RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4433
(211 letters)
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 107 bits (266), Expect = 1e-29
Identities = 70/203 (34%), Positives = 119/203 (58%), Gaps = 6/203 (2%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEK---KNIKIVDLPGEDRL 68
+ VL GL SGKTLLF RL+ +Y ++ TS+ ++ + ++ ++DLPG + L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 69 RNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQ 128
R + D++KSSA+ +V+V+DS+ Q+ ++DVAE LY +L D + ++L+ CNKQD
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 129 TLAKSSSVVKTLLQKELNLVRRTKSNQLEDTNDVAANQTFLGNPDKDFEFSDLYNQVSFC 188
+AKS+ +++ L+KELN +R T+S + + LG K+FEFS L +V F
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180
Query: 189 DTTGLDSASE---YDVEQLQDWM 208
+ + + D++ L+ W+
Sbjct: 181 ECSAKGGRGDTGSADIQDLEKWL 203
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 90.5 bits (223), Expect = 3e-23
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 15/210 (7%)
Query: 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRL 68
S Q ++++G SGKT L L + S + + Y+ + +VD PG +L
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 59
Query: 69 RNKFFDQYKSSA---KGIVYVLDSSTVQKTLRDVAESLY-VILADPQVQSSRVNILVCCN 124
R K D K+ A KG+++++DS+ K L AE L ++ + ++IL+ CN
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 125 KQDQTLAKSSSVVKTLLQKELNLVRRTKSNQLED------TNDVAANQTFLGNPDKDFEF 178
K + A+ S +K L+ E+ V + L + D A N + F+F
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKF 179
Query: 179 SDLYNQVSFCDTTGLDSASEYDVEQLQDWM 208
++L V + S ++ + Q ++W+
Sbjct: 180 ANLEASVVAFE----GSINKRKISQWREWI 205
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 43.4 bits (101), Expect = 4e-06
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGE 65
F ++++L GL +GKT + +L + + ++ NV TY+ + D+ G+
Sbjct: 8 FGNKEMRILML-GLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 66
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
D++R + Y + +G+++V+D + + + + L+ I+ D +++ IL+ NK
Sbjct: 67 DKIRP-LWRHYYTGTQGLIFVVD-CADRDRIDEARQELHRIINDREMRD--AIILIFANK 122
Query: 126 QDQTLAKSSSVVKTLLQKEL 145
QD A ++ L
Sbjct: 123 QDLPDAMKPHEIQEKLGLTR 142
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 40.9 bits (95), Expect = 3e-05
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE---NVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GKT + R + + S + + K IK I D G++
Sbjct: 8 KLLLI-GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R R Y A GI+ V D T +K+ ++ + I ++ + C+
Sbjct: 67 RFRT-ITTAYYRGAMGIMLVYD-ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 127 DQ 128
D+
Sbjct: 125 DK 126
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 39.0 bits (90), Expect = 1e-04
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS---LKENVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GK+ L R V K+ S + + + K +K I D G++
Sbjct: 4 KILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y A GI+ V D +
Sbjct: 63 RFRT-ITTAYYRGAMGIILVYDIT 85
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 38.1 bits (87), Expect = 2e-04
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 3 FFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDL 62
F K + K+V L GL +GKT L L + + +L T DL
Sbjct: 6 FLGLYKKTGKLVFL-GLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 64
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVC 122
G + + + Y + GIV+++D + ++ L E + + V IL+
Sbjct: 65 GGHIQ-ARRVWKNYLPAINGIVFLVDCADHERLLESKEE---LDSLMTDETIANVPILIL 120
Query: 123 CNKQDQTLAKSSSVVKTLLQKE 144
NK D+ A S ++ +
Sbjct: 121 GNKIDRPEAISEERLREMFGLY 142
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 37.2 bits (85), Expect = 4e-04
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-----NFTYEKKNIKIVDLPGED 66
K++++ G S GKT R + + S ++ ++I D G++
Sbjct: 7 KILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVYVLD 88
R R Y A G + + D
Sbjct: 66 RYR-TITTAYYRGAMGFILMYD 86
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.6 bits (83), Expect = 7e-04
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
+++++ GL +GKT + +L + + ++ NV Y+ + + D+ G+D++R
Sbjct: 2 RILMV-GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 72 FFDQYKSSAKGIVYV 86
+ ++++ I V
Sbjct: 61 WRHYFQNTQGLIFVV 75
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 36.5 bits (83), Expect = 8e-04
Identities = 25/144 (17%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 2 LFFKFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
++ F KV+++ GL +GKT + + ++ + ++ NV + D
Sbjct: 7 IWRLFNHQEHKVIIV-GLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWD 65
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILV 121
+ G++ LR+ ++ Y ++ + ++ V+DS+ + R + + +L+
Sbjct: 66 IGGQESLRS-SWNTYYTNTEFVIVVVDSTDRE---RISVTREELYKMLAHEDLRKAGLLI 121
Query: 122 CCNKQDQTLAKSSSVVKTLLQKEL 145
NKQD + + + L+
Sbjct: 122 FANKQDVKECMTVAEISQFLKLTS 145
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.4 bits (83), Expect = 8e-04
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVG-----NFTYEKKNIKIVDLPGED 66
K++++ G S GK+ L R + + + K + I D G++
Sbjct: 9 KILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y A+G++ V D +
Sbjct: 68 RFRT-LTPSYYRGAQGVILVYDVT 90
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 36.5 bits (83), Expect = 0.001
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 2 LFFKFRKSSQ---KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK 58
+ K + + +++LL GL +GKT L +L + N+ + + +
Sbjct: 5 ILRKLKSAPDQEVRILLL-GLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63
Query: 59 IVDLPGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVN 118
+ D+ G+ ++R + ++++ ++YV+D R + + + S V
Sbjct: 64 VWDIGGQRKIRPYWRSYFENT-DILIYVID---SADRKRFEETGQELTELLEEEKLSCVP 119
Query: 119 ILVCCNKQDQTLAKSSSVVKTLLQKEL 145
+L+ NKQD A +S + L
Sbjct: 120 VLIFANKQDLLTAAPASEIAEGLNLHT 146
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 36.1 bits (82), Expect = 0.001
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 2 LFFKFRKSSQKV-VLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIV 60
+F K S++++ +L+ GL +GKT + RL + + ++ NV +Y+ + +
Sbjct: 7 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVW 66
Query: 61 DLPGEDRLRNKFFDQYKSSAKGIVYVLDS 89
DL G+ +R ++ Y + +++V+DS
Sbjct: 67 DLGGQTSIRP-YWRCYYADTAAVIFVVDS 94
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 36.0 bits (82), Expect = 0.001
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS---LKENVGNFTYEKKNIK--IVDLPGED 66
K++L+ G S GK+ L R Y S + + + K +K I D G++
Sbjct: 8 KLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSS 90
R R Y + GI+ V D +
Sbjct: 67 RFRT-ITSSYYRGSHGIIIVYDVT 89
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 35.3 bits (80), Expect = 0.002
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
KVV+L G GK+ L + V + E E+ E + V + +
Sbjct: 5 KVVVL-GSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
F K + ++ + +V +++ NK D
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 35.3 bits (80), Expect = 0.002
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFES-----CTSLKENVGNFTYEKKNIKIVDLPGED 66
K +++ G + +GK+ L + + K+ + + N + ++I D G++
Sbjct: 7 KFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVYVLDS 89
R R+ Y A G + V D
Sbjct: 66 RFRS-VTRSYYRGAAGALLVYDI 87
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 33.7 bits (76), Expect = 0.007
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY------EKKNIKIVDLPGE 65
KV+L+ G S GKT L R + + K +++ D G+
Sbjct: 8 KVMLV-GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQ 93
+R R+ Y A ++ + D +
Sbjct: 67 ERFRS-VTHAYYRDAHALLLLYDVTNKA 93
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.6 bits (76), Expect = 0.007
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKE---NVGNFTYEKKNIK--IVDLPGED 66
K+VL+ G + GKT L R + + + + +K I D G++
Sbjct: 7 KIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 67 RLRNKFFDQYKSSAKGIVY 85
R R+ Y SA ++
Sbjct: 66 RFRS-ITQSYYRSANALIL 83
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.1 bits (74), Expect = 0.011
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
K++ L GL +GKT L L + + DL G + +
Sbjct: 2 KLLFL-GLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ-ARR 59
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQTLA 131
+ Y GIV+++D++ ++ E + + V ++ NK D A
Sbjct: 60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDAL---FNIAELKDVPFVILGNKIDAPNA 116
Query: 132 KSSSVVKTLLQKELNLVRRTKSNQLEDTNDV 162
S + ++ L L+ T S ++E V
Sbjct: 117 VSEAELR----SALGLLNTTGSQRIEGQRPV 143
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 31.8 bits (71), Expect = 0.032
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY-----EKKNIKIVDLPGED 66
KVVL+ G S GK+ L +R +++ S + +I D G++
Sbjct: 6 KVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 67 RLRNKFFDQYK-SSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
R R Y+ + +VY + + + + L S + I++ NK
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR------DHADSNIVIMLVGNK 118
Query: 126 QDQ 128
D
Sbjct: 119 SDL 121
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 31.6 bits (71), Expect = 0.049
Identities = 25/140 (17%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDR 67
+++ +++LL G SGK+ + ++ + F +K N + D+ G+
Sbjct: 4 RATHRLLLL-GAGESGKSTIVKQMRILHV---VLTSGIFETKFQVDKVNFHMFDVGGQRD 59
Query: 68 LRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQS-------SRVNIL 120
R + Q + I++V+ SS+ +R+ ++ + A +S ++++
Sbjct: 60 ERR-KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 121 VCCNKQDQTLAKSSSVVKTL 140
+ NKQD K + +
Sbjct: 119 LFLNKQDLLAEKVLAGKSKI 138
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 30.8 bits (68), Expect = 0.061
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN-----VGNFTYEKKNIKIVDLPGED 66
K++++ G S GKT L R ++ + + + E+ I++ D G++
Sbjct: 4 KIIVI-GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R R Y + +V+V D + + ++ + ++ + ++ NK
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYD---MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 119
Query: 127 D 127
D
Sbjct: 120 D 120
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 31.1 bits (69), Expect = 0.062
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 10 SQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSL 43
+ ++++L+G S +GK+ + R + S E +
Sbjct: 2 TTRMIILNGGSSAGKSGI-VRCLQSVLPEPWLAF 34
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.7 bits (65), Expect = 0.14
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 11 QKVVLLSGLSLSGKTLLFARLV 32
+K++L G SGK+ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFI 23
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.15
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
++++L GL +GKT + + +L N+ + + I D+ G+ LR+
Sbjct: 4 RLLML-GLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS- 61
Query: 72 FFDQYKSSAKGIVYVLDSSTVQ 93
++ Y S G+++V+DS+ Q
Sbjct: 62 YWRNYFESTDGLIWVVDSADRQ 83
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.6 bits (65), Expect = 0.16
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIK-----IVDLPGED 66
K+VLL G S GK+ L R V ++ E S + I D G++
Sbjct: 8 KLVLL-GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQ 93
R + Y A+ + V D + +
Sbjct: 67 RYHS-LAPMYYRGAQAAIVVYDITNEE 92
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.9 bits (66), Expect = 0.18
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 13 VVLLSGLSLSGKTLLFARL 31
++++ GL GKT + +L
Sbjct: 4 LIVMVGLPARGKTYISKKL 22
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 0.20
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSL-KENVGNFTYEKKNIKIVDLPGEDRLRN 70
++LLSG SGK+ + A + + +++ + + + +
Sbjct: 5 NILLLSGHPGSGKSTI-AEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 63
Query: 71 KFFDQY---KSSAKGIVYVLDS 89
+ + +G +LD
Sbjct: 64 MQIAADVAGRYAKEGYFVILDG 85
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.9 bits (63), Expect = 0.29
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
++++L GL +GKT + RL + + ++ NV TY+ ++ DL G +R
Sbjct: 7 RILIL-GLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65
Query: 72 FFDQYKSSAKGIVY 85
+ Y ++ I
Sbjct: 66 WRCYYSNTDAVIYV 79
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.0 bits (64), Expect = 0.29
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE--KKNIKIVDL 62
+ R + L+GLS SGK+ L L + + G+ K++ +
Sbjct: 18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEA 77
Query: 63 PGEDRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILAD 109
+ +R + + + + + RD A L+ +
Sbjct: 78 DRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATP 124
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.8 bits (63), Expect = 0.30
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKN-----IKIVDLPGED 66
K+V L G GKT L R +Y + + + +++ D G++
Sbjct: 2 KLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R R+ + SA +V T + + + + + + S V I++ NK
Sbjct: 61 RFRSLIPSYIRDSAAAVVV--YDITNVNSFQQTTKWIDDVR---TERGSDVIIMLVGNKT 115
Query: 127 D 127
D
Sbjct: 116 D 116
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.5 bits (62), Expect = 0.38
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
++ L+ GL SGKT + ++ E
Sbjct: 4 ELTLV-GLQYSGKTTFVNVIASGQFNEDMIP 33
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.5 bits (62), Expect = 0.42
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS-----LKENVGNFTYEKKNIKIVDLPGED 66
KV++L G S GKT L + V K+ + ++I D G++
Sbjct: 4 KVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 67 RLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQ 126
R ++ Y+ + ++ ++ D ++I A P+ + +++
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 127 DQTLAKSSSVVKTLLQKELN 146
+ ++ + + N
Sbjct: 123 LENRQVATKRAQAWCYSKNN 142
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.5 bits (62), Expect = 0.47
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 9 SSQKVVLLSGLSLSGKTLLFARLVYSKYFESC 40
+S K+VLL G + GK+ + R V + + E+
Sbjct: 2 TSIKLVLL-GEAAVGKSSIVLRFVSNDFAENK 32
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 0.81
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTY 52
KV+++ G GK+ L + +Y ++ E K +
Sbjct: 6 KVIMV-GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 45
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.5 bits (60), Expect = 0.82
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKEN---------------VGNFTYEKKN 56
K++ L G S GKT R +K+ + + K +
Sbjct: 7 KLLAL-GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 57 IKIVDLPGEDRLRNKFFDQYKSSAKGIVYV 86
+++ D G++R R+ + A G + +
Sbjct: 66 LQLWDTAGQERFRS-LTTAFFRDAMGFLLM 94
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.7 bits (60), Expect = 0.86
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 10 SQKVVLLSGLSLSGKTLLFARL 31
+ +L G+S SGK+ + + +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEV 26
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 0.89
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 6 FRKSSQKVVLLSGLSLSGKTLLFARLV 32
+ +VV+ G +GK+ +
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHL 35
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 0.94
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 13 VVLLSGLSLSGKTLLFARLVYSKYFE 38
+ L+G SGK + AR + +
Sbjct: 8 TIFLTGYMNSGKDAI-ARALQVTLNQ 32
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 0.97
Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS------LKENVGNFTYEKKNIKIVDLPGE 65
KV++L G S GKT L R V KY + + L + V + +++ D G+
Sbjct: 4 KVIIL-GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 66 DRLRNKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNK 125
+R ++ Y+ + ++ ++ +++ A+ + +++
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 126 Q 126
Sbjct: 123 D 123
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.4 bits (59), Expect = 1.0
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
K+V++ G GK+ + R + +
Sbjct: 4 KMVVV-GNGAVGKSSMIQRYCKGIFTKDYKK 33
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 1.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
KV LL G + GK+ + R V + +
Sbjct: 6 KVCLL-GDTGVGKSSIMWRFVEDSFDPNINP 35
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 1.1
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC 40
K+V++ G GK+ L + + S +
Sbjct: 8 KLVVV-GGGGVGKSALTIQFIQSYFVSDY 35
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
+V + G GK+ L R V + ES
Sbjct: 4 RVAVF-GAGGVGKSSLVLRFVKGTFRESYIP 33
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.3 bits (59), Expect = 1.2
Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 5/138 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENV--GNFTYEKKNIKIVDLPGEDRLR 69
K+V++ G GK+ L +L+ + + + E+ + + + L +
Sbjct: 5 KLVVV-GAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70 NKFFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQDQT 129
+ + K+ D+ + I V +++ NK D
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMVLVGNKCDLA 121
Query: 130 LAKSSSVVKTLLQKELNL 147
S L + +
Sbjct: 122 ARTVESRQAQDLARSYGI 139
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC--TSLKENVGNFTYEKKNIKIVDLPGEDRLR 69
K+ + G + GK+ L R + ++ T T + + + + L +
Sbjct: 4 KLAIF-GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 70 NKFFDQYKSSAKGIVYVLD 88
+ + +G V V D
Sbjct: 63 TIQREGHMRWGEGFVLVYD 81
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 1.6
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 2/116 (1%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
K+VL+ G +GKT R + ++ + + V + +
Sbjct: 5 KLVLV-GDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAESLYVILADPQVQSSRVNILVCCNKQD 127
I T R +++ D + I++C NK D
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 118
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 1.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
K+V++ G S GKT L + E+
Sbjct: 4 KIVVV-GDSQCGKTALLHVFAKDCFPENYVP 33
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.9 bits (58), Expect = 1.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTS 42
K V++ G GKT L +K+
Sbjct: 5 KCVVV-GDGAVGKTCLLISYTTNKFPSEYVP 34
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 1.7
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
K++LL G SGK+ ++ + + F + ++VD+ G+ R K
Sbjct: 4 KLLLL-GTGESGKSTFIKQMRI-IHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRK 61
Query: 72 FFDQY 76
+ +
Sbjct: 62 WIHCF 66
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 2.0
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
K+ +++G+ GK+ + A++ + + I + D +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKE-----------------ILDNQGINNKIINYGDFMLAT 44
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRDVAE 101
+ + + L +K D A+
Sbjct: 45 ALKLGYAKDRDEMRKLSVEKQKKLQIDAAK 74
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 2.7
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 5 KFRKSSQKVVLLSGLSLSGKTLL---FARLVYSKYFESCTSLKENVGNFTYEKKNIKIVD 61
K + + L+ GL +GK+ + + Y E +Y+ +++
Sbjct: 23 KLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQK 82
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVY 85
+ R + + +GIV
Sbjct: 83 EINKLVKRLPSLLKALKNIQGIVI 106
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 26.3 bits (57), Expect = 3.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARLV 32
+ K L G + +GKT + ++
Sbjct: 28 RRGVKHQTLLGATGTGKTFTISNVI 52
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 3.2
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYE----------KKNIKIVD 61
KVV+++G+ G T + + E + G+ +E + ++ +D
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 61
Query: 62 LPGEDRLRNKFFDQYKSSAKGIVYVLD 88
+ R++ + AK +D
Sbjct: 62 PETQKRIQKMAGRKIAEMAKESPVAVD 88
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 26.4 bits (57), Expect = 3.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARLV 32
+ ++ V L G + +GKT+ A+++
Sbjct: 25 RDGERFVTLLGATGTGKTVTMAKVI 49
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.8 bits (55), Expect = 3.4
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 13 VVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKI 59
V L+GLS +GKT + + + G+ + N +
Sbjct: 21 TVWLTGLSGAGKTTV-SMALEEYLVCHGIPCYTLDGDNIRQGLNKNL 66
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.7 bits (55), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESC 40
KV+LL G GK+ L R V +K+
Sbjct: 8 KVILL-GDGGVGKSSLMNRYVTNKFDTQL 35
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.8 bits (55), Expect = 4.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 11 QKVVLLSGLSLSGKTLLFARL 31
+K+ +++G + GK+ RL
Sbjct: 2 KKLYIITGPAGVGKSTTCKRL 22
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 4.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 12 KVVLLSGLSLSGKTLLFARLV 32
+ V L+G GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKAS 22
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.5 bits (55), Expect = 4.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARL 31
+ + L GL SGKT A+L
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTAAKL 30
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.2 bits (54), Expect = 5.0
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 12 KVVLLSGLSLSGKTLLFARLVYSKYFESCTSLKENVGNFTYEKKNIKIVDLPGEDRLRNK 71
K++LL G SGK+ ++ + + + +F + K+VD+ G R K
Sbjct: 4 KILLL-GAGESGKSTFLKQMRIIHGQDPTKGI--HEYDFEIKNVPFKMVDV-GGQRSERK 59
Query: 72 FFDQYKSSAKGIVYVLDSSTVQKTLRD 98
+ + S I++++ SS + L +
Sbjct: 60 RWFECFDSVTSILFLVSSSEFDQVLME 86
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 6.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 8 KSSQKVVLLSGLSLSGKTLLFARL 31
+ +VVL+ G++ GKT A+L
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTIAKL 26
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 23.5 bits (51), Expect = 9.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 171 NPDKDFEFSDLYNQVSFCDTTGLDS 195
N + F D ++ F D G +
Sbjct: 54 NQEDIILFRDRFDGYVFLDNKGQEY 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.364
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 692,398
Number of extensions: 28384
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 64
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)