 01236899999999999 9999999875
No 5
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=3.1e-31 Score=192.29 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
+||+++|++|||||||+++++++.+....||++.....+.+++..+.+|||||++.++. ++..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHH-HHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHH-HHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988887777888877777888878999999999999988 78889999999999999999
Q ss_pred chhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCC
Q psy4433 92 VQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGN 171 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (211)
+.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. .. +
T Consensus 80 ~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~----~~~-~~------------------~-- 131 (164)
T 1r8s_A 80 RER-VNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMNAAEITDK----LGL-HS------------------L-- 131 (164)
T ss_dssp GGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHH----TTG-GG------------------C--
T ss_pred HHH-HHHHHHHHHHHHhchhhcC--CeEEEEEECcCCcCCCCHHHHHHH----hCc-cc------------------c--
Confidence 765 8888888888876543334 999999999999766543332221 110 00 0
Q ss_pred CCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 172 PDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| +++++++|.+
T Consensus 132 ---------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 158 (164)
T 1r8s_A 132 ---------RHRNWYIQATCATSGDG---LYEGLDWLSN 158 (164)
T ss_dssp ---------SSCCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------cCccEEEEEcccCCCcC---HHHHHHHHHH
Confidence 01236899999999999 9999999864
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.9e-31 Score=195.64 Aligned_cols=162 Identities=20% Similarity=0.372 Sum_probs=127.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|+++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-SWNTYYTNTEFVIVVV 91 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CG-GGHHHHTTCCEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEE
Confidence 467899999999999999999999988887666888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....|+..++......+ +|+++|+||+|+.+.....++.+.+.. . .. .
T Consensus 92 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~~--~---~~-----~---------- 148 (187)
T 1zj6_A 92 DSTDRER-ISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECMTVAEISQFLKL--T---SI-----K---------- 148 (187)
T ss_dssp ETTCTTT-HHHHHHHHHHHHTSGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTG--G---GC-----C----------
T ss_pred eCCCHHH-HHHHHHHHHHHHhchhhCC--CeEEEEEECCCCcCCCCHHHHHHHhCh--h---hh-----c----------
Confidence 9999665 8888888888876532233 999999999999875554443332210 0 00 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| ++++++||.+
T Consensus 149 --------------~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 174 (187)
T 1zj6_A 149 --------------DHQWHIQACCALTGEG---LCQGLEWMMS 174 (187)
T ss_dssp --------------SSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred --------------CCCcEEEEccCCCCcC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.5e-31 Score=196.97 Aligned_cols=162 Identities=22% Similarity=0.384 Sum_probs=125.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.++.+||+++|++|||||||+++|+++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CT-THHHHHHTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEE
Confidence 457899999999999999999999998887777888887777888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+. +.. ...
T Consensus 105 D~~~~~s-~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~----~~~-~~~---------------- 160 (192)
T 2b6h_A 105 DSNDRER-VQESADELQKMLQEDELRD--AVLLVFANKQDMPNAMPVSELTDK----LGL-QHL---------------- 160 (192)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHH----TTG-GGC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHhcccccCC--CeEEEEEECCCCCCCCCHHHHHHH----hCc-ccc----------------
Confidence 9999765 8888888888876543334 999999999999776544332222 110 000
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 161 -------------~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 187 (192)
T 2b6h_A 161 -------------RSRTWYVQATCATQGTG---LYDGLDWLSH 187 (192)
T ss_dssp -------------SSCCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------cCCceEEEECcCCCcCC---HHHHHHHHHH
Confidence 01237889999999999 9999999864
No 8
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=4.7e-31 Score=197.85 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=123.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|++|||||||+++|.++.+....||.+.....+.+++..+.+|||||++.++. ++..+++++|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARR-VWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CC-GGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHH-HHHHHHhcCCEEEEEE
Confidence 356789999999999999999999998876666888888888889888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....|+..++......+ +|+++|+||+|+.+....++..+. +.... ..++....
T Consensus 101 D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~~~--~~~~~~~~-------- 163 (198)
T 1f6b_A 101 DCADHER-LLESKEELDSLMTDETIAN--VPILILGNKIDRPEAISEERLREM----FGLYG--QTTGKGSV-------- 163 (198)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--SCEEEEEECTTSTTCCCHHHHHHH----HTCTT--TCCCSSCC--------
T ss_pred ECCCHHH-HHHHHHHHHHHHhCcccCC--CcEEEEEECCCccccCCHHHHHHH----hCccc--cccccccc--------
Confidence 9999665 8888889888876533333 999999999999865444433322 22110 00000000
Q ss_pred ccCCCCCCeeecC-CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSD-LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+ ....+++++|||++|+| ++++++||.+
T Consensus 164 ---------~~~~~~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 195 (198)
T 1f6b_A 164 ---------SLKELNARPLEVFMCSVLKRQG---YGEGFRWMAQ 195 (198)
T ss_dssp ---------CTTTCCSCCEEEEECBTTTTBS---HHHHHHHHHT
T ss_pred ---------ccccccCceEEEEEEECCCCCC---HHHHHHHHHH
Confidence 0000 02347899999999999 9999999975
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.1e-30 Score=194.46 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=128.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|++|||||||++++.++.+....||.+.....+.+++..+.+|||||++.++. .+..+++++|++++|+
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR-LWKDYFPEVNGIVFLV 98 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTT-SGGGGCTTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHH-HHHHHHhcCCEEEEEE
Confidence 356789999999999999999999998887666888888888899988999999999999988 6888899999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.+....++..+ .+.... ... .
T Consensus 99 d~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~----~~~~~~---~~~---------~-- 157 (190)
T 1m2o_B 99 DAADPER-FDEARVELDALFNIAELKD--VPFVILGNKIDAPNAVSEAELRS----ALGLLN---TTG---------S-- 157 (190)
T ss_dssp ETTCGGG-HHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCCCHHHHHH----HTTCSS---CCC------------
T ss_pred ECCChHH-HHHHHHHHHHHHcchhhcC--CCEEEEEECCCCcCCCCHHHHHH----HhCCcc---ccc---------c--
Confidence 9999665 8888888888876533333 99999999999987444433222 221100 000 0
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ . + .-...+++++|||++|+| ++++++||.+
T Consensus 158 -----~-~--~-~~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 188 (190)
T 1m2o_B 158 -----Q-R--I-EGQRPVEVFMCSVVMRNG---YLEAFQWLSQ 188 (190)
T ss_dssp ----------C-CSSCCEEEEECBTTTTBS---HHHHHHHHHT
T ss_pred -----c-c--c-cccceEEEEEeECCcCCC---HHHHHHHHHh
Confidence 0 0 0 012347899999999999 9999999975
No 10
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.2e-30 Score=193.29 Aligned_cols=161 Identities=21% Similarity=0.360 Sum_probs=128.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|++|||||||+++++++......||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS-YWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT-TGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhcCCCEEEEEEE
Confidence 57899999999999999999999988855555888888888888888999999999999988 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....+..+.+ .. ...
T Consensus 95 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~----~~-~~~----------------- 149 (186)
T 1ksh_A 95 SADRQR-MQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGALSCNAIQEAL----EL-DSI----------------- 149 (186)
T ss_dssp TTCGGG-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHT----TG-GGC-----------------
T ss_pred CcCHHH-HHHHHHHHHHHHhChhcCC--CcEEEEEeCccCCCCCCHHHHHHHh----Ch-hhc-----------------
Confidence 999765 8888888888876533334 9999999999998765543332221 10 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| +++++++|.+
T Consensus 150 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 176 (186)
T 1ksh_A 150 ------------RSHHWRIQGCSAVTGED---LLPGIDWLLD 176 (186)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEeeCCCCCC---HHHHHHHHHH
Confidence 01237899999999999 9999999875
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.2e-30 Score=192.48 Aligned_cols=162 Identities=22% Similarity=0.375 Sum_probs=128.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.++.+||+++|++|||||||+++|+++.+.. ..||++.....+..++..+.+|||||++.+.. .+..+++++|++++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS-MWERYCRGVSAIVYM 97 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHT-THHHHHTTCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHH-HHHHHHccCCEEEEE
Confidence 3457899999999999999999999988764 34788888777777777999999999999988 688899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy4433 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....++..++......+ +|+++|+||+|+.......++.+. +... ..
T Consensus 98 ~D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~----~~~~-~~--------------- 154 (188)
T 1zd9_A 98 VDAADQEK-IEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGALDEKELIEK----MNLS-AI--------------- 154 (188)
T ss_dssp EETTCGGG-HHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCCCHHHHHHH----TTGG-GC---------------
T ss_pred EECCCHHH-HHHHHHHHHHHHhCcccCC--CCEEEEEECCCCccCCCHHHHHHH----hChh-hh---------------
Confidence 99998655 8888888888876533333 999999999999876543322221 1100 00
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| ++++++||.+
T Consensus 155 --------------~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 181 (188)
T 1zd9_A 155 --------------QDREICCYSISCKEKDN---IDITLQWLIQ 181 (188)
T ss_dssp --------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------ccCCeeEEEEECCCCCC---HHHHHHHHHH
Confidence 01237889999999999 9999999975
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-31 Score=197.61 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=130.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++++||+++|++|||||||++++..+.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRP-YWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCC-CCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHH-HHHHHhhcCCEEEEEEe
Confidence 57899999999999999999999988887777888888888888888999999999998887 67888899999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++.+.+.. . ..
T Consensus 99 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~--~---~~----------------- 153 (189)
T 2x77_A 99 STDRDR-MGVAKHELYALLDEDELRK--SLLLIFANKQDLPDAASEAEIAEQLGV--S---SI----------------- 153 (189)
T ss_dssp TTCCTT-HHHHHHHHHHHHTCSTTTT--CEEEEEEECTTSTTCCCHHHHHHHTTG--G---GC-----------------
T ss_pred CCCHHH-HHHHHHHHHHHHhhhhcCC--CeEEEEEECCCCcCCCCHHHHHHHhCh--h---hc-----------------
Confidence 999765 8888888888876543333 999999999999876554333222110 0 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 154 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 180 (189)
T 2x77_A 154 ------------MNRTWTIVKSSSKTGDG---LVEGMDWLVE 180 (189)
T ss_dssp ------------CSSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCccC---HHHHHHHHHH
Confidence 01236899999999999 9999999875
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1e-30 Score=193.06 Aligned_cols=162 Identities=21% Similarity=0.379 Sum_probs=128.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
..+.+||+++|.+|||||||+++|+++.+....+|.+.....+.+++..+.+|||||++.+.. .+..+++++|++++|+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-SWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTC-GGGGGGTTCCEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEE
Confidence 346789999999999999999999999886666888888888888888999999999999988 6888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQT 167 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (211)
|++++.+ +.....++..++......+ +|+++|+||+|+.......++.+.+. +. ..
T Consensus 97 D~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~i~~~~~--~~---~~---------------- 152 (181)
T 2h17_A 97 DSTDRER-ISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECMTVAEISQFLK--LT---SI---------------- 152 (181)
T ss_dssp ETTCTTT-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHTT--GG---GC----------------
T ss_pred ECCCHHH-HHHHHHHHHHHHhChhhCC--CeEEEEEECCCcccCCCHHHHHHHhC--cc---cc----------------
Confidence 9998655 8888888888876532333 99999999999987654443332211 00 00
Q ss_pred ccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 168 FLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| ++++++||.+
T Consensus 153 -------------~~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 179 (181)
T 2h17_A 153 -------------KDHQWHIQACCALTGEG---LCQGLEWMMS 179 (181)
T ss_dssp -------------CSSCEEEEECBTTTTBT---HHHHHHHHHT
T ss_pred -------------cCCceEEEEccCCCCcC---HHHHHHHHHh
Confidence 01237899999999999 9999999975
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.6e-30 Score=193.21 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=128.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.....||+++|.+|||||||+++|+++.+... .+|++.....+...+..+.+|||||++.+.. ++..+++++|++|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRG-LWETYYDNIDAVIF 92 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGCTTCSEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHH-HHHHHHhcCCEEEE
Confidence 34678999999999999999999999988763 5888888777877777999999999999988 68889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcC-----CCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQ-----SSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|+|++++.+ +.....|+..++...... ..++|+++|+||+|+.......++.+.+.... ...
T Consensus 93 v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~-------- 159 (199)
T 4bas_A 93 VVDSSDHLR-LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT----LMG-------- 159 (199)
T ss_dssp EEETTCGGG-HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH----HHT--------
T ss_pred EEECCcHHH-HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh----hcc--------
Confidence 999999665 888888988887652221 01489999999999987766555444332100 000
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 160 ---------------------~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 185 (199)
T 4bas_A 160 ---------------------DHPFVIFASNGLKGTG---VHEGFSWLQE 185 (199)
T ss_dssp ---------------------TSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------------------CCeeEEEEeeCCCccC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=191.08 Aligned_cols=163 Identities=26% Similarity=0.419 Sum_probs=127.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-cc-ccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YF-ESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
.+.+||+++|.+|||||||+++|+++. +. ...+|++.....+.+++..+.+|||||++.+.. .+..+++++|++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN-LWEHYYKEGQAIIFV 97 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGG-GGGGGGGGCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHH-HHHHHHhcCCEEEEE
Confidence 467899999999999999999999887 33 344788888788888888999999999999988 688889999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy4433 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....++..++........++|+++|+||+|+.+.....+..+.+. +. .. .
T Consensus 98 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~---~~-----~--------- 157 (190)
T 2h57_A 98 IDSSDRLR-MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC--LE---NI-----K--------- 157 (190)
T ss_dssp EETTCHHH-HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT--GG---GC-----C---------
T ss_pred EECCCHHH-HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC--hh---hc-----c---------
Confidence 99998654 88888888888765433113499999999999987655444333221 00 00 0
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| ++++++||.+
T Consensus 158 ---------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 183 (190)
T 2h57_A 158 ---------------DKPWHICASDAIKGEG---LQEGVDWLQD 183 (190)
T ss_dssp ---------------SSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred ---------------CCceEEEEccCCCCcC---HHHHHHHHHH
Confidence 1237899999999999 9999999875
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-30 Score=191.84 Aligned_cols=161 Identities=24% Similarity=0.430 Sum_probs=125.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|++|||||||++++.++.+....||++.....+.+++..+.+|||||++.+.. .+..+++++|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-YWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCT-TGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEE
Confidence 57899999999999999999999988886666888888888888888999999999999887 68888999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++...... ++|+++|+||+|+.+.....++.+.+ .. ...
T Consensus 95 ~~~~~s-~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~i~~~~----~~---------~~~--------- 149 (183)
T 1moz_A 95 STDKDR-MSTASKELHLMLQEEELQ--DAALLVFANKQDQPGALSASEVSKEL----NL---------VEL--------- 149 (183)
T ss_dssp TTCTTT-HHHHHHHHHHHTTSSTTS--SCEEEEEEECTTSTTCCCHHHHHHHT----TT---------TTC---------
T ss_pred CCCHHH-HHHHHHHHHHHHcChhhC--CCeEEEEEECCCCCCCCCHHHHHHHh----Cc---------ccc---------
Confidence 998655 888888888887653233 49999999999998765444332221 10 000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++|||++|+| ++++++||.+
T Consensus 150 ------------~~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 176 (183)
T 1moz_A 150 ------------KDRSWSIVASSAIKGEG---ITEGLDWLID 176 (183)
T ss_dssp ------------CSSCEEEEEEBGGGTBT---HHHHHHHHHH
T ss_pred ------------cCCceEEEEccCCCCcC---HHHHHHHHHH
Confidence 01237899999999999 9999999875
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=2e-29 Score=183.08 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=100.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEEEE
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVL 87 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~ 87 (211)
.+||+++|++|||||||+++|.+.......++.+.... .+.+++. .+.+|||||++.+.. ++..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW-LPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchh-hhhhhhhhCCEEEEEE
Confidence 58999999999999999999998776555555544433 3555555 788999999999988 7888999999999999
Q ss_pred eCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcccc
Q psy4433 88 DSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.... ....+....
T Consensus 81 d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------------- 136 (166)
T 3q72_A 81 SVTDKGS-FEKASELRVQLRRARQT--DDVPIILVGNKSDLVRSREVSVDEGRACAVVF--------------------- 136 (166)
T ss_dssp ETTCHHH-HHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT---------------------
T ss_pred ECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEeccccccccccCHHHHHHHHHHh---------------------
Confidence 9999665 88888888888765333 3499999999999986654322 222222211
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| +++++++|.+
T Consensus 137 -----------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 160 (166)
T 3q72_A 137 -----------------DCKFIETSAALHHN---VQALFEGVVR 160 (166)
T ss_dssp -----------------TCEEEECBGGGTBS---HHHHHHHHHH
T ss_pred -----------------CCcEEEeccCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999875
No 18
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=3.2e-29 Score=185.54 Aligned_cols=157 Identities=16% Similarity=0.262 Sum_probs=118.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+++||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-THHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-HHHHHHhcCCEEE
Confidence 45789999999999999999999998876655 344333 233566665 578899999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+...
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 139 (189)
T 4dsu_A 81 CVFAINNTKS-FEDIHHYREQIKRVKDS--EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG------------------ 139 (189)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHTTC--SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT------------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECccCcccccCHHHHHHHHHHcC------------------
Confidence 9999999654 77777777777653222 34999999999999865544444444443332
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 140 --------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 162 (189)
T 4dsu_A 140 --------------------IPFIETSAKTRQG---VDDAFYTLVR 162 (189)
T ss_dssp --------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=182.63 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=110.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccccccee--eEEEEecCc--cEEEEECCCchh--hhhhhHHHhhhcCCE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR--LRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~--~~~~~~~~~~~~~d~ 82 (211)
.+.+||+++|++|||||||+++|++..+...+++.+.. ...+.+++. .+.+|||||++. +.. +...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW-SQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CH-HHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhh-hHHhhcccCCE
Confidence 45689999999999999999999998876666665544 344667665 788999999987 444 56778889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.... ....+....+
T Consensus 81 ~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--------------- 142 (175)
T 2nzj_A 81 YVIVYSIADRGS-FESASELRIQLRRTHQA--DHVPIILVGNKADLARCREVSVEEGRACAVVFD--------------- 142 (175)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhhcc--CCCCEEEEEEChhhccccccCHHHHHHHHHHcC---------------
Confidence 999999998665 77888777776654222 2499999999999986554321 1112221111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 143 -----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 165 (175)
T 2nzj_A 143 -----------------------CKFIETSATLQHN---VAELFEGVVR 165 (175)
T ss_dssp -----------------------SEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.3e-29 Score=182.63 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||+++|.++.+...+ +|++..... +.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-HHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-HHHHHhccCCEEEE
Confidence 4589999999999999999999998876555 555544432 455544 789999999999888 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.. .+....+.+.+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------------- 138 (167)
T 1c1y_A 81 VYSITAQST-FNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQW------------------- 138 (167)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHHCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------------
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhhCc--CCCcEEEEEECccccccccCCHHHHHHHHHHc-------------------
Confidence 999998654 77777777666543222 34999999999999765442 11122222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| ++++++||.+
T Consensus 139 ------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (167)
T 1c1y_A 139 ------------------CNCAFLESSAKSKIN---VNEIFYDLVR 163 (167)
T ss_dssp ------------------TSCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------cCCcEEEecCCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999999864
No 21
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=6.5e-29 Score=180.19 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=116.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|.++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH-HHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH-HHHHHhhcCCEEEE
Confidence 5689999999999999999999998876555 45544433 3566665 789999999999888 78889999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 140 (168)
T 1u8z_A 82 VFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN------------------ 140 (168)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHHCC--TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECccccccCccCHHHHHHHHHHcC------------------
Confidence 999998665 77777777777653222 249999999999997654422 11112221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (168)
T 1u8z_A 141 --------------------VNYVETSAKTRAN---VDKVFFDLMR 163 (168)
T ss_dssp --------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------CeEEEeCCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
No 22
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=2.5e-29 Score=184.51 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=118.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecC---ccEEEEECCCchhhhhhhHHHhhhcCC
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEK---KNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
..+.+||+++|++|||||||+++|.++.+...+ ||++ .....+.+++ ..+.+|||||++.+.. .+..+++++|
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d 81 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-MLDKYIYGAQ 81 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-THHHHHTTCS
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-hhhHHHhhCC
Confidence 456799999999999999999999998876544 6665 3445577776 3899999999999988 6888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccc
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
++++|+|++++.+ +.....|+..+....... .+.| +++|+||+|+.+.+.. .+....+.+..+
T Consensus 82 ~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------- 146 (178)
T 2hxs_A 82 GVLLVYDITNYQS-FENLEDWYTVVKKVSEES-ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG------------- 146 (178)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhccc-CCCCeEEEEEEccccccccccCHHHHHHHHHHcC-------------
Confidence 9999999999665 666666666554321000 1145 8999999999765432 222222222222
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 147 -------------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 169 (178)
T 2hxs_A 147 -------------------------FSSHFVSAKTGDS---VFLCFQKVAA 169 (178)
T ss_dssp -------------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred -------------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=5.9e-29 Score=182.76 Aligned_cols=158 Identities=15% Similarity=0.248 Sum_probs=121.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|.++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-MREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-CHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHHhhCCEE
Confidence 456789999999999999999999998876655 55555443 3566664 788999999999888 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..++..... .++|+++|+||+|+...+... +....+....
T Consensus 85 i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 144 (181)
T 2fn4_A 85 LLVFAINDRQS-FNEVGKLFTQILRVKDR--DDFPVVLVGNKADLESQRQVPRSEASAFGASH----------------- 144 (181)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHTS--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHc-----------------
Confidence 99999999654 77788887777543222 348999999999998654432 2222222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| ++++++||.+
T Consensus 145 ---------------------~~~~~~~Sa~~~~g---v~~l~~~l~~ 168 (181)
T 2fn4_A 145 ---------------------HVAYFEASAKLRLN---VDEAFEQLVR 168 (181)
T ss_dssp ---------------------TCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 26889999999999 9999999864
No 24
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=201.91 Aligned_cols=161 Identities=21% Similarity=0.375 Sum_probs=128.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
++.+||+++|.+|||||||+++|.++.+....||++.....+..++..+.+|||||++.+.. ++..+++.+|++|+|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CC-SHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHH-HHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999988888999988888888888999999999999998 78889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++...+....
T Consensus 242 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~piilV~NK~Dl~~~~~~~~i~~~~~~~~----------------------- 295 (329)
T 3o47_A 242 SNDRER-VNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMNAAEITDKLGLHS----------------------- 295 (329)
T ss_dssp TTCSSS-HHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCCHHHHHHHHTCTT-----------------------
T ss_pred CCchHH-HHHHHHHHHHHHhhhccCC--CeEEEEEECccCCcccCHHHHHHHhchhh-----------------------
Confidence 998665 8888888888887644334 99999999999987766544333221000
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|||++|+| +++++++|.+
T Consensus 296 -----------~~~~~~~~~~vSAk~g~g---i~el~~~l~~ 323 (329)
T 3o47_A 296 -----------LRHRNWYIQATCATSGDG---LYEGLDWLSN 323 (329)
T ss_dssp -----------CCSSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -----------hhcCCCEEEEEECCCCcC---HHHHHHHHHH
Confidence 002347899999999999 9999999875
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=1.5e-28 Score=181.38 Aligned_cols=158 Identities=13% Similarity=0.230 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-MREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-SHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-HHHHHHhcCCEE
Confidence 345789999999999999999999988876555 5555443 33556665 567799999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 94 i~v~d~~~~~s-~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 154 (183)
T 3kkq_A 94 LIVYSVTDKAS-FEHVDRFHQLILRVKDR--ESFPMILVANKVDLMHLRKVTRDQGKEMATKYN---------------- 154 (183)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHHTS--SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEECCCchhccCcCHHHHHHHHHHhC----------------
Confidence 99999999655 77777777776543222 348999999999997644432 22222332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeee-cCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGL-DSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||+ +|+| +++++++|.+
T Consensus 155 ----------------------~~~~~~Sa~~~~~~---v~~l~~~l~~ 178 (183)
T 3kkq_A 155 ----------------------IPYIETSAKDPPLN---VDKTFHDLVR 178 (183)
T ss_dssp ----------------------CCEEEEBCSSSCBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEeccCCCCCC---HHHHHHHHHH
Confidence 678999999 9999 9999999875
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2e-28 Score=178.11 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=118.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||+++|.++.+...+ |+.+... ..+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-LAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh-hhhhhhccCcEEE
Confidence 3579999999999999999999998876544 6665443 44566654 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC---CCH-HHHHHHHHHHHHHHhhhcccccccch
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA---KSS-SVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+... +.. .+....+.+...
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-------------- 142 (170)
T 1ek0_A 81 VVYDVTKPQS-FIKARHWVKELHEQA---SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-------------- 142 (170)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--------------
T ss_pred EEEecCChHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--------------
Confidence 9999999655 777777777766432 234999999999999765 222 122222222111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 143 ------------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (170)
T 1ek0_A 143 ------------------------LLFFETSAKTGEN---VNDVFLGIGE 165 (170)
T ss_dssp ------------------------CEEEECCTTTCTT---HHHHHHHHHT
T ss_pred ------------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999975
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=6.4e-29 Score=180.06 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee-eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN-VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~-~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+++||+++|++|||||||++++.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-MRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH-HHHHHhccCCEEEE
Confidence 4589999999999999999999998876555 444433 334566665 589999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....++..+...... .++|+++|+||+|+...+... +....+.+..+
T Consensus 81 v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 139 (167)
T 1kao_A 81 VYSLVNQQS-FQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVSSSEGRALAEEWG------------------ 139 (167)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECCcccccccCCHHHHHHHHHHhC------------------
Confidence 999998654 77777777777653222 249999999999997654432 22222222221
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 140 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 162 (167)
T 1kao_A 140 --------------------CPFMETSAKSKTM---VDELFAEIVR 162 (167)
T ss_dssp --------------------SCEEEECTTCHHH---HHHHHHHHHH
T ss_pred --------------------CCEEEecCCCCcC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 28
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=2.3e-28 Score=181.11 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=115.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+.+||+++|++|||||||+++++++.+...+ ||.+.....+.+++. .+.+|||+|++.+. +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH------HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh------eecCCCEEE
Confidence 456799999999999999999999999886655 454434445777775 67789999998766 556799999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC--CCCH-HHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL--AKSS-SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|||++++.+ +..+..|+..+.......+ +|+++|+||+|+.. .+.. .+....+.+.+.
T Consensus 91 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------------- 152 (184)
T 3ihw_A 91 FVFSLEDEIS-FQTVYNYFLRLCSFRNASE--VPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------------- 152 (184)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHTTSCGGG--SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT---------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccccCHHHHHHHHHHcC---------------
Confidence 9999999665 8888888888776432233 89999999999952 2221 111222222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 153 ----------------------~~~~~e~Sa~~~~g---v~~lf~~l~~ 176 (184)
T 3ihw_A 153 ----------------------RCTYYETCATYGLN---VERVFQDVAQ 176 (184)
T ss_dssp ----------------------TCEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred ----------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999865
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.7e-28 Score=178.48 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=119.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
+.+.+||+++|++|||||||+++|+++.+...+ ++.+... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~d~ 81 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-LAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GHHHHHTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh-hhHHhccCCCE
Confidence 345789999999999999999999998876544 5555443 34555543 899999999999988 68889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... .+++|+++|+||+|+.+.+... +....+.+.
T Consensus 82 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 140 (170)
T 1r2q_A 82 AIVVYDITNEES-FARAKNWVKELQRQA---SPNIVIALSGNKADLANKRAVDFQEAQSYADD----------------- 140 (170)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------
Confidence 999999998654 777777777766432 2349999999999997654321 111111111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++++||++|+| +++++++|.+
T Consensus 141 ---------------------~~~~~~~~Sa~~g~g---i~~l~~~i~~ 165 (170)
T 1r2q_A 141 ---------------------NSLLFMETSAKTSMN---VNEIFMAIAK 165 (170)
T ss_dssp ---------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999975
No 30
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=182.91 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=120.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.++|+++|++|||||||+++|.++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH-HHHHHHhhCCEE
Confidence 345689999999999999999999998876655 4554433 34666665 789999999999988 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+... +....+.+..+
T Consensus 90 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 150 (206)
T 2bov_A 90 LCVFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------------- 150 (206)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHTTC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEeccCccccccccHHHHHHHHHHhC----------------
Confidence 99999999665 77777777777653222 249999999999997654421 11112222121
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 151 ----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 173 (206)
T 2bov_A 151 ----------------------VNYVETSAKTRAN---VDKVFFDLMR 173 (206)
T ss_dssp ----------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=184.28 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=114.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 106 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT-ITQSYYRSANGAI 106 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHH-HHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHHhhCCEEE
Confidence 3589999999999999999999998875544 565543 445677764 899999999999988 7889999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..+
T Consensus 107 lv~D~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~----------------- 165 (201)
T 2hup_A 107 LAYDITKRSS-FLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD----------------- 165 (201)
T ss_dssp EEEETTBHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHHHcC-----------------
Confidence 9999998665 777777777765432 2349999999999998644321 11122221111
Q ss_pred ccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .+++|||++|+| ++++++||.+
T Consensus 166 ---------------------~~~~~~~SA~~g~g---i~~l~~~l~~ 189 (201)
T 2hup_A 166 ---------------------ILCAIETSAKDSSN---VEEAFLRVAT 189 (201)
T ss_dssp ---------------------CSEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 4 789999999999 9999999864
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=2.9e-28 Score=177.33 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=118.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|.++.+...+ ++.+... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA-LAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc-ccHhhCcCCCEE
Confidence 45689999999999999999999998875543 5555443 34555554 889999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+... ..+.+|+++|+||+|+.+.+.. .+....+.+..
T Consensus 83 i~v~d~~~~~s-~~~~~~~~~~l~~~---~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 141 (170)
T 1z0j_A 83 IIVYDITKEET-FSTLKNWVRELRQH---GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----------------- 141 (170)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHH---SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---CCCCCcEEEEEECCccccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 67777776666542 1234899999999999865443 22222222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++||++|+| +++++++|.+
T Consensus 142 ---------------------~~~~~~~Sa~~~~~---i~~l~~~i~~ 165 (170)
T 1z0j_A 142 ---------------------HAIFVETSAKNAIN---INELFIEISR 165 (170)
T ss_dssp ---------------------TCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCcC---HHHHHHHHHH
Confidence 16889999999999 9999999865
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.7e-28 Score=181.48 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=118.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+.+||+++|++|||||||+++|++..+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ii 92 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-LTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-SHHHHHTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHHHhccCCEEE
Confidence 4589999999999999999999998875444 555544 344566554 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+..
T Consensus 93 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------------------- 150 (195)
T 1x3s_A 93 LVYDVTRRDT-FVKLDNWLNELETYCTR--NDIVNMLVGNKIDKENREVDRNEGLKFARKH------------------- 150 (195)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHTTCCSC--SCCEEEEEEECTTSSSCCSCHHHHHHHHHHT-------------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhcCc--CCCcEEEEEECCcCcccccCHHHHHHHHHHc-------------------
Confidence 9999998654 77777777777654222 3499999999999964332222222222111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 151 -------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (195)
T 1x3s_A 151 -------------------SMLFIEASAKTCDG---VQCAFEELVE 174 (195)
T ss_dssp -------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------CCEEEEecCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999865
No 34
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=2.8e-28 Score=179.12 Aligned_cols=155 Identities=11% Similarity=0.131 Sum_probs=111.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+.+||+++|++|||||||+++|+++.+....||++..+. .+.+++. .+.+|||||++.. .+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA------KFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH------HHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCchh------HHHHhCCEEEE
Confidence 4678999999999999999999999988775677765443 3666665 7889999999762 35677999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC--CCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL--AKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|++++.+ +.....|+..+.........++|+++|+||+|+.. .+.. .+....+.+..
T Consensus 79 v~D~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------- 140 (178)
T 2iwr_A 79 VFSLEDENS-FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------- 140 (178)
T ss_dssp EEETTCHHH-HHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-----------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-----------------
Confidence 999999665 77777754333221111123499999999999942 2221 11122222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 141 --------------------~~~~~~~~Sa~~~~~---i~~lf~~l~~ 165 (178)
T 2iwr_A 141 --------------------KRCSYYETXATYGLN---VDRVFQEVAQ 165 (178)
T ss_dssp --------------------SSEEEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --------------------cCCeEEEEeccccCC---HHHHHHHHHH
Confidence 127899999999999 9999999864
No 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=5.6e-29 Score=183.33 Aligned_cols=157 Identities=16% Similarity=0.286 Sum_probs=119.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-FPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-CCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-HHHHHHhcCCEEE
Confidence 35689999999999999999999988876655 55555443 3566664 678999999999877 6788899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+..... ..++|+++|+||+|+...+... +....+.+..+
T Consensus 83 ~v~d~~~~~s-~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 142 (181)
T 3t5g_A 83 LVYSVTSIKS-FEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAESWN----------------- 142 (181)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHHHhC-----------------
Confidence 9999999655 8888888777765422 2349999999999997655432 22222222222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++||++|+| +++++++|.+
T Consensus 143 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 165 (181)
T 3t5g_A 143 ---------------------AAFLESSAKENQT---AVDVFRRIIL 165 (181)
T ss_dssp ---------------------CEEEECCTTSHHH---HHHHHHHHHH
T ss_pred ---------------------CcEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=2.2e-28 Score=180.63 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=119.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA-IRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-HHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHH-HHHHHhccCCEE
Confidence 345689999999999999999999998876655 44444433 3566665 789999999999888 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.+.. .+..+ +.+..
T Consensus 94 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~---------------- 153 (187)
T 2a9k_A 94 LCVFSITEMES-FAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQW---------------- 153 (187)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHCC--TTCCEEEEEECGGGGGGCCSCHHHHHH-HHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccCccCHHHHHH-HHHHc----------------
Confidence 99999998665 77777777776653222 24999999999999765432 22221 11111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 154 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 177 (187)
T 2a9k_A 154 ----------------------NVNYVETSAKTRAN---VDKVFFDLMR 177 (187)
T ss_dssp ----------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CCeEEEeCCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999865
No 37
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=1.4e-28 Score=179.11 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---cccceeeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---TSLKENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+||+++|++|||||||+++|++....... ++.......+.+++. .+.+|||||++.+...++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 368999999999999999999976653322 233334445666665 788999999998876456677888999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....|+..+....... ++|+++|+||+|+.+.+... +....+.+..+
T Consensus 82 v~d~~~~~s-~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------ 140 (169)
T 3q85_A 82 VFSVTDRRS-FSKVPETLLRLRAGRPHH--DLPVILVGNKSDLARSREVSLEEGRHLAGTLS------------------ 140 (169)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHHSTTS--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT------------------
T ss_pred EEECCChHH-HHHHHHHHHHHHhcccCC--CCCEEEEeeCcchhhcccCCHHHHHHHHHHcC------------------
Confidence 999999654 888888888877643222 49999999999997554432 22222222222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 141 --------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 163 (169)
T 3q85_A 141 --------------------CKHIETSAALHHN---TRELFEGAVR 163 (169)
T ss_dssp --------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CcEEEecCccCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=6.1e-28 Score=177.58 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=119.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+.... ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-LAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-GTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-hhHHHhccCCE
Confidence 345689999999999999999999998876544 5555433 34556554 899999999999988 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|+|++++.+ +.....|+..+.... .+++|+++|+||+|+.+.+... +....+.+..
T Consensus 88 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 147 (181)
T 2efe_B 88 AIIVFDVTNQAS-FERAKKWVQELQAQG---NPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN---------------- 147 (181)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccccCCHHHHHHHHHHc----------------
Confidence 999999998654 777777777766532 2349999999999997654421 1112222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 148 ----------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 171 (181)
T 2efe_B 148 ----------------------GLFFMETSAKTATN---VKEIFYEIAR 171 (181)
T ss_dssp ----------------------TCEEEECCSSSCTT---HHHHHHHHHH
T ss_pred ----------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999975
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=9.9e-29 Score=184.22 Aligned_cols=156 Identities=10% Similarity=0.150 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++..... +.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR-LRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-TGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH-HhHhhccCCcEEE
Confidence 45689999999999999999999998886554 566655444 556655 679999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC--C-HHHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK--S-SSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|++++.+ +..+...|...+... . .++|+++|+||+|+.... . ..+....+.+.++
T Consensus 100 ~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------------- 160 (194)
T 3reg_A 100 LCFAVNNRTS-FDNISTKWEPEIKHY-I--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG--------------- 160 (194)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH-C--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT---------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC---------------
Confidence 9999999655 777644444444321 1 349999999999997532 1 1222222322222
Q ss_pred hcccccccCCCCCCeeecCCCCcEE-EEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVS-FCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.. +++|||++|+| +++++++|.+
T Consensus 161 -----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 184 (194)
T 3reg_A 161 -----------------------CVAYIEASSVAKIG---LNEVFEKSVD 184 (194)
T ss_dssp -----------------------CSCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CCEEEEeecCCCCC---HHHHHHHHHH
Confidence 33 79999999999 9999999875
No 40
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=5.7e-29 Score=183.60 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+... .||++... ..+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 84 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGI 84 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------CCTTTTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-hHHHHHhcCCEE
Confidence 3468999999999999999999998877544 36666443 44667663 899999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 85 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 144 (183)
T 2fu5_C 85 MLVYDITNEKS-FDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLALDYG---------------- 144 (183)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC----------------
Confidence 99999999665 777777777765421 234899999999999865442 222222222222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 145 ----------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 167 (183)
T 2fu5_C 145 ----------------------IKFMETSAKANIN---VENAFFTLAR 167 (183)
T ss_dssp ----------------------CEEEECCC---CC---HHHHHHHHHH
T ss_pred ----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=3.4e-28 Score=180.61 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=119.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE---EEEecCc-----------cEEEEECCCchhhhhhhH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG---NFTYEKK-----------NIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~---~~~~~~~-----------~~~i~D~~G~~~~~~~~~ 73 (211)
...+||+++|++|||||||+++|.++.+... .+|++.... .+.+++. .+.+|||||++.+.. .+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~ 87 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS-LT 87 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH-HH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH-HH
Confidence 4468999999999999999999999887544 366666544 3455532 799999999999988 68
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhc
Q psy4433 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~ 152 (211)
..+++++|++|+|+|++++.+ +..+..|+..+....... ++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------ 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQS-FLNVRNWISQLQMHAYSE--NPDIVLCGNKSDLEDQRAVKEEEARELAEKYG------ 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSSSS--SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT------
T ss_pred HHHHcCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCC--CCCEEEEEECcccccccccCHHHHHHHHHHcC------
Confidence 889999999999999998655 777777777766532222 3899999999999764432 122222222221
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 159 --------------------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 181 (195)
T 3bc1_A 159 --------------------------------IPYFETSAANGTN---ISHAIEMLLD 181 (195)
T ss_dssp --------------------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------------------CCEEEEECCCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999865
No 42
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=4.2e-28 Score=175.43 Aligned_cols=155 Identities=17% Similarity=0.295 Sum_probs=116.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEEE
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v 86 (211)
++||+++|++|||||||++++.++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-HHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH-HHHHhhccCCEEEEE
Confidence 579999999999999999999988876554 4444433 33556554 688999999998888 688888999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy4433 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|++++.+ +.....|+..+...... .++|+++|+||+|+.+.....+....+.+..+
T Consensus 82 ~d~~~~~~-~~~~~~~~~~i~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------------------- 138 (166)
T 2ce2_X 82 FAINNTKS-FEDIHQYREQIKRVKDS--DDVPMVLVGNKSDLAARTVESRQAQDLARSYG-------------------- 138 (166)
T ss_dssp EETTCHHH-HHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT--------------------
T ss_pred EECCCHHH-HHHHHHHHHHHHHhcCC--CCCcEEEEEEchhhhhcccCHHHHHHHHHHcC--------------------
Confidence 99998654 77777776666543221 24999999999999864333333333332222
Q ss_pred cccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 167 TFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 139 ------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 161 (166)
T 2ce2_X 139 ------------------IPYIETSAKTRQG---VEDAFYTLVR 161 (166)
T ss_dssp ------------------CCEEEECTTTCTT---HHHHHHHHHH
T ss_pred ------------------CeEEEecCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 43
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.1e-28 Score=208.67 Aligned_cols=161 Identities=20% Similarity=0.380 Sum_probs=133.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLD 88 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d 88 (211)
.+.+||+++|.+|||||||+++|+++.+....||++.....+.+++..+.+|||||++.+.. ++..+++.+|++|+|||
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-LWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSG-GGGGGGTTCCEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHH-HHHHHhccCCEEEEEEE
Confidence 45689999999999999999999999988888999999999999888999999999999998 68889999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccc
Q psy4433 89 SSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTF 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (211)
++++.+ +.....++..++......+ +|+++|+||+|+.+.....++... +.. ..
T Consensus 399 ~~~~~s-~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~~~~~~~~~----~~~-~~------------------ 452 (497)
T 3lvq_E 399 CADRDR-IDEARQELHRIINDREMRD--AIILIFANKQDLPDAMKPHEIQEK----LGL-TR------------------ 452 (497)
T ss_dssp TTCGGG-HHHHHHHHHHHHTSGGGTT--CEEEEEEECCSSSSCCCHHHHHHH----TTC-TT------------------
T ss_pred CcchhH-HHHHHHHHHHHhhhhhcCC--CcEEEEEECCCCCcCCCHHHHHHH----hch-hh------------------
Confidence 999665 8888999999887544444 999999999999876554433222 110 00
Q ss_pred cCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 169 LGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+++++|||++|+| |+++++||.+
T Consensus 453 -----------~~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 480 (497)
T 3lvq_E 453 -----------IRDRNWYVQPSCATSGDG---LYEGLTWLTS 480 (497)
T ss_dssp -----------CCSSCEEEEECBTTTTBT---HHHHHHHHHH
T ss_pred -----------hhcCCeEEEEEECCCCCC---HHHHHHHHHH
Confidence 002337899999999999 9999999975
No 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=181.01 Aligned_cols=155 Identities=27% Similarity=0.335 Sum_probs=119.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+++.+...+ ++++. ....+.+++. .+.+|||||++.+.. .+..+++.+|+++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-THHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-hHHHHHhhCCEEE
Confidence 4589999999999999999999998875544 55554 3445677764 799999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... .....+.+.++
T Consensus 94 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 152 (196)
T 3tkl_A 94 VVYDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG----------------- 152 (196)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------
Confidence 9999999654 777777776665422 2348999999999998665432 22222322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 153 ---------------------~~~~~~Sa~~g~g---v~~l~~~l~~ 175 (196)
T 3tkl_A 153 ---------------------IPFLETSAKNATN---VEQSFMTMAA 175 (196)
T ss_dssp ---------------------CCEEEECTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CcEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 45
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.6e-28 Score=183.42 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++.+|++|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS-ITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH-HHHHHHhcCCEEE
Confidence 4589999999999999999999998875444 6665443 44667665 789999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +..+..|+..+... ...++|+++|+||+|+...+... +....+.+..+
T Consensus 104 ~v~D~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~----------------- 162 (201)
T 2ew1_A 104 LTYDITCEES-FRCLPEWLREIEQY---ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD----------------- 162 (201)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------
Confidence 9999998654 77777777666542 12348999999999997554321 21222221111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 163 ---------------------~~~~~~Sa~~g~g---v~~l~~~l~~ 185 (201)
T 2ew1_A 163 ---------------------MYYLETSAKESDN---VEKLFLDLAC 185 (201)
T ss_dssp ---------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.8e-28 Score=178.38 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=114.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|.++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-ITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-CCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-hHHHHhccCCEEE
Confidence 3579999999999999999999998875443 5555443 44566654 789999999999888 6788899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.......+....+.+..+
T Consensus 81 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------------ 138 (170)
T 1g16_A 81 LVYDITDERT-FTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAKELG------------------ 138 (170)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT------------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECccCCcCccCHHHHHHHHHHcC------------------
Confidence 9999998654 777777776665432 234899999999999543333222333332222
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 139 --------------------~~~~~~Sa~~~~g---v~~l~~~l~~ 161 (170)
T 1g16_A 139 --------------------IPFIESSAKNDDN---VNEIFFTLAK 161 (170)
T ss_dssp --------------------CCEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 47
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=180.99 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=115.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccccc--eeeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESCTSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|++.... ...++++ .....+.+++. .+.+|||+|++.+...++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356689999999999999999999754432 2223333 33444667765 788999999987764367778889999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+|+|+|++++.+ +..+..|+..+...... .++|+++|+||+|+...+... +....+.+...
T Consensus 100 ~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~--------------- 161 (195)
T 3cbq_A 100 FLIVFSVTDRRS-FSKVPETLLRLRAGRPH--HDLPVILVGNKSDLARSREVSLEEGRHLAGTLS--------------- 161 (195)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHSTT--SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEeechhccccCCcCHHHHHHHHHHhC---------------
Confidence 999999999655 88888888777643221 249999999999997654432 11222222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| +++++++|.+
T Consensus 162 -----------------------~~~~e~Sa~~~~~---v~~lf~~l~~ 184 (195)
T 3cbq_A 162 -----------------------CKHIETSAALHHN---TRELFEGAVR 184 (195)
T ss_dssp -----------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CEEEEEcCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=5.1e-28 Score=177.46 Aligned_cols=155 Identities=21% Similarity=0.308 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
+++||+++|++|||||||+++|+++.+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-GSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-HHHHHhcCCCEEE
Confidence 4589999999999999999999988875544 555543 344566664 799999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..+
T Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 150 (179)
T 2y8e_A 92 VVYDITNTNS-FHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN----------------- 150 (179)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHHH---TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------
Confidence 9999998654 777777777665432 1348999999999997654432 11112221111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 151 ---------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 173 (179)
T 2y8e_A 151 ---------------------VMFIETSAKAGYN---VKQLFRRVAA 173 (179)
T ss_dssp ---------------------CEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999875
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=2.3e-28 Score=177.49 Aligned_cols=155 Identities=13% Similarity=0.202 Sum_probs=118.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-ITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-CCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-HHHHHhcCCCEE
Confidence 45689999999999999999999998876554 555543 344566654 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... .+.|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 82 i~v~d~~~~~s-~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 140 (168)
T 1z2a_A 82 VLVFSTTDRES-FEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---------------- 140 (168)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcC----------------
Confidence 99999998654 777777776665432 23899999999999765432 222222222222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| ++++++||.+
T Consensus 141 ----------------------~~~~~~Sa~~~~~---i~~l~~~l~~ 163 (168)
T 1z2a_A 141 ----------------------LRFYRTSVKEDLN---VSEVFKYLAE 163 (168)
T ss_dssp ----------------------CEEEECBTTTTBS---SHHHHHHHHH
T ss_pred ----------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999865
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=4.5e-28 Score=179.12 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 86 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS-VTRSYYRGAAGA 86 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTSTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHHhcCCEE
Confidence 44689999999999999999999998875544 555543 344566664 889999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+.... ....+.+.
T Consensus 87 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------------ 144 (186)
T 2bme_A 87 LLVYDITSRET-YNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFAQE------------------ 144 (186)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH------------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999999654 777777776654321 23489999999999975444321 11111111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 145 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 169 (186)
T 2bme_A 145 --------------------NELMFLETSALTGEN---VEEAFVQCAR 169 (186)
T ss_dssp --------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999864
No 51
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=2e-28 Score=178.27 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=111.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-LGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-hHHHHhccCCE
Confidence 345689999999999999999999988875443 66665443 4566555 789999999999888 68888899999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..
T Consensus 82 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 141 (170)
T 1z08_A 82 AILVYDITDEDS-FQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESV---------------- 141 (170)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT----------------
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHc----------------
Confidence 999999998654 777777766654321 1238999999999997654322 1112222111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 142 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 165 (170)
T 1z08_A 142 ----------------------GAKHYHTSAKQNKG---IEELFLDLCK 165 (170)
T ss_dssp ----------------------TCEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CCeEEEecCCCCCC---HHHHHHHHHH
Confidence 16789999999999 9999999864
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=6.4e-28 Score=179.10 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=118.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ ++++. ....+.+++. .+.+|||||++.+...++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 45689999999999999999999998876544 55554 3445666664 8999999999999833788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+..... ..++|+++|+||+|+.+.+.. .+....+.+..
T Consensus 98 ilv~D~~~~~s-~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 157 (189)
T 1z06_A 98 VFVYDMTNMAS-FHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH----------------- 157 (189)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHHHHHHHc-----------------
Confidence 99999998655 7777777777665322 234999999999999765442 22222222211
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecC---CCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS---ASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg---~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++| +| +++++++|.+
T Consensus 158 ---------------------~~~~~~~Sa~~~~~~~~---i~~l~~~l~~ 184 (189)
T 1z06_A 158 ---------------------SMPLFETSAKNPNDNDH---VEAIFMTLAH 184 (189)
T ss_dssp ---------------------TCCEEECCSSSGGGGSC---HHHHHHHHC-
T ss_pred ---------------------CCEEEEEeCCcCCcccC---HHHHHHHHHH
Confidence 157899999999 89 9999999864
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=5.3e-28 Score=177.28 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=117.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
..+.+||+++|++|||||||+++|+++.+...+ ++++... ..+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS-LRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH-HHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh-hHHHHHhcCCE
Confidence 345789999999999999999999988875443 6666544 44566665 899999999999988 68889999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcC-cCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQ-VQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+..... ....++|+++|+||+|+.......+....+.+.
T Consensus 83 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------- 144 (177)
T 1wms_A 83 CLLTFSVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----------------- 144 (177)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----------------
T ss_pred EEEEEECcCHHH-HHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-----------------
Confidence 999999998654 6666666666543211 111348999999999997433222222222110
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| +++++++|.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 170 (177)
T 1wms_A 145 --------------------NGDYPYFETSAKDATN---VAAAFEEAVR 170 (177)
T ss_dssp --------------------TTCCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 0125789999999999 9999999865
No 54
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=184.51 Aligned_cols=157 Identities=16% Similarity=0.252 Sum_probs=117.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecC--ccEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEK--KNIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|.+|||||||+++|+++.+...+ +|++..... +.+++ ..+.+|||||++.+.. ++..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-LPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-CCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-HHHHHHhcCCEEE
Confidence 45789999999999999999999998887655 555544322 33333 3789999999999888 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... .....+.+...
T Consensus 101 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 160 (201)
T 3oes_A 101 LVYSVTSLHS-FQVIESLYQKLHEGHGK--TRVPVVLVGNKADLSPEREVQAVEGKKLAESWG----------------- 160 (201)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEeCCCHHH-HHHHHHHHHHHHHhcCC--CCCCEEEEEECccCccccccCHHHHHHHHHHhC-----------------
Confidence 9999999655 88888888887764322 348999999999998655432 22223332222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 161 ---------------------~~~~~~Sa~~~~~---v~~l~~~l~~ 183 (201)
T 3oes_A 161 ---------------------ATFMESSARENQL---TQGIFTKVIQ 183 (201)
T ss_dssp ---------------------CEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.6e-28 Score=179.26 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=118.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccccceeeE--EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+... .++.+.... .+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS-LAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG-GTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh-hhHHhhccCCEE
Confidence 4568999999999999999999999887543 366665443 3445443 899999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+.
T Consensus 100 ilV~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~------------------ 157 (192)
T 2fg5_A 100 VIVYDITKQDS-FYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYAES------------------ 157 (192)
T ss_dssp EEEEETTCTHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT------------------
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHH------------------
Confidence 99999998665 777777776665422 2349999999999997543321 111112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| +++++++|.+
T Consensus 158 --------------------~~~~~~~~Sa~~~~g---i~~l~~~l~~ 182 (192)
T 2fg5_A 158 --------------------IGAIVVETSAKNAIN---IEELFQGISR 182 (192)
T ss_dssp --------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------cCCEEEEEeCCCCcC---HHHHHHHHHH
Confidence 126889999999999 9999999975
No 56
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=5.2e-28 Score=179.96 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=117.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ +|++. ....+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~i 97 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-ITRSYYRGAAGA 97 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-CCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-hHHHHhccCCEE
Confidence 45689999999999999999999998875544 55554 3445667664 889999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+.. .+....+.+..+
T Consensus 98 i~v~d~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 157 (191)
T 2a5j_A 98 LLVYDITRRET-FNHLTSWLEDARQHS---SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG---------------- 157 (191)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccCCccccCHHHHHHHHHHcC----------------
Confidence 99999998654 777777777765422 134999999999999764432 112222222221
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| ++++++||.+
T Consensus 158 ----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 180 (191)
T 2a5j_A 158 ----------------------LIFMETSAKTACN---VEEAFINTAK 180 (191)
T ss_dssp ----------------------CEEEEECTTTCTT---HHHHHHHHHH
T ss_pred ----------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999864
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.2e-27 Score=178.91 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC-------------------------------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------------------------- 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------------------------- 54 (211)
.+.+||+++|++|||||||+++|++..+...+ +|++.... .+.+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 56799999999999999999999998876544 55554333 344443
Q ss_pred --------ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCC
Q psy4433 55 --------KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126 (211)
Q Consensus 55 --------~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (211)
..+.+|||||++.+.. .+..+++.+|++++|+|++++.+ +.....|+..+.... . .|+++|+||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~---~--~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-IVPLYYRGATCAIVVFDISNSNT-LDRAKTWVNQLKISS---N--YIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-THHHHHTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS---C--CEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHH-HHHHHhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHhhC---C--CcEEEEEECC
Confidence 4789999999999988 68889999999999999998654 777777777765432 2 8999999999
Q ss_pred CccCCC-CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy4433 127 DQTLAK-SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 127 Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
|+.... ...+..+.+ +.. .+++++|||++|+| +++++
T Consensus 158 D~~~~~~~~~~~~~~~-~~~--------------------------------------~~~~~~~Sa~~~~~---i~~l~ 195 (208)
T 3clv_A 158 DKNKFQVDILEVQKYA-QDN--------------------------------------NLLFIQTSAKTGTN---IKNIF 195 (208)
T ss_dssp TCC-CCSCHHHHHHHH-HHT--------------------------------------TCEEEEECTTTCTT---HHHHH
T ss_pred CcccccCCHHHHHHHH-HHc--------------------------------------CCcEEEEecCCCCC---HHHHH
Confidence 943222 222222221 111 16889999999999 99999
Q ss_pred HHHhh
Q psy4433 206 DWMVT 210 (211)
Q Consensus 206 ~~i~~ 210 (211)
+||.+
T Consensus 196 ~~l~~ 200 (208)
T 3clv_A 196 YMLAE 200 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6e-28 Score=180.32 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=117.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++..... +.+++. .+.+|||||++. .. .+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~-~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TI-QREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CH-HHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-cc-chhhhhccCCEE
Confidence 356899999999999999999999998876555 555554433 566654 799999999988 44 678888999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..+..|+..+...... .++|+++|+||+|+...+... +....+.+...
T Consensus 103 ilv~D~~~~~s-~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~---------------- 163 (196)
T 2atv_A 103 VLVYDITDRGS-FEEVLPLKNILDEIKKP--KNVTLILVGNKADLDHSRQVSTEEGEKLATELA---------------- 163 (196)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHHTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHhC----------------
Confidence 99999999665 77777777666543222 248999999999997654332 22222222221
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+ | ++++++||.+
T Consensus 164 ----------------------~~~~~~Sa~~g~~g---i~~l~~~l~~ 187 (196)
T 2atv_A 164 ----------------------CAFYECSACTGEGN---ITEIFYELCR 187 (196)
T ss_dssp ----------------------SEEEECCTTTCTTC---HHHHHHHHHH
T ss_pred ----------------------CeEEEECCCcCCcC---HHHHHHHHHH
Confidence 688999999999 9 9999999864
No 59
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.2e-27 Score=175.52 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=117.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 91 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-VTRSYYRGAAGA 91 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH-HHHHHHHTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh-hHHHHhccCCEE
Confidence 34689999999999999999999998876554 455543 334556554 789999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 92 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 150 (179)
T 1z0f_A 92 LMVYDITRRST-YNHLSSWLTDARNLT---NPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN----------------- 150 (179)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEeCcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 777777766665421 2348999999999997554321 1111221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+++++|||++|+| ++++++||.+
T Consensus 151 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (179)
T 1z0f_A 151 ---------------------GLLFLEASAKTGEN---VEDAFLEAAK 174 (179)
T ss_dssp ---------------------TCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-27 Score=178.70 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=118.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+++.+...+ +|.+... ..+.+++. .+.+|||||++.+.. .+..+++++|++|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii 85 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT-ITTAYYRGAMGFI 85 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHTTGGGCSEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc-hHHHhhcCCCEEE
Confidence 4589999999999999999999998875543 5555443 34555554 899999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+.. .+....+.+.++
T Consensus 86 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 144 (203)
T 1zbd_A 86 LMYDITNEES-FNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG----------------- 144 (203)
T ss_dssp EEEETTCHHH-HHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-----------------
Confidence 9999998654 777777776665421 234899999999999765432 222222322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 145 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (203)
T 1zbd_A 145 ---------------------FEFFEASAKDNIN---VKQTFERLVD 167 (203)
T ss_dssp ---------------------CEEEECBTTTTBS---SHHHHHHHHH
T ss_pred ---------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 61
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=181.11 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=115.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++..+. .+.+++. .+.+|||||++.+.. + ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-C-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-T-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-H-HHHHhhCCEE
Confidence 345689999999999999999999998876655 56655442 3555554 788999999998876 4 5688899999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|||++++.+ +..+..|+..+.........++|+++|+||+|+...+... +....+.+.++
T Consensus 96 ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------------- 158 (187)
T 3c5c_A 96 LVVYSVDSRQS-FDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG---------------- 158 (187)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC----------------
Confidence 99999998665 8888888777664311001238999999999997654322 22222332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEee-ecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTG-LDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++||| ++|+| +++++++|.+
T Consensus 159 ----------------------~~~~e~Sa~~~g~g---v~~lf~~l~~ 182 (187)
T 3c5c_A 159 ----------------------CLFFEVSACLDFEH---VQHVFHEAVR 182 (187)
T ss_dssp ----------------------CEEEECCSSSCSHH---HHHHHHHHHH
T ss_pred ----------------------CcEEEEeecCcccc---HHHHHHHHHH
Confidence 68899999 89999 9999999864
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=3.6e-28 Score=184.24 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=117.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecC------------ccEEEEECCCchhhhhhhH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEK------------KNIKIVDLPGEDRLRNKFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~------------~~~~i~D~~G~~~~~~~~~ 73 (211)
...+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++ ..+.+|||||++.+.. .+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~ 101 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS-LT 101 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH-HH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh-HH
Confidence 34589999999999999999999998875544 55554433 344443 3799999999999988 68
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhc
Q psy4433 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTK 152 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~ 152 (211)
..+++.+|++|+|+|++++.+ +.....|+..+...... .++|+++|+||+|+...+... +....+.+..+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~------ 172 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQANAYC--ENPDIVLIGNKADLPDQREVNERQARELADKYG------ 172 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTCCCCCTT--TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT------
T ss_pred HHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCc--CCCCEEEEEECCccccccccCHHHHHHHHHHCC------
Confidence 889999999999999998655 77777776655433211 349999999999997654432 22222222111
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 173 --------------------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 195 (217)
T 2f7s_A 173 --------------------------------IPYFETSAATGQN---VEKAVETLLD 195 (217)
T ss_dssp --------------------------------CCEEEEBTTTTBT---HHHHHHHHHH
T ss_pred --------------------------------CcEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 63
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=179.45 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=118.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
....+||+++|++|||||||+++|+++.+...+ ++.+. ....+.+++. .+.+|||||++.+.. .+..+++.+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~ 84 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-ITSTYYRGTHG 84 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-CCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-hHHHHhccCCE
Confidence 445689999999999999999999988875443 55554 3445677774 799999999999888 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+..... .....+.....
T Consensus 85 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------- 144 (181)
T 3tw8_B 85 VIVVYDVTSAES-FVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKFAGQMG--------------- 144 (181)
T ss_dssp EEEEEETTCHHH-HHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---------------
Confidence 999999999654 777777777765421 249999999999998655432 22222222222
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 145 -----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (181)
T 3tw8_B 145 -----------------------IQLFETSAKENVN---VEEMFNCITE 167 (181)
T ss_dssp -----------------------CCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
No 64
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.3e-28 Score=177.33 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccceeeEE--EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKG 82 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ 82 (211)
.+.+||+++|++|||||||+++|+++.+.. ..+|++..... +.+++. .+.+|||||++.+.. .+..+++++|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-VTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHccCCCE
Confidence 456899999999999999999999988742 33666655443 456665 889999999999988 68888999999
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchh
Q psy4433 83 IVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 83 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
+++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..+
T Consensus 87 ii~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------- 147 (180)
T 2g6b_A 87 LLLLYDVTNKAS-FDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG--------------- 147 (180)
T ss_dssp EEEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---------------
T ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHhC---CCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---------------
Confidence 999999998654 777777776665422 1348999999999998654322 12222222121
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 148 -----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 170 (180)
T 2g6b_A 148 -----------------------LPFMETSAKTGLN---VDLAFTAIAK 170 (180)
T ss_dssp -----------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=7.5e-28 Score=178.69 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=108.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|.+|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-MRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-HHHHhhCcCCEE
Confidence 345689999999999999999999988876554 4444333 33566654 689999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....|+..+...... .++|+++|+||+|+.......+....+.+..+
T Consensus 97 i~v~d~~~~~s-~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 156 (190)
T 3con_A 97 LCVFAINNSKS-FADINLYREQIKRVKDS--DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG----------------- 156 (190)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHHhCC--CCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------
Confidence 99999998654 77777766665432211 23899999999999763322222223322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 157 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 179 (190)
T 3con_A 157 ---------------------IPFIETSAKTRQG---VEDAFYTLVR 179 (190)
T ss_dssp ---------------------CCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CeEEEEeCCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.3e-28 Score=181.01 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++.+.. ...+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~ 99 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT-ITTAYYRGAMGF 99 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH-HHHHHHTTCCEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHHHccCCEE
Confidence 45689999999999999999999988775544 555433 344555544 799999999999998 788899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-HHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-SVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+... ...++|+++|+||+|+.+.+.. .+....+.+..+
T Consensus 100 i~v~d~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 159 (191)
T 3dz8_A 100 ILMYDITNEES-FNAVQDWATQIKTY---SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG---------------- 159 (191)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC----------------
Confidence 99999998654 77777776666542 1234999999999999765443 222223332222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 160 ----------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 182 (191)
T 3dz8_A 160 ----------------------FDFFEASAKENIS---VRQAFERLVD 182 (191)
T ss_dssp ----------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999865
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.5e-28 Score=175.66 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=115.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|.++.+...+ +|.+..... +..++. .+.+|||||++.+.. ++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-MQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH-HHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH-HHHHhcccCCEEEE
Confidence 4689999999999999999999998875443 555544433 444443 789999999999888 68888899999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|++++.+ +.....++..+..... ...++|+++|+||+|+.+.+.... ....+.....
T Consensus 81 v~d~~~~~~-~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~------------------ 140 (172)
T 2erx_A 81 VYSITSRQS-LEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWK------------------ 140 (172)
T ss_dssp EEETTCHHH-HHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT------------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhC------------------
Confidence 999998654 6666666655543211 112389999999999976544321 1122221111
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 141 --------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 163 (172)
T 2erx_A 141 --------------------CAFMETSAKLNHN---VKELFQELLN 163 (172)
T ss_dssp --------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CeEEEecCCCCcC---HHHHHHHHHH
Confidence 6789999999999 9999999976
No 68
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9e-28 Score=179.32 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=116.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....++|+++|++|||||||+++|.++.+...+ +|++..... +..++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPA-MQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHH-HHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHH-HHHHhhccCCEE
Confidence 356789999999999999999999998876544 555544433 444444 789999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....++..+..... ...++|+++|+||+|+.......+....+.....
T Consensus 84 i~v~d~~~~~s-~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 144 (199)
T 2gf0_A 84 ILVFSVTSKQS-LEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK----------------- 144 (199)
T ss_dssp EEEEETTCHHH-HHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------
Confidence 99999998654 6666666544433111 0123899999999999764332222222222222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+++|||++|+| ++++++||.+
T Consensus 145 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 167 (199)
T 2gf0_A 145 ---------------------CAFMETSAKMNYN---VKELFQELLT 167 (199)
T ss_dssp ---------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------CeEEEEecCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999875
No 69
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=178.00 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE--EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG--NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~--~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|++..+...+ +|.+.... .+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~v 101 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-ITSAYYRGAVGA 101 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-THHHHHTTCCEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-hhHHHhccCCEE
Confidence 34589999999999999999999998876544 55554433 3455443 889999999999888 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+....
T Consensus 102 i~v~D~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 160 (193)
T 2oil_A 102 LLVFDLTKHQT-YAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFAENN----------------- 160 (193)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHHHHc-----------------
Confidence 99999998654 777777777776432 2348999999999997654321 1112221111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| +++++++|.+
T Consensus 161 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 184 (193)
T 2oil_A 161 ---------------------GLLFLETSALDSTN---VELAFETVLK 184 (193)
T ss_dssp ---------------------TCEEEEECTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
No 70
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=180.74 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=109.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-LRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-SGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-HhHhhcCCCcEE
Confidence 456789999999999999999999998876555 55554443 3566665 677999999999888 678889999999
Q ss_pred EEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-------------HHHHHHHHHHHHHHh
Q psy4433 84 VYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-------------SVVKTLLQKELNLVR 149 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-------------~~~~~~l~~~~~~~~ 149 (211)
++|+|++++.+ +.... .|+..+... . .++|+++|+||+|+...... .+....+.+.++
T Consensus 96 i~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 167 (201)
T 2q3h_A 96 LLCFSVVSPSS-FQNVSEKWVPEIRCH--C--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK--- 167 (201)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT---
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC---
Confidence 99999999665 77765 455444432 1 24999999999999753211 111111111111
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 168 ----------------------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 191 (201)
T 2q3h_A 168 ----------------------------------AASYIECSALTQKN---LKEVFDAAIV 191 (201)
T ss_dssp ----------------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------------CcEEEEEecCCCCC---HHHHHHHHHH
Confidence 13789999999999 9999999864
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=179.42 Aligned_cols=157 Identities=22% Similarity=0.368 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|.+|||||||+++|+++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~i 102 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-ITSAYYRSAKGI 102 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH-HHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH-HHHHHhcCCCEE
Confidence 45689999999999999999999988875443 555543 445666664 789999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+... ...++|+++|+||+|+...+... +....+.+.+
T Consensus 103 ilV~D~~~~~s-~~~~~~~~~~i~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------- 161 (192)
T 2il1_A 103 ILVYDITKKET-FDDLPKWMKMIDKY---ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------- 161 (192)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHhc-----------------
Confidence 99999998654 66666665554332 12349999999999997654432 1111221110
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++|||++|+| +++++++|.+
T Consensus 162 --------------------~~~~~~~~SA~~g~g---i~~l~~~l~~ 186 (192)
T 2il1_A 162 --------------------TGMRFCEASAKDNFN---VDEIFLKLVD 186 (192)
T ss_dssp --------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred --------------------CCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 126889999999999 9999999864
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=179.05 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|.+.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~i 104 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS-IAKSYFRKADGV 104 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHH-HHHHHHHHCSEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh-hHHHHHhhCCEE
Confidence 45789999999999999999999998875443 555533 345666664 799999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC------CCCH-HHHHHHHHHHHHHHhhhccccc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL------AKSS-SVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------~~~~-~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
|+|+|++++.+ +.....|+..+... ...++|+++|+||+|+.+ .+.. .+....+.+..+
T Consensus 105 ilv~d~~~~~s-~~~~~~~~~~i~~~---~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---------- 170 (199)
T 2p5s_A 105 LLLYDVTCEKS-FLNIREWVDMIEDA---AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---------- 170 (199)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHH---C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT----------
T ss_pred EEEEECCChHH-HHHHHHHHHHHHHh---cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC----------
Confidence 99999998654 66777666555432 113489999999999962 1211 111222222111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 171 ----------------------------~~~~~~SA~~g~g---v~el~~~l~~ 193 (199)
T 2p5s_A 171 ----------------------------ALFCETSAKDGSN---IVEAVLHLAR 193 (199)
T ss_dssp ----------------------------CEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------CeEEEeeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999864
No 73
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1e-27 Score=181.85 Aligned_cols=192 Identities=25% Similarity=0.405 Sum_probs=131.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhc---
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS--- 79 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 79 (211)
...+.++|+++|++|||||||+++|.+..+.... |+++.. +....+.+|||||++.++. .+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~ 81 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRY-KLSDYLKTRAK 81 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTH-HHHHHHHHHGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHH-HHHHHHHhccc
Confidence 3567899999999999999999999998765432 332222 2445899999999999987 57777776
Q ss_pred -CCEEEEEEeCC-CchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH------Hhh
Q psy4433 80 -AKGIVYVLDSS-TVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL------VRR 150 (211)
Q Consensus 80 -~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~------~~~ 150 (211)
++++++|+|++ ++.+ +.....++..++..... ...++|+++|+||+|+........+.+.+.+++.. ...
T Consensus 82 ~~~~~i~v~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKK-LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTC-CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHH-HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999998 5444 77777887777653221 12349999999999999887766555444433322 456
Q ss_pred hcccccccchhhcc-cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 151 TKSNQLEDTNDVAA-NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++..+.+.+.. ....++.. ..|.|++++.++.++.+|+.+++ ++++++||.+
T Consensus 161 ~~~Sa~~~~~~~~~~~~~~l~~~-~~f~~~~~~~~v~~~~~s~~~~~----i~~~~~~~~~ 216 (218)
T 1nrj_B 161 NEVERKINEEDYAENTLDVLQST-DGFKFANLEASVVAFEGSINKRK----ISQWREWIDE 216 (218)
T ss_dssp HC--------------CTTC-----CCCGGGSSSCEEEEECBTTTTB----CHHHHHHHHH
T ss_pred cccccccccccchhhhcccccCC-CCccccccCCceEEEeccccCCc----HHHHHHHHHh
Confidence 77888776654332 22233433 67888889999999999999885 9999999964
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1e-27 Score=177.96 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=117.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ ++.+... ..+..++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~i 98 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-ITTAYYRGAMGF 98 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-SGGGGGTTCSEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-hHHHhccCCCEE
Confidence 34589999999999999999999998875443 5555443 33455544 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+... +....+.+.++
T Consensus 99 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 158 (189)
T 2gf9_A 99 LLMYDIANQES-FAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG---------------- 158 (189)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC----------------
Confidence 99999998654 777777776665421 2348999999999997654422 22222322222
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 159 ----------------------~~~~~~Sa~~g~g---i~~l~~~l~~ 181 (189)
T 2gf9_A 159 ----------------------FEFFEASAKENIN---VKQVFERLVD 181 (189)
T ss_dssp ----------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------CeEEEEECCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999865
No 75
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=179.78 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=113.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--cccccccccee--eEEEEecCc--cEEEEECCCchh-hhhhhHHHhhhcCC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--YFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR-LRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~-~~~~~~~~~~~~~d 81 (211)
...+||+++|++|||||||+++|++.. +...+++++.. ...+.+++. .+.+|||+|++. +.. +...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~-l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-LHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH-HHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhh-HHHHHHhhCC
Confidence 345899999999999999999999643 34555555543 344667766 578899999987 444 5666788899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccch
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++|+|||+++..+ +..+..|+..+...... .++|+++|+||+||...+.... ....+....+
T Consensus 114 ~~ilVydvt~~~s-f~~~~~~~~~l~~~~~~--~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-------------- 176 (211)
T 2g3y_A 114 AYLIVYSITDRAS-FEKASELRIQLRRARQT--EDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-------------- 176 (211)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHTSGGG--TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHHhCC--CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC--------------
Confidence 9999999999655 88888777766543222 2499999999999976544321 1112222111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 177 ------------------------~~~~e~SAk~g~~---v~elf~~l~~ 199 (211)
T 2g3y_A 177 ------------------------CKFIETSAAVQHN---VKELFEGIVR 199 (211)
T ss_dssp ------------------------CEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 6889999999999 9999999864
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=180.15 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...++|+++|++|||||||+++|++..+...+ ++++.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~i 96 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT-ITTAYYRGAMGI 96 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC-CCHHHHTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-HHHHHhccCCEE
Confidence 45689999999999999999999988875433 555543 345667764 799999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.......+....+.+...
T Consensus 97 i~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 155 (213)
T 3cph_A 97 ILVYDVTDERT-FTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------- 155 (213)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHT---TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------
Confidence 99999998654 777777776665422 134899999999999543332222223322222
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| ++++++||.+
T Consensus 156 ---------------------~~~~~~Sa~~~~g---i~~l~~~l~~ 178 (213)
T 3cph_A 156 ---------------------IPFIESSAKNDDN---VNEIFFTLAK 178 (213)
T ss_dssp ---------------------CCEEECBTTTTBS---SHHHHHHHHH
T ss_pred ---------------------CEEEEEeCCCCCC---HHHHHHHHHH
Confidence 5689999999999 9999999864
No 77
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=6.8e-28 Score=182.70 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE-EEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN-FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~-~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
...+||+++|++|||||||+++|+++.+...+ ||++..... +.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-VRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-TGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-HHHHHcCCCeEEE
Confidence 45789999999999999999999999887665 666655432 445544 789999999999988 7888999999999
Q ss_pred EEEeCCCchhhHHH-HHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 85 YVLDSSTVQKTLRD-VAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 85 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
+|||++++.+ +.. ...|+..+... . .++|+++|+||+|+.+.
T Consensus 104 ~v~d~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 104 LCFDISRPET-VDSALKKWRTEILDY--C--PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp EEEETTCTHH-HHHHHTHHHHHHHHH--C--TTSEEEEEEECGGGGGC
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccc
Confidence 9999999665 766 45555555432 1 34999999999999753
No 78
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.8e-28 Score=179.58 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-LRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-TGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-HHHHhcCCCCEEEE
Confidence 5689999999999999999999998876654 55554443 4566664 789999999999888 68888999999999
Q ss_pred EEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 86 VLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 86 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.+.
T Consensus 96 v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 96 CFSVVNPAS-FQNVKEEWVPELKEY--A--PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEETTCHHH-HHHHHHTHHHHHHHH--S--TTCCEEEEEECTTSTTC
T ss_pred EEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhccc
Confidence 999999665 76766 455544432 1 24999999999999754
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=1.3e-28 Score=181.34 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||++++.++.+...+ ||++.... .+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-LRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTT-TGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-hHHhhccCCCEEE
Confidence 56799999999999999999999998876554 45443322 2334443 677999999999888 6888899999999
Q ss_pred EEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH-----------HHHHHHHHHHHHHHhhhc
Q psy4433 85 YVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSS-----------SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----------~~~~~~l~~~~~~~~~~~ 152 (211)
+|+|++++.+ +..... |+..+... . .++|+++|+||+|+.+.... .+....+.+.++
T Consensus 85 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 153 (182)
T 3bwd_D 85 LAFSLISKAS-YENVSKKWIPELKHY--A--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------ 153 (182)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC------
Confidence 9999998665 766663 44444322 1 24999999999999755321 111111111111
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 154 -------------------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 177 (182)
T 3bwd_D 154 -------------------------------APAYIECSSKSQEN---VKGVFDAAIR 177 (182)
T ss_dssp -------------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------------------CCEEEEEECCCCCC---HHHHHHHHHH
Confidence 13789999999999 9999999865
No 80
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=1.5e-27 Score=179.37 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=119.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~v 84 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-ITSSYYRGSHGI 84 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-CCGGGGTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-HHHHhccCCCEE
Confidence 34689999999999999999999998876544 5555443 45666665 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+... +....+.+..
T Consensus 85 ilv~d~~~~~s-~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------- 143 (206)
T 2bcg_Y 85 IIVYDVTDQES-FNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN----------------- 143 (206)
T ss_dssp EEEEETTCHHH-HHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-----------------
Confidence 99999999664 777777776665422 2348999999999998654322 1222222111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 144 ---------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 167 (206)
T 2bcg_Y 144 ---------------------KMPFLETSALDSTN---VEDAFLTMAR 167 (206)
T ss_dssp ---------------------TCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------CCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 15789999999999 9999999865
No 81
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=3e-28 Score=184.06 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=114.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|.++.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-LRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-HHHhhccCCCEEE
Confidence 45689999999999999999999998876555 56655443 3556665 899999999999988 6888999999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH---------HHHHHHHHHHHHHHhhhccc
Q psy4433 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS---------SVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~l~~~~~~~~~~~~~ 154 (211)
+|+|++++.+ +.... .|+..+.... +++|+++|+||+|+.+.... .+....+.+.++
T Consensus 86 lv~d~~~~~s-~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 152 (212)
T 2j0v_A 86 LAFSLISKAS-YENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------- 152 (212)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT--------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC--------
Confidence 9999999665 77766 4544443221 24999999999999764321 111111221111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 153 -----------------------------~~~~~~~Sa~~g~g---i~~l~~~l~~ 176 (212)
T 2j0v_A 153 -----------------------------AAAYIECSSKTQQN---VKAVFDTAIK 176 (212)
T ss_dssp -----------------------------CSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------------CceEEEccCCCCCC---HHHHHHHHHH
Confidence 03789999999999 9999999864
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=6.3e-28 Score=181.54 Aligned_cols=171 Identities=12% Similarity=0.114 Sum_probs=112.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
..+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-LRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH-HHHHHhccCCEE
Confidence 356799999999999999999999988886555 44443333 3556665 566999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +......|...+.... .++|+++|+||+|+.......+.... .. . ......
T Consensus 106 i~v~d~~~~~s-~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~----~~---~------~~v~~~- 167 (204)
T 4gzl_A 106 LICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKE----KK---L------TPITYP- 167 (204)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHH----TT---C------CCCCHH-
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhc----cc---c------ccccHH-
Confidence 99999999665 7777633444433221 34999999999999765432211110 00 0 000000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+ .......++++|||++|+| +++++++|.+
T Consensus 168 ~~~~~----------~~~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 201 (204)
T 4gzl_A 168 QGLAM----------AKEIGAVKYLECSALTQRG---LKTVFDEAIR 201 (204)
T ss_dssp HHHHH----------HHHTTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHH----------HHhcCCcEEEEeeCCCCCC---HHHHHHHHHH
Confidence 00000 0001114689999999999 9999999976
No 83
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=181.50 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++... ..+.+++. .+.+|||||++.+.. ++..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-LRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-HHHHHhccCCEEE
Confidence 35689999999999999999999998876554 4554433 23566665 789999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.......+.. .. .. ....+. .
T Consensus 111 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~~~~---~~-~~---~~~v~~----~--- 171 (214)
T 2j1l_A 111 LCFDVTSPNS-FDNIFNRWYPEVNHF--C--KKVPIIVVGCKTDLRKDKSLVNKL---RR-NG---LEPVTY----H--- 171 (214)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--C--SSCCEEEEEECGGGGSCHHHHHHH---HH-TT---CCCCCH----H---
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHHh--C--CCCCEEEEEEChhhhccchhhhhh---cc-cc---cCcccH----H---
Confidence 9999998665 77776 444444321 1 248999999999997653221111 00 00 000000 0
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . .....+++|||++|+| +++++++|.+
T Consensus 172 ~~~~~~~---------~-~~~~~~~~~SA~~g~g---i~el~~~l~~ 205 (214)
T 2j1l_A 172 RGQEMAR---------S-VGAVAYLECSARLHDN---VHAVFQEAAE 205 (214)
T ss_dssp HHHHHHH---------H-TTCSEEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHHHHH---------h-cCCCEEEEecCCCCCC---HHHHHHHHHH
Confidence 0000000 0 0113789999999999 9999999865
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=179.42 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|+++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. .+..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-VTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-CCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-HHHHHhccCCEE
Confidence 45689999999999999999999988875544 555533 444666663 899999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+...+.... ....+.+.
T Consensus 102 i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------------ 159 (200)
T 2o52_A 102 LLVYDITSRET-YNSLAAWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEASRFAQE------------------ 159 (200)
T ss_dssp EEEEETTCHHH-HHTHHHHHHHHHHHT---CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH------------------
T ss_pred EEEEECcCHHH-HHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccccccCHHHHHHHHHH------------------
Confidence 99999999665 777777777665422 13499999999999975544321 11112111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.+++|||++|+| ++++++||.+
T Consensus 160 --------------------~~~~~~~~SA~~g~g---i~~l~~~l~~ 184 (200)
T 2o52_A 160 --------------------NELMFLETSALTGEN---VEEAFLKCAR 184 (200)
T ss_dssp --------------------TTCEEEEECTTTCTT---HHHHHHHHHH
T ss_pred --------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 116889999999999 9999999864
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=1.4e-27 Score=179.06 Aligned_cols=171 Identities=13% Similarity=0.214 Sum_probs=115.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...++||+++|.+|||||||+++|.++.+...+ ||++... ..+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-TGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-HHHHhcCCCCEE
Confidence 455789999999999999999999998876554 5555544 34666665 789999999999888 688889999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++.+ +......|...+... . .++|+++|+||+|+....... +.+.+ +. ..... ..
T Consensus 101 i~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~~---~~~v~----~~--- 162 (201)
T 2gco_A 101 LMCFSIDSPDS-LENIPEKWTPEVKHF-C--PNVPIILVGNKKDLRQDEHTR---RELAK-MK---QEPVR----SE--- 162 (201)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH-S--TTCCEEEEEECGGGTTCHHHH---HHHHT-TT---CCCCC----HH---
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEecHHhhcCccch---hhhcc-cc---cCcCC----HH---
Confidence 99999998654 767644444443321 1 249999999999997543211 11110 00 00000 00
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . .....+++|||++|+| +++++++|.+
T Consensus 163 ~~~~~~~---------~-~~~~~~~~~SA~~g~g---i~~l~~~i~~ 196 (201)
T 2gco_A 163 EGRDMAN---------R-ISAFGYLECSAKTKEG---VREVFEMATR 196 (201)
T ss_dssp HHHHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHH---------h-CCCcEEEEeeCCCCCC---HHHHHHHHHH
Confidence 0000000 0 0113789999999999 9999999875
No 86
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=9.4e-28 Score=178.76 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------------cccceeeEEE---EecCc--cEEEEECCCchhhhh
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC------------TSLKENVGNF---TYEKK--NIKIVDLPGEDRLRN 70 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------------~t~~~~~~~~---~~~~~--~~~i~D~~G~~~~~~ 70 (211)
....+||+++|++|||||||++.+.+ .+...+ ||.+...... .+++. .+.+|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 34678999999999999999977665 333322 3444333322 22333 799999999999998
Q ss_pred hhHHHhhhcCCEEEEEEeCCCc-----hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy4433 71 KFFDQYKSSAKGIVYVLDSSTV-----QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
++..+++++|++|+|+|++++ ...+..+..|+..+.. ...++|+++|+||+|+.+.....+..+.+.
T Consensus 90 -~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--- 161 (198)
T 3t1o_A 90 -SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----TLDDVPIVIQVNKRDLPDALPVEMVRAVVD--- 161 (198)
T ss_dssp -HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----CTTSSCEEEEEECTTSTTCCCHHHHHHHHC---
T ss_pred -HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----ccCCCCEEEEEEchhcccccCHHHHHHHHH---
Confidence 789999999999999999853 2235555566555421 123499999999999987655444333221
Q ss_pred HHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcE-EEEEEeeecCCCccchHHHHHHHhh
Q psy4433 146 NLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQV-SFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.... ++++|||++|+| ++++++||.+
T Consensus 162 ------------------------------------~~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 188 (198)
T 3t1o_A 162 ------------------------------------PEGKFPVLEAVATEGKG---VFETLKEVSR 188 (198)
T ss_dssp ------------------------------------TTCCSCEEECBGGGTBT---HHHHHHHHHH
T ss_pred ------------------------------------hcCCceEEEEecCCCcC---HHHHHHHHHH
Confidence 0114 789999999999 9999999875
No 87
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=1.4e-27 Score=175.57 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=106.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEec-Cc--cEEEEECCCchhhhhhhHHHhhhcC
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYE-KK--NIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~-~~--~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
...+.+||+++|++|||||||+++|+++.+...+ ++++. ....+.++ +. .+.+|||||++.+.. .+..+++.+
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~ 82 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-LGVAFYRGA 82 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------CCSTTC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-hhHHHhhcC
Confidence 3456789999999999999999999998875544 55544 33445555 22 789999999999888 688889999
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcC-cCCCCCcEEEEEeCCCccCCCC-H-HHHHHHHHHHHHHHhhhcccccc
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQ-VQSSRVNILVCCNKQDQTLAKS-S-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
|++++|+|++++.+ +.....|+..+..... ....++|+++|+||+|+..... . .+....+.+.
T Consensus 83 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------------- 148 (182)
T 1ky3_A 83 DCCVLVYDVTNASS-FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------------- 148 (182)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-------------
T ss_pred CEEEEEEECCChHH-HHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-------------
Confidence 99999999999654 7777777766654321 1123489999999999964321 1 1111122110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 149 ------------------------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 174 (182)
T 1ky3_A 149 ------------------------LGDIPLFLTSAKNAIN---VDTAFEEIAR 174 (182)
T ss_dssp ------------------------TTSCCEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------cCCCeEEEEecCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999865
No 88
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=1.3e-27 Score=176.47 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=113.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. ++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-TGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-HHHHhccCCcEEE
Confidence 45689999999999999999999988876554 55544333 3556655 677999999999988 6788889999999
Q ss_pred EEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.... .|+..+... . .++|+++|+||+|+.+..... +.+.. . ...... ..
T Consensus 82 ~v~d~~~~~s-~~~~~~~~~~~~~~~--~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~---~~~~v~------~~- 142 (186)
T 1mh1_A 82 ICFSLVSPAS-FENVRAKWYPEVRHH--C--PNTPIILVGTKLDLRDDKDTI---EKLKE-K---KLTPIT------YP- 142 (186)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH--S--TTSCEEEEEECHHHHTCHHHH---HHHHH-T---TCCCCC------HH-
T ss_pred EEEECCChhh-HHHHHHHHHHHHHHh--C--CCCCEEEEeEcccccccchhh---hhhcc-c---ccccCC------HH-
Confidence 9999998655 66666 344444321 1 149999999999997543211 11110 0 000000 00
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.. . ....++++|||++|+| +++++++|.+
T Consensus 143 ~~~~~~~---------~-~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 176 (186)
T 1mh1_A 143 QGLAMAK---------E-IGAVKYLECSALTQRG---LKTVFDEAIR 176 (186)
T ss_dssp HHHHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHH---------h-cCCcEEEEecCCCccC---HHHHHHHHHH
Confidence 0000000 0 0113889999999999 9999999865
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=1.1e-27 Score=177.24 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=90.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....+||+++|++|||||||+++|.++.+...+ ||.+.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-hHHhhcCCCcEE
Confidence 456789999999999999999999998886654 56554443 3555554 789999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 84 VYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
++|+|++++.+ +..+ ..|+..+... . +++|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 83 LICFDISRPET-LDSVLKKWKGEIQEF--C--PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHH--C--CCCCEEEEEEcchhhc
Confidence 99999999655 7666 3444444321 1 2499999999999974
No 90
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=6e-28 Score=181.39 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccccc-cccc--eeeEEEEecCc----cEEEEECCCchhhhhhhHHHhhhc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFESC-TSLK--ENVGNFTYEKK----NIKIVDLPGEDRLRNKFFDQYKSS 79 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~~~-~t~~--~~~~~~~~~~~----~~~i~D~~G~~~~~~~~~~~~~~~ 79 (211)
...+||+++|++|||||||+++|+++ .+...+ +|++ .....+.+++. .+.+|||||++.+.. .+..++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ 96 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKE-QISQYWNG 96 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHH-HHSTTCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHH-HHHHHHhh
Confidence 34689999999999999999999988 665444 5655 34555777753 799999999999988 68889999
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC-CCCH-HHHHHHHHHHHHHHhhhcccccc
Q psy4433 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL-AKSS-SVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+|++|+|+|++++.+ +.....|+..+.........++|+++|+||+|+.. .+.. .+....+.+.++
T Consensus 97 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~----------- 164 (208)
T 2yc2_C 97 VYYAILVFDVSSMES-FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT----------- 164 (208)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-----------
T ss_pred CcEEEEEEECCCHHH-HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-----------
Confidence 999999999999664 77888777777653211012499999999999976 3332 111222222111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeec-CCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLD-SASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~t-g~g~~~i~~l~~~i~~ 210 (211)
+++++|||++ |+| ++++++||.+
T Consensus 165 ---------------------------~~~~~~Sa~~~~~g---i~~l~~~i~~ 188 (208)
T 2yc2_C 165 ---------------------------LDFFDVSANPPGKD---ADAPFLSIAT 188 (208)
T ss_dssp ---------------------------CEEEECCC----------CHHHHHHHH
T ss_pred ---------------------------CEEEEeccCCCCcC---HHHHHHHHHH
Confidence 6889999999 999 9999999865
No 91
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=1.5e-27 Score=179.30 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=116.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee--EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCC
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV--GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~--~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
...+.+||+++|++|||||||+++|++..+...+ +|++... ..+.+++. .+.+|||||++.+.. .+..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 82 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-LGVAFYRGAD 82 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-SCCGGGTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-hHHHHHhCCc
Confidence 3456789999999999999999999998876544 5555443 34555554 789999999999887 6788889999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++|+|+|++++.+ +.....|+..+...... ...++|+++|+||+|+.......+....+...
T Consensus 83 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (207)
T 1vg8_A 83 CCVLVFDVTAPNT-FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---------------- 145 (207)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------
Confidence 9999999998654 66666666665432110 11238999999999997433222222222110
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| ++++++||.+
T Consensus 146 ---------------------~~~~~~~~~Sa~~g~g---i~~l~~~l~~ 171 (207)
T 1vg8_A 146 ---------------------KNNIPYFETSAKEAIN---VEQAFQTIAR 171 (207)
T ss_dssp ---------------------TTSCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------cCCceEEEEeCCCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999864
No 92
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=178.14 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=110.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceee-EEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENV-GNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~-~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++||+++|++|||||||+++|+++.+...+ ||++... ..+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-LRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-TGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-HHHhhcCCCCEEE
Confidence 45689999999999999999999998876655 5555444 33566664 789999999999887 6788889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +......|...+... . +++|+++|+||+|+....... +.+.+ +. ..... ....
T Consensus 102 ~v~d~~~~~s-~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~~~~~---~~~~~-~~---~~~v~----~~~~-- 164 (207)
T 2fv8_A 102 MCFSVDSPDS-LENIPEKWVPEVKHF-C--PNVPIILVANKKDLRSDEHVR---TELAR-MK---QEPVR----TDDG-- 164 (207)
T ss_dssp EEEETTCHHH-HHHHHHTHHHHHHHH-S--TTCCEEEEEECGGGGGCHHHH---HHHHH-TT---CCCCC----HHHH--
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHHh-C--CCCCEEEEEEchhhhccccch---hhhhh-cc---cCCCC----HHHH--
Confidence 9999998654 666644333333321 1 248999999999997543211 11111 00 00000 0000
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.. . .....+++|||++|+| +++++++|.+
T Consensus 165 -~~~~~---------~-~~~~~~~~~SA~~g~g---i~el~~~l~~ 196 (207)
T 2fv8_A 165 -RAMAV---------R-IQAYDYLECSAKTKEG---VREVFETATR 196 (207)
T ss_dssp -HHHHH---------H-TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -HHHHH---------h-cCCCEEEEeeCCCCCC---HHHHHHHHHH
Confidence 00000 0 0113789999999999 9999999875
No 93
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-27 Score=179.87 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=113.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccccee--eEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKEN--VGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~--~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+||+++|++|||||||+++|.++.+...+ +|++.. ...+.+++. .+.+|||||++.+.. ++..+++.+|++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~v 89 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-ITSAYYRGAVGA 89 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-CCGGGTTTCCEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh-hHHHHhccCCEE
Confidence 34589999999999999999999998876544 555543 445667764 889999999999988 688899999999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
|+|+|++++.+ +..+..|+..+.... ..++|+++|+||+|+...+... +....+.+..
T Consensus 90 ilV~D~~~~~s-~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------- 148 (223)
T 3cpj_B 90 LIVYDISKSSS-YENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN----------------- 148 (223)
T ss_dssp EEEEC-CCHHH-HHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-----------------
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHHHHc-----------------
Confidence 99999999655 777777777665421 2348999999999997654332 1111121111
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++++||++|+| ++++++||.+
T Consensus 149 ---------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 172 (223)
T 3cpj_B 149 ---------------------QLLFTETSALNSEN---VDKAFEELIN 172 (223)
T ss_dssp ---------------------TCEEEECCCC-CCC---HHHHHHHHHH
T ss_pred ---------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=1.3e-27 Score=181.29 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=113.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEe--cC---ccEEEEECCCchhhhhhhHHHhhhcCC
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTY--EK---KNIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~--~~---~~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
....+||+++|.+|||||||+++|+++.+...+ +|.+.......+ .+ ..+.+|||||++.+.. ++..++.++|
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 86 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-LKDVYYIGAS 86 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-CCHHHHTTCS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-HHHHHhhcCC
Confidence 456789999999999999999999988876554 566555544433 22 2699999999999887 6888899999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++|+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+....... .......
T Consensus 87 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~--------------- 145 (218)
T 4djt_A 87 GAILFFDVTSRIT-CQNLARWVKEFQAVV---GNEAPIVVCANKIDIKNRQKISKK--LVMEVLK--------------- 145 (218)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHH---CSSSCEEEEEECTTCC----CCHH--HHHHHTT---------------
T ss_pred EEEEEEeCCCHHH-HHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHH--HHHHHHH---------------
Confidence 9999999999654 666666666654321 223899999999999765332211 1111010
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| +++++++|.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~g---v~~l~~~l~~ 171 (218)
T 4djt_A 146 --------------------GKNYEYFEISAKTAHN---FGLPFLHLAR 171 (218)
T ss_dssp --------------------TCCCEEEEEBTTTTBT---TTHHHHHHHH
T ss_pred --------------------HcCCcEEEEecCCCCC---HHHHHHHHHH
Confidence 1226799999999999 9999999875
No 95
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.2e-27 Score=181.91 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=117.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEE--EEecCc--cEEEEECCCchhhhhhhHHHhhhcCC
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGN--FTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAK 81 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~--~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d 81 (211)
.....+||+++|.+|||||||+++|+.+.+...+ ++.+..... +.+++. .+.+|||||++.+.. ++..+++++|
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ 89 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-LRDGYYIQAQ 89 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-CCHHHHTTCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-HHHHHHhcCC
Confidence 3456789999999999999999997776665543 666555444 344443 899999999999988 6888999999
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|++++.+ +.....|+..+.... .++|+++|+||+|+.+.....+... +.+..
T Consensus 90 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~---------------- 147 (221)
T 3gj0_A 90 CAIIMFDVTSRVT-YKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV-FHRKK---------------- 147 (221)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCC-HHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHH-HHHHc----------------
Confidence 9999999999654 777777777776531 2489999999999976543221111 11111
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+++|||++|+| ++++++||.+
T Consensus 148 ----------------------~~~~~~~Sa~~~~g---i~~l~~~l~~ 171 (221)
T 3gj0_A 148 ----------------------NLQYYDISAKSNYN---FEKPFLWLAR 171 (221)
T ss_dssp ----------------------TCEEEECBGGGTBT---TTHHHHHHHH
T ss_pred ----------------------CCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 16889999999999 9999999864
No 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-27 Score=177.54 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=90.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....+||+++|++|||||||+++|+++.+...+ ||++.... .+.+++. .+.+|||||++.+.. ++..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-VRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-TGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-HHHhhccCCCEE
Confidence 345689999999999999999999998886654 56554443 3555554 789999999999887 678889999999
Q ss_pred EEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 84 VYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
|+|+|++++.+ +..+ ..|+..+... . .++|+++|+||+|+.+
T Consensus 104 ilv~D~~~~~s-~~~~~~~~~~~i~~~--~--~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 104 LICFDISRPET-LDSVLKKWKGEIQEF--C--PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHH--C--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHH-HHHHHHHHHHHHHHH--C--CCCCEEEEEechhhcc
Confidence 99999999655 7666 4454444321 1 2499999999999974
No 97
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.8e-26 Score=172.01 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--ccccccccccee--eEEEEecCc--cEEEEECCCchh-hhhhhHHHhhhcCC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFESCTSLKEN--VGNFTYEKK--NIKIVDLPGEDR-LRNKFFDQYKSSAK 81 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~~~~t~~~~--~~~~~~~~~--~~~i~D~~G~~~-~~~~~~~~~~~~~d 81 (211)
...+||+++|++|||||||+++|++. .+...+++++.. ...+.+++. .+.+|||+|+.. ++. +...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~-~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-LHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT-TGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh-HHHhhcccCC
Confidence 45689999999999999999999963 344444555443 344667766 667899999876 333 5566788899
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcccccccch
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
++++|||+++..+ +.....|+..+...... .++|+++|+||+|+...+..... ...+...
T Consensus 83 ~~i~v~dv~~~~s-~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~---------------- 143 (192)
T 2cjw_A 83 AYLIVYSITDRAS-FEKASELRIQLRRARQT--EDIPIILVGNKSDLVRXREVSVSEGRAXAVV---------------- 143 (192)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHHHTTT--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhhCC--CCCeEEEEEechhhhccccccHHHHHHHHHH----------------
Confidence 9999999999655 77777776655432111 24899999999999754433211 1111111
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| +++++++|.+
T Consensus 144 ----------------------~~~~~~e~SA~~g~~---v~~lf~~l~~ 168 (192)
T 2cjw_A 144 ----------------------FDXKFIETSAAVQHN---VKELFEGIVR 168 (192)
T ss_dssp ----------------------TTCEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ----------------------hCCceEEeccccCCC---HHHHHHHHHH
Confidence 115789999999999 9999999864
No 98
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=7.2e-27 Score=169.98 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=103.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccccc--ceeeEEEEecCccEEEEECCCchhhhh-----hhHHHhhh--cC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS--SA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~ 80 (211)
.++|+++|++|||||||+++|++..+ ...+|++ ......+.+++..+.+|||||++.+.. .+...++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 57999999999999999999998765 3334533 344556777777999999999987641 13455654 79
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+++++|+|+++.+ ....|+..+.. .++|+++|+||+|+...+......+.+.+.++
T Consensus 83 ~~~i~v~D~~~~~----~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------- 138 (165)
T 2wji_A 83 DLVVNIVDATALE----RNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-------------- 138 (165)
T ss_dssp SEEEEEEETTCHH----HHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------------
T ss_pred CEEEEEecCCchh----HhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------------
Confidence 9999999998743 23345444433 13899999999998644322111222322222
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++++|||++|+| +++++++|.+
T Consensus 139 ------------------------~~~~~~SA~~~~~---v~~l~~~l~~ 161 (165)
T 2wji_A 139 ------------------------VKVVPLSAAKKMG---IEELKKAISI 161 (165)
T ss_dssp ------------------------SCEEECBGGGTBS---HHHHHHHHHH
T ss_pred ------------------------CCEEEEEcCCCCC---HHHHHHHHHH
Confidence 5679999999999 9999999864
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=1.9e-26 Score=169.05 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=113.7
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccc--ceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSL--KENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
...+.++|+++|++|||||||+++|+++.+.... +++ ......+.+++..+.+|||||++.+.. ++..++..+|++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 82 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-MRARGAQVTDIV 82 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-SCCSSCCCCCEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-HHHHHHhhCCEE
Confidence 4567899999999999999999999998875443 333 344456778888999999999999887 577778889999
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 84 VYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
++|+|++++. ..+..+.+..+.. .++|+++|+||+|+.... .......+ .....
T Consensus 83 i~v~d~~~~~--~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~~-~~~~~~~~----~~~~~------------- 136 (178)
T 2lkc_A 83 ILVVAADDGV--MPQTVEAINHAKA------ANVPIIVAINKMDKPEAN-PDRVMQEL----MEYNL------------- 136 (178)
T ss_dssp EEEEETTCCC--CHHHHHHHHHHGG------GSCCEEEEEETTTSSCSC-HHHHHHHH----TTTTC-------------
T ss_pred EEEEECCCCC--cHHHHHHHHHHHh------CCCCEEEEEECccCCcCC-HHHHHHHH----HhcCc-------------
Confidence 9999998743 2333334433321 238999999999997642 22222111 10000
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ .......+++++|||++|+| ++++++||.+
T Consensus 137 ----~---------~~~~~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 167 (178)
T 2lkc_A 137 ----V---------PEEWGGDTIFCKLSAKTKEG---LDHLLEMILL 167 (178)
T ss_dssp ----C---------BTTTTSSEEEEECCSSSSHH---HHHHHHHHHH
T ss_pred ----C---------hhHcCCcccEEEEecCCCCC---HHHHHHHHHH
Confidence 0 00112237899999999999 9999999875
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=5.4e-26 Score=169.82 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=107.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE--EEec-C--ccEEEEECCCchhhhhhhH--HHhhhcC
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN--FTYE-K--KNIKIVDLPGEDRLRNKFF--DQYKSSA 80 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~-~--~~~~i~D~~G~~~~~~~~~--~~~~~~~ 80 (211)
..+.+||+++|++|||||||++++.+........+....... ..+. + ..+.+|||||++.+....| ..+++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 467899999999999999999988875433322222222222 2332 2 3899999999999877333 7889999
Q ss_pred CEEEEEEeCCCc-hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH-HHHhhhccccccc
Q psy4433 81 KGIVYVLDSSTV-QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL-NLVRRTKSNQLED 158 (211)
Q Consensus 81 d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 158 (211)
|++|+|+|+++. ...+.....|+...... ..++|+++|+||+|+.+..........+.... .......
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~------ 166 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG------ 166 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh------
Confidence 999999999985 12355566666655321 13499999999999975432211111111111 0000000
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....+.+++|||++ +| +++++++|.+
T Consensus 167 ---------------------~~~~~~~~~e~Sa~~-~~---v~~~f~~l~~ 193 (196)
T 3llu_A 167 ---------------------LEKLHLSFYLTSIYD-HS---IFEAFSKVVQ 193 (196)
T ss_dssp ---------------------CTTSCEEEEEECTTS-TH---HHHHHHHHHH
T ss_pred ---------------------hhcCCcceEEEEech-hh---HHHHHHHHHH
Confidence 001237899999999 99 9999998865
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.2e-26 Score=171.65 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--ccccc-ccccceeeEEEEe-------cCccEEEEECCCchhhhhhhHHHhhhcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS--KYFES-CTSLKENVGNFTY-------EKKNIKIVDLPGEDRLRNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~--~~~~~-~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 80 (211)
++||+++|++|||||||+++|++. .+... .+|++.......+ ....+.+|||+|++.+.. ++..+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~ 80 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS-THPHFMTQR 80 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT-TSHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH-hhHHHccCC
Confidence 589999999999999999999985 34433 4677766555433 233899999999999988 688889999
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
+++++|+|++++.+++.....|+..+.... .+.|+++|+||+|+.+.+..........+.+. .
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~-------- 143 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQRKACMSKITKELL-----N-------- 143 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT-----T--------
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhhHHHHHHHHHHHH-----H--------
Confidence 999999999987555777778877765421 23899999999999754322211111111110 0
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCC-CccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSA-SEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~-g~~~i~~l~~~i~~ 210 (211)
.. .+.....++++||++|. | +++|++.|.+
T Consensus 144 ----------~~-------~~~~~~~~~~~Sa~~~~~~---~~~l~~~i~~ 174 (184)
T 2zej_A 144 ----------KR-------GFPAIRDYHFVNATEESDA---LAKLRKTIIN 174 (184)
T ss_dssp ----------CT-------TSCEEEEEEECCTTSCCHH---HHHHHHHHHH
T ss_pred ----------hc-------CCcchhheEEEecccCchh---HHHHHHHHHH
Confidence 00 01112458999999996 9 9999988864
No 102
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=182.92 Aligned_cols=155 Identities=26% Similarity=0.310 Sum_probs=109.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccc--eeeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLK--ENVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~--~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..+||+++|++|||||||+++|+++.+...+ ++++ .....+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~d~~i 110 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGII 110 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC-CSCC--CCCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH-HHHHHhhcCCEEE
Confidence 4589999999999999999999988876544 4444 44555677764 799999999999887 6788889999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHH-HHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSV-VKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|++++.+ +.....|+..+.... ..++|+++|+||+|+.+.+.... ....+.+.
T Consensus 111 ~v~d~~~~~s-~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~------------------- 167 (199)
T 3l0i_B 111 VVYDVTDQES-FNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS------------------- 167 (199)
T ss_dssp ECC-CCCSHH-HHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-------------------
T ss_pred EEEECCCHHH-HHHHHHHHHHHHHhc---cCCCCEEEEEECccCCccccCCHHHHHHHHHH-------------------
Confidence 9999999665 888888777775432 23499999999999975543210 11111111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+++++|||++|+| ++++++||.+
T Consensus 168 -------------------~~~~~~~vSA~~g~g---v~~l~~~l~~ 192 (199)
T 3l0i_B 168 -------------------LGIPFLETSAKNATN---VEQSFMTMAA 192 (199)
T ss_dssp -------------------TTCCBCCCCC---HH---HHHHHHHHTT
T ss_pred -------------------cCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 125678899999999 9999999975
No 103
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=3.2e-25 Score=164.72 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=107.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEE-EEecCccEEEEECCC----------chhhhhhhHHHhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGN-FTYEKKNIKIVDLPG----------EDRLRNKFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~ 77 (211)
...+||+++|++|||||||+++|++.......++.+..... ....+..+.+||||| ++.+.. ++..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~~~ 99 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR-LVEDYF 99 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH-HHHHHH
Confidence 45689999999999999999999998754444444433222 222345899999999 556666 567777
Q ss_pred hcC---CEEEEEEeCCCchhh-HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcc
Q psy4433 78 SSA---KGIVYVLDSSTVQKT-LRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 78 ~~~---d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 153 (211)
+.+ +++++|+|+++.... ......++... ++|+++|+||+|+.+........+.+.+.+..
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~------ 164 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK------ 164 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS------
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhh------
Confidence 665 999999999874331 22222332221 38999999999998665554444444332220
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++|||++|+| ++++++||.+
T Consensus 165 ----------------------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 190 (195)
T 3pqc_A 165 ----------------------------YGEYTIIPTSSVTGEG---ISELLDLIST 190 (195)
T ss_dssp ----------------------------SCCSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------------cCCCceEEEecCCCCC---HHHHHHHHHH
Confidence 1125789999999999 9999999975
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=4.4e-25 Score=164.28 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCccEEEEECCC----------chhhhhhhHHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKKNIKIVDLPG----------EDRLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~ 75 (211)
...++|+++|++|||||||+++|+++.+...+ ++.+. ....+.+ +..+.+||||| ++.+.. ++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~ 98 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGR-MIET 98 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHH-HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHH-HHHH
Confidence 45789999999999999999999988753332 33322 2223344 34899999999 667776 6777
Q ss_pred hhhcC---CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhc
Q psy4433 76 YKSSA---KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 76 ~~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 152 (211)
+++.+ |++++|+|++++.+ .... .+...+.. .++|+++|+||+|+.+........+.+.+.+..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~-~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----- 165 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPS-NDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----- 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC-HHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----
T ss_pred HHhhhhcCCEEEEEEECCCCCC-HHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----
Confidence 77766 99999999988544 2221 11222221 238999999999998766554433444332220
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| ++++++||.+
T Consensus 166 -----------------------------~~~~~~~~~Sa~~~~g---v~~l~~~l~~ 191 (195)
T 1svi_A 166 -----------------------------DPEDELILFSSETKKG---KDEAWGAIKK 191 (195)
T ss_dssp -----------------------------CTTSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------------cCCCceEEEEccCCCC---HHHHHHHHHH
Confidence 1226889999999999 9999999875
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=7.3e-28 Score=180.95 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=112.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
.+.+||+++|++|||||||+++|+++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-LRPLSYPQTDVFL 106 (204)
Confidence 46799999999999999999999988876554 44443332 2444444 677999999999988 6888899999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
+|+|++++.+ +......|...+.... .++|+++|+||+|+.+.....+...... ....... .
T Consensus 107 lv~D~~~~~s-~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~v~~~------------~ 168 (204)
T 3th5_A 107 ICFSLVSPAS-FENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKK--LTPITYP------------Q 168 (204)
Confidence 9999998655 6666533333333211 1489999999999975543221111100 0000000 0
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... +.+.....++++|||++|+| +++++++|.+
T Consensus 169 ~~~----------~~~~~~~~~~~~vSA~~g~g---i~~l~~~l~~ 201 (204)
T 3th5_A 169 GLA----------MAKEIGAVKYLECSALTQRG---LKTVFDEAIR 201 (204)
Confidence 000 00001113789999999999 9999999875
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=8.6e-25 Score=167.06 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=106.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-ccc--ccceeeEEEEecCccEEEEECCCc------hh----hhhhhHHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFE-SCT--SLKENVGNFTYEKKNIKIVDLPGE------DR----LRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~~~~ 75 (211)
...++|+++|++|||||||+++|+++.+.. ..+ |.......+.+++..+.+|||||+ +. +.. +..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~--~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT--ITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH--HHH
Confidence 457899999999999999999999887642 222 334455556667779999999999 33 222 344
Q ss_pred hhhcCCEEEEEEeCCCchhh-HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH-HHHHHHHHHHHhhhcc
Q psy4433 76 YKSSAKGIVYVLDSSTVQKT-LRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV-KTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~ 153 (211)
++..+|++++|+|++++.+. ......++..+... . .++|+++|+||+|+......... ...+.+....
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~------ 174 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--F--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN------ 174 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH------
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--h--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh------
Confidence 56778999999999985441 12233444444332 1 23899999999999866543322 1122211110
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.+++|||++|+| +++++++|.+
T Consensus 175 ---------------------------~~~~~~~~~~SA~~g~g---i~~l~~~l~~ 201 (228)
T 2qu8_A 175 ---------------------------VKNPIKFSSFSTLTGVG---VEQAKITACE 201 (228)
T ss_dssp ---------------------------CCSCEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ---------------------------cCCCceEEEEecccCCC---HHHHHHHHHH
Confidence 01126889999999999 9999999875
No 107
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=8.6e-26 Score=175.54 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCccEEEEECCCchhhhh---------hhHHHhh--
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK-- 77 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~-- 77 (211)
.+|+++|++|||||||+|+|++... ...+|+++ .....+.+++..+.+|||||+..+.. .+...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 5899999999999999999998764 34445444 45566788888999999999976653 1455566
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++|++++|+|++++++ ...+...+ .. .++|+++|+||+|+............+.+.++
T Consensus 82 ~~~d~vi~VvDas~~~~----~~~l~~~l-~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLER----HLYLTSQL-FE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHHH----HHHHHHHH-TT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-----------
T ss_pred CCCCEEEEEeeCCCchh----HHHHHHHH-HH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-----------
Confidence 78999999999988443 22222222 22 23899999999999765443322333443333
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhhC
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVTL 211 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~l 211 (211)
++++++||++|+| +++++++|.++
T Consensus 141 ---------------------------~~vi~~SA~~g~g---i~el~~~i~~~ 164 (256)
T 3iby_A 141 ---------------------------CSVIPIQAHKNIG---IPALQQSLLHC 164 (256)
T ss_dssp ---------------------------SCEEECBGGGTBS---HHHHHHHHHTC
T ss_pred ---------------------------CCEEEEECCCCCC---HHHHHHHHHhh
Confidence 6789999999999 99999999763
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.3e-25 Score=166.24 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCccEEEEECCCchhhhh-----hhHHHhhh--
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYKS-- 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~-- 78 (211)
.+.++|+++|++|||||||+++|++..+ ...+|+++ .....+.+++..+.+|||||++.+.. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 3568999999999999999999998664 33345443 44556777778999999999987631 24555664
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.++++++|+|+++ +.....|+..+.. .+.|+++|+||+|+............+.+.++
T Consensus 85 ~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------ 142 (188)
T 2wjg_A 85 KPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEKILG------------ 142 (188)
T ss_dssp CCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT------------
T ss_pred CCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHHHHhC------------
Confidence 4999999999976 3444555555543 23899999999999654332212222332222
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 143 --------------------------~~~~~~Sa~~~~~---v~~l~~~i~~ 165 (188)
T 2wjg_A 143 --------------------------VKVVPLSAAKKMG---IEELKKAISI 165 (188)
T ss_dssp --------------------------SCEEECBGGGTBS---HHHHHHHHHH
T ss_pred --------------------------CCeEEEEecCCCC---HHHHHHHHHH
Confidence 5779999999999 9999999865
No 109
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=8.3e-25 Score=166.24 Aligned_cols=162 Identities=16% Similarity=0.221 Sum_probs=107.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccccceeeEEEEe---cCccEEEEECCCc----------hhhhhhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FESCTSLKENVGNFTY---EKKNIKIVDLPGE----------DRLRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~----------~~~~~~~ 72 (211)
...++|+++|.+|||||||+|+|++... ....+.+........+ ++..+.+|||||+ +.+.. +
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ-L 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH-H
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH-H
Confidence 4578999999999999999999998862 2333333333333333 3459999999995 44444 5
Q ss_pred HHHhhhc---CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy4433 73 FDQYKSS---AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 73 ~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
...+++. +|++++|+|+++... .....+...+.. .++|+++|+||+|+..........+.+.+.+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT---ELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC---HHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC---HHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 6666665 778999999987433 222223333332 23899999999999865544433444443333210
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
... .....++++|||++|+| +++++++|.+
T Consensus 178 ~~~----------------------------~~~~~~~~~~SA~~g~g---v~~l~~~l~~ 207 (223)
T 4dhe_A 178 DAG----------------------------YAGKLTVQLFSALKRTG---LDDAHALIES 207 (223)
T ss_dssp HHT----------------------------CCSCEEEEEEBTTTTBS---HHHHHHHHHH
T ss_pred hcc----------------------------cCCCCeEEEeecCCCcC---HHHHHHHHHH
Confidence 000 01337899999999999 9999999975
No 110
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.1e-25 Score=174.64 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-ccccccccceeeEEEEec-CccEEEEECCCchhhhh-----hhHHHhhh--cCC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK-YFESCTSLKENVGNFTYE-KKNIKIVDLPGEDRLRN-----KFFDQYKS--SAK 81 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-----~~~~~~~~--~~d 81 (211)
.++|+++|++|||||||+|+|++.. +...+|.++.......++ +..+.+|||||++.+.. .+...|+. ++|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 5799999999999999999999865 455566444433333333 66899999999987641 24556665 599
Q ss_pred EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchh
Q psy4433 82 GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTND 161 (211)
Q Consensus 82 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (211)
++++|+|+++.++ ...++..+.. .++|+++|+||+|+............+.+.++
T Consensus 83 ~vi~V~D~t~~e~----~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------------- 137 (272)
T 3b1v_A 83 SILNVVDATNLER----NLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------------- 137 (272)
T ss_dssp EEEEEEEGGGHHH----HHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred EEEEEecCCchHh----HHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC---------------
Confidence 9999999987443 2334344432 23899999999999654332222233333333
Q ss_pred hcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 162 VAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+++++|||++|+| +++++++|.+
T Consensus 138 -----------------------~~vi~~SA~~g~g---i~el~~~i~~ 160 (272)
T 3b1v_A 138 -----------------------VPVVATSALKQTG---VDQVVKKAAH 160 (272)
T ss_dssp -----------------------SCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------CCEEEEEccCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999875
No 111
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.5e-25 Score=175.88 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccc--cceeeEEEEecCccEEEEECCCchhhhh---------hhHHHhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTS--LKENVGNFTYEKKNIKIVDLPGEDRLRN---------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 77 (211)
++++|+++|++|||||||+|+|++..+ ...+|+ .......+.+++..+.+|||||+..+.. .+...++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998775 233443 3345556777778999999999876551 1233343
Q ss_pred --hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccc
Q psy4433 78 --SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQ 155 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (211)
+.+|++++|+|+++.+. . ..+...+.. .++|+++|+||+|+..........+.+.+.++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~-~---~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------- 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLER-N---LYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------- 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHH-H---HHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT---------
T ss_pred hhcCCCEEEEEecCCChHH-H---HHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHHhcC---------
Confidence 68999999999987443 2 222222221 12899999999999755443222333443333
Q ss_pred cccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 156 LEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 143 -----------------------------~~~i~~SA~~g~g---i~el~~~i~~ 165 (274)
T 3i8s_A 143 -----------------------------CPVIPLVSTRGRG---IEALKLAIDR 165 (274)
T ss_dssp -----------------------------SCEEECCCGGGHH---HHHHHHHHHT
T ss_pred -----------------------------CCEEEEEcCCCCC---HHHHHHHHHH
Confidence 6789999999999 9999999975
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=4.9e-25 Score=163.15 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEEecCccEEEEECCC-----------chhhhhhhHHHhhhc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFTYEKKNIKIVDLPG-----------EDRLRNKFFDQYKSS 79 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~~ 79 (211)
+||+++|++|||||||+++|+++.+...+ |+++.....+.++ .+.+||||| ++.+.. .+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKD-EIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHH-HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHH-HHHHHHHh
Confidence 68999999999999999999998875433 5555555555555 799999999 566666 56667665
Q ss_pred -CCEEEEEEeCCCchhhHHHHHHHHHH---------HHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHh
Q psy4433 80 -AKGIVYVLDSSTVQKTLRDVAESLYV---------ILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVR 149 (211)
Q Consensus 80 -~d~ii~v~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 149 (211)
++++++|+++.+..+ +......|.. +... ....++|+++|+||+|+.... .+..+.+.+.++. +
T Consensus 79 ~~~~~~~v~~v~d~~s-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-~ 152 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKA-APEIIKRWEKRGEIPIDVEFYQF--LRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEV-P 152 (190)
T ss_dssp HGGGCCEEEEEEETTH-HHHHHHHHHHTTCCCHHHHHHHH--HHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTC-C
T ss_pred hhccCCEEEEEEcchh-hhhHHHhhhccCccHHHHHHHHH--HHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhh-h
Confidence 555555555444333 4443222221 1111 111248999999999998654 2223333333320 0
Q ss_pred hhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 150 RTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. . .+...+++|||++|+| ++++++||.+
T Consensus 153 ~----------------------------~--~~~~~~~~~Sa~~~~~---v~~l~~~l~~ 180 (190)
T 2cxx_A 153 L----------------------------S--EIDKVFIPISAKFGDN---IERLKNRIFE 180 (190)
T ss_dssp G----------------------------G--GHHHHEEECCTTTCTT---HHHHHHHHHH
T ss_pred h----------------------------h--ccCCcEEEEecCCCCC---HHHHHHHHHH
Confidence 0 0 0124679999999999 9999999875
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=2.6e-25 Score=173.00 Aligned_cols=151 Identities=25% Similarity=0.333 Sum_probs=108.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccccce--eeEEEEecCccEEEEECCCchhhhh-----hhHHHhh--h
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLKE--NVGNFTYEKKNIKIVDLPGEDRLRN-----KFFDQYK--S 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~--~ 78 (211)
.+.++|+++|++|||||||+|+|++..+ ...+|.++. ....+..++..+.+|||||+..+.. .+...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 3568999999999999999999998775 344454433 4445666677999999999976643 1234454 4
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.++. ..++..+.. .++|+++|+||+|+...+........+.+.++
T Consensus 83 ~~d~ii~V~D~t~~~~~----~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg------------ 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS----LYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG------------ 140 (258)
T ss_dssp CCSEEEEEEETTSCHHH----HHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC------------
T ss_pred CCCEEEEEeCCCchhhH----HHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHHHcC------------
Confidence 79999999999886542 234444432 23899999999999654332222233333333
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 141 --------------------------~~vi~~SA~~g~g---i~el~~~i~~ 163 (258)
T 3a1s_A 141 --------------------------IPVVFTSSVTGEG---LEELKEKIVE 163 (258)
T ss_dssp --------------------------SCEEECCTTTCTT---HHHHHHHHHH
T ss_pred --------------------------CCEEEEEeeCCcC---HHHHHHHHHH
Confidence 6789999999999 9999999864
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=5.7e-25 Score=158.56 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc--cccccc--ceeeEEEEecCccEEEEECCCchh-------hhhhhHHHhhhcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSL--KENVGNFTYEKKNIKIVDLPGEDR-------LRNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 80 (211)
+||+++|++|||||||++++.++.+. ...+++ ......+.+++..+.+|||||+.. +.. .+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQE-KVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHH-HHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHH-HHHHHHHhC
Confidence 58999999999999999999987743 333333 334455677777999999999876 344 466678899
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccch
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTN 160 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (211)
|++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+... .+....
T Consensus 81 ~~~i~v~d~~~~~~~~---~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~----------~~~~~~----------- 131 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQA---DYEVAEYLRR-----KGKPVILVATKVDDPKHEL----------YLGPLY----------- 131 (161)
T ss_dssp SEEEEEEESSSCCCHH---HHHHHHHHHH-----HTCCEEEEEECCCSGGGGG----------GCGGGG-----------
T ss_pred CEEEEEEECCCcccHh---HHHHHHHHHh-----cCCCEEEEEECcccccchH----------hHHHHH-----------
Confidence 9999999998853322 2333333322 2289999999999975410 000000
Q ss_pred hhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 161 DVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. -.++++|||++|+| +++++++|.+
T Consensus 132 -------------------~~~-~~~~~~~Sa~~~~g---v~~l~~~l~~ 158 (161)
T 2dyk_A 132 -------------------GLG-FGDPIPTSSEHARG---LEELLEAIWE 158 (161)
T ss_dssp -------------------GGS-SCSCEECBTTTTBS---HHHHHHHHHH
T ss_pred -------------------hCC-CCCeEEEecccCCC---hHHHHHHHHH
Confidence 000 02578999999999 9999999875
No 115
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=1.1e-24 Score=174.90 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=113.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeE-EEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVG-NFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~-~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~i 83 (211)
....++|+++|.+|||||||+++++++.+...+ +|++.... .+.+++. .+.+|||||++.+.. .+..+++++|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-LRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-TGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-HHHHhccCCCEE
Confidence 355689999999999999999999988876555 45544333 3566666 566999999999988 688889999999
Q ss_pred EEEEeCCCchhhHHHHHH-HHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhh
Q psy4433 84 VYVLDSSTVQKTLRDVAE-SLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162 (211)
Q Consensus 84 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (211)
++|+|++++.+ +..... |+..+.... .++|+++|+||+|+.......+ .+.. .. ... ....
T Consensus 231 i~v~d~~~~~s-~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~-~~---~~~------v~~~ 292 (332)
T 2wkq_A 231 LICFSLVSPAS-FHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE-KK---LTP------ITYP 292 (332)
T ss_dssp EEEEETTCHHH-HHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH-TT---CCC------CCHH
T ss_pred EEEEeCCCHHH-HHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc-cc---ccc------ccHH
Confidence 99999999665 666653 433333211 1499999999999975422111 1100 00 000 0000
Q ss_pred cccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 163 AANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+... ....++++|||++|+| +++++++|.+
T Consensus 293 -~~~~~~~~----------~~~~~~~~~Sa~~~~g---i~~l~~~l~~ 326 (332)
T 2wkq_A 293 -QGLAMAKE----------IGAVKYLECSALTQRG---LKTVFDEAIR 326 (332)
T ss_dssp -HHHHHHHH----------TTCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -HHHHHHHH----------cCCcEEEEecCCCCcC---HHHHHHHHHH
Confidence 00000000 0113789999999999 9999999865
No 116
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=2.7e-24 Score=171.36 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--cccccceeeEEEEecCc-cEEEEECCCchhh-----hhhhHHHhhhc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YFE--SCTSLKENVGNFTYEKK-NIKIVDLPGEDRL-----RNKFFDQYKSS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~-----~~~~~~~~~~~ 79 (211)
..+||+++|++|||||||++++.++. +.. ..+|++.....+.+.+. .+.+|||||++.+ .. .+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTK-QKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTT-THHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhh-HHHHHhcc
Confidence 45899999999999999999999873 322 23677777777777444 8999999999988 45 67888899
Q ss_pred CCEEEEEEeCCCchhhHHHHHHH---HHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 80 AKGIVYVLDSSTVQKTLRDVAES---LYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+|++|+|+|++++.+ +.....| +..+... .+++|+++|+||+|+.+
T Consensus 81 ad~vi~V~D~t~~~s-~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 81 VQVLIHVFDVESTEV-LKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp CSEEEEEEETTCSCH-HHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSC
T ss_pred CCEEEEEEECCChhh-HHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccc
Confidence 999999999998654 6655444 3333221 13499999999999976
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=4.7e-25 Score=161.54 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCccEEEEECCCchhhhhh-------hHHHhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
++..||+++|++|||||||+++|++..+ ...++++ ......+.+++..+.+|||||+..+... ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999998764 2333333 3344567788878999999998542110 012357
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ +. ...|+..+.... ..++|+++|+||+|+.+.... . +
T Consensus 82 ~~ad~~i~v~D~~~~~s-~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~----------~---------~-- 135 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDA-VD-PAEIWPEFIARL---PAKLPITVVRNKADITGETLG----------M---------S-- 135 (172)
T ss_dssp HTCSEEEEEEETTTCCC-CS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCCE----------E---------E--
T ss_pred HhCCEEEEEEECCCCCC-HH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchhh----------h---------h--
Confidence 88999999999988654 32 234544443321 124899999999998532100 0 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
. ....++++|||++|+| +++++++|.+
T Consensus 136 ----------------------~-~~~~~~~~~SA~~g~g---v~~l~~~l~~ 162 (172)
T 2gj8_A 136 ----------------------E-VNGHALIRLSARTGEG---VDVLRNHLKQ 162 (172)
T ss_dssp ----------------------E-ETTEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------h-ccCCceEEEeCCCCCC---HHHHHHHHHH
Confidence 0 0126889999999999 9999999875
No 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=2.1e-24 Score=171.43 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc----cccccceeeEEEEecCccEEEEECCCchhhhhh--hHHHhhhcCCEEEEE
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYSKYFE----SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK--FFDQYKSSAKGIVYV 86 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~d~ii~v 86 (211)
||+++|++|||||||++++.++.+.. ..||++.....+. ....+.+|||||+++|+.. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988654433 2377777766542 1238999999999999631 257899999999999
Q ss_pred EeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccc
Q psy4433 87 LDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQ 166 (211)
Q Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (211)
+|+++. +.+...+|..++.......+++|+++|+||+|+.......+....+..+... .
T Consensus 80 ~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-------~----------- 138 (331)
T 3r7w_B 80 IDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-------E----------- 138 (331)
T ss_dssp CCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-------T-----------
T ss_pred EECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-------H-----------
Confidence 999984 3344445444332100012349999999999997554332222222221110 0
Q ss_pred cccCCCCCCeeecCC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 167 TFLGNPDKDFEFSDL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++.. .+ ..++.|+++||++ .+ |.+.+..|.+
T Consensus 139 -la~~--------~~~~~~i~f~eTSAkd-~n---V~eAFs~iv~ 170 (331)
T 3r7w_B 139 -LLEL--------GLDGVQVSFYLTSIFD-HS---IYEAFSRIVQ 170 (331)
T ss_dssp -TSSS--------SCSCCCEEEECCCSSS-SH---HHHHHHHHHT
T ss_pred -HHhh--------cccccCceEEEeccCC-Cc---HHHHHHHHHH
Confidence 0000 00 1348999999998 57 9999977653
No 119
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=1.6e-23 Score=156.68 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=113.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIV 84 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii 84 (211)
..++|+++|++|||||||+++|++..+...+ ||++. ..+.+.+++. .+.+||++|++.++. .+..+++.+++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~-~~~~~~~~~~~~i 82 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR-ITSAYYRGAVGAL 82 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC-CCHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh-hhHHHHhcCCEEE
Confidence 3579999999999999999999998775444 55443 4456778776 678899999998887 6777888999999
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhc
Q psy4433 85 YVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVA 163 (211)
Q Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (211)
+|+|+++..+ +.....|+..+... ...+.|+++|+||+|+.+.+... .....+...
T Consensus 83 ~v~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~------------------- 139 (199)
T 2f9l_A 83 LVYDIAKHLT-YENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK------------------- 139 (199)
T ss_dssp EEEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------------
T ss_pred EEEECcCHHH-HHHHHHHHHHHHHh---cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-------------------
Confidence 9999988554 66666666554321 11248999999999997654322 111122111
Q ss_pred ccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 164 ANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++||+++.| +++++++|.+
T Consensus 140 -------------------~~~~~~d~Sal~~~~---i~~l~~~l~~ 164 (199)
T 2f9l_A 140 -------------------NNLSFIETSALDSTN---VEEAFKNILT 164 (199)
T ss_dssp -------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred -------------------cCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 126788899999999 9999999864
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.4e-23 Score=167.31 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=108.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc--cc--ccceeeEEEEec-CccEEEEECCCchhh----------hhhh
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES--CT--SLKENVGNFTYE-KKNIKIVDLPGEDRL----------RNKF 72 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~----------~~~~ 72 (211)
..+...|+++|.+|||||||+|+|++.++... .+ |.......++.+ +..+.+|||||+... .. .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~-~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE-I 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH-H
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH-H
Confidence 34556899999999999999999999876432 22 222334445666 669999999998443 24 4
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc-CCCCHHHHHHHHHHHHHHHhhh
Q psy4433 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT-LAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
+..+++.+|++++|+|+++..+ ......|+. .+.. .++|+++|+||+|+. +........+.+.+.+.
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~-~~~~~~~~~-~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~----- 153 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWR-PRDEEIYQN-FIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP----- 153 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSC-HHHHHHHHH-HTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-----
T ss_pred HHHHhhcCCEEEEEEeCCCCCC-chhHHHHHH-HHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-----
Confidence 5667888999999999988544 333333333 3322 238999999999997 44333333333332211
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 154 -------------------------------~~~~i~~vSA~~g~g---v~~L~~~l~~ 178 (308)
T 3iev_A 154 -------------------------------ELTEIVPISALKGAN---LDELVKTILK 178 (308)
T ss_dssp -------------------------------TCCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEeCCCCCC---HHHHHHHHHH
Confidence 125689999999999 9999999865
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=4.9e-24 Score=167.04 Aligned_cols=151 Identities=25% Similarity=0.291 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccccc--eeeEEEEecCccEEEEECCCchhhhhh-----hHHHhh--hc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-----FFDQYK--SS 79 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~--~~ 79 (211)
+.++|+++|++|||||||+|+|++..+ ...+|+++ .....+.+++..+.+|||||+..+... ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 357999999999999999999998776 23344444 344557777889999999998765431 244455 57
Q ss_pred CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy4433 80 AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 80 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+|++++|+|+++.. ....++..+... .. +|+++|+||+|+............+.+.++
T Consensus 82 ~d~vi~v~D~~~~~----~~~~~~~~~~~~---~~--~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg------------- 139 (271)
T 3k53_A 82 ADVIVDIVDSTCLM----RNLFLTLELFEM---EV--KNIILVLNKFDLLKKKGAKIDIKKMRKELG------------- 139 (271)
T ss_dssp CSEEEEEEEGGGHH----HHHHHHHHHHHT---TC--CSEEEEEECHHHHHHHTCCCCHHHHHHHHS-------------
T ss_pred CcEEEEEecCCcch----hhHHHHHHHHhc---CC--CCEEEEEEChhcCcccccHHHHHHHHHHcC-------------
Confidence 99999999998743 333444444432 11 899999999998643322212333433333
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++++++||++|+| +++++++|.+
T Consensus 140 -------------------------~~~~~~Sa~~g~g---i~~l~~~i~~ 162 (271)
T 3k53_A 140 -------------------------VPVIPTNAKKGEG---VEELKRMIAL 162 (271)
T ss_dssp -------------------------SCEEECBGGGTBT---HHHHHHHHHH
T ss_pred -------------------------CcEEEEEeCCCCC---HHHHHHHHHH
Confidence 5789999999999 9999999864
No 122
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.3e-25 Score=173.13 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCC---------CCCHHHHHHHHHc---Ccccccc-ccc-ceee--EE--------------EEecCc--c
Q psy4433 9 SSQKVVLLSGLS---------LSGKTLLFARLVY---SKYFESC-TSL-KENV--GN--------------FTYEKK--N 56 (211)
Q Consensus 9 ~~~~ki~i~G~~---------~~GKSsli~~l~~---~~~~~~~-~t~-~~~~--~~--------------~~~~~~--~ 56 (211)
...+||+++|.+ |||||||+++|++ ..+...+ +|+ +... .. ..+++. .
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456899999999 9999999999998 4443333 333 2111 11 112233 7
Q ss_pred EEEEE-----------------------CCCchhhhhhhHHHhhh---------------------cCCEEEEEEeCCCc
Q psy4433 57 IKIVD-----------------------LPGEDRLRNKFFDQYKS---------------------SAKGIVYVLDSSTV 92 (211)
Q Consensus 57 ~~i~D-----------------------~~G~~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 92 (211)
+.+|| ++|++++.. ++..+++ ++|++|+|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLAS-AEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEEC-TTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhh-hhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 89999 445555544 4444555 69999999999986
Q ss_pred --hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy4433 93 --QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
.+ +..+..|+..+...... .++|+++|+||+|+...+..+ ...+... .
T Consensus 176 ~~~s-~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~v~----~~~~~~~----~------------------- 225 (255)
T 3c5h_A 176 MNRN-FDDQLKFVSNLYNQLAK--TKKPIVVVLTKCDEGVERYIR----DAHTFAL----S------------------- 225 (255)
T ss_dssp ---C-HHHHHHHHHHHHHHHHH--TTCCEEEEEECGGGBCHHHHH----HHHHHHH----T-------------------
T ss_pred chhh-HHHHHHHHHHHHHHhcc--CCCCEEEEEEcccccccHHHH----HHHHHHH----h-------------------
Confidence 44 88888887776543111 238999999999996443221 1111110 0
Q ss_pred CCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 171 NPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+.+++|||++|+| +++++++|.+
T Consensus 226 -----------~~~~~~~e~SAk~g~g---v~elf~~l~~ 251 (255)
T 3c5h_A 226 -----------KKNLQVVETSARSNVN---VDLAFSTLVQ 251 (255)
T ss_dssp -----------SSSCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------cCCCeEEEEECCCCCC---HHHHHHHHHH
Confidence 0125789999999999 9999999864
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=7.8e-23 Score=152.12 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=113.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEecCc--cEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTYEKK--NIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.++|+++|++|||||||++++++..+...+ ||++. ..+.+.+++. .+.+||++|++++.. ++..+++.++++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~-~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA-ITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC-CCHHHHTTCCEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh-hhHHHhhcCCEEEE
Confidence 479999999999999999999998875443 56554 3455777776 456799999988877 67788888999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHH-HHHHHHHHHHHHHhhhcccccccchhhcc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSS-VVKTLLQKELNLVRRTKSNQLEDTNDVAA 164 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
|+|.++..+ +.....|+..+... ...+.|+++++||+|+.+..... .....+...
T Consensus 108 v~d~~~~~s-~~~~~~~~~~~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------------- 163 (191)
T 1oix_A 108 VYDIAKHLT-YENVERWLKELRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------------- 163 (191)
T ss_dssp EEETTCHHH-HHTHHHHHHHHHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH--------------------
T ss_pred EEECcCHHH-HHHHHHHHHHHHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHH--------------------
Confidence 999988544 65655565544321 11248999999999997644321 122222211
Q ss_pred cccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 165 NQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.++++||++++| +++++++|.+
T Consensus 164 ------------------~~~~~ld~Sald~~~---v~~l~~~l~~ 188 (191)
T 1oix_A 164 ------------------NGLSFIETSALDSTN---VEAAFQTILT 188 (191)
T ss_dssp ------------------TTCEEEECCTTTCTT---HHHHHHHHHH
T ss_pred ------------------cCCEEEEEeCCCCCC---HHHHHHHHHH
Confidence 126788899999999 9999999864
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=3.1e-23 Score=164.60 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=103.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc--ccc-cccee-eEEEEecCccEEEEECCCchh--------hhhhhHHHhhh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SLKEN-VGNFTYEKKNIKIVDLPGEDR--------LRNKFFDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~~~~-~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~ 78 (211)
..+|+++|.+|||||||+|+|++.++.. ..| |+... ...+..++..+.+|||||+.. +.. ....+++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~-~~~~~l~ 85 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQ-EVYEALA 85 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHH-HHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHH-HHHHHHh
Confidence 4579999999999999999999987642 223 22222 233455666999999999865 444 4566788
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|++++.+ ....++...+... . .++|+++|+||+|+.+... ...+. +... .
T Consensus 86 ~ad~il~VvD~~~~~~---~~~~~i~~~l~~~-~--~~~p~ilV~NK~Dl~~~~~--~~~~~----~~~~----~----- 144 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPT---PEDELVARALKPL-V--GKVPILLVGNKLDAAKYPE--EAMKA----YHEL----L----- 144 (301)
T ss_dssp SCSEEEEEEETTSCCC---HHHHHHHHHHGGG-T--TTSCEEEEEECGGGCSSHH--HHHHH----HHHT----S-----
T ss_pred cCCEEEEEEECCCCCC---hHHHHHHHHHHhh-c--CCCCEEEEEECcccCCchH--HHHHH----HHHh----c-----
Confidence 9999999999987543 2234444444332 1 2389999999999975432 01111 1111 0
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++++++|.+
T Consensus 145 ------------------------~~~~~~~iSA~~g~g---v~~l~~~l~~ 169 (301)
T 1wf3_A 145 ------------------------PEAEPRMLSALDERQ---VAELKADLLA 169 (301)
T ss_dssp ------------------------TTSEEEECCTTCHHH---HHHHHHHHHT
T ss_pred ------------------------CcCcEEEEeCCCCCC---HHHHHHHHHH
Confidence 014679999999999 9999999865
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.4e-23 Score=153.25 Aligned_cols=140 Identities=28% Similarity=0.426 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhc----CCEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSS----AKGI 83 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~d~i 83 (211)
..+.++|+++|++|||||||+++|++..+....++..+... ..+.+..+.+|||||+..+.. .+..++.. +|++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 122 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGL 122 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSC-CHHHHHHHHGGGEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHH-HHHHHHHhhcccCCEE
Confidence 35678999999999999999999998876442221111111 122455899999999988876 46666655 8999
Q ss_pred EEEEeCC-CchhhHHHHHHHHHHHHcCcCc-CCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhh
Q psy4433 84 VYVLDSS-TVQKTLRDVAESLYVILADPQV-QSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRR 150 (211)
Q Consensus 84 i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 150 (211)
++|+|++ +.. .+.....|+..++..... ...++|+++|+||+|+.+.....++.+.+.+++..+..
T Consensus 123 i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~ 190 (193)
T 2ged_A 123 IFMVDSTVDPK-KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190 (193)
T ss_dssp EEEEETTCCHH-HHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCch-hHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999998 644 477888888777653221 12349999999999999988888888888877776543
No 126
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=7.4e-23 Score=168.77 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=107.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc----cccc--------------e-----eeEEEEecCccEEEEECC
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC----TSLK--------------E-----NVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~ 63 (211)
..++.++|+++|++|+|||||+++|++....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999974332111 0000 0 000000111478999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy4433 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||+.|.. .+..++..+|++++|+|+++... +.+..+++..+... .. .|+++|+||+|+.+........+.+.+
T Consensus 84 Gh~~~~~-~~~~~~~~~D~~ilVvda~~~~~-~~qt~~~~~~~~~~---~~--~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 84 GHEVLMA-TMLSGAALMDGAILVVAANEPFP-QPQTREHFVALGII---GV--KNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp CCGGGHH-HHHHHHTTCSEEEEEEETTSCSS-CHHHHHHHHHHHHH---TC--CCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHhhCCEEEEEEECCCCCC-cHHHHHHHHHHHHc---CC--CCEEEEEECccccchHHHHHHHHHHHH
Confidence 9999998 46777888999999999988542 45555555443321 11 589999999999765433333333322
Q ss_pred HHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 144 ELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 157 ~l~~-----------~---------------------~~~~~~ii~vSA~~g~g---i~~L~~~l~~ 188 (403)
T 3sjy_A 157 FTKG-----------T---------------------WAENVPIIPVSALHKIN---IDSLIEGIEE 188 (403)
T ss_dssp HHTT-----------S---------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHh-----------h---------------------CCCCCEEEEEECCCCcC---hHHHHHHHHH
Confidence 2210 0 01236889999999999 9999999875
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=5.4e-23 Score=171.18 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCccEEEEECCCc----------hhhhhhhHHH
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGE----------DRLRNKFFDQ 75 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 75 (211)
..+||+++|.+|||||||+|+|++... ...+++++ .....+.+++..+.+|||||+ +.+.......
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 458999999999999999999998775 33344333 334467788889999999998 5555421224
Q ss_pred hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhcc
Q psy4433 76 YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTKS 153 (211)
Q Consensus 76 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~ 153 (211)
+++.+|++++|+|++++.+ .+. ..++..+.. .++|+++|+||+|+.+.... .+..+.+.+.+..
T Consensus 254 ~~~~ad~~llv~D~~~~~s-~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~------ 319 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGII-EQD-KRIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF------ 319 (436)
T ss_dssp HHHHCSEEEEEEETTTCCC-HHH-HHHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG------
T ss_pred HHHhCCEEEEEEcCCcCCc-HHH-HHHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc------
Confidence 6788999999999998654 322 344444332 23899999999999876542 2233333332221
Q ss_pred cccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 154 NQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|+| ++++++++.+
T Consensus 320 ----------------------------~~~~~~~~~SA~tg~~---v~~l~~~i~~ 345 (436)
T 2hjg_A 320 ----------------------------LDYAPILFMSALTKKR---IHTLMPAIIK 345 (436)
T ss_dssp ----------------------------GTTSCEEECCTTTCTT---GGGHHHHHHH
T ss_pred ----------------------------CCCCCEEEEecccCCC---HHHHHHHHHH
Confidence 0115789999999999 9999988764
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=1.8e-23 Score=175.03 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCccEEEEECCCchhhhhh-------hHHHhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|.+|||||||+|+|++... ....+++ ......+.+++..+.+|||||+..+... ....++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998753 3444433 3344567888889999999999776541 123367
Q ss_pred hcCCEEEEEEeCCCchhhHH---HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLR---DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
+.+|++++|+|++++.+ .. ....++..+ . ++|+++|+||+|+.+...... +.+.+. .
T Consensus 311 ~~aD~vl~VvD~s~~~s-~~~~~~~~~~l~~l------~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~-------- 370 (476)
T 3gee_A 311 AEADLILYLLDLGTERL-DDELTEIRELKAAH------P--AAKFLTVANKLDRAANADALI--RAIADG-T-------- 370 (476)
T ss_dssp SSCSEEEEEEETTTCSS-GGGHHHHHHHHHHC------T--TSEEEEEEECTTSCTTTHHHH--HHHHHH-H--------
T ss_pred ccCCEEEEEEECCCCcc-hhhhHHHHHHHHhc------C--CCCEEEEEECcCCCCccchhH--HHHHhc-C--------
Confidence 88999999999998654 22 233332221 2 389999999999986654321 112211 0
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..++++|||++|+| +++++++|.+
T Consensus 371 -----------------------------~~~~i~vSAktg~G---I~eL~~~i~~ 394 (476)
T 3gee_A 371 -----------------------------GTEVIGISALNGDG---IDTLKQHMGD 394 (476)
T ss_dssp -----------------------------TSCEEECBTTTTBS---HHHHHHHHTH
T ss_pred -----------------------------CCceEEEEECCCCC---HHHHHHHHHH
Confidence 03578899999999 9999999865
No 129
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.89 E-value=3.8e-23 Score=176.19 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccceeeEEEE--------ec----CccEEEEECCCchhhhhhhHH
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKENVGNFT--------YE----KKNIKIVDLPGEDRLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~~~~~~--------~~----~~~~~i~D~~G~~~~~~~~~~ 74 (211)
....+||+++|.+|||||||+++++++.+...+ +|++....... ++ +..+.+|||||++.+.. +..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-~~~ 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-SHQ 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-TCH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-HHH
Confidence 345689999999999999999999998875544 66666655431 22 23899999999999988 688
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccc
Q psy4433 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSN 154 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (211)
.+++++|++|+|+|+++.+. . ..|+..+.... .++|+++|+||+|+........ +.+.+...
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~-~---~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~-------- 178 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN-K---HYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINERFP-------- 178 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG-H---HHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHHHCG--------
T ss_pred HHccCCcEEEEEEeCCCchh-H---HHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHHHHH--------
Confidence 88999999999999987533 3 33444433221 2389999999999986554321 11221111
Q ss_pred ccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 155 QLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 179 ---------------------------~~~~~~~~vSA~~g~g---i~eL~~~l~~ 204 (535)
T 3dpu_A 179 ---------------------------AIENRFHRISCKNGDG---VESIAKSLKS 204 (535)
T ss_dssp ---------------------------GGTTCEEECCC--------CTTHHHHHHH
T ss_pred ---------------------------hcCCceEEEecCcccC---HHHHHHHHHH
Confidence 0114689999999999 9999999864
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=2.3e-22 Score=168.27 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCccEEEEECCC----------chhhhhhhHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPG----------EDRLRNKFFD 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~ 74 (211)
...++|+++|.+|+|||||+|+|++... ...+++++ .....+.+++..+.+||||| ++.+......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3568999999999999999999997653 33444333 33456778888999999999 6777663233
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH--HHHHHHHHHHHHHHhhhc
Q psy4433 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS--SVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~ 152 (211)
.+++.+|++++|+|+++... .... ++...+.. .++|+++|+||+|+.+.+.. .+..+.+.+.+..
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~-~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----- 339 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF----- 339 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG-----
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHH-HHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc-----
Confidence 47788999999999987432 2222 33333322 23899999999999865543 3333333322221
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 340 -----------------------------~~~~~~~~~SA~~g~g---v~~l~~~i~~ 365 (456)
T 4dcu_A 340 -----------------------------LDYAPILFMSALTKKR---IHTLMPAIIK 365 (456)
T ss_dssp -----------------------------GTTSCEEECCTTTCTT---GGGHHHHHHH
T ss_pred -----------------------------CCCCCEEEEcCCCCcC---HHHHHHHHHH
Confidence 0125789999999999 9999999864
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=3.2e-22 Score=161.60 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=100.4
Q ss_pred cccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcC
Q psy4433 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQ 111 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~ 111 (211)
||+|.....+.+++..+.+|||+|++.++. .|..|+++++++|+|+|+++. .+.+.++..|+..++....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~-~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERK-KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhH-HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 355666666777777999999999999999 799999999999999999984 2359999999999988765
Q ss_pred cCCCCCcEEEEEeCCCccCC-----------------CCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCC
Q psy4433 112 VQSSRVNILVCCNKQDQTLA-----------------KSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDK 174 (211)
Q Consensus 112 ~~~~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (211)
+.+ +|+++|+||+|+... ...++..+.+......+..
T Consensus 258 ~~~--~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------------------------ 311 (353)
T 1cip_A 258 FTD--TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------------------------ 311 (353)
T ss_dssp GTT--SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------------------------
T ss_pred ccC--CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------------------------
Confidence 555 999999999999522 1222222222221110000
Q ss_pred CeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 175 DFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 175 ~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......+.+++|||++|+| |+++++|+.+
T Consensus 312 ----~~~~~~~~~~etSA~~~~n---V~~vF~~v~~ 340 (353)
T 1cip_A 312 ----RKDTKEIYTHFTCATDTKN---VQFVFDAVTD 340 (353)
T ss_dssp ----CTTTCCEEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ----ccCCCceEEEEEECcCchh---HHHHHHHHHH
Confidence 0002348899999999999 9999999864
No 132
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=2.4e-22 Score=168.93 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc----c---ccc---ccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK----Y---FES---CTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKS 78 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~----~---~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 78 (211)
.++++|+++|..++|||||+++|++.. . ... ..|+...+..+.+++..+.+|||||+++|.. .+..++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~-~~~~~~~ 95 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR-AVVSAAD 95 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHH-HHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHH-HHHHHHh
Confidence 346899999999999999999999866 1 111 1355555566777888999999999999988 4667788
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.. ..+..+.+..+.. .++|+++|+||+|+.+........+++.+.+... ..
T Consensus 96 ~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~--------~~ 159 (482)
T 1wb1_A 96 IIDLALIVVDAKEGP--KTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST--------HN 159 (482)
T ss_dssp SCCEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS--------SS
T ss_pred hCCEEEEEEecCCCc--cHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh--------cc
Confidence 899999999998732 2333444333221 1288899999999985332333333333322210 00
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| +++|+++|.+
T Consensus 160 -----------------------~~~~~ii~vSA~~g~g---I~~L~~~L~~ 185 (482)
T 1wb1_A 160 -----------------------LKNSSIIPISAKTGFG---VDELKNLIIT 185 (482)
T ss_dssp -----------------------GGGCCEEECCTTTCTT---HHHHHHHHHH
T ss_pred -----------------------cccceEEEEECcCCCC---HHHHHHHHHH
Confidence 0126789999999999 9999999875
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=1.7e-21 Score=162.11 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=103.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------------------------cccccceeeEEEEec
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|+... ... ...|+......++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3567899999999999999999996431 100 012344444556677
Q ss_pred CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh--hH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK--TL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||++|.. .+..++..+|++|+|+|+++... .+ .+..+.+..... .++| +++|+||+|
T Consensus 94 ~~~~~iiDTPGh~~f~~-~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~D 166 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVP-NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMD 166 (439)
T ss_pred CeEEEEEECCChHHHHH-HHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCC
Confidence 77999999999999988 46667888999999999987421 01 234444333322 1266 999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHH
Q psy4433 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQ 205 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~ 205 (211)
+..........+.+.+++...... .. .. ....++++++||++|+| ++++.
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~--~g---~~--------------------~~~~~~~i~iSA~~G~n---i~~l~ 216 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKK--VG---FN--------------------PKKDIHFMPCSGLTGAN---LKEQS 216 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHH--hc---cc--------------------ccCCeeEEEeeccCCcc---ccccc
Confidence 975433222222222222211000 00 00 00137899999999999 88843
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=3.2e-22 Score=167.64 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCccEEEEECCCch-hhhh-------hhHHHhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGED-RLRN-------KFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~-------~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++.+. ...+| |.......+.+++..+.+|||||+. .+.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 44454 3345566788888899999999987 4421 1234567
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.+ ... .+.+ ..+ . ++|+++|+||+|+.......+ +.+...
T Consensus 322 ~~aD~vl~VvD~s~~~s-~~~-~~il-~~l-----~--~~piivV~NK~DL~~~~~~~~----~~~~~~----------- 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLD-EED-RKIL-ERI-----K--NKRYLVVINKVDVVEKINEEE----IKNKLG----------- 376 (482)
T ss_dssp HHCSEEEEEEETTSCCC-HHH-HHHH-HHH-----T--TSSEEEEEEECSSCCCCCHHH----HHHHHT-----------
T ss_pred hcccEEEEEecCCCCCC-HHH-HHHH-HHh-----c--CCCEEEEEECcccccccCHHH----HHHHhc-----------
Confidence 88999999999988654 322 2222 222 1 289999999999975433221 111110
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++|||++|+| +++++++|.+
T Consensus 377 -------------------------~~~~~i~iSAktg~G---i~eL~~~l~~ 401 (482)
T 1xzp_A 377 -------------------------TDRHMVKISALKGEG---LEKLEESIYR 401 (482)
T ss_dssp -------------------------CSTTEEEEEGGGTCC---HHHHHHHHHH
T ss_pred -------------------------CCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 113578999999999 9999999875
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=4.2e-22 Score=165.95 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=76.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCccEEEEECCCchh---------hhhhhHHHhhh
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDR---------LRNKFFDQYKS 78 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~ 78 (211)
.+|+++|.+|||||||+|+|++... ...+|.+ ......+.+++..+.+|||||++. ++. .+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~-~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKE-VTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHH-HHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHH-HHHHHHH
Confidence 5899999999999999999998764 3444433 345667888888999999999753 344 4667889
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
.+|++++|+|+++..+..+ .++..++.. .++|+++|+||+|+.
T Consensus 81 ~ad~il~V~D~~~~~~~~d---~~i~~~l~~-----~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED---ESLADFLRK-----STVDTILVANKAENL 123 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH---HHHHHHHHH-----HTCCEEEEEESCCSH
T ss_pred hCCEEEEEEECCCCCCHHH---HHHHHHHHH-----cCCCEEEEEeCCCCc
Confidence 9999999999987443222 223333321 128999999999985
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=1.6e-21 Score=160.97 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=98.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc---ccccc-c--ccceeeEEEEe---------------c--C------ccEE
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK---YFESC-T--SLKENVGNFTY---------------E--K------KNIK 58 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~---~~~~~-~--t~~~~~~~~~~---------------~--~------~~~~ 58 (211)
+++.++|+++|+.++|||||+++|++.. +.... + |+...+....+ + + ..+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 22211 2 44433333222 1 1 4799
Q ss_pred EEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHH
Q psy4433 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVK 138 (211)
Q Consensus 59 i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 138 (211)
+||||||+.|.. .+......+|++|+|+|+++... ..+..+.+..+.. +.. .|+++|+||+|+.+........
T Consensus 85 iiDtPGh~~f~~-~~~~~~~~~D~~ilVvda~~g~~-~~qt~e~l~~~~~---l~~--~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 85 FVDSPGHETLMA-TMLSGASLMDGAILVIAANEPCP-QPQTKEHLMALEI---LGI--DKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEECSSHHHHHH-HHHTTCSCCSEEEEEEETTSCSS-CHHHHHHHHHHHH---TTC--CCEEEEEECTTSSCTTTTTTHH
T ss_pred EEECCCHHHHHH-HHHHhHhhCCEEEEEEECCCCCC-CchhHHHHHHHHH---cCC--CeEEEEEEccCCCCHHHHHHHH
Confidence 999999999987 35556677899999999987421 2333333332221 111 5899999999998655432222
Q ss_pred HHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 139 TLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 158 ~~i~~~l~~---~-----------------------------~~~~~~~i~vSA~~g~g---i~~L~~~l~~ 194 (408)
T 1s0u_A 158 EQIKEFVKG---T-----------------------------IAENAPIIPISAHHEAN---IDVLLKAIQD 194 (408)
T ss_dssp HHHHHHHTT---S-----------------------------TTTTCCEEEC------C---HHHHHHHHHH
T ss_pred HHHHHHHhh---c-----------------------------CCCCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 233222210 0 01226789999999999 9999999875
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=3.1e-21 Score=156.68 Aligned_cols=160 Identities=21% Similarity=0.202 Sum_probs=102.3
Q ss_pred CCE-EEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCccEEEEECCCc---------hhhhhhhHHHhh
Q psy4433 11 QKV-VLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKKNIKIVDLPGE---------DRLRNKFFDQYK 77 (211)
Q Consensus 11 ~~k-i~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~ 77 (211)
.++ |+++|++|||||||+|+|++.... ... +|.++....+.+++..+.+|||+|. +.+.. .+. .+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~-~~ 255 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLS-EA 255 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHH-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHH-HH
Confidence 455 999999999999999999987752 222 4555667788888889999999997 23443 233 46
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
..+|++++|+|++++..........+..++...... +.|+++|+||+|+.... .......+....... .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~--~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l---~----- 324 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS--GKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL---Y----- 324 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC--SCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH---C-----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC--CCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh---c-----
Confidence 779999999999886521222233333333321222 38999999999997543 221111111100100 0
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++++||++|+| +++++++|.+
T Consensus 325 ------------------------~~~~~~~~~SA~~g~g---i~~L~~~I~~ 350 (364)
T 2qtf_A 325 ------------------------SPIFDVIPISALKRTN---LELLRDKIYQ 350 (364)
T ss_dssp ------------------------SCEEEEEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------------------CCCCcEEEEECCCCcC---HHHHHHHHHH
Confidence 0115678999999999 9999999875
No 138
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.1e-21 Score=159.28 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=107.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--cccceeeEEEEecCccEEEEECCCchhhh--------hhhHHHhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLR--------NKFFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 77 (211)
...++|+++|++|||||||+|+|++.... ... .|.......+..++..+.+|||||..... ......+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987642 222 34555566666677789999999984321 11223344
Q ss_pred hcCCEEEEEEeCCCchh-hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy4433 78 SSAKGIVYVLDSSTVQK-TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
..+|++++|+|++++.. .+.....++..+.... . ++|+++|+||+|+.......+..+ .+.
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~--~~piilV~NK~Dl~~~~~~~~~~~----~~~---------- 306 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--K--DLPFLVVINKIDVADEENIKRLEK----FVK---------- 306 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--T--TSCEEEEECCTTTCCHHHHHHHHH----HHH----------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--C--CCCEEEEEECcccCChHHHHHHHH----HHH----------
Confidence 56999999999887541 2555666666655421 1 389999999999975432211111 111
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....++++|||++|+| +++++++|.+
T Consensus 307 -------------------------~~~~~~~~iSA~~g~g---i~~l~~~i~~ 332 (357)
T 2e87_A 307 -------------------------EKGLNPIKISALKGTG---IDLVKEEIIK 332 (357)
T ss_dssp -------------------------HTTCCCEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------------------hcCCCeEEEeCCCCcC---HHHHHHHHHH
Confidence 0115678999999999 9999999875
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.4e-21 Score=161.43 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=104.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc---ccccc-c--ccceeeEEEEec-----------------------CccE
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSK---YFESC-T--SLKENVGNFTYE-----------------------KKNI 57 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~---~~~~~-~--t~~~~~~~~~~~-----------------------~~~~ 57 (211)
.++..++|+++|+.++|||||+++|++.. +.... + |+...+..+.+. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34567899999999999999999998543 22221 2 444444333321 1479
Q ss_pred EEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH
Q psy4433 58 KIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137 (211)
Q Consensus 58 ~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 137 (211)
.+||||||+.|... .......+|++|+|+|+++... ..+..+.+..+.. +.. .|+++|+||+|+.+.....+.
T Consensus 86 ~iiDtPGh~~f~~~-~~~~~~~~D~~ilVvda~~g~~-~~qt~e~l~~~~~---~~~--~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 86 SFIDAPGHEALMTT-MLAGASLMDGAILVIAANEPCP-RPQTREHLMALQI---IGQ--KNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEECSSHHHHHHH-HHHCGGGCSEEEEEEETTSCSS-CHHHHHHHHHHHH---HTC--CCEEEEEECGGGSCHHHHHHH
T ss_pred EEEECCChHHHHHH-HHhhhhhCCEEEEEEECCCCCC-ChhHHHHHHHHHH---cCC--CcEEEEEECccCCCHHHHHHH
Confidence 99999999999884 5556677999999999987421 1233333332211 111 589999999999754322222
Q ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 138 KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.+.+.. . ....++++++||++|+| +++|+++|.+
T Consensus 159 ~~~i~~~l~~---~-----------------------------~~~~~~~i~vSA~~g~g---i~~L~~~l~~ 196 (410)
T 1kk1_A 159 YRQIKEFIEG---T-----------------------------VAENAPIIPISALHGAN---IDVLVKAIED 196 (410)
T ss_dssp HHHHHHHHTT---S-----------------------------TTTTCCEEECBTTTTBS---HHHHHHHHHH
T ss_pred HHHHHHHHHh---c-----------------------------CcCCCeEEEeeCCCCCC---HHHHHHHHHH
Confidence 2222221110 0 01226889999999999 9999999875
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=5.1e-23 Score=169.82 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=103.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccc--cccceeeEEEEecCc-cEEEEECCCchhhhh------hhHHHh
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESC--TSLKENVGNFTYEKK-NIKIVDLPGEDRLRN------KFFDQY 76 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~------~~~~~~ 76 (211)
....++|+++|..|+|||||+++|++..+. ... .|+......+.+.+. .+.+|||||+..+.. ..+..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 345789999999999999999999987753 222 344455666777776 899999999975532 124557
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccc
Q psy4433 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQL 156 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (211)
+.++|++++|+|++. .. ....++..+... ++|+++|+||+|+....... ..+.+.+
T Consensus 111 l~~aD~vllVvD~~~-~~---~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~~-~~~~l~~------------- 166 (423)
T 3qq5_A 111 FYRADCGILVTDSAP-TP---YEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAEE-LKGLYES------------- 166 (423)
T ss_dssp HTSCSEEEEECSSSC-CH---HHHHHHHHHHHT------TCCEEEECCCCTTTTCCCTH-HHHHSSC-------------
T ss_pred HhcCCEEEEEEeCCC-hH---HHHHHHHHHHhc------CCCEEEEEeCcCCCCccHHH-HHHHHHH-------------
Confidence 788999999999933 22 233444444322 38999999999998776541 1111110
Q ss_pred ccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 157 EDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...++++++||++|+| +++++++|.+
T Consensus 167 -------------------------~~g~~v~~vSAktg~g---I~eL~~~L~~ 192 (423)
T 3qq5_A 167 -------------------------RYEAKVLLVSALQKKG---FDDIGKTISE 192 (423)
T ss_dssp -------------------------CTTCCCCCCSSCCTTS---TTTHHHHHHH
T ss_pred -------------------------HcCCCEEEEECCCCCC---HHHHHHHHHH
Confidence 1125778999999999 9999999875
No 141
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=7.4e-24 Score=179.03 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=110.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cccce--eeEEEEe-cCccEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSLKE--NVGNFTY-EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~~~--~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
+.++|+++|++|+|||||+++|.+..+.... ++++. ....+.+ ++..+.+||||||+.|.. ++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-MRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-SBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-HHHHHHccCCEEEE
Confidence 4688999999999999999999987653322 33333 3333444 345899999999999988 57778889999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.. ..+..+.+..... .++|+++|+||+|+.+..... ....+.. ..
T Consensus 82 VVDa~dg~--~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~-v~~~l~~-~~------------------- 132 (537)
T 3izy_P 82 VVAADDGV--MKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEK-VKKELLA-YD------------------- 132 (537)
T ss_dssp ECBSSSCC--CHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCS-SSSHHHH-TT-------------------
T ss_pred EEECCCCc--cHHHHHHHHHHHH------cCCcEEEEEecccccccchHH-HHHHHHh-hh-------------------
Confidence 99998844 3455555555442 238999999999997543221 1111110 00
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++....++++++||++|+| +++|+++|..
T Consensus 133 ----------~~~e~~~~~~~iv~vSAktG~G---I~eLle~I~~ 164 (537)
T 3izy_P 133 ----------VVCEDYGGDVQAVHVSALTGEN---MMALAEATIA 164 (537)
T ss_dssp ----------SCCCCSSSSEEECCCCSSSSCS---SHHHHHHHHH
T ss_pred ----------hhHHhcCCCceEEEEECCCCCC---chhHHHHHHH
Confidence 0011223447899999999999 9999999864
No 142
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=3.3e-22 Score=160.99 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=105.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ccEEEEECCCchh----hhhhhHHHh---hhcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDR----LRNKFFDQY---KSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~~~~~~~---~~~~ 80 (211)
.+|+++|.+|||||||+++|++.+. ...+ +|..++...+.+++ ..+.+|||||+.. +.. +...+ +..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-LGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-THHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-hHHHHHHHHHhc
Confidence 4789999999999999999998664 2333 45667777788886 5899999999743 111 22333 3459
Q ss_pred CEEEEEEeCCCc--hhhHHHHHHHHHHHHcCc-CcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 81 KGIVYVLDSSTV--QKTLRDVAESLYVILADP-QVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 81 d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+++|+|+|+++. ...+.....++..+.... .+. ++|+++|+||+|+.... +..+.+.+.+.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~--~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~----------- 301 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT--ERPQIIVANKMDMPEAA---ENLEAFKEKLT----------- 301 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT--TSCBCBEEECTTSTTHH---HHHHHHHHHCC-----------
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc--CCCEEEEEECccCCCCH---HHHHHHHHHhh-----------
Confidence 999999999872 223666665555554321 123 39999999999997432 11222222111
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+++++||++|+| +++|+++|.+
T Consensus 302 -------------------------~~~~v~~iSA~tg~g---i~eL~~~l~~ 326 (342)
T 1lnz_A 302 -------------------------DDYPVFPISAVTREG---LRELLFEVAN 326 (342)
T ss_dssp -------------------------SCCCBCCCSSCCSST---THHHHHHHHH
T ss_pred -------------------------cCCCEEEEECCCCcC---HHHHHHHHHH
Confidence 014568899999999 9999999865
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=2.3e-21 Score=154.60 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=99.7
Q ss_pred cccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCc
Q psy4433 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 110 (211)
||+|.....+++++..+.+|||+|+++++. .|..|+++++++|+|+|++ +. +.+.++..++..++..+
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~-~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERR-KWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHT-TGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHH-HHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhh
Confidence 566777777888888999999999999999 7999999999999999765 43 34889999999998876
Q ss_pred CcCCCCCcEEEEEeCCCccCCC------------------CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCC
Q psy4433 111 QVQSSRVNILVCCNKQDQTLAK------------------SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNP 172 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~~~~------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (211)
.+.+ +|+++++||+|+...+ +.++..+.+..+.....
T Consensus 231 ~~~~--~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~----------------------- 285 (327)
T 3ohm_A 231 WFQN--SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN----------------------- 285 (327)
T ss_dssp GGTT--CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-----------------------
T ss_pred ccCC--ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-----------------------
Confidence 6666 9999999999996422 22222222222222100
Q ss_pred CCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 173 DKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..-...+.++++||++++| |+++++.+.+
T Consensus 286 ------~~~~~~i~~~~TsA~d~~n---V~~vF~~v~~ 314 (327)
T 3ohm_A 286 ------PDSDKIIYSHFTCATDTEN---IRFVFAAVKD 314 (327)
T ss_dssp ------TTTTSCEEEEECCTTCHHH---HHHHHHHHHH
T ss_pred ------ccccCCcEEEEEEeecCHH---HHHHHHHHHH
Confidence 0012347889999999999 9999987754
No 144
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4.7e-21 Score=159.41 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---ccc---------------------------------ccccceeeEEEEe
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY---FES---------------------------------CTSLKENVGNFTY 52 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~---~~~---------------------------------~~t~~~~~~~~~~ 52 (211)
+..++|+++|.+++|||||+++|++... ... ..|+......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4458999999999999999999986431 000 0122222333455
Q ss_pred cCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 53 EKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
++..+.+||||||++|.. .+..++..+|++|+|+|+++.. ..+..+++...... .. .|+++|+||+|+.+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~-~~~~~~~~aD~~ilVvDa~~g~--~~qt~~~l~~~~~~---~~--~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTR-NMATGASTCDLAIILVDARYGV--QTQTRRHSYIASLL---GI--KHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHH-HHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHHT---TC--CEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHH-HHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc---CC--CeEEEEEEcCcCCcc
Confidence 566899999999999988 4667788899999999998854 24444444433221 11 369999999999753
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=8.6e-21 Score=160.73 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------------------Ccccc-------cccccceeeEEEEecCccEEEEECCC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY------------------SKYFE-------SCTSLKENVGNFTYEKKNIKIVDLPG 64 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G 64 (211)
+..+|+++|++|+|||||+++|+. ..... ...|+......+.+++..+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 457999999999999999999961 11111 11244455666788888999999999
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHH
Q psy4433 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~ 144 (211)
+.+|.. .+..+++.+|++|+|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.
T Consensus 92 ~~df~~-~~~~~l~~aD~allVvDa~~g~~--~~t~~~~~~~~~------~~iPiivviNK~Dl~~~~-~~~~l~ei~~~ 161 (528)
T 3tr5_A 92 HADFTE-DTYRTLTAVDSALMVIDAAKGVE--PRTIKLMEVCRL------RHTPIMTFINKMDRDTRP-SIELLDEIESI 161 (528)
T ss_dssp STTCCH-HHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHHT------TTCCEEEEEECTTSCCSC-HHHHHHHHHHH
T ss_pred chhHHH-HHHHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHH------cCCCEEEEEeCCCCcccc-HHHHHHHHHHh
Confidence 999988 57888899999999999988543 334445544432 238999999999997543 33344445544
Q ss_pred HH
Q psy4433 145 LN 146 (211)
Q Consensus 145 ~~ 146 (211)
+.
T Consensus 162 l~ 163 (528)
T 3tr5_A 162 LR 163 (528)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=2.5e-21 Score=150.62 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccc-c---ccceeeEEEEecCccEEEEECCCchhhhh----------hhH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YFESC-T---SLKENVGNFTYEKKNIKIVDLPGEDRLRN----------KFF 73 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~-~---t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 73 (211)
.+.++|+++|++|||||||+++|++.. +.... + |.......+.+++..+.+|||||+..+.. ...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876 33222 2 33344556777888999999999865321 023
Q ss_pred HHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEe-CCCccCC
Q psy4433 74 DQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCN-KQDQTLA 131 (211)
Q Consensus 74 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~ 131 (211)
..+++.+|++++|+|+++..........++....... ...|.++|+| |+|+.+.
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED----AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG----GGGGEEEEEECGGGGTTC
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch----hhccEEEEEEcccccCCc
Confidence 3367889999999999864332333445555543211 1256777776 9999843
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2.7e-21 Score=162.81 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=101.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--cccc--------------------------------ccccceeeEEEEec
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YFES--------------------------------CTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~~~--------------------------------~~t~~~~~~~~~~~ 53 (211)
.+..+||+++|.+|+|||||+++|+... +... ..|+......+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567899999999999999999998541 1100 12333344456666
Q ss_pred CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh-----hHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK-----TLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.+|||||+++|.. .+..++..+|++|+|+|+++... ...+..+.+..... ... .|+++|+||+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~-~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~--~~iIvviNK~Dl 183 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVP-NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGI--HNLIIAMNKMDN 183 (483)
T ss_dssp SCEEEEECCCCCGGGHH-HHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTC--CCEEEEEECGGG
T ss_pred CceEEEEECCCcHHHHH-HHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCC--CcEEEEEECcCc
Confidence 77999999999999998 57778889999999999987421 01233333222221 111 569999999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHH
Q psy4433 129 TLAKS--SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQ 203 (211)
Q Consensus 129 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~ 203 (211)
.+... .++..+.+...+...... ...++++++||++|+| +++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~------------------------------~~~~~~i~iSA~~g~g---i~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFF------------------------------EDNINWVPISGFSGEG---VYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCC------------------------------GGGEEEEECCSSSCTT---SSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCC------------------------------cccceEEEEeeecCCC---ccc
Confidence 86332 122223333222211000 1237899999999999 875
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=3.4e-22 Score=166.41 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=95.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--cccccc--ceeeEEEEecCccEEEEECCCch--------hhhhhhHHHhhh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSL--KENVGNFTYEKKNIKIVDLPGED--------RLRNKFFDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 78 (211)
.++|+++|.+|||||||+|+|++.... ...|.+ ...+..+.+++..+.+|||||+. .+.. .+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ-QAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHH-HHHHHHH
Confidence 378999999999999999999987653 223322 23344556667799999999985 5555 4677888
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+.++.+ ....++...+.. .++|+++|+||+|+...... .. .
T Consensus 82 ~ad~il~vvD~~~~~~---~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~~----------~~--------~--- 132 (436)
T 2hjg_A 82 EADVIIFMVNGREGVT---AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRAN----------IY--------D--- 132 (436)
T ss_dssp HCSEEEEEEETTTCSC---HHHHHHHHHHTT-----CCSCEEEEEECCCC-----C----------CC--------S---
T ss_pred hCCEEEEEEeCCCCCC---HHHHHHHHHHHH-----cCCCEEEEEECccCccchhh----------HH--------H---
Confidence 9999999999987544 223445555543 33899999999998643110 00 0
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+..++. ..++++||++|.| +++|+++|.+
T Consensus 133 -------------------~~~lg~-~~~~~iSA~~g~g---v~~L~~~i~~ 161 (436)
T 2hjg_A 133 -------------------FYSLGF-GEPYPISGTHGLG---LGDLLDAVAE 161 (436)
T ss_dssp -------------------SGGGSS-CCCEECBTTTTBT---HHHHHHHHHH
T ss_pred -------------------HHHcCC-CCeEEEeCcCCCC---hHHHHHHHHH
Confidence 000010 1458899999999 9999999865
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=5.3e-22 Score=165.63 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--cccccccc--eeeEEEEecCccEEEEECCCchhhhhh-------hHHHhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRNK-------FFDQYK 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~ 77 (211)
+..++|+++|++|||||||+|+|++... ....++++ .....+.+++..+.+|||||+..+... ....++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999998654 33344333 334567788889999999998665431 122256
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLE 157 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (211)
+.+|++++|+|++++.. . ....++..+ . . .|+++|+||+|+.+..... .+
T Consensus 302 ~~aD~vl~VvD~s~~~~-~-~~~~i~~~l-~-----~--~piivV~NK~Dl~~~~~~~--------~~------------ 351 (462)
T 3geh_A 302 NTADLVLLTIDAATGWT-T-GDQEIYEQV-K-----H--RPLILVMNKIDLVEKQLIT--------SL------------ 351 (462)
T ss_dssp CSCSEEEEEEETTTCSC-H-HHHHHHHHH-T-----T--SCEEEEEECTTSSCGGGST--------TC------------
T ss_pred hcCCEEEEEeccCCCCC-H-HHHHHHHhc-c-----C--CcEEEEEECCCCCcchhhH--------HH------------
Confidence 78999999999988554 2 223333332 1 2 7999999999997543221 00
Q ss_pred cchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 158 DTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.++....+++++||++|+| +++++++|.+
T Consensus 352 ---------------------~~~~~~~~~i~iSAktg~G---i~eL~~~i~~ 380 (462)
T 3geh_A 352 ---------------------EYPENITQIVHTAAAQKQG---IDSLETAILE 380 (462)
T ss_dssp ---------------------CCCTTCCCEEEEBTTTTBS---HHHHHHHHHH
T ss_pred ---------------------HHhccCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 0011225789999999999 9999999865
No 150
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=3.5e-21 Score=156.05 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred cceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc---------hhhHHHHHHHHHHHHcCcCcC
Q psy4433 43 LKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV---------QKTLRDVAESLYVILADPQVQ 113 (211)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~ 113 (211)
+|.....+.+++..+.+|||+|++.++. .|..|+++++++|+|+|+++. .+.+.++..++..++....+.
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERK-RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhh-hHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 3444455667777899999999999999 799999999999999999983 234899999999998776555
Q ss_pred CCCCcEEEEEeCCCcc
Q psy4433 114 SSRVNILVCCNKQDQT 129 (211)
Q Consensus 114 ~~~~p~iiv~nK~Dl~ 129 (211)
+ +|+++++||+|+.
T Consensus 268 ~--~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 N--VSIILFLNKTDLL 281 (362)
T ss_dssp T--SEEEEEEECHHHH
T ss_pred C--CCEEEEEEChhhh
Confidence 5 9999999999996
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=2.4e-21 Score=153.88 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccc--ccc-cc-ceeeEEEEecCccEEEEECCCch-hhhhhh-------HHHhhh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFE--SCT-SL-KENVGNFTYEKKNIKIVDLPGED-RLRNKF-------FDQYKS 78 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~-t~-~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~-------~~~~~~ 78 (211)
..+|+++|++|||||||+|+|++..+.. ..+ |+ ....+.+..++..+.+|||||+. .....+ ...+++
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 4579999999999999999999887532 222 22 22334456666689999999997 332211 233567
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhccccccc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED 158 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (211)
.+|++++|+|+++.. ....++...+.. .+.|+++|+||+|+... .....+.+.+ +. ..
T Consensus 88 ~~D~vl~Vvd~~~~~----~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~~l~~-l~---~~------- 145 (301)
T 1ega_A 88 DVELVIFVVEGTRWT----PDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLPHLQF-LA---SQ------- 145 (301)
T ss_dssp CEEEEEEEEETTCCC----HHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHHHHHH-HH---TT-------
T ss_pred cCCEEEEEEeCCCCC----HHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHHHHHH-HH---Hh-------
Confidence 799999999997622 222344444432 23899999999999752 2222222221 11 00
Q ss_pred chhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 159 TNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
++. ..++++||++|+| +++++++|.+
T Consensus 146 ----------------------~~~-~~~i~iSA~~g~~---v~~l~~~i~~ 171 (301)
T 1ega_A 146 ----------------------MNF-LDIVPISAETGLN---VDTIAAIVRK 171 (301)
T ss_dssp ----------------------SCC-SEEEECCTTTTTT---HHHHHHHHHT
T ss_pred ----------------------cCc-CceEEEECCCCCC---HHHHHHHHHH
Confidence 000 2678999999999 9999999874
No 152
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=3.9e-21 Score=164.68 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----cccceeeEEEE----------------ecCccEEEEECCCchh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-----TSLKENVGNFT----------------YEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 67 (211)
.+.++|+++|++++|||||+++|++..+.... ++++....... ++...+++||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35689999999999999999999976543322 22222222111 0111499999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC--------------
Q psy4433 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-------------- 133 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-------------- 133 (211)
|.. .+..+++.+|++|+|+|+++... .+..+.+..+.. .++|+++|+||+|+.+...
T Consensus 83 F~~-~~~r~~~~aD~aILVvDa~~Gv~--~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FTT-LRKRGGALADLAILIVDINEGFK--PQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CTT-SBCSSSBSCSEEEEEEETTTCCC--HHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHH-HHHHHHhhCCEEEEEEECCCCcc--HhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 988 56777888999999999988321 223333333322 2389999999999975321
Q ss_pred HHHHHHHHHHHHHHHhh-hcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 134 SSVVKTLLQKELNLVRR-TKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.......+...+..... .....+.. ..+. ...+....++++++||++|+| +++|++||..
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~-------e~~~-------~l~~~~~~vpvv~vSA~tG~G---I~eLl~~I~~ 214 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFES-------ERFD-------RVTDFASQVSIIPISAITGEG---IPELLTMLMG 214 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEE-------EEGG-------GCSCTTTEEEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcch-------HHHH-------HHHhccCcceEEEEeccCCCC---chhHHHHHHh
Confidence 12222222211111000 00000000 0000 001123458999999999999 9999999864
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.1e-20 Score=157.35 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccccc--ceeeEEEEecCccEEEEECCCchhhhhh-----------hHH
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--FESCTSL--KENVGNFTYEKKNIKIVDLPGEDRLRNK-----------FFD 74 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~ 74 (211)
..++|+++|++|||||||+|+|++... ....+++ ....+.+.+++..+.+|||||+.+.... ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 357999999999999999999998764 3333333 3445668888889999999998543220 012
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC--HHHHHHHHHHHHHHHhhhc
Q psy4433 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS--SSVVKTLLQKELNLVRRTK 152 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~ 152 (211)
.+++.+|++++|+|+++..+ ... ..+...+.. .++|+++|+||+|+..... ..+..+.+.+.+..
T Consensus 259 ~~i~~ad~vllv~d~~~~~~-~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----- 325 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGIT-RQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF----- 325 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG-----
T ss_pred HHHhhCCEEEEEEeCCCCCC-HHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc-----
Confidence 35677999999999987443 221 222333221 2389999999999976443 22222223222210
Q ss_pred ccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 153 SNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++++||++|.| ++++++.|.+
T Consensus 326 -----------------------------~~~~~~~~~SA~~g~g---v~~l~~~i~~ 351 (439)
T 1mky_A 326 -----------------------------IDYSPLIFTSADKGWN---IDRMIDAMNL 351 (439)
T ss_dssp -----------------------------GTTSCEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------------CCCCcEEEEECCCCCC---HHHHHHHHHH
Confidence 0114678999999999 9999998864
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=1.8e-20 Score=155.95 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEecC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYEK 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 54 (211)
++.++|+++|+.++|||||+++|+.. .+.. ...|+......+..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 2211 1124444444566667
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHH-------HHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLR-------DVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
..+.+|||||+++|.. .+..++..+|++|+|+|+++ .+ ++ +..+.+...... .. .|+++++||+|
T Consensus 84 ~~~~iiDtpG~~~f~~-~~~~~~~~aD~~ilVvDa~~-gs-fe~~~~~~~qt~~~~~~~~~~---~~--~~iivviNK~D 155 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVK-NMITGASQADAAILVVSAKK-GE-YEAGMSVEGQTREHIILAKTM---GL--DQLIVAVNKMD 155 (435)
T ss_dssp CEEEECCCSSSTTHHH-HHHHTSSCCSEEEEEEECST-TH-HHHHHSTTCHHHHHHHHHHHT---TC--TTCEEEEECGG
T ss_pred eEEEEEECCCcHHHHH-HHHhhhhhcCEEEEEEECCC-Cc-cccccccchHHHHHHHHHHHc---CC--CeEEEEEEccc
Confidence 7999999999999998 47778889999999999987 32 33 333333322211 11 36899999999
Q ss_pred ccCC
Q psy4433 128 QTLA 131 (211)
Q Consensus 128 l~~~ 131 (211)
+.+.
T Consensus 156 l~~~ 159 (435)
T 1jny_A 156 LTEP 159 (435)
T ss_dssp GSSS
T ss_pred CCCc
Confidence 9864
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=8.4e-21 Score=154.54 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
+|+++|.+++|||||+++|+ ....|+......+++++..+.+|||||+++|..+ ....++.+|++|+|+| .+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~-~~~~~~~aD~ailVvd-~~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKS-LITALNISDIAVLCIP-PQG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHH-HHHHHHTCSEEEEEEC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHH-HHHHHHHCCEEEEEEc-CCC
Confidence 99999999999999999998 3335566566667777779999999999999874 5556788999999999 542
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEe-CCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccC
Q psy4433 93 QKTLRDVAESLYVILADPQVQSSRVNI-LVCCN-KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLG 170 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (211)
. ..+..+++..+.. .++|. ++++| |+|+ +........+++.+.+... .
T Consensus 96 ~--~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~-----------~---------- 145 (370)
T 2elf_A 96 L--DAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT-----------V---------- 145 (370)
T ss_dssp C--CHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS-----------T----------
T ss_pred C--cHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc-----------C----------
Confidence 2 4555665554432 12677 89999 9999 4322222222333222100 0
Q ss_pred CCCCCeeecCCCCcEEEEE--Eeeec---CCCccchHHHHHHHhh
Q psy4433 171 NPDKDFEFSDLYNQVSFCD--TTGLD---SASEYDVEQLQDWMVT 210 (211)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~--~Sa~t---g~g~~~i~~l~~~i~~ 210 (211)
...+++++ +||++ |+| +++|+++|.+
T Consensus 146 -----------~~~~~ii~~~~SA~~~~~g~g---i~~L~~~l~~ 176 (370)
T 2elf_A 146 -----------LQDWECISLNTNKSAKNPFEG---VDELKARINE 176 (370)
T ss_dssp -----------TTTCEEEECCCCTTSSSTTTT---HHHHHHHHHH
T ss_pred -----------CCceEEEecccccccCcCCCC---HHHHHHHHHh
Confidence 01278999 99999 999 9999998864
No 156
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=5.3e-21 Score=150.01 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-ccc--------ccccceeeEEEEe--cCc--cEEEEECCCch-------hhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY-FES--------CTSLKENVGNFTY--EKK--NIKIVDLPGED-------RLR 69 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~--------~~t~~~~~~~~~~--~~~--~~~i~D~~G~~-------~~~ 69 (211)
..++|+++|.+|+|||||+|+|++... ... .+|++.......+ ++. .+.+|||||+. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999886553 222 3455555554443 443 89999999982 222
Q ss_pred hhhH-------HHhhhc-------------CCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 70 NKFF-------DQYKSS-------------AKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 70 ~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
. +. ..|+.. +|+++++++.+... +......+...+.. ++|+++|+||+|+.
T Consensus 87 ~-i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~--~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 87 P-VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--LKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp H-HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS--CCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred H-HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC--CCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 2 22 334432 67899999765511 12222233333322 38999999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy4433 130 LAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
...+.....+.+.+.+.. ..++++.+||++|+| +++++++|.
T Consensus 158 ~~~e~~~~~~~i~~~l~~-----------------------------------~~i~v~~~sa~~~~~---~~~l~~~l~ 199 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQE-----------------------------------HKIKIYEFPETDDEE---ENKLVKKIK 199 (274)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------------------------TTCCCCCC--------------CHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----------------------------------cCCeEEcCCCCCChh---HHHHHHHHh
Confidence 554443333334333321 125567789999999 999999886
Q ss_pred h
Q psy4433 210 T 210 (211)
Q Consensus 210 ~ 210 (211)
+
T Consensus 200 ~ 200 (274)
T 3t5d_A 200 D 200 (274)
T ss_dssp H
T ss_pred c
Confidence 5
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.84 E-value=2.1e-20 Score=160.10 Aligned_cols=152 Identities=14% Similarity=0.212 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccc-------cccceeeEEEEecC-----ccEEEEECCCchh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK--YF---------ESC-------TSLKENVGNFTYEK-----KNIKIVDLPGEDR 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~--~~---------~~~-------~t~~~~~~~~~~~~-----~~~~i~D~~G~~~ 67 (211)
-.+|+++|+.++|||||+++|+... .. ... .|+......+.+.. ..+++||||||.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3589999999999999999998621 11 000 12222333455542 3789999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy4433 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
|.. .+..+++.+|++|+|+|+++... . +....|..... .++|+++|+||+|+.+.. .....+.+.+.+..
T Consensus 84 F~~-ev~~~l~~aD~aILVVDa~~gv~-~-qt~~~~~~~~~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSY-EVSRSLAACEGALLVVDAGQGVE-A-QTLANCYTAME------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGI 153 (599)
T ss_dssp GHH-HHHHHHHHCSEEEEEEETTTCCC-T-HHHHHHHHHHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHCCEEEEEEECCCCCC-H-HHHHHHHHHHH------CCCCEEEeeeccCccccc-HHHHHHHHHHHhCC
Confidence 998 57788889999999999988544 2 33333444432 238999999999998654 33333334332210
Q ss_pred HhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 148 VRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+ ...++++||++|.| +++++++|.+
T Consensus 154 ------------~-----------------------~~~vi~vSAktg~G---I~~Ll~~I~~ 178 (599)
T 3cb4_D 154 ------------D-----------------------ATDAVRCSAKTGVG---VQDVLERLVR 178 (599)
T ss_dssp ------------C-----------------------CTTCEEECTTTCTT---HHHHHHHHHH
T ss_pred ------------C-----------------------cceEEEeecccCCC---chhHHHHHhh
Confidence 0 01358899999999 9999999864
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-20 Score=161.53 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=83.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc--c--------------------------------cccccceeeEEEEec
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYF--E--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.++.++|+++|.+|+|||||+++|+..... . ...|+......+..+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 456899999999999999999999865321 0 112444455567777
Q ss_pred CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hh---HHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KT---LRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
+..+.+|||||++.|.. .+..++..+|++|+|+|+++.. .. ..+..+.+..... ... .|+++|+||+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~-~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi--~~iIVVvNKiDl 317 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVP-NAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGI--HNLIIAMNKMDN 317 (611)
T ss_dssp SCEEEEEECCSSSCHHH-HHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTC--CEEEEEEECTTT
T ss_pred CceEEEEECCCCcccHH-HHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCC--CeEEEEEecccc
Confidence 77999999999999988 4677788899999999997631 00 1223333332221 111 459999999999
Q ss_pred cCC
Q psy4433 129 TLA 131 (211)
Q Consensus 129 ~~~ 131 (211)
.+.
T Consensus 318 ~~~ 320 (611)
T 3izq_1 318 VDW 320 (611)
T ss_dssp TTT
T ss_pred cch
Confidence 763
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=2.2e-20 Score=159.82 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc---------c-------ccccceeeEEEEec---C--ccEEEEECCCch
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK--YFE---------S-------CTSLKENVGNFTYE---K--KNIKIVDLPGED 66 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~--~~~---------~-------~~t~~~~~~~~~~~---~--~~~~i~D~~G~~ 66 (211)
+-.+|+++|+.++|||||+++|+... ... . ..|+......+.+. + ..+++||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998521 110 0 01222223344443 2 378899999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy4433 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+|.. .+..+++.+|++|+|+|+++... . +....|..... .++|+++|+||+|+.+.. .....+.+.+.+.
T Consensus 85 dF~~-ev~r~l~~aD~aILVVDa~~gv~-~-qt~~~~~~a~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSY-EVSRALAACEGALLLIDASQGIE-A-QTVANFWKAVE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHH-HHHHHHHTCSEEEEEEETTTBCC-H-HHHHHHHHHHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHH-HHHHHHHhCCEEEEEEECCCCcc-H-HHHHHHHHHHH------CCCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 9988 47778899999999999998654 3 33344444432 238999999999998654 3333333332111
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ...++++||++|.| +++++++|.+
T Consensus 155 ------------~~-----------------------~~~vi~vSAktg~G---I~~Lle~I~~ 180 (600)
T 2ywe_A 155 ------------LD-----------------------PEEAILASAKEGIG---IEEILEAIVN 180 (600)
T ss_dssp ------------CC-----------------------GGGCEECBTTTTBS---HHHHHHHHHH
T ss_pred ------------CC-----------------------cccEEEEEeecCCC---chHHHHHHHH
Confidence 00 01368899999999 9999999864
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=1e-21 Score=164.82 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c--ccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVY 85 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~ 85 (211)
.+.++|+++|++++|||||+++|.+..+.... + |.......+.+++..+.+||||||+.|.. ++..++..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-MRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-SBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-HHHHHHhhCCEEEE
Confidence 35689999999999999999999976543222 2 22222334555677899999999999988 56667788999999
Q ss_pred EEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhccc
Q psy4433 86 VLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAAN 165 (211)
Q Consensus 86 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (211)
|+|+++.. ..+..+.+..... .++|+++++||+|+.+..... +...+ ...
T Consensus 81 VVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~~-----v~~~l-----------~~~------ 130 (501)
T 1zo1_I 81 VVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPDR-----VKNEL-----------SQY------ 130 (501)
T ss_dssp EEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCCC-----TTCCC-----------CCC------
T ss_pred EeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHHH-----HHHHH-----------HHh------
Confidence 99998732 2233334433322 238999999999997542110 00000 000
Q ss_pred ccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 166 QTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.-+.....++++++||++|+| +++|+++|..
T Consensus 131 ---------~~~~~~~~~~~~~v~vSAktG~g---I~eLle~I~~ 163 (501)
T 1zo1_I 131 ---------GILPEEWGGESQFVHVSAKAGTG---IDELLDAILL 163 (501)
T ss_dssp ---------CCCTTCCSSSCEEEECCTTTCTT---CTTHHHHTTT
T ss_pred ---------hhhHHHhCCCccEEEEeeeeccC---cchhhhhhhh
Confidence 00001122347899999999999 9999999853
No 161
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=3.9e-20 Score=148.06 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=74.4
Q ss_pred cccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCc
Q psy4433 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 110 (211)
+|+|.....+++++..+.+|||+|+++++. .|..|+++++++|+|+|++ +. ..+.++..++..++...
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~-~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERK-XWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHH-HHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccc-cHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhh
Confidence 456667777888888999999999999999 7999999999999999998 43 45899999999999876
Q ss_pred CcCCCCCcEEEEEeCCCccC
Q psy4433 111 QVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.+ +|+++++||+|+..
T Consensus 225 ~~~~--~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKG--AVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTT--SEEEEEEECHHHHH
T ss_pred ccCC--CeEEEEEECchhhh
Confidence 6666 99999999999863
No 162
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=143.27 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-c----ccceeeEEEEecCccEEEEECCCch-----------hhhhhh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-T----SLKENVGNFTYEKKNIKIVDLPGED-----------RLRNKF 72 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~----t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~ 72 (211)
...+||+++|++|||||||+|+|++..+.... + |.......+.+++..+.+|||||.. .+.. .
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~-~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR-C 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH-H
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH-H
Confidence 45689999999999999999999987763322 2 3334455677888899999999953 3444 3
Q ss_pred HHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy4433 73 FDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 73 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
+..+++++|++|+|+|+++..........++....... ...|+++|+||+|+......
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~----~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER----ARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH----HGGGEEEEEECGGGC-----
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh----ccceEEEEEeCCccCCcccH
Confidence 44556778999999998764432233333333332211 11699999999999765443
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=3.6e-20 Score=143.13 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=82.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc-c----cccceeeEEEEecCccEEEEECCCc--------hhhhhhhHH
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFES-C----TSLKENVGNFTYEKKNIKIVDLPGE--------DRLRNKFFD 74 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~----~t~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~ 74 (211)
....++|+++|.+|||||||+|++++...... . .|.......+.+++..+.+|||||. +.+...+..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 45679999999999999999999998775322 1 3344455667788889999999997 333332222
Q ss_pred Hh---hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 75 QY---KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 75 ~~---~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.+ .+.+|++++|+|+++.........+++...... ...+ .|+++++||+|+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~--~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLK--WMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGG--GEEEEEECGGGGTTC
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhc--cEEEEEEchHhcCCC
Confidence 22 388999999999986433233445555554422 1223 899999999999754
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=4.2e-20 Score=154.49 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=82.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------------------------cccccceeeEEEEec
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYFE--------------------------------SCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|++. .+.. ...|+......+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356789999999999999999999864 1110 113444445556666
Q ss_pred CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchh--hHH---HHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQK--TLR---DVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||++|.. .+..++..+|++|+|+|+++... +++ +..+.+..... .++| +++|+||+|
T Consensus 84 ~~~~~iiDtPGh~~f~~-~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~D 156 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIK-NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMD 156 (458)
T ss_dssp SEEEEEEECCCCTTHHH-HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGG
T ss_pred CceEEEEECCCcHHHHH-HHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 77999999999999988 46777888999999999986421 111 34444433322 1255 999999999
Q ss_pred ccC
Q psy4433 128 QTL 130 (211)
Q Consensus 128 l~~ 130 (211)
+.+
T Consensus 157 l~~ 159 (458)
T 1f60_A 157 SVK 159 (458)
T ss_dssp GGT
T ss_pred ccc
Confidence 974
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=4.7e-20 Score=152.16 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--------ccccc----------c--cccceeeEEEEecCccEEEEECCCch
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYS--------KYFES----------C--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~--------~~~~~----------~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+..++|+++|++++|||||+++|++. .+... . .|+......+..++..+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456789999999999999999999873 11110 1 13333333345555699999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy4433 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
+|.. .+..++..+|++|+|+|+++.. ..+..+++..+.. .++| +++|+||+|+.+
T Consensus 87 ~f~~-~~~~~~~~aD~~ilVvda~~g~--~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DYIK-NMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGHH-HHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHH------TTCCCEEEEEECGGGCC
T ss_pred HHHH-HHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEECccccC
Confidence 9988 4667788899999999998854 3455555554432 1278 899999999975
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=3.6e-20 Score=155.29 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc--------------------------------ccccccceeeEEEEecC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF--------------------------------ESCTSLKENVGNFTYEK 54 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 54 (211)
+..++|+++|+.++|||||+++|+. +.+. ...+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 2111 01134444445567777
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch--hhH---HHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCc
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ--KTL---RDVAESLYVILADPQVQSSRVN-ILVCCNKQDQ 128 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 128 (211)
..+.+||||||++|..+ +..++..+|++|+|+|+++.. .++ .+..+.+..... .++| +++|+||+|+
T Consensus 121 ~~~~iiDtPGh~~f~~~-~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTN-MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMDE 193 (467)
T ss_dssp EEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTTS
T ss_pred eEEEEEECCCcHHHHHH-HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECccC
Confidence 79999999999999884 666778899999999998742 111 123333333221 1277 9999999999
Q ss_pred cCC
Q psy4433 129 TLA 131 (211)
Q Consensus 129 ~~~ 131 (211)
...
T Consensus 194 ~~~ 196 (467)
T 1r5b_A 194 PSV 196 (467)
T ss_dssp TTC
T ss_pred CCc
Confidence 753
No 167
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=1.3e-20 Score=152.12 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCC----------CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEe
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSS----------TVQKTLRDVAESLYVILADPQVQSSRVNILVCCN 124 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 124 (211)
..+.+|||+|+++++. +|..|+++++++|+|+|++ +.. .+.++..|+..++......+ +|+++|+|
T Consensus 183 v~l~iwDtaGQe~~r~-~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~-s~~~~~~~~~~i~~~~~~~~--~piiLvgN 258 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERR-KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEK--TSFMLFLN 258 (354)
T ss_dssp -EEEEEEECCSTTGGG-GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSB-HHHHHHHHHHHHHTCGGGSS--CEEEEEEE
T ss_pred eeeEEEECCCchhhhH-HHHHHhCCCCEEEEEEECcccccccccccchh-HHHHHHHHHHHHHhccccCC--CeEEEEEE
Confidence 3799999999999999 7999999999999999998 434 49999999999987654445 99999999
Q ss_pred CCCccC
Q psy4433 125 KQDQTL 130 (211)
Q Consensus 125 K~Dl~~ 130 (211)
|+||..
T Consensus 259 K~DL~~ 264 (354)
T 2xtz_A 259 KFDIFE 264 (354)
T ss_dssp CHHHHH
T ss_pred Ccchhh
Confidence 999853
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=8.9e-21 Score=158.67 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc--ccccc--eeeEEEEecCccEEEEECCC--------chhhhhhhHHHhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFES--CTSLK--ENVGNFTYEKKNIKIVDLPG--------EDRLRNKFFDQYK 77 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~t~~--~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~ 77 (211)
..++|+++|.+|||||||+|+|++..+... .|.++ .....+.+.+..+.+||||| ++.+.. .+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ-QAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH-HHHhhH
Confidence 457999999999999999999998776422 23222 23334455666999999999 667777 577788
Q ss_pred hcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 78 SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 78 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
+.+|++|+|+|+.+.. .....++...+.. .++|+++|+||+|+.
T Consensus 101 ~~ad~il~VvD~~~~~---~~~d~~l~~~l~~-----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 DEADVIIFMVNGREGV---TAADEEVAKILYR-----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHCSEEEEEEESSSCS---CHHHHHHHHHHTT-----CCSCEEEEEECC---
T ss_pred hhCCEEEEEEeCCCCC---ChHHHHHHHHHHH-----cCCCEEEEEECccch
Confidence 9999999999987633 2334455666543 338999999999985
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=5.6e-20 Score=151.27 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-------ccc------------cccccceeeEEEEecCccEEEEECCCchhhhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK-------YFE------------SCTSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
++++|+++|++++|||||+++|++.. +.. ...|+......+..++..+.+||||||++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998731 110 01122222223444556999999999999988
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccC
Q psy4433 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTL 130 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 130 (211)
.+..++..+|++|+|+|+++.. ..+..+++..+.. .++| +++++||+|+.+
T Consensus 82 -~~~~~~~~aD~~ilVvda~~g~--~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 -NMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQ------IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp -HHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCCEEEEEECGGGCS
T ss_pred -HHHhhHhhCCEEEEEEECCCCC--CHHHHHHHHHHHH------cCCCeEEEEEECcccCC
Confidence 4667788899999999998843 2445555543322 1278 789999999975
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=3.5e-20 Score=146.79 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-------ccc----------------------ccee-------------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-------CTS----------------------LKEN------------- 46 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-------~~t----------------------~~~~------------- 46 (211)
...++|+++|.+|||||||+|+|++..+.+. .|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3467999999999999999999998876311 122 0000
Q ss_pred ----------eEEE--Eec-CccEEEEECCCch-------------hhhhhhHHHhhhcCCEEE-EEEeCCCchhhHHHH
Q psy4433 47 ----------VGNF--TYE-KKNIKIVDLPGED-------------RLRNKFFDQYKSSAKGIV-YVLDSSTVQKTLRDV 99 (211)
Q Consensus 47 ----------~~~~--~~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~ 99 (211)
...+ ... ...+.+|||||.. .+.. +...|++.++.++ +|+|+++... ....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~v~d~~~~~~-~~~~ 181 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDA 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHH-HHHHHHTSTTEEEEEEEESSSCGG-GCHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHH-HHHHHHcCCCeEEEEEecCCcchh-hhHH
Confidence 0001 111 2589999999963 3444 6777888888776 7899977432 1222
Q ss_pred HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeec
Q psy4433 100 AESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFS 179 (211)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (211)
..++. .+.. .+.|+++|+||+|+.+..... .+.+...+ .
T Consensus 182 ~~~~~-~~~~-----~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~---------------------------------~ 220 (299)
T 2aka_B 182 LKIAK-EVDP-----QGQRTIGVITKLDLMDEGTDA--RDVLENKL---------------------------------L 220 (299)
T ss_dssp HHHHH-HHCT-----TCSSEEEEEECGGGSCTTCCC--HHHHTTCS---------------------------------S
T ss_pred HHHHH-HhCC-----CCCeEEEEEEccccCCCCchH--HHHHhCCc---------------------------------C
Confidence 22222 2221 238999999999997654311 11111000 0
Q ss_pred CC-CCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 180 DL-YNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 180 ~~-~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+ ....+++++||++|+| +++++++|.+
T Consensus 221 ~~~~~~~~v~~~SA~~~~g---i~~l~~~l~~ 249 (299)
T 2aka_B 221 PLRRGYIGVVNRSQKDIDG---KKDITAALAA 249 (299)
T ss_dssp CCTTCEEECCCCCCBCTTS---CBCHHHHHHH
T ss_pred cCCCCcEEEECCChhhccc---cccHHHHHHH
Confidence 00 0125778999999999 9999998753
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.5e-21 Score=165.35 Aligned_cols=116 Identities=24% Similarity=0.260 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc--cc--------------------------------ccccccceeeEEEEec
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK--YF--------------------------------ESCTSLKENVGNFTYE 53 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 53 (211)
.+..++|+++|.+++|||||+++|+... .. ....|+......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996421 00 0012333334445566
Q ss_pred CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCch---hh--HHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQ---KT--LRDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.+||||||+.|... +..++..+|++|+|+|+++.. .. ..+..+.+..+.. .++| +++|+||+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~-~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiD 326 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLD 326 (592)
T ss_dssp -----CCEEESSSEEEEE-CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHHHHH-HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccc
Confidence 678999999999998874 555677899999999998632 00 1223333333222 1255 999999999
Q ss_pred ccC
Q psy4433 128 QTL 130 (211)
Q Consensus 128 l~~ 130 (211)
+.+
T Consensus 327 l~~ 329 (592)
T 3mca_A 327 LMS 329 (592)
T ss_dssp GGT
T ss_pred ccc
Confidence 975
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=1.1e-18 Score=131.20 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-cccccee--eEEEEecCccEEEEECCCch----------hhhhhhHHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-CTSLKEN--VGNFTYEKKNIKIVDLPGED----------RLRNKFFDQ 75 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~t~~~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 75 (211)
.+..+|+++|++|||||||+++|++..+... .|+.+.. ...+.+++ .+.+|||||+. .++. ....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~~ 101 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQR-ALGE 101 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHH-HHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHH-HHHH
Confidence 4567999999999999999999998764222 2333322 23445555 78999999984 2333 2334
Q ss_pred hh---hcCCEEEEEEeCCCchhhHH-HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhh
Q psy4433 76 YK---SSAKGIVYVLDSSTVQKTLR-DVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRT 151 (211)
Q Consensus 76 ~~---~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 151 (211)
++ ..++++++++|++++.+... ....+ +.. .++|+++|+||+|+............+...+..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---- 168 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW----AVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---- 168 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHH----HHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG----
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHH----HHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh----
Confidence 44 46899999999987544222 12222 211 238999999999987432211111112111110
Q ss_pred cccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 152 KSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+.++++||+++.| +++++++|.+
T Consensus 169 -----------------------------~~~~~~~~~~Sal~~~~---~~~l~~~l~~ 195 (210)
T 1pui_A 169 -----------------------------FNGDVQVETFSSLKKQG---VDKLRQKLDT 195 (210)
T ss_dssp -----------------------------GCSCEEEEECBTTTTBS---HHHHHHHHHH
T ss_pred -----------------------------cCCCCceEEEeecCCCC---HHHHHHHHHH
Confidence 01126778999999999 9999999875
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=8.1e-19 Score=157.47 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=103.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc-------ccc--c--------c--cccceeeEEEEecCccEEEEECCCchhh
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSK-------YFE--S--------C--TSLKENVGNFTYEKKNIKIVDLPGEDRL 68 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~-------~~~--~--------~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 68 (211)
.++.++|+++|++++|||||+++|++.. +.. . . .|+......+..++..+.+||||||++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4566899999999999999999998631 000 0 0 1222222233444569999999999999
Q ss_pred hhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCCccCCCCH-HHHHHHHHHHHH
Q psy4433 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQDQTLAKSS-SVVKTLLQKELN 146 (211)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~l~~~~~ 146 (211)
.. ....++..+|++|+|+|+++.. ..+..+++..+.. . ++| +++|+||+|+.+.... +.+.+++.+.+.
T Consensus 373 ~~-~mi~gas~AD~aILVVDAtdGv--~~QTrEhL~ll~~----l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 373 VK-NMITGAAQMDGAILVVAATDGP--MPQTREHILLGRQ----V--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HH-HHHHTSCCCSEEEEEEETTTCS--CTTHHHHHHHHHH----H--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHhhCCEEEEEEcCCccC--cHHHHHHHHHHHH----c--CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 88 4667788899999999998843 2344455543322 1 278 7899999999753211 112222222222
Q ss_pred HHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecC--------CCccchHHHHHHHhh
Q psy4433 147 LVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDS--------ASEYDVEQLQDWMVT 210 (211)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg--------~g~~~i~~l~~~i~~ 210 (211)
.... . +..++++++||++| +| +++|+++|.+
T Consensus 444 ~~G~------~------------------------~~~vp~IpvSAktG~ng~~~w~eG---I~eLleaL~~ 482 (1289)
T 3avx_A 444 QYDF------P------------------------GDDTPIVRGSALKALEGDAEWEAK---ILELAGFLDS 482 (1289)
T ss_dssp HTTS------C------------------------TTTCCEEECCSTTTTTCCHHHHHH---HHHHHHHHHH
T ss_pred hccc------c------------------------ccceeEEEEEeccCCCCCcccccc---chhhHhHHhh
Confidence 1000 0 11368899999999 57 8999998865
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=1.8e-18 Score=151.00 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=89.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--ccc-------------------ccccccceeeEEEEecCccEEEEECCCch
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYS--KYF-------------------ESCTSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
..+..+|+++|++|+|||||+++|+.. .+. ...+|+......+.+++..+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 345679999999999999999999841 110 11245555566677788899999999999
Q ss_pred hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy4433 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
.|.. .+..+++.+|++|+|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 89 df~~-~~~~~l~~aD~~ilVvDa~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~-~~~~~~~l~~~l 157 (691)
T 1dar_A 89 DFTI-EVERSMRVLDGAIVVFDSSQGVE--PQSETVWRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQERL 157 (691)
T ss_dssp TCHH-HHHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHHHTT
T ss_pred chHH-HHHHHHHHCCEEEEEEECCCCcc--hhhHHHHHHHHH------cCCCEEEEEECCCcccCC-HHHHHHHHHHHh
Confidence 9888 57788889999999999988544 233344444432 238999999999998553 444444454433
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=1e-18 Score=148.19 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--c------c---------cc--------ccccceeeEEEEecCccEEEEECC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK--Y------F---------ES--------CTSLKENVGNFTYEKKNIKIVDLP 63 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~--~------~---------~~--------~~t~~~~~~~~~~~~~~~~i~D~~ 63 (211)
.+..+|+++|++|+|||||+++|+... . . .. ..|+......+.+++..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 456899999999999999999998631 1 0 00 012223344567777799999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy4433 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
|+..|.. .+..++..+|++|+|+|+++... .+....+.... . .++|+++|+||+|+.... ..+..+.+.+
T Consensus 91 G~~df~~-~~~~~l~~aD~~IlVvDa~~g~~--~~t~~~~~~~~-~-----~~ipiivviNK~Dl~~~~-~~~~~~~i~~ 160 (529)
T 2h5e_A 91 GHEDFSE-DTYRTLTAVDCCLMVIDAAKGVE--DRTRKLMEVTR-L-----RDTPILTFMNKLDRDIRD-PMELLDEVEN 160 (529)
T ss_dssp CSTTCCH-HHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHT-T-----TTCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred CChhHHH-HHHHHHHHCCEEEEEEeCCccch--HHHHHHHHHHH-H-----cCCCEEEEEcCcCCcccc-HHHHHHHHHH
Confidence 9999888 46778889999999999987533 23333333332 1 238999999999998654 3344455555
Q ss_pred HHH
Q psy4433 144 ELN 146 (211)
Q Consensus 144 ~~~ 146 (211)
.+.
T Consensus 161 ~l~ 163 (529)
T 2h5e_A 161 ELK 163 (529)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.1e-17 Score=145.57 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc-------------cc--------ccccceeeEEEEecCccEEEEECCCchh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF-------------ES--------CTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~-------------~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+..+|+++|+.|+|||||+++|++.... .. ..++......+.+++..+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 34578999999999999999999842211 00 1233334445566666999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy4433 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
|.. .+..+++.+|++++|+|+++... .+...++..+.. .++|+++|+||+|+. .......+.+.+.+.
T Consensus 87 f~~-~~~~~l~~ad~~ilVvD~~~g~~--~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 FVG-EIRGALEAADAALVAVSAEAGVQ--VGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp GHH-HHHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred hHH-HHHHHHhhcCcEEEEEcCCcccc--hhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 988 57778888999999999877433 344455555443 138999999999998 344555555555443
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=3.4e-18 Score=133.15 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecCccEEEEECCCchhhhhhhHHHhh-------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYK------- 77 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------- 77 (211)
.+.++|+++|.+|+|||||+|+|++... ...++ |.......+.+++..+.+|||||+..+.. ....++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~-~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY-VNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE-ECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc-chHHHHHHHHHHH
Confidence 4679999999999999999999998775 33333 33445556777888999999999966533 122222
Q ss_pred --hcCCEEEEEEeCCCch--hhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 78 --SSAKGIVYVLDSSTVQ--KTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 78 --~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
.++|++++|+|++... ..-......+...... ....|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK----EIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhch----hhhcCEEEEEeCcccCCC
Confidence 2689999998876522 1111233333333221 111499999999999643
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.76 E-value=1.6e-17 Score=145.10 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Cccc-----------c--------cccccceeeEEEEecCccEEEEECCCchh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY--SKYF-----------E--------SCTSLKENVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~--~~~~-----------~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
.+..+|+++|.+|+|||||+++|+. +.+. . ...|+......+.+++..+++|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3457999999999999999999984 2211 0 11344445556777888999999999999
Q ss_pred hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHH
Q psy4433 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKEL 145 (211)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~ 145 (211)
+.. .+..+++.+|++++|+|+++... .+....|..+.. .++|+++|+||+|+.... .....+.+.+.+
T Consensus 88 f~~-~~~~~l~~aD~~llVvDa~~g~~--~~~~~~~~~~~~------~~~p~ilviNK~Dl~~~~-~~~~~~~l~~~l 155 (693)
T 2xex_A 88 FTV-EVERSLRVLDGAVTVLDAQSGVE--PQTETVWRQATT------YGVPRIVFVNKMDKLGAN-FEYSVSTLHDRL 155 (693)
T ss_dssp CCH-HHHHHHHHCSEEEEEEETTTBSC--HHHHHHHHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHCCEEEEEECCCCCCc--HHHHHHHHHHHH------cCCCEEEEEECCCccccc-hHHHHHHHHHHh
Confidence 888 47778888999999999988543 233344444432 138999999999998643 444444454443
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=4.7e-17 Score=142.29 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--cccc-------------------cccccceeeEEEEecC-------ccEEEE
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS--KYFE-------------------SCTSLKENVGNFTYEK-------KNIKIV 60 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~--~~~~-------------------~~~t~~~~~~~~~~~~-------~~~~i~ 60 (211)
.+..+|+++|+.|+|||||+++|+.. .+.. ...|+......+.+++ ..+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1110 1123333444566665 689999
Q ss_pred ECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHH
Q psy4433 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTL 140 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 140 (211)
||||+.+|.. .+..+++.+|++|+|+|+++... .+....|..... .++|+++|+||+|+.... .....+.
T Consensus 88 DTPG~~df~~-~~~~~l~~aD~aIlVvDa~~gv~--~qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~ 157 (704)
T 2rdo_7 88 DTPGHVDFTI-EVERSMRVLDGAVMVYCAVGGVQ--PQSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQ 157 (704)
T ss_pred eCCCccchHH-HHHHHHHHCCEEEEEEeCCCCCc--HHHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHH
Confidence 9999999988 57778889999999999987543 334444444432 238999999999997654 3444445
Q ss_pred HHHHH
Q psy4433 141 LQKEL 145 (211)
Q Consensus 141 l~~~~ 145 (211)
+...+
T Consensus 158 l~~~l 162 (704)
T 2rdo_7 158 IKTRL 162 (704)
T ss_pred HHHHh
Confidence 55444
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.7e-19 Score=143.44 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccc---------cccceeeEEE--EecCc--cEEEEECCCc-------hh
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK-YFESC---------TSLKENVGNF--TYEKK--NIKIVDLPGE-------DR 67 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~-~~~~~---------~t~~~~~~~~--~~~~~--~~~i~D~~G~-------~~ 67 (211)
...++|+++|++|+|||||+++|.+.. +...+ +|++.....+ ..++. .+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 345799999999999999999987643 22221 3444433333 23333 7899999999 55
Q ss_pred hhhhhHH-------HhhhcC-------------CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy4433 68 LRNKFFD-------QYKSSA-------------KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 68 ~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
+.. ++. .|++.+ ++++++++.+. ..+......+...+. .++|+++|+||+|
T Consensus 115 ~~~-i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKT-IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKAD 185 (361)
T ss_dssp -CC-THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECCS
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECCC
Confidence 554 444 555433 35666666422 113333333333332 2389999999999
Q ss_pred ccCCCC
Q psy4433 128 QTLAKS 133 (211)
Q Consensus 128 l~~~~~ 133 (211)
+.....
T Consensus 186 l~~~~e 191 (361)
T 2qag_A 186 TLTLKE 191 (361)
T ss_dssp SSCHHH
T ss_pred CCCHHH
Confidence 976543
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=2.2e-17 Score=144.26 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=77.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccc--cccccce----e-----eEE---------------------------
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFE--SCTSLKE----N-----VGN--------------------------- 49 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~t~~~----~-----~~~--------------------------- 49 (211)
....++|+++|.+|+|||||+|+|++..... ..|++.. . ..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4567899999999999999999999877432 2233310 0 001
Q ss_pred -------------------EEecC----ccEEEEECCCchhhh--hhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHH
Q psy4433 50 -------------------FTYEK----KNIKIVDLPGEDRLR--NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY 104 (211)
Q Consensus 50 -------------------~~~~~----~~~~i~D~~G~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 104 (211)
+.+.. ..+.+|||||..... ...+..+++.+|++++|+|++++.+ .... ..|.
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-~~e~-~~l~ 223 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-LGER-RYLE 223 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-HHHH-HHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-hhHH-HHHH
Confidence 11111 369999999986532 1145567889999999999987543 3222 3333
Q ss_pred HHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 105 VILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 105 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..+.. .+.|+++|+||+|+...
T Consensus 224 ~~l~~-----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 224 NYIKG-----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHTTT-----SCCCEEEEEECGGGGGG
T ss_pred HHHHh-----hCCCEEEEEECcccccc
Confidence 33322 23789999999999754
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=8.1e-18 Score=134.16 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-------ccc---ccee--------------------------------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFES-------CTS---LKEN-------------------------------- 46 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~-------~~t---~~~~-------------------------------- 46 (211)
...++|+++|.+|||||||+|+|++..+.+. .|+ +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3467999999999999999999998775211 120 0000
Q ss_pred ------------------eEEEEe---cCccEEEEECCCchh-------------hhhhhHHHhhhcCCEEEEEEeCCCc
Q psy4433 47 ------------------VGNFTY---EKKNIKIVDLPGEDR-------------LRNKFFDQYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 47 ------------------~~~~~~---~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~ 92 (211)
...+.+ .+..+.+|||||... +.. ....+++.+|++++|+|+++.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR-MVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH-HHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH-HHHHHHcCCCeEEEEEEecCc
Confidence 000111 234899999999753 344 566788899999999997432
Q ss_pred hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy4433 93 QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
.. .......+...+.. .+.|+++|+||+|+.....
T Consensus 181 ~~-~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 181 DL-ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp CS-TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC
T ss_pred ch-hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch
Confidence 21 00111122233322 2389999999999976543
No 183
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.73 E-value=1.9e-17 Score=135.27 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred cccceeeEEEEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCC----------chhhHHHHHHHHHHHHcCc
Q psy4433 41 TSLKENVGNFTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSST----------VQKTLRDVAESLYVILADP 110 (211)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 110 (211)
+|+|.....+.+++..+.+|||+|+++++. .|..|+++++++|+|+|+++ .. .+.++..|+..++...
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~-~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n-s~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERR-KWIQCFNDVTAIIFVVASSSYNMVIREDNQTN-RLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGG-GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB-HHHHHHHHHHHHHTCT
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhh-hhHhhccCCCEEEEEEECcccccccccccccc-hHHHHHHHHHHHHhcc
Confidence 477777777888888999999999999999 79999999999999999998 44 4999999999998765
Q ss_pred CcCCCCCcEEEEEeCCCcc
Q psy4433 111 QVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 111 ~~~~~~~p~iiv~nK~Dl~ 129 (211)
...+ +|+++|+||+||.
T Consensus 281 ~~~~--~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRT--ISVILFLNKQDLL 297 (402)
T ss_dssp TCSS--CCEEEEEECHHHH
T ss_pred cCCC--CeEEEEEEChhhh
Confidence 5555 9999999999985
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.72 E-value=7.5e-17 Score=132.72 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=98.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecC-ccEEEEECCCchhh-------hhhhHHHhhhcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEK-KNIKIVDLPGEDRL-------RNKFFDQYKSSA 80 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 80 (211)
..|+++|++|||||||++++++... ...+ .|..++.+.+.+++ ..+.+||+||.... ...+ ......+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f-l~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF-LRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH-HHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH-HHHHHHH
Confidence 4689999999999999999997643 2223 34455667777776 68999999997321 1111 1224569
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcC-cCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccc
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILAD-PQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDT 159 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (211)
+.+++++|++ ...+.+...+....... ..+.. .|.++|+||+|+... .....+.+.+.
T Consensus 237 ~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~--~P~ILVlNKlDl~~~----~~~~~l~~~l~------------- 295 (416)
T 1udx_A 237 RVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLR--RPSLVALNKVDLLEE----EAVKALADALA------------- 295 (416)
T ss_dssp SEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHH--SCEEEEEECCTTSCH----HHHHHHHHHHH-------------
T ss_pred HhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhc--CCEEEEEECCChhhH----HHHHHHHHHHH-------------
Confidence 9999999996 12233333333322211 11223 799999999999754 12222222222
Q ss_pred hhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 160 NDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
....+++.+||++++| +++|+++|.+
T Consensus 296 ----------------------~~g~~vi~iSA~~g~g---i~eL~~~i~~ 321 (416)
T 1udx_A 296 ----------------------REGLAVLPVSALTGAG---LPALKEALHA 321 (416)
T ss_dssp ----------------------TTTSCEEECCTTTCTT---HHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEECCCccC---HHHHHHHHHH
Confidence 0114678999999999 9999999865
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.71 E-value=5.1e-17 Score=127.00 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccccc--eeeEEEEecCccEEEEECCCchhhhh---h---hHHHh--
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF--ESCTSLK--ENVGNFTYEKKNIKIVDLPGEDRLRN---K---FFDQY-- 76 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~---~---~~~~~-- 76 (211)
...++|+++|.+|+|||||+|+|++..+. ...+.+. .....+..++..+.+|||||+..+.. . ....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 45789999999999999999999987753 2222222 22334556666899999999965431 0 11222
Q ss_pred hhcCCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy4433 77 KSSAKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
.+.+|++++|+|++.. + +... ..++..+..... .+...|+++|+||+|+....
T Consensus 117 ~~~~d~il~v~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-R-VDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-c-CCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcC
Confidence 2369999999888542 1 2222 233333221100 01116999999999997544
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=7.9e-16 Score=131.00 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=93.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-----------------ccccc--------cccceeeEEEEecCccEEEEECCC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK-----------------YFESC--------TSLKENVGNFTYEKKNIKIVDLPG 64 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~-----------------~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G 64 (211)
+..+|+|+|+.++|||||..+|+... ...++ .|+......+.|++..++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 34689999999999999999996210 01111 245555667889999999999999
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHH
Q psy4433 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~ 144 (211)
|.+|..+ ....++-+|++|+|+|+.+... .++...|..... .++|+++++||+|+.... .....+.+.+.
T Consensus 110 HvDF~~E-v~raL~~~DgAvlVvda~~GV~--~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~ 179 (548)
T 3vqt_A 110 HQDFSED-TYRVLTAVDSALVVIDAAKGVE--AQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIEQH 179 (548)
T ss_dssp GGGCSHH-HHHHHHSCSEEEEEEETTTBSC--HHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHhcCceEEEeecCCCcc--cccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhhhh
Confidence 9999996 6777888999999999988543 556666666654 239999999999997654 44445555555
Q ss_pred HH
Q psy4433 145 LN 146 (211)
Q Consensus 145 ~~ 146 (211)
+.
T Consensus 180 l~ 181 (548)
T 3vqt_A 180 LQ 181 (548)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=6.9e-17 Score=130.97 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc--------cccccccce-------------------eeEE-----------
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKY--------FESCTSLKE-------------------NVGN----------- 49 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~~~--------~~~~~t~~~-------------------~~~~----------- 49 (211)
..+..+|+++|.+|+|||||+++|...-. ....|+... ....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 34567999999999999999999974210 000000000 0000
Q ss_pred -----------EEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc
Q psy4433 50 -----------FTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118 (211)
Q Consensus 50 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 118 (211)
+...+..+.+|||||..... ......+|++++|+|+...+. .. .+. ..+.. .|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~----~~~~~~aD~vl~V~d~~~~~~-~~--------~l~-~~~~~--~p 219 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSE----VAVANMVDTFVLLTLARTGDQ-LQ--------GIK-KGVLE--LA 219 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHH----HHHHTTCSEEEEEEESSTTCT-TT--------TCC-TTSGG--GC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH----HHHHHhCCEEEEEECCCCCcc-HH--------HHH-HhHhh--cC
Confidence 01234589999999965432 233477999999999876432 10 011 11222 79
Q ss_pred EEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCc
Q psy4433 119 ILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE 198 (211)
Q Consensus 119 ~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~ 198 (211)
+++|+||+|+.+..........+.+.+...... ...+..+++.+||++|+|
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----------------------------~~~~~~~vi~iSA~~g~G- 270 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPR----------------------------EALWRPPVLTMSAVEGRG- 270 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTT----------------------------CCSCCCCEEEEBGGGTBS-
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhcccc----------------------------ccCCCCceEEEEcCCCCC-
Confidence 999999999975433333333444333221100 002336789999999999
Q ss_pred cchHHHHHHHhh
Q psy4433 199 YDVEQLQDWMVT 210 (211)
Q Consensus 199 ~~i~~l~~~i~~ 210 (211)
+++++++|.+
T Consensus 271 --i~~L~~~i~~ 280 (355)
T 3p32_A 271 --LAELWDTVER 280 (355)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999999865
No 188
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=119.78 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=99.4
Q ss_pred cCCCCEEEEEcCC-CCCHHHHHHHHHcCc-ccc--ccccc---ceeeE-EEEecCc------------------------
Q psy4433 8 KSSQKVVLLSGLS-LSGKTLLFARLVYSK-YFE--SCTSL---KENVG-NFTYEKK------------------------ 55 (211)
Q Consensus 8 ~~~~~ki~i~G~~-~~GKSsli~~l~~~~-~~~--~~~t~---~~~~~-~~~~~~~------------------------ 55 (211)
.+.++|++++||. ..=..+|+.++.... ..+ ..|.. |.-.+ .+.+++.
T Consensus 13 ~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~ 92 (227)
T 3l82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227)
T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------------
T ss_pred cCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhh
Confidence 4678999999986 344558999998755 211 11100 11011 1222221
Q ss_pred ----cEEEEE------CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHH---HHHHcCcC-cCCCCCcEEE
Q psy4433 56 ----NIKIVD------LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESL---YVILADPQ-VQSSRVNILV 121 (211)
Q Consensus 56 ----~~~i~D------~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~p~ii 121 (211)
++-... .+|+.++++ +|.+|+.++|++|||+|++|.+. ++ +.+.+ ..++.... +.+ +|++|
T Consensus 93 ~~~~k~~~~~~~~~~~~GGQ~klRp-lWr~Yy~~TdglIfVVDSsD~~R-~e-ak~EL~eL~~mL~ee~~L~g--apLLV 167 (227)
T 3l82_B 93 SAVNKMFSRHNEGDDQQGSRYSVIP-QIQKVCEVVDGFIYVANAEAHKR-HE-WQDEFSHIMAMTDPAFGSSG--RPLLV 167 (227)
T ss_dssp ------------------------C-CHHHHHHHCSEEEEEEECBTTCC-CC-HHHHHHHHHHHSCTTSSCSC--SCEEE
T ss_pred hhhhhcccccCCCccccCcHHHHHH-HHHHHhcCCCEEEEEeccccHhH-HH-HHHHHHHHHHHhcchhhhCC--CeEEE
Confidence 222233 348899999 89999999999999999998654 33 55555 44554432 344 99999
Q ss_pred EEeCC-CccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccc
Q psy4433 122 CCNKQ-DQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYD 200 (211)
Q Consensus 122 v~nK~-Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~ 200 (211)
++||. |++++....++.+.+. +. .+.+++.+..|||+||+|
T Consensus 168 lANKqqDlp~Ams~~EI~e~L~--L~---------------------------------~l~R~W~Iq~csA~TGeG--- 209 (227)
T 3l82_B 168 LSCISQGDVKRMPCFYLAHELH--LN---------------------------------LLNHPWLVQDTEAETLTG--- 209 (227)
T ss_dssp EEEESSTTSCBCCHHHHHHHTT--GG---------------------------------GGCSCEEEEEEETTTCTT---
T ss_pred EeCCCcCccCCCCHHHHHHHcC--Cc---------------------------------CCCCCEEEEEeECCCCcC---
Confidence 99995 8988888777665543 11 112449999999999999
Q ss_pred hHHHHHHHhh
Q psy4433 201 VEQLQDWMVT 210 (211)
Q Consensus 201 i~~l~~~i~~ 210 (211)
+.|.++||.+
T Consensus 210 L~EGLdWL~~ 219 (227)
T 3l82_B 210 FLNGIEWILE 219 (227)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.69 E-value=2.3e-17 Score=134.06 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccccc-ccc---------------eee--------------------------
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCT-SLK---------------ENV-------------------------- 47 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-t~~---------------~~~-------------------------- 47 (211)
.-++|+++|++|||||||+|+|++..+.+... +.+ ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999977522110 000 000
Q ss_pred -------------EEEEe---cCccEEEEECCCchhh-------------hhhhHHHhhhcCCEEEEEEeCCCchhhHHH
Q psy4433 48 -------------GNFTY---EKKNIKIVDLPGEDRL-------------RNKFFDQYKSSAKGIVYVLDSSTVQKTLRD 98 (211)
Q Consensus 48 -------------~~~~~---~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~ 98 (211)
..+.+ ....+.+|||||...+ .. +...|++++|++|+|+|+.+.......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~-~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIEN-MVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHH-HHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHH-HHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 01111 1237999999998664 44 677788999999999987543221122
Q ss_pred HHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC
Q psy4433 99 VAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS 133 (211)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 133 (211)
....+.. + ...+.|+++|+||+|+.....
T Consensus 192 ~~~l~~~-~-----~~~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 192 AIKISRE-V-----DPSGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHH-S-----CTTCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHH-h-----cccCCCEEEEEeCCccCCCcc
Confidence 2222222 1 123489999999999986543
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=1.2e-17 Score=135.45 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------cc----------------------ccee--------------
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC-------TS----------------------LKEN-------------- 46 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-------~t----------------------~~~~-------------- 46 (211)
..++|+++|.+|||||||+|+|++..+.+.. |+ +...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987763111 22 0000
Q ss_pred ---------eEEEE--ec-CccEEEEECCCch-------------hhhhhhHHHhhhcCC-EEEEEEeCCCchhhHHHHH
Q psy4433 47 ---------VGNFT--YE-KKNIKIVDLPGED-------------RLRNKFFDQYKSSAK-GIVYVLDSSTVQKTLRDVA 100 (211)
Q Consensus 47 ---------~~~~~--~~-~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~ 100 (211)
...+. .. ...+.+|||||.. .+.. +...|+..++ ++++|+|++.... -....
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiL~v~~a~~~~~-~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHH-HHHHHHTSTTEEEEEEEETTSCGG-GCHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHH-HHHHHHcCCCeEEEEEecCCCccc-hhHHH
Confidence 00111 11 3479999999963 3444 5666776655 4555667654221 11122
Q ss_pred HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecC
Q psy4433 101 ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180 (211)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (211)
.++..+ . ..+.|+++|+||+|+.+.... ..+.+... ... + .
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~--------~~~----------------------l-~ 228 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLENK--------LLP----------------------L-R 228 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHTTC--------SSC----------------------C-T
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHhCC--------ccc----------------------c-c
Confidence 222222 1 123899999999999755431 01111100 000 0 0
Q ss_pred CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 181 LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 181 ~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.....++.+||++|+| ++++++++.+
T Consensus 229 -~~~~~v~~~SA~~~~~---i~~l~~~l~~ 254 (353)
T 2x2e_A 229 -RGYIGVVNRSQKDIDG---KKDITAALAA 254 (353)
T ss_dssp -TCEEECCCCCHHHHHT---TCCHHHHHHH
T ss_pred -CCceEEEeCCcccccc---cccHHHHHHH
Confidence 0114678899999999 9999988753
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=7.6e-17 Score=132.27 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEE---------------------ecC---ccEEEEECCC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFT---------------------YEK---KNIKIVDLPG 64 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~---------------------~~~---~~~~i~D~~G 64 (211)
++|+++|.+|||||||+|+|++... ...+| |..++.+... +++ ..+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763 23333 3344444322 122 3799999999
Q ss_pred chhhhh---hhHH---HhhhcCCEEEEEEeCCCc
Q psy4433 65 EDRLRN---KFFD---QYKSSAKGIVYVLDSSTV 92 (211)
Q Consensus 65 ~~~~~~---~~~~---~~~~~~d~ii~v~d~~~~ 92 (211)
+..... .+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854211 0222 235789999999999874
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=126.39 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc--------cccccccc---------------------------eeeEEE----
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY--------FESCTSLK---------------------------ENVGNF---- 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~--------~~~~~t~~---------------------------~~~~~~---- 50 (211)
....|+++|++|||||||+|+|++... ...-|+.. +..+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 468999999999999999999986210 00001100 000000
Q ss_pred ----------EecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE
Q psy4433 51 ----------TYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL 120 (211)
Q Consensus 51 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 120 (211)
...+..+.++||||..... ......+|.+++|+|++.+.. .+... ..+ .. .|.+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~----~~l~~~~d~vl~V~d~~~~~~-~~~i~---~~i------l~--~~~i 216 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE----FAVADMVDMFVLLLPPAGGDE-LQGIK---RGI------IE--MADL 216 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH----HHHHTTCSEEEEEECCC----------------------CC--SCSE
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh----hhHHhhCCEEEEEEcCCcchh-HHHhH---HHH------Hh--cCCE
Confidence 1244588999999964222 223567999999999976432 11111 111 12 6889
Q ss_pred EEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccc
Q psy4433 121 VCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYD 200 (211)
Q Consensus 121 iv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~ 200 (211)
+|+||+|+.+..........+...+.. .... ...+..+++.+||++|+|
T Consensus 217 vVlNK~Dl~~~~~~~~~~~~l~~~l~~---~~~~-------------------------a~~~~~~vi~iSA~~g~G--- 265 (349)
T 2www_A 217 VAVTKSDGDLIVPARRIQAEYVSALKL---LRKR-------------------------SQVWKPKVIRISARSGEG--- 265 (349)
T ss_dssp EEECCCSGGGHHHHHHHHHHHHHHHTT---CC------------------------------CCCEEEECCTTTCTT---
T ss_pred EEEeeecCCCchhHHHHHHHHHHHHHh---cCcc-------------------------ccCCCceEEEEecCCCCC---
Confidence 999999996422111111222211110 0000 001125678899999999
Q ss_pred hHHHHHHHhh
Q psy4433 201 VEQLQDWMVT 210 (211)
Q Consensus 201 i~~l~~~i~~ 210 (211)
+++|+++|.+
T Consensus 266 i~~L~~~I~~ 275 (349)
T 2www_A 266 ISEMWDKMKD 275 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=4.6e-17 Score=129.13 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC-cccccc---------cccceeeEEEEec--Cc--cEEEEECCCc-------hhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS-KYFESC---------TSLKENVGNFTYE--KK--NIKIVDLPGE-------DRL 68 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~-~~~~~~---------~t~~~~~~~~~~~--~~--~~~i~D~~G~-------~~~ 68 (211)
-.++|+++|++|||||||+++|.+. .++... ++.......+.++ +. .+++|||+|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4579999999999999999998875 333221 2222222222222 22 7899999998 444
Q ss_pred hhhhHH-------Hhhhc-------------CCEEEEEEeCCCchhhHHHH-HHHHHHHHcCcCcCCCCCcEEEEEeCCC
Q psy4433 69 RNKFFD-------QYKSS-------------AKGIVYVLDSSTVQKTLRDV-AESLYVILADPQVQSSRVNILVCCNKQD 127 (211)
Q Consensus 69 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 127 (211)
.. +.. .+++. +++++++.+.+.. .++.. .+.+..+ . .+.|+++|+||.|
T Consensus 97 ~~-l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-~------~~~~iilV~~K~D 166 (301)
T 2qnr_A 97 KT-IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-H------NKVNIVPVIAKAD 166 (301)
T ss_dssp TT-HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-T------TTSCEEEEECCGG
T ss_pred HH-HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-H------hcCCEEEEEEeCC
Confidence 43 333 33332 2345555554321 02121 1222222 1 2279999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHH
Q psy4433 128 QTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDW 207 (211)
Q Consensus 128 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~ 207 (211)
+....+.....+.+.+.+.. ..+.++++||++| | +++++++
T Consensus 167 l~~~~e~~~~~~~~~~~~~~-----------------------------------~~~~~~e~Sa~~~-~---v~e~f~~ 207 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEE-----------------------------------HNIKIYHLPDAES-D---EDEDFKE 207 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHH-----------------------------------TTCCCCCCC-------------CHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------------------------------cCCeEEecCCccc-c---ccHHHHH
Confidence 97543322212222222221 1256788999999 8 9998877
Q ss_pred Hhh
Q psy4433 208 MVT 210 (211)
Q Consensus 208 i~~ 210 (211)
+.+
T Consensus 208 l~~ 210 (301)
T 2qnr_A 208 QTR 210 (301)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=6.1e-16 Score=131.79 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc----ccccccceeeE------------------------------------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYF----ESCTSLKENVG------------------------------------ 48 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~t~~~~~~------------------------------------ 48 (211)
...++|+++|.+|+|||||+|+|++..+. ...|++.....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998753 22233311100
Q ss_pred --EEEecC---ccEEEEECCCchh-----------hhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCc
Q psy4433 49 --NFTYEK---KNIKIVDLPGEDR-----------LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQV 112 (211)
Q Consensus 49 --~~~~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 112 (211)
.+++.+ ..+.+|||||+.. +.. ....++..+|++++|+|+++... ......++..+ ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~-~~~~~l~~aD~il~VvDa~~~~~-~~~~~~~l~~l-~~--- 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPA-VLRWFAERVDLIILLFDAHKLEI-SDEFSEAIGAL-RG--- 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHH-HHHHHHHHCSEEEEEEETTSCCC-CHHHHHHHHHT-TT---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHH-HHHHHHHhCCEEEEEEeCCcCCC-CHHHHHHHHHH-Hh---
Confidence 011111 2689999999864 444 56667888999999999977422 23333443332 22
Q ss_pred CCCCCcEEEEEeCCCccCCCCH
Q psy4433 113 QSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 113 ~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
.+.|+++|+||+|+....+.
T Consensus 217 --~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp --CGGGEEEEEECGGGSCHHHH
T ss_pred --cCCCEEEEEECCCccCHHHH
Confidence 23899999999999865433
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=5.7e-17 Score=128.65 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=96.6
Q ss_pred HHHHHHHcCccc-ccc-cccceeeEEEEec-CccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHH
Q psy4433 26 LLFARLVYSKYF-ESC-TSLKENVGNFTYE-KKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAES 102 (211)
Q Consensus 26 sli~~l~~~~~~-~~~-~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~ 102 (211)
+|+.+++.+.|. ..+ ||++..+. +... +..+.+||+ +++++. +++.+++++|++|+|+|++++..++.....|
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~-l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNL-LTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCE-ETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccce-eeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 678888888886 554 78885554 3332 238999999 888888 7889999999999999999876456777777
Q ss_pred HHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCC
Q psy4433 103 LYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLY 182 (211)
Q Consensus 103 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (211)
+..+.. .++|+++|+||+||.+.+..++..+ +.+.+. .
T Consensus 108 l~~~~~------~~~piilv~NK~DL~~~~~v~~~~~-~~~~~~-----------------------------------~ 145 (301)
T 1u0l_A 108 LVLAEK------NELETVMVINKMDLYDEDDLRKVRE-LEEIYS-----------------------------------G 145 (301)
T ss_dssp HHHHHH------TTCEEEEEECCGGGCCHHHHHHHHH-HHHHHT-----------------------------------T
T ss_pred HHHHHH------CCCCEEEEEeHHHcCCchhHHHHHH-HHHHHh-----------------------------------h
Confidence 665532 2389999999999975432211111 111111 0
Q ss_pred CcEEEEEEeeecCCCccchHHHHHHHh
Q psy4433 183 NQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 183 ~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
. ..+++|||++|+| ++++++++.
T Consensus 146 ~-~~~~~~SAktg~g---v~~lf~~l~ 168 (301)
T 1u0l_A 146 L-YPIVKTSAKTGMG---IEELKEYLK 168 (301)
T ss_dssp T-SCEEECCTTTCTT---HHHHHHHHS
T ss_pred h-CcEEEEECCCCcC---HHHHHHHhc
Confidence 1 4678999999999 999999875
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=1.2e-15 Score=135.86 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------------ccc-------cccccceeeEEEEec----------------C
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK------------YFE-------SCTSLKENVGNFTYE----------------K 54 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~----------------~ 54 (211)
+..+|+++|+.|+|||||+++|+... +.. ...|+......+.++ +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45689999999999999999998641 110 012343344444554 3
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
..+++|||||+.+|.. .+..+++.+|++|+|+|+++... .+ ....|..... .++|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~df~~-~~~~~l~~aD~ailVvDa~~g~~-~q-t~~~~~~~~~------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-EVTAALRVTDGALVVVDTIEGVC-VQ-TETVLRQALG------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSCH-HHHHHHHTCSEEEEEEETTTBSC-HH-HHHHHHHHHH------TTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhHH-HHHHHHHhCCEEEEEEeCCCCCC-HH-HHHHHHHHHH------cCCCeEEEEECCCcch
Confidence 4899999999999988 58888999999999999998654 32 3334444432 2389999999999974
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=2.3e-14 Score=115.61 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEecC-----------------ccEEEEECCCchhhhh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYEK-----------------KNIKIVDLPGEDRLRN 70 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~ 70 (211)
.++|+++|.+|||||||+|+|++..+ ...+| |+.++.+.+.+++ ..+.+|||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 47899999999999999999998764 33443 6667777777765 3699999999976432
Q ss_pred h------hHHHhhhcCCEEEEEEeCCC
Q psy4433 71 K------FFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 71 ~------~~~~~~~~~d~ii~v~d~~~ 91 (211)
. .+..+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 0 12335688999999999985
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.62 E-value=9.6e-16 Score=123.60 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------cc--cccccccc-------------------eeeE--E----------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS------KY--FESCTSLK-------------------ENVG--N---------- 49 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~------~~--~~~~~t~~-------------------~~~~--~---------- 49 (211)
.+...|+++|++|+|||||++.|.+. +. ....+... .+.. .
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 45678999999999999999999731 11 00001000 0000 0
Q ss_pred ----------EEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy4433 50 ----------FTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 50 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
+.+++..+.+|||||...... .....+|++++|+|++.... ++.... .. . +.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----~~~~~aD~vl~Vvd~~~~~~-~~~l~~---~~------~--~~p~ 197 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET----EVARMVDCFISLQIAGGGDD-LQGIKK---GL------M--EVAD 197 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----HHHTTCSEEEEEECC-------CCCCH---HH------H--HHCS
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH----HHHHhCCEEEEEEeCCccHH-HHHHHH---hh------h--cccC
Confidence 013355899999999876544 13578999999999975322 110000 00 1 2688
Q ss_pred EEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCcc
Q psy4433 120 LVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEY 199 (211)
Q Consensus 120 iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~ 199 (211)
++|+||+|+.+........+.+.+.+... ... .-.+..+++.+||++|+|
T Consensus 198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~---~~~-------------------------~~~~~~~vi~iSA~~g~g-- 247 (341)
T 2p67_A 198 LIVINKDDGDNHTNVAIARHMYESALHIL---RRK-------------------------YDEWQPRVLTCSALEKRG-- 247 (341)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHS---CCS-------------------------BTTBCCEEEECBGGGTBS--
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhc---ccc-------------------------ccCCCCcEEEeeCCCCCC--
Confidence 99999999975422222222222222110 000 001225778999999999
Q ss_pred chHHHHHHHhh
Q psy4433 200 DVEQLQDWMVT 210 (211)
Q Consensus 200 ~i~~l~~~i~~ 210 (211)
+++++++|.+
T Consensus 248 -i~~L~~~l~~ 257 (341)
T 2p67_A 248 -IDEIWHAIID 257 (341)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 9999999864
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.60 E-value=2.3e-15 Score=113.89 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-------ccccc----------ceeeEEE------------------EecC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFE-------SCTSL----------KENVGNF------------------TYEK 54 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 54 (211)
+..+|+++|.+|||||||+++|+...... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998642110 00100 1111111 1123
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC--C
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA--K 132 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~ 132 (211)
..+.+|||+|+... + ..+....+.+++|+|+.+..... ..+ .... . .|+++|+||+|+.+. .
T Consensus 109 ~d~iiidt~G~~~~-~---~~~~~~~~~~i~vvd~~~~~~~~---~~~-~~~~------~--~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-P---VDFDLGENYRVVMVSVTEGDDVV---EKH-PEIF------R--VADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSG-G---GGCCCSCSEEEEEEEGGGCTTHH---HHC-HHHH------H--TCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCC-C---chhccccCcEEEEEeCCCcchhh---hhh-hhhh------h--cCCEEEEecccCCcchhh
Confidence 37889999996111 1 11112478899999997743211 111 1111 1 789999999999643 2
Q ss_pred CHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 133 SSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...+..+.+.+ + ....+++++||++|+| +++++++|.+
T Consensus 173 ~~~~~~~~~~~-~------------------------------------~~~~~i~~~Sa~~g~g---i~~l~~~l~~ 210 (221)
T 2wsm_A 173 DVEKMKADAKL-I------------------------------------NPRAKIIEMDLKTGKG---FEEWIDFLRG 210 (221)
T ss_dssp CHHHHHHHHHH-H------------------------------------CTTSEEEECBTTTTBT---HHHHHHHHHH
T ss_pred HHHHHHHHHHH-h------------------------------------CCCCeEEEeecCCCCC---HHHHHHHHHH
Confidence 33333222221 0 1125789999999999 9999999864
No 200
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=117.86 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=77.8
Q ss_pred CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHH---HHHcCcC-cCCCCCcEEEEEeC-CCccCCCCHHH
Q psy4433 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLY---VILADPQ-VQSSRVNILVCCNK-QDQTLAKSSSV 136 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~p~iiv~nK-~Dl~~~~~~~~ 136 (211)
.+|+.++++ +|.+|+.++|++|||+|++|.+. ++ +.+.+. .++.+.. +.+ +|++|++|| .|++++....+
T Consensus 194 ~GGQ~~lRp-lWr~Yy~~tdglIfVVDSsDreR-le-ak~EL~eL~~mL~e~~~l~~--apLLVfANKkQDlp~Ams~~E 268 (312)
T 3l2o_B 194 QGSRYSVIP-QIQKVCEVVDGFIYVANAEAHKR-HE-WQDEFSHIMAMTDPAFGSSG--RPLLVLSCISQGDVKRMPCFY 268 (312)
T ss_dssp ---CCCCCH-HHHHHHHHCSEEEECCBCBTTCC-CC-HHHHHHHHHHHHCHHHHCTT--CCEEEEEEESSTTSCBCCHHH
T ss_pred CCCHHHHHH-HHHHHhcCCCEEEEEecCCcHhH-HH-HHHHHHHHHHHhcchhhcCC--CeEEEEeCCcccccCCCCHHH
Confidence 468899999 89999999999999999999765 33 433333 4443321 244 999999996 69988888776
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 137 VKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+.+.+. +. .+.+++.+..|||+||+| +.|.++||.+
T Consensus 269 I~e~L~--L~---------------------------------~l~r~W~Iq~csA~tGeG---L~EGldWL~~ 304 (312)
T 3l2o_B 269 LAHELH--LN---------------------------------LLNHPWLVQDTEAETLTG---FLNGIEWILE 304 (312)
T ss_dssp HHHHTT--GG---------------------------------GGCSCEEEEEEETTTCTT---HHHHHHHHHH
T ss_pred HHHHcC--Cc---------------------------------cCCCcEEEEecccCCCcC---HHHHHHHHHH
Confidence 665543 11 012448999999999999 9999999975
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.9e-15 Score=118.39 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCccEEEEECCCchhh-------hhhhHHHhhhcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKKNIKIVDLPGEDRL-------RNKFFDQYKSSA 80 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 80 (211)
..+|+++|.||||||||+|+|++.+. ...+ .|..++.+.+.+++..+.++||||...- ..+++ ...+.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l-~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVI-AVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHH-HHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHH-HHHHhc
Confidence 45899999999999999999998653 3444 4667788889999999999999997321 11122 345679
Q ss_pred CEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 81 KGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 81 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
|++++|+|+++|....+.+...+...- ..+.+ .|.++++||+|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~--k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNK--TPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETC--CCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhh--Hhhcc--CChhhhhhHhhhh
Confidence 999999999987654555555444332 12333 7889999999974
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=1.2e-14 Score=112.68 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=41.7
Q ss_pred cEEEEECCCchhhhhh-----hHHHhhhcCCEEEEEEeCCCchhhHH--HHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy4433 56 NIKIVDLPGEDRLRNK-----FFDQYKSSAKGIVYVLDSSTVQKTLR--DVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
.+.+|||||+...... .....+.. +++++++|++....... ........... . .++|+++|+||+|+
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~--~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---R--LGATTIPALNKVDL 183 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---H--HTSCEEEEECCGGG
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---c--cCCCeEEEEecccc
Confidence 7999999999765430 01123455 89999999865332121 11111111111 1 12899999999999
Q ss_pred cCCC
Q psy4433 129 TLAK 132 (211)
Q Consensus 129 ~~~~ 132 (211)
....
T Consensus 184 ~~~~ 187 (262)
T 1yrb_A 184 LSEE 187 (262)
T ss_dssp CCHH
T ss_pred cccc
Confidence 7543
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.57 E-value=2.1e-14 Score=116.49 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=57.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--ccceeeEEEEec---------------------CccEEEEECCCchh
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKY-FESCT--SLKENVGNFTYE---------------------KKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--t~~~~~~~~~~~---------------------~~~~~i~D~~G~~~ 67 (211)
++|+++|.+|||||||+|+|++... ...+| |+.++.+...+. +..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997652 23332 555666655443 23699999999865
Q ss_pred h-------hhhhHHHhhhcCCEEEEEEeCCC
Q psy4433 68 L-------RNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 68 ~-------~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
. ... +..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~-fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQ-FLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHH-HHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHH-HHHHHHhCCEEEEEEECCC
Confidence 3 221 3335788999999999975
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=4.3e-15 Score=128.77 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=85.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--Cccc-----------ccc--------cccceeeEEEEecCccEEEEECCCchhhhh
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY--SKYF-----------ESC--------TSLKENVGNFTYEKKNIKIVDLPGEDRLRN 70 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~--~~~~-----------~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 70 (211)
.+|+|+|+.++|||||..+|+. +... .++ .|+......+.+++..++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4689999999999999999973 1110 011 234444455778888999999999999999
Q ss_pred hhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCH
Q psy4433 71 KFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSS 134 (211)
Q Consensus 71 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 134 (211)
+ ....++-+|++|+|+|+.+.-. .++...|...... ++|.++++||+|+......
T Consensus 83 E-v~raL~~~DgavlVVDa~~GV~--~qT~~v~~~a~~~------~lp~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 83 E-VYRSLSVLDGAILLISAKDGVQ--AQTRILFHALRKM------GIPTIFFINKIDQNGIDLS 137 (638)
T ss_dssp H-HHHHHTTCSEEECCEESSCTTC--SHHHHHHHHHHHH------TCSCEECCEECCSSSCCSH
T ss_pred H-HHHHHHHhCEEEEEEeCCCCCc--HHHHHHHHHHHHc------CCCeEEEEeccccccCCHH
Confidence 6 6677888999999999987443 4455555655432 2899999999999876543
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=123.60 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccc--------cccceeeEEEEe--cCc--cEEEEECCCchhhhh------h
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYF-ESC--------TSLKENVGNFTY--EKK--NIKIVDLPGEDRLRN------K 71 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~-~~~--------~t~~~~~~~~~~--~~~--~~~i~D~~G~~~~~~------~ 71 (211)
.++|+++|++|||||||+++|++..+. ... +|+......+.+ .+. .+++||++|...... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 568999999999999999999987652 211 222222112212 222 689999999865311 0
Q ss_pred h-------HHH-----------hhhcCC--EEEEEEeCCCchhhHHHHH-HHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 72 F-------FDQ-----------YKSSAK--GIVYVLDSSTVQKTLRDVA-ESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 72 ~-------~~~-----------~~~~~d--~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
+ ... ++.+++ +++++.+.+. ..+.... .++..+ . .++|+++|+||+|+..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L-~------~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRL-H------EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHH-T------TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHH-h------ccCcEEEEEEcccCcc
Confidence 1 111 223344 4455444431 1122222 333333 2 1389999999999976
Q ss_pred CCCHHHHHHHHHHHH
Q psy4433 131 AKSSSVVKTLLQKEL 145 (211)
Q Consensus 131 ~~~~~~~~~~l~~~~ 145 (211)
..........+.+.+
T Consensus 182 ~~ev~~~k~~i~~~~ 196 (418)
T 2qag_C 182 PEECQQFKKQIMKEI 196 (418)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 544433333343333
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=5e-14 Score=123.02 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccc-------------------------------------------
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLK------------------------------------------- 44 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~------------------------------------------- 44 (211)
.-++|+++|.+++|||||+|+|++..+.+.. +++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4579999999999999999999997652111 1100
Q ss_pred -----e--eeEE--EEecCc-cEEEEECCCchh-------------hhhhhHHHhh-hcCCEEEEEEeCCCchhhHHHHH
Q psy4433 45 -----E--NVGN--FTYEKK-NIKIVDLPGEDR-------------LRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVA 100 (211)
Q Consensus 45 -----~--~~~~--~~~~~~-~~~i~D~~G~~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 100 (211)
+ .... +...+. .+.++||||... +.. +...|+ ..+|++++|+|++.... .....
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~-lv~~yi~~~aDlIL~VVDAs~~~~-~~d~l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLA-NSDAL 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHH-HHHHHHTSTTEEEEEEEETTSCSS-SCHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHH-HHHHHHhcCCcEEEEEEcCCCCcc-hhHHH
Confidence 0 0001 112222 689999999643 222 344454 46899999999986322 11111
Q ss_pred HHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecC
Q psy4433 101 ESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSD 180 (211)
Q Consensus 101 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (211)
. +...+.. .+.|+++|+||+|+........ .+.. . .... +
T Consensus 208 ~-ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~---~il~--~-----~~~~----------------------l-- 247 (772)
T 3zvr_A 208 K-IAKEVDP-----QGQRTIGVITKLDLMDEGTDAR---DVLE--N-----KLLP----------------------L-- 247 (772)
T ss_dssp H-HHHHHCT-----TCSSEEEEEECTTSSCTTCCSH---HHHT--T-----CSSC----------------------C--
T ss_pred H-HHHHHHh-----cCCCEEEEEeCcccCCcchhhH---HHHH--H-----Hhhh----------------------h--
Confidence 2 2222221 2389999999999986543211 1110 0 0000 0
Q ss_pred CCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 181 LYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 181 ~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
......++.+||++|+| +++|.+.|.+
T Consensus 248 ~lg~~~VV~iSA~~G~G---vdeL~eaI~~ 274 (772)
T 3zvr_A 248 RRGYIGVVNRSQKDIDG---KKDITAALAA 274 (772)
T ss_dssp SSCEEECCCCCCEESSS---SEEHHHHHHH
T ss_pred hccCCceEEeccccccc---chhHHHHHHH
Confidence 00125678899999999 9999888753
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.51 E-value=2.9e-13 Score=118.68 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=85.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc--------cc-----ccc--------cccceeeEEEEec-------CccEEEEECC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSK--------YF-----ESC--------TSLKENVGNFTYE-------KKNIKIVDLP 63 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~--------~~-----~~~--------~t~~~~~~~~~~~-------~~~~~i~D~~ 63 (211)
.+|+|+|+.++|||||..+|+... .. .++ .|+......+.|+ +..++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999999997311 10 000 1232333444554 3479999999
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHH
Q psy4433 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQK 143 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~ 143 (211)
||.+|..+ ....++-+|++|+|+|+.+.-. .++...|....+. ++|.++++||+|+.... .....+++..
T Consensus 94 GHvDF~~E-v~~aLr~~DgavlvVDaveGV~--~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~-~~~~~~ei~~ 163 (709)
T 4fn5_A 94 GHVDFTIE-VERSLRVLDGAVVVFCGTSGVE--PQSETVWRQANKY------GVPRIVYVNKMDRQGAN-FLRVVEQIKK 163 (709)
T ss_dssp SCTTCHHH-HHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHHH------TCCEEEEEECSSSTTCC-HHHHHHHHHH
T ss_pred CCcccHHH-HHHHHHHhCeEEEEEECCCCCc--hhHHHHHHHHHHc------CCCeEEEEccccccCcc-HHHHHHHhhh
Confidence 99999996 6677888999999999987543 4566666666542 29999999999997654 3334444444
Q ss_pred HH
Q psy4433 144 EL 145 (211)
Q Consensus 144 ~~ 145 (211)
.+
T Consensus 164 ~l 165 (709)
T 4fn5_A 164 RL 165 (709)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.45 E-value=4.8e-13 Score=101.33 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
.+.++|+++|.+|||||||+++|+...+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999997644
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=2.6e-13 Score=109.14 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------Ccc--cccccccce-----------------eeEE--------------
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY------SKY--FESCTSLKE-----------------NVGN-------------- 49 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~------~~~--~~~~~t~~~-----------------~~~~-------------- 49 (211)
.+...++++|++|||||||++.+.+ ++. ....++... ....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999983 221 000010000 0000
Q ss_pred ----------EEecCccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE
Q psy4433 50 ----------FTYEKKNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI 119 (211)
Q Consensus 50 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 119 (211)
+...+..+.++||||...-.. .....+|.+++++|+..... .+.... .... .|.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----~v~~~~d~vl~v~d~~~~~~-~~~i~~---------~i~~--~~~ 196 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET----AVADLTDFFLVLMLPGAGDE-LQGIKK---------GIFE--LAD 196 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----HHHTTSSEEEEEECSCC-------CCT---------THHH--HCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh----hHHhhCCEEEEEEcCCCccc-HHHHHH---------HHhc--ccc
Confidence 112456899999999864322 22467999999999864321 111100 0111 466
Q ss_pred EEEEeCCCccCCCC-HHHHHHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCc
Q psy4433 120 LVCCNKQDQTLAKS-SSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASE 198 (211)
Q Consensus 120 iiv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~ 198 (211)
++++||+|+..... .....+.+...+.. .... ...+..+++.+||++|+|
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l---~~~~-------------------------~~~~~~~vl~~Sal~g~g- 247 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHI---LTPP-------------------------SATWTPPVVTISGLHGKG- 247 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTT---BCCS-------------------------BTTBCCCEEEEBTTTTBS-
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHh---cccc-------------------------ccCCCCCEEEEeCCCCCC-
Confidence 77889999753221 11111222111110 0000 000123567799999999
Q ss_pred cchHHHHHHHhh
Q psy4433 199 YDVEQLQDWMVT 210 (211)
Q Consensus 199 ~~i~~l~~~i~~ 210 (211)
+++|+++|.+
T Consensus 248 --i~~L~~~I~~ 257 (337)
T 2qm8_A 248 --LDSLWSRIED 257 (337)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999999865
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=7.4e-12 Score=102.03 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=55.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cccceeeEEEEecCc-----------------cEEEEECCCc
Q psy4433 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKY-FESC--TSLKENVGNFTYEKK-----------------NIKIVDLPGE 65 (211)
Q Consensus 6 ~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~-~~~~--~t~~~~~~~~~~~~~-----------------~~~i~D~~G~ 65 (211)
.+-....+|+++|++|||||||+|+|++... ...+ +|..++.+.+.+.+. .+.+|||||+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 3445678999999999999999999998765 2233 355667777766542 4999999998
Q ss_pred hhhhh------hhHHHhhhcCCEEEEEEeCCC
Q psy4433 66 DRLRN------KFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 66 ~~~~~------~~~~~~~~~~d~ii~v~d~~~ 91 (211)
..... ..+..+++.+|++++|+|+++
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 76443 124556788999999999975
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=6e-10 Score=93.67 Aligned_cols=111 Identities=27% Similarity=0.325 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH------cCcc--ccc--c-cc-----------cceeeEE-----------------E
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLV------YSKY--FES--C-TS-----------LKENVGN-----------------F 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~------~~~~--~~~--~-~t-----------~~~~~~~-----------------~ 50 (211)
+...|+++|++||||||++++|. +.+. ... + +. .+..+.. +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998 3321 000 0 00 0011000 0
Q ss_pred EecCccEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcE-EEEEe
Q psy4433 51 TYEKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNI-LVCCN 124 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n 124 (211)
..++..+.++||||.......++.. . ...+|.+++|+|+......... ...+... +|+ .+|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-a~~~~~~----------~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDK----------VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-HHHHHHH----------HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-HHHHHhh----------cCceEEEEe
Confidence 1144589999999985321111111 1 1268999999999875432222 1222211 564 88999
Q ss_pred CCCccCC
Q psy4433 125 KQDQTLA 131 (211)
Q Consensus 125 K~Dl~~~ 131 (211)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998744
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=1.8e-11 Score=99.54 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC-----cc--cccccccceeeEEEEecCccEEEEECCCchhhh-------hhhHHHh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS-----KY--FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFDQY 76 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~-----~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~ 76 (211)
..+++++|.+|+|||||+|+|++. .. ....|.++.....+.++. .+.++||||..... .+....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999975 22 233344433444444443 58999999974221 1122223
Q ss_pred h--hcCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHH
Q psy4433 77 K--SSAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 77 ~--~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~ 146 (211)
+ ...+.+++++|+... ...+.. .+. +...+.|+++++||+|..+....+...+.+.+++.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~-----l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDY-----IKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEE-----EESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEE-----ccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 2 568999999998431 000100 111 22234899999999999887777777777777665
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.11 E-value=5.6e-11 Score=94.13 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=67.7
Q ss_pred chhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHH
Q psy4433 65 EDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKE 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~ 144 (211)
++++.. +.+.++.++|.+++|+|++++..++..+.+|+..+.. .++|+++|+||+||.+...... .+.+.+.
T Consensus 66 ~er~~~-l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNL-LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKIDLLNEEEKKE-LERWISI 137 (302)
T ss_dssp CCCSCE-EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCGGGCCHHHHHH-HHHHHHH
T ss_pred CChHHH-HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcccCCCccccHH-HHHHHHH
Confidence 455555 5566889999999999999876447666777765432 2389999999999975431111 1111111
Q ss_pred HHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHh
Q psy4433 145 LNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMV 209 (211)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~ 209 (211)
+.. ..++++++||++|+| +++|++++.
T Consensus 138 ~~~-----------------------------------~g~~~~~~SA~~g~g---i~~L~~~l~ 164 (302)
T 2yv5_A 138 YRD-----------------------------------AGYDVLKVSAKTGEG---IDELVDYLE 164 (302)
T ss_dssp HHH-----------------------------------TTCEEEECCTTTCTT---HHHHHHHTT
T ss_pred HHH-----------------------------------CCCeEEEEECCCCCC---HHHHHhhcc
Confidence 110 115789999999999 999998875
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=6.3e-10 Score=90.41 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------c--cccccccceeeEEEEecCccEEEEECCCchhhh-------hhhHH
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK------Y--FESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR-------NKFFD 74 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~ 74 (211)
...+++++|.+|+|||||+|+|.+.. . ....|.++.....+.++. .+.++||||..... .+...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34689999999999999999999753 1 122233333333444443 48999999974321 11122
Q ss_pred Hh--hhcCCEEEEEEeCCCc--hhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHHHHHHHH
Q psy4433 75 QY--KSSAKGIVYVLDSSTV--QKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLLQKELNL 147 (211)
Q Consensus 75 ~~--~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l~~~~~~ 147 (211)
.+ ....+.+++++|+... ...+.. .+. +...+.|+++++||+|..+....+...+.+.+.+..
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~-----l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDY-----VSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEE-----EESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----EEE-----ecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 22 2457888999988321 110100 111 222348999999999999887777777777776653
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=7.5e-10 Score=90.34 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--ccccc--ccceeeEEEEecC-----------------ccEEEEECCCc
Q psy4433 7 RKSSQKVVLLSGLSLSGKTLLFARLVYSKY--FESCT--SLKENVGNFTYEK-----------------KNIKIVDLPGE 65 (211)
Q Consensus 7 ~~~~~~ki~i~G~~~~GKSsli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~ 65 (211)
+..+..+++++|++|||||||+|+|++... ...+| |+.++.+.+.+.+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 445678999999999999999999998664 33444 5566777777775 25799999996
Q ss_pred hh-------hhhhhHHHhhhcCCEEEEEEeCCC
Q psy4433 66 DR-------LRNKFFDQYKSSAKGIVYVLDSST 91 (211)
Q Consensus 66 ~~-------~~~~~~~~~~~~~d~ii~v~d~~~ 91 (211)
.. +.. .+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~-~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGN-AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCH-HHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 32 232 23445678999999999864
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=1.5e-08 Score=83.39 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----ccccceeeEEEEecCc----cEEEEECCCchhh--------------
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKK----NIKIVDLPGEDRL-------------- 68 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~----~~~i~D~~G~~~~-------------- 68 (211)
++++++|++|+|||||+|.|++-.+... .+........+.++.. .++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 3599999999999999999998643211 1111111122222322 6899999986321
Q ss_pred hhhhHHHhhh-------------cC--C-EEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCC
Q psy4433 69 RNKFFDQYKS-------------SA--K-GIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAK 132 (211)
Q Consensus 69 ~~~~~~~~~~-------------~~--d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 132 (211)
.. .+..++. ++ | +++++.|+...-. .....+.+.+. .++|+|+|.||+|.....
T Consensus 123 ~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~---~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 123 DA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK---SLDLVTMKKLD------SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C---HHHHHHHHHTC------SCSEEEEEESCGGGSCHH
T ss_pred HH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC---HHHHHHHHHHh------hCCCEEEEEcchhccchH
Confidence 11 1111111 11 2 3556667654222 22223333332 238999999999998655
Q ss_pred CHHHHHHHHHH
Q psy4433 133 SSSVVKTLLQK 143 (211)
Q Consensus 133 ~~~~~~~~l~~ 143 (211)
+.......+.+
T Consensus 193 E~~~l~~~I~~ 203 (427)
T 2qag_B 193 ELTKFKIKITS 203 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=4e-09 Score=85.67 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=65.7
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHH
Q psy4433 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQ 142 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~ 142 (211)
..+.|+. ++..+.+.++++++|+|++++.. .....+.+.+ . ++|+++|+||+||.+... .....+.+.
T Consensus 55 ~~e~f~~-~l~~i~~~~~~il~VvD~~d~~~---~~~~~l~~~~-----~--~~p~ilV~NK~DL~~~~~~~~~~~~~l~ 123 (368)
T 3h2y_A 55 TDDDFLR-ILNGIGKSDALVVKIVDIFDFNG---SWLPGLHRFV-----G--NNKVLLVGNKADLIPKSVKHDKVKHWMR 123 (368)
T ss_dssp -CHHHHH-HHHHHHHSCCEEEEEEETTSHHH---HCCTTHHHHS-----S--SSCEEEEEECGGGSCTTSCHHHHHHHHH
T ss_pred CHHHHHH-HHHHHhccCcEEEEEEECCCCcc---cHHHHHHHHh-----C--CCcEEEEEEChhcCCcccCHHHHHHHHH
Confidence 4578888 78888888999999999988532 1222223332 2 389999999999975443 223333332
Q ss_pred HHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 143 KELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
...... . .....++.+||++|+| +++|+++|.+
T Consensus 124 ~~~~~~------g--------------------------~~~~~v~~iSA~~g~g---i~~L~~~l~~ 156 (368)
T 3h2y_A 124 YSAKQL------G--------------------------LKPEDVFLISAAKGQG---IAELADAIEY 156 (368)
T ss_dssp HHHHHT------T--------------------------CCCSEEEECCTTTCTT---HHHHHHHHHH
T ss_pred HHHHHc------C--------------------------CCcccEEEEeCCCCcC---HHHHHhhhhh
Confidence 222210 0 0113678999999999 9999999854
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.87 E-value=1.8e-08 Score=78.40 Aligned_cols=127 Identities=19% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc---------c-ccceeeEEEEecCc----cEEEEECCCchh---------
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESC---------T-SLKENVGNFTYEKK----NIKIVDLPGEDR--------- 67 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~---------~-t~~~~~~~~~~~~~----~~~i~D~~G~~~--------- 67 (211)
.++++++|++|+|||||+|.|++-..+... + +.......+..+.. .++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 368999999999999999999974322111 1 11111111111211 689999998621
Q ss_pred -hhh---hhHHHh--------------hhcCCEEEEEEeCC-CchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCc
Q psy4433 68 -LRN---KFFDQY--------------KSSAKGIVYVLDSS-TVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128 (211)
Q Consensus 68 -~~~---~~~~~~--------------~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 128 (211)
... .-+..+ ...+.+.++++|.. .+-...+ .+.+..+ .. . +++++|.||+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L-~~-----~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHL-SK-----V-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHH-HT-----T-SEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHH-Hh-----c-CcEEEEEecccc
Confidence 000 000111 11258888889854 2222122 2222332 21 2 799999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy4433 129 TLAKSSSVVKTLLQKELN 146 (211)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~ 146 (211)
....+.......+.+.+.
T Consensus 153 lt~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELE 170 (270)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 876555544444544444
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.82 E-value=2e-07 Score=76.57 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc------cccceeeEEEEecC-ccEEEEECCCchhhhh---hhHHH-hhh
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESC------TSLKENVGNFTYEK-KNIKIVDLPGEDRLRN---KFFDQ-YKS 78 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~------~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~---~~~~~-~~~ 78 (211)
....++++|++|||||||+|.+++-..+... +.+......++... ..+.+||++|...... .+... -+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4458999999999999999999974321111 00100111122221 2789999999642111 01111 123
Q ss_pred cCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 79 SAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 79 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+..++ ++...+.. .+..+...+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~k----qrv~la~aL~~-----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK----NDIDIAKAISM-----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCCH----HHHHHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCccH----HHHHHHHHHHh-----cCCCeEEEEecCccc
Confidence 3455554 77653222 11222222221 228999999999974
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=1.1e-08 Score=83.09 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=65.9
Q ss_pred CchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCC-HHHHHHHHH
Q psy4433 64 GEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKS-SSVVKTLLQ 142 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~l~ 142 (211)
.++.|+. ++..++++++++++|+|++++.... ...+.+.+ . +.|+++|+||+||.+... .....+.+.
T Consensus 57 ~~e~f~~-~L~~~~~~~~lil~VvD~~d~~~s~---~~~l~~~l-----~--~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 57 DDDDFLS-MLHRIGESKALVVNIVDIFDFNGSF---IPGLPRFA-----A--DNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp --CHHHH-HHHHHHHHCCEEEEEEETTCSGGGC---CSSHHHHC-----T--TSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CHHHHHH-HHHHhhccCcEEEEEEECCCCCCch---hhHHHHHh-----C--CCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 4788888 6888888899999999999976422 11222222 2 389999999999976533 233333333
Q ss_pred HHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCC-CcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 143 KELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLY-NQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
..+.. .+ ....++.+||++|.| +++|+++|.+
T Consensus 126 ~~~~~---------------------------------~g~~~~~v~~iSA~~g~g---i~~L~~~I~~ 158 (369)
T 3ec1_A 126 RMAEE---------------------------------LGLCPVDVCLVSAAKGIG---MAKVMEAINR 158 (369)
T ss_dssp HHHHT---------------------------------TTCCCSEEEECBTTTTBT---HHHHHHHHHH
T ss_pred HHHHH---------------------------------cCCCcccEEEEECCCCCC---HHHHHHHHHh
Confidence 22220 01 113678899999999 9999998854
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=1.2e-08 Score=79.97 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=59.6
Q ss_pred EEECCCch-hhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHH
Q psy4433 59 IVDLPGED-RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVV 137 (211)
Q Consensus 59 i~D~~G~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 137 (211)
+-..|||. ....+ ....+..+|+++.|+|+.+|...... .+..++ .. +|.++|+||+||.+.. ..
T Consensus 3 i~w~PGhm~ka~~~-~~~~l~~aDvVl~VvDAr~p~~~~~~---~l~~~l-----~~--kp~ilVlNK~DL~~~~---~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARRE-VTEKLKLIDIVYELVDARIPMSSRNP---MIEDIL-----KN--KPRIMLLNKADKADAA---VT 68 (282)
T ss_dssp ------CTTHHHHH-HHHHGGGCSEEEEEEETTSTTTTSCH---HHHHHC-----SS--SCEEEEEECGGGSCHH---HH
T ss_pred CcCCchHHHHHHHH-HHHHHhhCCEEEEEEeCCCCCccCCH---HHHHHH-----CC--CCEEEEEECcccCCHH---HH
Confidence 44579986 34443 45567789999999999987653321 122332 22 8999999999997521 11
Q ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 138 KTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
+...+.+. ....+++.+||++|.| +++|+++|.+
T Consensus 69 -~~~~~~~~-----------------------------------~~g~~~i~iSA~~~~g---i~~L~~~i~~ 102 (282)
T 1puj_A 69 -QQWKEHFE-----------------------------------NQGIRSLSINSVNGQG---LNQIVPASKE 102 (282)
T ss_dssp -HHHHHHHH-----------------------------------TTTCCEEECCTTTCTT---GGGHHHHHHH
T ss_pred -HHHHHHHH-----------------------------------hcCCcEEEEECCCccc---HHHHHHHHHH
Confidence 11111111 0014668899999999 9999887754
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3.2e-08 Score=77.50 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--cccceeeEEEEecCccEEEEECCCch
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGED 66 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~ 66 (211)
...++++++|.+|||||||+|+|.+....... |.++.....+.. +..+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 45689999999999999999999987643222 322222222333 4489999999974
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=1.3e-08 Score=78.81 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccccce--eeEEEEecCccEEEEECCCchh
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE--NVGNFTYEKKNIKIVDLPGEDR 67 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~ 67 (211)
++++++|.+|+|||||+|+|.+.......++.+. ....+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998765433332222 2222332 34789999999754
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.47 E-value=3.2e-08 Score=76.66 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=55.1
Q ss_pred CCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCCCCHHHHHHHH
Q psy4433 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLAKSSSVVKTLL 141 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~l 141 (211)
.|||...........+.++|+++.|+|+.+|....... +. + . ++|.++|+||+||.+... . +..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~---l~-l-----l---~k~~iivlNK~DL~~~~~---~-~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG---VD-F-----S---RKETIILLNKVDIADEKT---T-KKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT---SC-C-----T---TSEEEEEEECGGGSCHHH---H-HHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH---HH-h-----c---CCCcEEEEECccCCCHHH---H-HHH
Confidence 58875322112455677899999999999876522110 01 1 1 389999999999975321 1 111
Q ss_pred HHHHHHHhhhcccccccchhhcccccccCCCCCCeeecCCCCcEEEEEEeeecCCCccchHHHHHHHhh
Q psy4433 142 QKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFCDTTGLDSASEYDVEQLQDWMVT 210 (211)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~tg~g~~~i~~l~~~i~~ 210 (211)
.+.+.. .+ .++ .+||++|.| +++|+++|.+
T Consensus 68 ~~~~~~---------------------------------~g--~~v-~iSa~~~~g---i~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKK---------------------------------QG--KRV-ITTHKGEPR---KVLLKKLSFD 97 (262)
T ss_dssp HHHHHH---------------------------------TT--CCE-EECCTTSCH---HHHHHHHCCC
T ss_pred HHHHHH---------------------------------cC--CeE-EEECCCCcC---HHHHHHHHHH
Confidence 111210 00 344 789999999 9999998764
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=2.5e-07 Score=79.12 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=41.5
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-ccc-ceeeEEEEe-------cCccEEEEECCCchh
Q psy4433 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESC-TSL-KENVGNFTY-------EKKNIKIVDLPGEDR 67 (211)
Q Consensus 5 ~~~~~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~t~-~~~~~~~~~-------~~~~~~i~D~~G~~~ 67 (211)
.....+..+|+++|.+|+|||||+|+|.+....-.. .|+ +...+.+.+ .+..+.++||||...
T Consensus 32 ~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 32 SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp HTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 334456688999999999999999999987632122 111 112222222 345899999999753
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.35 E-value=5.5e-07 Score=74.50 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc------c--cc-c---------------------ccc--ccee---e--EEE-Ee
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK------Y--FE-S---------------------CTS--LKEN---V--GNF-TY 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~------~--~~-~---------------------~~t--~~~~---~--~~~-~~ 52 (211)
...|+++|++||||||+++.|...- . .. + ++. .+.+ . ..+ .+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998521 1 00 0 000 0000 0 000 12
Q ss_pred cCccEEEEECCCchhhhhhhHHH---h--hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCC-c-EEEEEeC
Q psy4433 53 EKKNIKIVDLPGEDRLRNKFFDQ---Y--KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRV-N-ILVCCNK 125 (211)
Q Consensus 53 ~~~~~~i~D~~G~~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK 125 (211)
++..+.++||||.......+... . ...+|.+++|+|+..... .......+.. .+ | ..+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~----~~~~~~~~~~-------~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ----AGIQAKAFKE-------AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG----HHHHHHHHHT-------TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH----HHHHHHHHhh-------cccCCeEEEEeC
Confidence 44589999999975432211111 1 125899999999976433 1122222211 14 5 7899999
Q ss_pred CCccC
Q psy4433 126 QDQTL 130 (211)
Q Consensus 126 ~Dl~~ 130 (211)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99853
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.33 E-value=1.9e-06 Score=74.33 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
..++++|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999854
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.27 E-value=2.6e-06 Score=70.43 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------Ccc---c-ccc-c-----------ccceeeEEE-----------------
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY------SKY---F-ESC-T-----------SLKENVGNF----------------- 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~------~~~---~-~~~-~-----------t~~~~~~~~----------------- 50 (211)
+...|+++|++||||||++..|.. .+. . ..+ + ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999873 111 0 000 0 001000000
Q ss_pred EecCccEEEEECCCchhhhhh----hHH-HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeC
Q psy4433 51 TYEKKNIKIVDLPGEDRLRNK----FFD-QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~~~~~----~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 125 (211)
..++..+.++||||....... +.. .....+|.+++|+|++........+ ..+.. . -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a-~~f~~---~------~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA-LAFKE---A------TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHH---S------CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH-HHHHh---h------CCCeEEEEEC
Confidence 012347999999995321110 111 1123589999999998754422222 22222 1 0356789999
Q ss_pred CCccC
Q psy4433 126 QDQTL 130 (211)
Q Consensus 126 ~Dl~~ 130 (211)
.|...
T Consensus 249 lD~~~ 253 (443)
T 3dm5_A 249 LDGSA 253 (443)
T ss_dssp CSSCS
T ss_pred CCCcc
Confidence 99864
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.17 E-value=3e-05 Score=64.02 Aligned_cols=110 Identities=25% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------Ccc--cc--cc------------cccceeeEE-----------------E
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY------SKY--FE--SC------------TSLKENVGN-----------------F 50 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~------~~~--~~--~~------------~t~~~~~~~-----------------~ 50 (211)
+...|+++|++||||||++..|.. .+. .. .+ ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356789999999999999999873 111 00 00 000110000 0
Q ss_pred EecCccEEEEECCCchh------hhhhhHHH-hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEE
Q psy4433 51 TYEKKNIKIVDLPGEDR------LRNKFFDQ-YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCC 123 (211)
Q Consensus 51 ~~~~~~~~i~D~~G~~~------~~~~~~~~-~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 123 (211)
..++..+.++||||... +..++... -.-.++.+++|+|+...+.... ....+...+ .+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~-~a~~f~~~~---------~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD-LASRFHQAS---------PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH-HHHHHHHHC---------SSEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH-HHHHHhccc---------CCcEEEE
Confidence 01234788999999533 11111110 0124699999999987544232 223333321 4578899
Q ss_pred eCCCcc
Q psy4433 124 NKQDQT 129 (211)
Q Consensus 124 nK~Dl~ 129 (211)
||.|..
T Consensus 246 TKlD~~ 251 (433)
T 3kl4_A 246 TKMDGT 251 (433)
T ss_dssp ECGGGC
T ss_pred eccccc
Confidence 999986
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.07 E-value=3.3e-06 Score=66.67 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=36.6
Q ss_pred HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 75 QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
....++|.+++|+|+.+|..+...+.+++..... .++|.++|+||+||.+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------NDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------TTCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECCccCch
Confidence 3467899999999998776655544444433321 23899999999999765
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.01 E-value=1.3e-05 Score=63.05 Aligned_cols=108 Identities=23% Similarity=0.230 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc------Cccc---cc-c-cc-----------cceeeE--------------EE-Ee-
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY------SKYF---ES-C-TS-----------LKENVG--------------NF-TY- 52 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~------~~~~---~~-~-~t-----------~~~~~~--------------~~-~~- 52 (211)
...++++|++|+||||++..|.. ++.. .. + +. .+.... .+ ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999873 1210 00 0 00 000000 00 01
Q ss_pred -cCccEEEEECCCchh--hhhhhHH-----HhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEE
Q psy4433 53 -EKKNIKIVDLPGEDR--LRNKFFD-----QYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCC 123 (211)
Q Consensus 53 -~~~~~~i~D~~G~~~--~~~~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~ 123 (211)
++..+.++||||... ....+.. .....+|.+++|+|+......+.. ...+.. . .| ..+|+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----~~~~~~-----~--~~i~gvVl 246 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL----ASKFNQ-----A--SKIGTIII 246 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHH-----T--CTTEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHH----HHHHHh-----h--CCCCEEEE
Confidence 334799999999765 3221221 123458999999999754332222 222221 1 45 77899
Q ss_pred eCCCcc
Q psy4433 124 NKQDQT 129 (211)
Q Consensus 124 nK~Dl~ 129 (211)
||.|..
T Consensus 247 nk~D~~ 252 (297)
T 1j8m_F 247 TKMDGT 252 (297)
T ss_dssp ECGGGC
T ss_pred eCCCCC
Confidence 999975
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.81 E-value=5.6e-06 Score=69.26 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEE--EecC--ccEEEEECCCchh--hhhhhH--------H
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNF--TYEK--KNIKIVDLPGEDR--LRNKFF--------D 74 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~--~~~~~~--------~ 74 (211)
.....|+++|.+||||||+.++|.........++..++...+ ...+ ....+||..|... .+. .+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re-~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRK-QCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHH-HHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 446789999999999999999998643222222222221111 0011 2345789999732 333 22 4
Q ss_pred HhhhcCCEEEEEEeCCCch
Q psy4433 75 QYKSSAKGIVYVLDSSTVQ 93 (211)
Q Consensus 75 ~~~~~~d~ii~v~d~~~~~ 93 (211)
.++..+.+.++|+|+++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4566678889999998853
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.75 E-value=7.6e-05 Score=58.86 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 455899999999999999999984
No 234
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.67 E-value=0.00011 Score=60.69 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred CccEEEEECCCchhhhhhhHHH-----hhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCc-EEEEEeCCC
Q psy4433 54 KKNIKIVDLPGEDRLRNKFFDQ-----YKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN-ILVCCNKQD 127 (211)
Q Consensus 54 ~~~~~i~D~~G~~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D 127 (211)
+..+.++||||........... ....++.+++|+|+.........+ ..+..- ++ .-+|+||.|
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~-~~f~~~----------l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA-KAFNEA----------LPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH-HHHHHH----------SCCCCEEEECTT
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH-HHHhcc----------CCCeEEEEecCC
Confidence 4489999999974332111111 133589999999997654322222 111111 33 346899999
Q ss_pred ccCC
Q psy4433 128 QTLA 131 (211)
Q Consensus 128 l~~~ 131 (211)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8543
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.67 E-value=4.3e-05 Score=60.91 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.67 E-value=6.9e-05 Score=60.32 Aligned_cols=48 Identities=21% Similarity=0.114 Sum_probs=31.1
Q ss_pred hhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccCC
Q psy4433 77 KSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131 (211)
Q Consensus 77 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (211)
..++|.+++| |+.+|..+...+.+++..... . ++|.++|+||+||.+.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~----~--~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCET----L--QVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHH----H--TCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHh----c--CCCEEEEEECccCCCc
Confidence 4678988876 555666545444444433221 1 2788999999999754
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.66 E-value=3.9e-05 Score=64.14 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999875
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.52 E-value=0.00011 Score=60.90 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-.-|+|+|++++|||+|+|+|.+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 445689999999999999999986
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.49 E-value=0.00011 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999873
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.47 E-value=0.00021 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999999874
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.44 E-value=8.3e-05 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++++|++|||||||++.+++-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999863
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.35 E-value=9.9e-05 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999986
No 243
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.35 E-value=0.00013 Score=55.47 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=21.4
Q ss_pred eccccCCCCEEEEEcCCCCCHHHHHHHHH
Q psy4433 4 FKFRKSSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 4 ~~~~~~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
|..+..+...|+++|++||||||+++.|.
T Consensus 20 ~~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 20 FQSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ------CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33444455789999999999999999998
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++++|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.28 E-value=0.00034 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|+||||++..|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999874
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.23 E-value=0.001 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++|+||||++..|..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998874
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.19 E-value=0.00019 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++++|++|||||||++.|.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999985
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.19 E-value=0.00021 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+|+|++|||||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.17 E-value=0.00028 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.15 E-value=0.00022 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999863
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.14 E-value=0.00029 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.-.++++|++||||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999874
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.13 E-value=0.00024 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999873
No 253
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00034 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--|+++|++|||||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999863
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.10 E-value=0.00038 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.+..-|+++|++|||||||++.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345568999999999999999998643
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.08 E-value=0.00037 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.--++++|++|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 446899999999999999999864
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.05 E-value=0.00035 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999986
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.04 E-value=0.00027 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|||||||++.+..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 34589999999999999997553
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.03 E-value=0.00037 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy4433 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
|+++||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.02 E-value=0.00047 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+...++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999998643
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.01 E-value=0.00033 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 446899999999999999999863
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00046 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.94 E-value=0.00041 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.94 E-value=0.00049 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.-.++++|+.|||||||++.+.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998744
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.92 E-value=0.00052 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
.-.++++|++|||||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999997543
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.00055 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..-|+++|++||||||++++|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.92 E-value=0.00051 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.90 E-value=0.00067 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 268
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.87 E-value=0.00076 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.87 E-value=0.00074 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.00054 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999863
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.87 E-value=0.00058 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.86 E-value=0.00054 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.86 E-value=0.00052 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.85 E-value=0.00054 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999864
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.0007 Score=48.04 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q psy4433 12 KVVLLSGLSLSGKTLLFARL 31 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l 31 (211)
+-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.85 E-value=0.00061 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 277
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.84 E-value=0.00079 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999875
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.84 E-value=0.00073 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 279
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.84 E-value=0.00061 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00075 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.82 E-value=0.00081 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++-.++|+|++|||||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456799999999999999999885
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.82 E-value=0.00058 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.82 E-value=0.00066 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|+.|||||||++.+.+-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.81 E-value=0.00058 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.81 E-value=0.00066 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 446899999999999999999863
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.81 E-value=0.00082 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.80 E-value=0.00083 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.++++|++|||||||++.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 445789999999999999999986
No 288
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.79 E-value=0.00082 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.78 E-value=0.00066 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.78 E-value=0.00083 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999974
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00078 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 292
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.77 E-value=0.00085 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+++-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999974
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00069 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999999874
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00089 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.00092 Score=49.06 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.001 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
No 297
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.76 E-value=0.0011 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
.+...|+++|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999998
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.76 E-value=0.00078 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.76 E-value=0.0012 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......|+++|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999875
No 300
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.75 E-value=0.024 Score=41.20 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred ccEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCcc
Q psy4433 55 KNIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129 (211)
Q Consensus 55 ~~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 129 (211)
..+.++|+|+.... .....+..+|.+++++..+... ..+...+..+..... ..++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~~~---~~~~~l~~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV---ITSAAVMVSDLVIIPVTPSPLD---FSAAGSVVTVLEAQA-YSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSSH---HHHHHHHHCSEEEEEECSCTTT---HHHHHHHHHHHTTSC-GGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCCH---HHHHHHHHCCEEEEEecCCHHH---HHHHHHHHHHHHHHH-hCCCCcEEEEEeccCCC
Confidence 37999999987632 2344556699999999875422 333333333322111 12347889999999854
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.75 E-value=0.00089 Score=52.91 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+...|+|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999999876
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00099 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 303
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.75 E-value=0.00092 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 304
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.74 E-value=0.0008 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 446899999999999999999864
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.74 E-value=0.00095 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.00087 Score=48.33 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhh
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
-..++++|++|||||||++++...- +..+.....+......+ -+|.+|...++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l-----~~~g~~v~~i~~~~~~~-~id~~g~Ds~~ 58 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDM-DVDKPGKDSYE 58 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-----HHTTCCEEEEEECCC-------------C
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc-----cccCCceeEEeeCCCcc-ccCCCCCceEE
Confidence 3568999999999999999998631 11233345555544433 24666665444
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.73 E-value=0.001 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 308
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.71 E-value=0.001 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 447899999999999999999863
No 309
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.70 E-value=0.0011 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.-.++++|+.|||||||++.+.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3446899999999999999999864
No 310
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.69 E-value=0.0009 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.69 E-value=0.0011 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.68 E-value=0.0013 Score=47.58 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.68 E-value=0.00076 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-.++++|++|+|||+|++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998863
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.00047 Score=49.61 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccccceeeEEEEecCccEEEEECCCchhhh
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLR 69 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 69 (211)
.++++|++|||||||++.+.+-. +..+...+.+.+++..+.-+|.++...++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~-----~~~g~~~G~I~~dg~~i~~~~~~~~d~~r 55 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL-----RERGLRVAVVKRHAHGDFEIDKEGKDSWK 55 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH-----HHTTCCEEEEEC------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----hhcCCceEEEEEcCcccccCCccchhHHH
Confidence 68999999999999999998622 12233456677776654445555555554
No 315
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.68 E-value=0.00094 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 446899999999999999999864
No 316
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.67 E-value=0.0011 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.001 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3468999999999999999998744
No 318
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.00033 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4589999999999999999998643
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.67 E-value=0.00068 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH-cC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLV-YS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~-~~ 34 (211)
.--++++|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 53
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.66 E-value=0.0014 Score=48.33 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+...|+++|++||||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.66 E-value=0.0013 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.0011 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.65 E-value=0.0014 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 324
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.65 E-value=0.0013 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.-.++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999998 44
No 325
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.65 E-value=0.001 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999998754
No 326
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.001 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+..+|+++|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.64 E-value=0.0016 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999864
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.64 E-value=0.0011 Score=50.08 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
+.--++++|++|||||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34468999999999999999887
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.63 E-value=0.0011 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|||||||++.+++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999986
No 330
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.0012 Score=47.64 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0016 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.59 E-value=0.0014 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.59 E-value=0.0012 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=-++++|++|||||||++.+.+-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 345799999999999999999873
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.58 E-value=0.0014 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 335
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.58 E-value=0.00099 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-+++++|++|||||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.0018 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0013 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.57 E-value=0.0016 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+...|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 339
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.56 E-value=0.0014 Score=48.09 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999875
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.55 E-value=0.0015 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.54 E-value=0.0017 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.0013 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-.++++|++|||||||++.+++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 33799999999999999999976
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0017 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0017 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.52 E-value=0.001 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999863
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.52 E-value=0.0019 Score=47.57 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 347
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.52 E-value=0.0014 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 346899999999999999999863
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.51 E-value=0.00099 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.=.++++|++|||||||++.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 445799999999999999999886
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.50 E-value=0.0017 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+-|+++|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998864
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.50 E-value=0.0014 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.260 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|++|||||||++.+.+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46799999999999999999864
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.49 E-value=0.0018 Score=51.06 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0021 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..++++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 353
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0017 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.47 E-value=0.0017 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 355
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.47 E-value=0.0018 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3447899999999999999999864
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.47 E-value=0.0019 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0019 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999974
No 358
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0016 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 346899999999999999999874
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.46 E-value=0.0016 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=-++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 346899999999999999999873
No 360
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.46 E-value=0.0016 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.192 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 346899999999999999999873
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.43 E-value=0.0017 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+-.++++|++|||||||++.+.+-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4557999999999999999999874
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.42 E-value=0.0017 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 35799999999999999999864
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.42 E-value=0.0018 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 346799999999999999999863
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.40 E-value=0.0018 Score=46.32 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0022 Score=46.73 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999864
No 366
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0026 Score=47.86 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999874
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.38 E-value=0.0022 Score=50.05 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...-|++.|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.37 E-value=0.0026 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|++.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.37 E-value=0.0019 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-++++|++|+|||+|++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999986
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0024 Score=45.80 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999976
No 371
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.35 E-value=0.031 Score=43.58 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=40.3
Q ss_pred cEEEEECCCchhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEE-EEEeCCCc
Q psy4433 56 NIKIVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNIL-VCCNKQDQ 128 (211)
Q Consensus 56 ~~~i~D~~G~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl 128 (211)
.+.++|+|+...... ....+..+|.+++++.... . .+..+...+..+.... ...+.+++ +|+|+.+-
T Consensus 158 D~ViiD~p~~~~~~~--~~~~l~~aD~viiv~~~~~-~-s~~~~~~~~~~l~~~~--~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 158 DVVIFDVLGDVVCGG--FAAPLQHADQAVVVTANDF-D-SIYAMNRIIAAVQAKS--KNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECCSSCCGG--GGGGGGTCSEEEEEECSSH-H-HHHHHHHHHHHHHTTT--TTCCCEEEEEEEESCSC
T ss_pred CEEEEeCCCccchHH--HHHHHHHCCEEEEEecCcH-H-HHHHHHHHHHHHHHhh--hcCCCceEEEEEecCCc
Confidence 789999987643221 1234567999999997743 2 2455544444443221 12336655 89999983
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.35 E-value=0.0022 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++-.++++|++||||||+++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999986
No 373
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.35 E-value=0.0021 Score=48.94 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++|+|||+|++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999986
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.35 E-value=0.0016 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+-.++++|++|||||||++.+.+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999863
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.34 E-value=0.0027 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.31 E-value=0.0026 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.30 E-value=0.0026 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.30 E-value=0.0023 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999974
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.30 E-value=0.0027 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.28 E-value=0.0022 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.=.++++|++|||||||++.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34689999999999999999986
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.28 E-value=0.0021 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++--++++|++||||||+++.+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999986
No 382
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.28 E-value=0.15 Score=37.34 Aligned_cols=65 Identities=5% Similarity=-0.010 Sum_probs=42.1
Q ss_pred cEEEEECCCc-hhhhhhhHHHhhhcCCEEEEEEeCCCchhhHHHHHHHHHHHHcCcCcCCCCCcEEEEEeCCCccC
Q psy4433 56 NIKIVDLPGE-DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTL 130 (211)
Q Consensus 56 ~~~i~D~~G~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 130 (211)
.+.++|+|+. .... ....+..+|.+|+++..+. . .+..+...+..+... .+ .++.+|+|+.|-..
T Consensus 69 D~viiD~p~~~~~~~---~~~~l~~aD~viiv~~~~~-~-~~~~~~~~~~~l~~~---~~--~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDED---LEALADGCDLLVIPSTPDA-L-ALDALMLTIETLQKL---GN--NRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSSH---HHHHHHTSSEEEEEECSSH-H-HHHHHHHHHHHHHHT---CS--SSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcHH---HHHHHHHCCEEEEEecCCc-h-hHHHHHHHHHHHHhc---cC--CCEEEEEEecCCcc
Confidence 7899999987 4322 3345567999999998754 2 244454444443321 12 67889999998653
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0027 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44789999999999999999985
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.27 E-value=0.0015 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 346899999999999999999864
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0035 Score=44.79 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998763
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0029 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 387
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.25 E-value=0.00095 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.24 E-value=0.002 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..-|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998864
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.24 E-value=0.0033 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 390
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.22 E-value=0.0034 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+.|++.|++||||||+.+.|..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.21 E-value=0.0029 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 392
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.21 E-value=0.0026 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..++++|++||||||+++.+++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999986
No 393
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0028 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-+++++|+.|||||||++.|++-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999863
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0028 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999875
No 395
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.19 E-value=0.0022 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.17 E-value=0.0025 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=16.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.16 E-value=0.0038 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+..-|++.|++||||||++++|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.13 E-value=0.0031 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 399999999999999999986
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.13 E-value=0.0031 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||||+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999984
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.11 E-value=0.0037 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.11 E-value=0.0015 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|++|||||||++.+.+-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999864
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.10 E-value=0.0035 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.10 E-value=0.0031 Score=50.19 Aligned_cols=23 Identities=35% Similarity=0.290 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999863
No 404
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.08 E-value=0.0046 Score=48.04 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||++++.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.07 E-value=0.0036 Score=50.17 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=+++++|++|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.0039 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.03 E-value=0.0043 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.-.++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 344789999999999999999985
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.01 E-value=0.004 Score=43.58 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy4433 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999986
No 409
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.98 E-value=0.0051 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.5
Q ss_pred CCCE-EEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKV-VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~k-i~i~G~~~~GKSsli~~l~~ 33 (211)
++.| |+++|+|||||+|...+|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 56789999999999999985
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0042 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-.|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.98 E-value=0.0049 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...|+++|++||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999875
No 412
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.0042 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
....+++.|++|+|||+++..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999998753
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.94 E-value=0.0032 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999964
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.92 E-value=0.0042 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||||+..+.+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.91 E-value=0.0055 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|+++|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.91 E-value=0.0058 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 417
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.91 E-value=0.0059 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...++++|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999986
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.91 E-value=0.0054 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+++++++|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.89 E-value=0.003 Score=49.35 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+.+.|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.89 E-value=0.0058 Score=46.21 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 3 ~~~~~~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++.....+..-|++.|++||||||+++.|..
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455667899999999999999999874
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.86 E-value=0.0058 Score=43.23 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.85 E-value=0.0051 Score=44.93 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999885
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.84 E-value=0.0051 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=+++++|++|||||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999874
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0052 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 425
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.84 E-value=0.0051 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999986
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.83 E-value=0.0052 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 445689999999999999999987
No 427
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.81 E-value=0.0049 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999985
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.80 E-value=0.0057 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++-.++++|++|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457999999999999999999863
No 429
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.79 E-value=0.0072 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......+++.|++|+|||+|+.++..
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999999975
No 430
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0053 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+..|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.77 E-value=0.0069 Score=49.08 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999985
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.72 E-value=0.0067 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=.++++|++|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999864
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.70 E-value=0.0081 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 434
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.70 E-value=0.0061 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy4433 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|||||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999987
No 435
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.68 E-value=0.0059 Score=45.12 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+-.+++.||+|+|||+++.++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999988875
No 436
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.67 E-value=0.0083 Score=46.80 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...-+++.|++|+|||+|..++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999985
No 437
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.64 E-value=0.012 Score=40.63 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.....|++.|++|+|||++...+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 445679999999999999999997643
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.0057 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|||||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3446899999999999999999874
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.63 E-value=0.0069 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 440
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.63 E-value=0.0093 Score=46.47 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999987764
No 441
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.0091 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+...+++.|++|+|||+|++++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3446799999999999999999986
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.60 E-value=0.0089 Score=46.06 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999975
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.0068 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457899999999999999999873
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.56 E-value=0.006 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++-.++++|++|||||||++.+.+-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999863
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.54 E-value=0.01 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+++..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999976
No 446
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.0078 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.54 E-value=0.0093 Score=43.84 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
...|+|+|++|+|||+|...|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998643
No 448
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.53 E-value=0.0077 Score=44.60 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 449
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.50 E-value=0.0069 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=.++++|++|||||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3458999999999999999998863
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.50 E-value=0.0084 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
+.=.++++|+.|||||||++.+.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999743
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.46 E-value=0.0078 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|+.|+|||||++.+.+-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4457899999999999999999864
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.42 E-value=0.0053 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
++...|++.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.0083 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.=.++++|+.|||||||++.+.+-
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
No 454
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.41 E-value=0.011 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
...++++|++|+|||+++..+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999998863
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.40 E-value=0.011 Score=46.10 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455799999999999999999986
No 456
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.39 E-value=0.01 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~ 33 (211)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 457
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.39 E-value=0.0089 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+.--++++|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999999885
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.38 E-value=0.011 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|+++|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 459
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.37 E-value=0.012 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.36 E-value=0.0098 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.=.++++|+.|+|||||++.+.+-.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999743
No 461
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.36 E-value=0.013 Score=47.05 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 8 KSSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 8 ~~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
......+++.|++|+|||+|+..+..
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999999975
No 462
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.36 E-value=0.0057 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
++=.++++|++|||||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3457899999999999999988763
No 463
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.33 E-value=0.0092 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999986
No 464
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.30 E-value=0.01 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
++.+|++++|...|||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 567899999999999999999875
No 465
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.27 E-value=0.012 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....|++.|++|+|||+|+..+..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Confidence 3445699999999999999999986
No 466
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.23 E-value=0.0079 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.=.++++|++|||||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988763
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.21 E-value=0.013 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999853
No 468
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.011 Score=46.95 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy4433 14 VLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~ 33 (211)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999886
No 469
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.18 E-value=0.035 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~ 32 (211)
+-.-|+|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34566799999999999999664
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.18 E-value=0.011 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999886
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.17 E-value=0.012 Score=43.36 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy4433 13 VVLLSGLSLSGKTLLFARLV 32 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~ 32 (211)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999985
No 472
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.012 Score=44.01 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.--++++|++|+|||+|+.+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999887764
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.16 E-value=0.014 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.013 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYSK 35 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~~ 35 (211)
.++++|+.|||||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999998743
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.012 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999875
No 476
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.11 E-value=0.014 Score=44.81 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.....+++.|++|+|||+++..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999863
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.09 E-value=0.016 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999975
No 478
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.017 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+....|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 3456799999999999999999986
No 479
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.05 E-value=0.016 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.++--|++.||+|+|||.|..++..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3445699999999999999999986
No 480
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.04 E-value=0.015 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....+++.|++|+|||+++..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999999875
No 481
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.01 E-value=0.013 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998853
No 482
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.013 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.97 E-value=0.014 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.201 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
+.--+.++|++|+|||||+..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999863
No 484
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.018 Score=47.34 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....-|++.||||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999986
No 485
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.95 E-value=0.009 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+...++++|++|||||||++.|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 456799999999999999999986
No 486
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.94 E-value=0.019 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.....+++.|++|+|||+|+..+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999975
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.92 E-value=0.019 Score=45.16 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q psy4433 12 KVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 12 ~ki~i~G~~~~GKSsli~~l~~ 33 (211)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999999985
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.92 E-value=0.016 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.91 E-value=0.016 Score=52.51 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVYSKY 36 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~~~~ 36 (211)
++=.++++|+.|||||||++.+.++..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344789999999999999999996543
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.88 E-value=0.016 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 491
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.88 E-value=0.02 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 492
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.02 Score=47.25 Aligned_cols=25 Identities=40% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....-|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4456899999999999999999986
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.83 E-value=0.018 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
...+++.|++|+|||+++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 494
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.82 E-value=0.0097 Score=41.08 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 10 SQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 10 ~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
....|++.|++|+|||++...+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 455799999999999999998865
No 495
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.80 E-value=0.02 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.....++++|++|+|||+++..+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998764
No 496
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.79 E-value=0.021 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.....+++.|++|+|||+|+..+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999863
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.79 E-value=0.02 Score=41.12 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q psy4433 11 QKVVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 11 ~~ki~i~G~~~~GKSsli~~l~~~ 34 (211)
..-|++.|++|+||||+.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999999864
No 498
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.77 E-value=0.0029 Score=47.60 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy4433 14 VLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 14 i~i~G~~~~GKSsli~~l~~~ 34 (211)
++++|++|||||||++.+++-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999863
No 499
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.76 E-value=0.011 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q psy4433 9 SSQKVVLLSGLSLSGKTLLFARLVY 33 (211)
Q Consensus 9 ~~~~ki~i~G~~~~GKSsli~~l~~ 33 (211)
+++=+|+++|++|||||||++.|.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
No 500
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.018 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy4433 13 VVLLSGLSLSGKTLLFARLVYS 34 (211)
Q Consensus 13 ki~i~G~~~~GKSsli~~l~~~ 34 (211)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
Done!