Query psy4436
Match_columns 171
No_of_seqs 129 out of 1636
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 16:59:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12689 Acid_PPase: Acid Phos 100.0 1.4E-35 3.1E-40 210.0 14.7 156 15-170 2-169 (169)
2 TIGR01685 MDP-1 magnesium-depe 100.0 9.4E-30 2E-34 181.8 12.9 154 15-169 1-174 (174)
3 PLN02770 haloacid dehalogenase 99.9 1E-25 2.2E-30 170.5 7.2 106 54-160 106-216 (248)
4 PRK13226 phosphoglycolate phos 99.9 6.6E-25 1.4E-29 164.2 7.4 102 54-156 93-199 (229)
5 PRK10826 2-deoxyglucose-6-phos 99.9 1.1E-24 2.3E-29 162.3 8.4 102 54-156 90-196 (222)
6 PRK13288 pyrophosphatase PpaX; 99.9 9.7E-25 2.1E-29 161.6 7.1 103 53-156 79-186 (214)
7 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 5.4E-24 1.2E-28 146.4 10.1 120 17-152 1-131 (132)
8 PRK06769 hypothetical protein; 99.9 6.1E-24 1.3E-28 152.6 10.1 125 16-156 4-141 (173)
9 TIGR01656 Histidinol-ppas hist 99.9 7.8E-24 1.7E-28 148.3 9.5 125 17-154 1-147 (147)
10 TIGR02253 CTE7 HAD superfamily 99.9 2.8E-24 6.1E-29 159.6 7.3 101 55-156 93-199 (221)
11 PRK14988 GMP/IMP nucleotidase; 99.9 3.1E-24 6.6E-29 160.1 7.5 102 53-155 90-197 (224)
12 TIGR01428 HAD_type_II 2-haloal 99.9 2E-24 4.3E-29 158.1 6.1 100 54-154 90-194 (198)
13 COG0546 Gph Predicted phosphat 99.9 4.3E-24 9.2E-29 159.0 7.0 101 55-156 88-193 (220)
14 PLN03243 haloacid dehalogenase 99.9 5.3E-24 1.1E-28 161.9 6.8 99 54-153 107-210 (260)
15 PRK11587 putative phosphatase; 99.9 1.5E-23 3.2E-28 155.8 9.0 102 53-156 80-186 (218)
16 TIGR01422 phosphonatase phosph 99.9 1.4E-23 3.1E-28 159.1 7.6 102 54-156 97-205 (253)
17 TIGR01449 PGP_bact 2-phosphogl 99.9 6.8E-24 1.5E-28 156.6 5.5 102 54-156 83-189 (213)
18 TIGR01454 AHBA_synth_RP 3-amin 99.9 8.8E-24 1.9E-28 155.5 5.5 103 53-156 72-179 (205)
19 PRK08942 D,D-heptose 1,7-bisph 99.9 1.6E-22 3.6E-27 146.2 11.7 127 15-157 2-152 (181)
20 PRK13225 phosphoglycolate phos 99.9 3.3E-23 7.1E-28 158.6 7.9 104 53-157 139-244 (273)
21 PLN02575 haloacid dehalogenase 99.9 2.2E-23 4.7E-28 164.6 7.0 104 54-158 214-322 (381)
22 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1.8E-22 4E-27 145.3 11.2 123 17-156 2-155 (176)
23 TIGR03351 PhnX-like phosphonat 99.9 9.7E-23 2.1E-27 151.4 10.0 102 54-156 85-195 (220)
24 PRK13223 phosphoglycolate phos 99.9 2.1E-23 4.5E-28 159.8 6.5 102 54-156 99-205 (272)
25 TIGR01261 hisB_Nterm histidino 99.9 3.4E-22 7.4E-27 141.8 11.6 132 17-162 2-158 (161)
26 PRK13478 phosphonoacetaldehyde 99.9 3.9E-23 8.4E-28 157.9 6.8 102 54-156 99-207 (267)
27 COG0637 Predicted phosphatase/ 99.9 3.5E-23 7.7E-28 154.1 6.0 103 53-156 83-190 (221)
28 PLN02940 riboflavin kinase 99.9 5.1E-23 1.1E-27 164.3 6.7 102 54-156 91-198 (382)
29 PRK13222 phosphoglycolate phos 99.9 7.4E-23 1.6E-27 152.3 7.0 102 54-156 91-197 (226)
30 PRK10725 fructose-1-P/6-phosph 99.9 6.3E-23 1.4E-27 148.8 5.5 96 54-152 86-186 (188)
31 PRK09449 dUMP phosphatase; Pro 99.9 1.3E-22 2.8E-27 151.1 6.4 98 54-153 93-197 (224)
32 PRK09456 ?-D-glucose-1-phospha 99.9 2.7E-22 5.7E-27 147.1 7.2 105 55-160 83-193 (199)
33 COG4996 Predicted phosphatase 99.9 7.2E-21 1.6E-25 126.7 12.9 134 17-151 1-144 (164)
34 TIGR02254 YjjG/YfnB HAD superf 99.9 2.9E-22 6.4E-27 148.8 6.9 100 54-155 95-201 (224)
35 TIGR00338 serB phosphoserine p 99.9 3.1E-22 6.7E-27 148.6 6.8 145 4-149 2-192 (219)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 2.9E-22 6.4E-27 147.9 6.3 102 54-155 92-199 (211)
37 TIGR01990 bPGM beta-phosphoglu 99.9 1.1E-21 2.3E-26 141.8 8.7 95 55-152 86-185 (185)
38 TIGR01681 HAD-SF-IIIC HAD-supe 99.9 1E-21 2.2E-26 134.5 7.5 116 17-143 1-126 (128)
39 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.6E-21 3.4E-26 141.0 8.8 95 54-151 86-185 (185)
40 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1E-21 2.2E-26 141.5 7.4 95 55-151 84-183 (183)
41 TIGR01668 YqeG_hyp_ppase HAD s 99.9 4.1E-21 8.8E-26 137.6 10.2 116 15-156 24-140 (170)
42 PF13419 HAD_2: Haloacid dehal 99.9 2.9E-21 6.4E-26 137.4 9.0 98 53-151 74-176 (176)
43 TIGR02252 DREG-2 REG-2-like, H 99.9 1.8E-21 3.8E-26 142.9 7.5 94 55-150 104-203 (203)
44 TIGR01993 Pyr-5-nucltdase pyri 99.8 1.6E-21 3.4E-26 141.2 5.9 94 54-151 82-184 (184)
45 PLN02779 haloacid dehalogenase 99.8 6.8E-21 1.5E-25 146.9 9.5 101 55-156 143-250 (286)
46 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 7.2E-21 1.6E-25 135.7 8.6 121 16-150 13-160 (166)
47 PRK10563 6-phosphogluconate ph 99.8 1.7E-21 3.6E-26 144.9 5.2 95 54-152 86-186 (221)
48 COG1011 Predicted hydrolase (H 99.8 3.6E-21 7.8E-26 143.4 6.9 99 54-154 97-201 (229)
49 PRK10748 flavin mononucleotide 99.8 8E-21 1.7E-25 142.9 6.3 94 54-154 111-210 (238)
50 TIGR02726 phenyl_P_delta pheny 99.8 5.1E-20 1.1E-24 131.3 9.8 118 15-151 6-124 (169)
51 TIGR01670 YrbI-phosphatas 3-de 99.8 2.8E-20 6E-25 131.3 8.0 121 16-155 1-121 (154)
52 PRK05446 imidazole glycerol-ph 99.8 2.7E-19 5.8E-24 140.6 14.2 135 16-165 2-162 (354)
53 PHA02597 30.2 hypothetical pro 99.8 3.4E-20 7.4E-25 135.6 7.9 100 53-156 71-178 (197)
54 PRK06698 bifunctional 5'-methy 99.8 1.4E-20 3E-25 153.8 6.1 100 54-156 328-431 (459)
55 TIGR01686 FkbH FkbH-like domai 99.8 8.8E-20 1.9E-24 142.8 9.6 120 15-147 2-125 (320)
56 PLN02919 haloacid dehalogenase 99.8 5E-20 1.1E-24 162.3 9.0 105 56-161 161-271 (1057)
57 TIGR01691 enolase-ppase 2,3-di 99.8 5.9E-20 1.3E-24 136.2 7.9 101 53-154 92-198 (220)
58 cd01427 HAD_like Haloacid deha 99.8 1.5E-19 3.2E-24 123.4 9.0 118 18-151 1-139 (139)
59 TIGR01672 AphA HAD superfamily 99.8 8.7E-20 1.9E-24 136.5 7.5 135 14-156 60-215 (237)
60 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 9.7E-20 2.1E-24 128.1 6.5 91 52-145 60-154 (154)
61 PLN02954 phosphoserine phospha 99.8 8.7E-20 1.9E-24 135.9 6.2 143 7-154 3-198 (224)
62 COG2179 Predicted hydrolase of 99.8 5.4E-19 1.2E-23 122.7 9.6 111 16-153 28-139 (175)
63 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 1.4E-19 3E-24 132.4 6.9 100 54-154 78-192 (201)
64 PRK09484 3-deoxy-D-manno-octul 99.8 5.9E-19 1.3E-23 127.8 8.4 118 15-152 20-138 (183)
65 KOG3085|consensus 99.8 6.6E-19 1.4E-23 130.5 8.7 102 53-156 110-217 (237)
66 PHA02530 pseT polynucleotide k 99.8 3.7E-18 8.1E-23 132.4 9.7 129 15-155 157-299 (300)
67 PRK11133 serB phosphoserine ph 99.7 1.3E-18 2.7E-23 135.8 5.7 135 15-150 109-289 (322)
68 PRK10444 UMP phosphatase; Prov 99.7 2.2E-17 4.8E-22 124.8 10.7 118 16-157 1-224 (248)
69 PLN02645 phosphoglycolate phos 99.7 7.2E-18 1.6E-22 131.5 8.1 50 108-157 230-280 (311)
70 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 2.8E-17 6.1E-22 124.5 10.7 50 107-156 177-227 (249)
71 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 1.5E-17 3.3E-22 126.4 9.2 120 16-155 1-227 (257)
72 smart00577 CPDc catalytic doma 99.7 1.2E-17 2.6E-22 117.0 7.7 131 17-151 3-141 (148)
73 TIGR01452 PGP_euk phosphoglyco 99.7 3.2E-17 6.9E-22 126.1 10.4 55 107-161 201-257 (279)
74 COG0241 HisB Histidinol phosph 99.7 4.6E-17 1E-21 116.2 9.9 124 15-155 4-152 (181)
75 TIGR01493 HAD-SF-IA-v2 Haloaci 99.7 1.8E-18 4E-23 124.0 1.1 83 54-144 88-175 (175)
76 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 2.9E-17 6.2E-22 118.8 7.2 91 54-148 70-185 (188)
77 PTZ00445 p36-lilke protein; Pr 99.7 3.5E-17 7.6E-22 118.5 6.8 131 15-153 42-206 (219)
78 PLN02811 hydrolase 99.7 9.8E-17 2.1E-21 119.3 8.6 103 54-156 76-188 (220)
79 PRK11009 aphA acid phosphatase 99.7 1E-16 2.2E-21 119.9 8.6 132 18-156 65-215 (237)
80 PRK09552 mtnX 2-hydroxy-3-keto 99.7 4.8E-17 1E-21 121.0 6.2 95 53-149 71-184 (219)
81 COG0647 NagD Predicted sugar p 99.7 6.1E-16 1.3E-20 117.3 10.5 55 107-161 189-245 (269)
82 KOG3109|consensus 99.7 2E-16 4.4E-21 114.3 7.3 97 54-153 98-206 (244)
83 COG1778 Low specificity phosph 99.6 2.8E-16 6.1E-21 108.0 6.2 117 15-151 7-125 (170)
84 PRK13582 thrH phosphoserine ph 99.6 2.8E-16 6E-21 115.4 6.5 94 53-148 65-167 (205)
85 TIGR01663 PNK-3'Pase polynucle 99.6 1.2E-15 2.7E-20 125.3 9.4 118 15-146 167-305 (526)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 7E-15 1.5E-19 110.9 12.2 129 14-167 6-150 (242)
87 KOG2914|consensus 99.6 4.1E-16 9E-21 115.1 4.6 100 53-153 89-197 (222)
88 COG0560 SerB Phosphoserine pho 99.6 7.3E-16 1.6E-20 113.9 5.0 137 14-151 3-186 (212)
89 PF09419 PGP_phosphatase: Mito 99.6 8E-15 1.7E-19 103.9 8.8 114 15-155 40-167 (168)
90 TIGR01488 HAD-SF-IB Haloacid D 99.6 1.6E-15 3.4E-20 108.8 5.0 91 53-144 70-177 (177)
91 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 8.4E-16 1.8E-20 112.6 2.9 96 56-152 87-198 (202)
92 KOG2882|consensus 99.6 3.7E-14 7.9E-19 107.3 11.2 57 107-163 223-281 (306)
93 TIGR01548 HAD-SF-IA-hyp1 haloa 99.6 1E-14 2.2E-19 106.7 7.8 87 57-144 107-197 (197)
94 TIGR03333 salvage_mtnX 2-hydro 99.6 4E-15 8.7E-20 110.3 5.3 92 54-146 68-177 (214)
95 TIGR01460 HAD-SF-IIA Haloacid 99.5 4E-14 8.6E-19 106.5 9.6 48 107-154 187-236 (236)
96 PF08645 PNK3P: Polynucleotide 99.5 5.6E-15 1.2E-19 104.6 4.4 120 17-148 1-152 (159)
97 TIGR02137 HSK-PSP phosphoserin 99.5 1.5E-14 3.3E-19 106.3 5.3 94 54-152 66-171 (203)
98 PF06888 Put_Phosphatase: Puta 99.5 1.7E-13 3.7E-18 102.2 10.4 106 53-159 68-204 (234)
99 PRK10530 pyridoxal phosphate ( 99.5 3.2E-13 6.9E-18 103.2 11.0 44 110-154 200-243 (272)
100 PRK01158 phosphoglycolate phos 99.5 3E-13 6.4E-18 101.0 10.4 114 16-154 3-201 (230)
101 KOG4549|consensus 99.5 5.8E-13 1.3E-17 88.3 10.2 127 12-139 1-136 (144)
102 TIGR01487 SPP-like sucrose-pho 99.5 5.6E-13 1.2E-17 98.7 9.6 114 16-154 1-191 (215)
103 TIGR02251 HIF-SF_euk Dullard-l 99.4 5.7E-13 1.2E-17 94.7 8.9 142 17-168 2-158 (162)
104 PRK15126 thiamin pyrimidine py 99.4 1.3E-12 2.9E-17 100.0 9.9 60 15-98 1-60 (272)
105 TIGR01533 lipo_e_P4 5'-nucleot 99.4 8.7E-13 1.9E-17 100.3 8.2 121 15-141 74-204 (266)
106 KOG3040|consensus 99.4 3.4E-12 7.4E-17 92.0 10.2 116 15-154 6-228 (262)
107 PRK10976 putative hydrolase; P 99.4 2.6E-12 5.7E-17 98.0 10.2 45 110-155 191-235 (266)
108 COG0561 Cof Predicted hydrolas 99.4 3.1E-12 6.6E-17 97.6 10.4 60 15-98 2-61 (264)
109 TIGR01482 SPP-subfamily Sucros 99.4 3.4E-12 7.4E-17 94.9 9.8 111 19-154 1-193 (225)
110 PRK10513 sugar phosphate phosp 99.4 7.3E-12 1.6E-16 95.7 10.4 57 16-96 3-59 (270)
111 PF00702 Hydrolase: haloacid d 99.3 3.8E-12 8.3E-17 93.5 7.7 89 54-145 125-215 (215)
112 TIGR01485 SPP_plant-cyano sucr 99.3 1.2E-11 2.5E-16 93.7 9.9 117 18-155 3-213 (249)
113 PRK00192 mannosyl-3-phosphogly 99.3 1.4E-11 2.9E-16 94.6 10.0 60 15-98 3-62 (273)
114 PF08282 Hydrolase_3: haloacid 99.3 1.8E-11 4E-16 91.6 10.2 112 19-155 1-231 (254)
115 TIGR01684 viral_ppase viral ph 99.3 8.9E-12 1.9E-16 95.0 7.7 102 14-137 124-262 (301)
116 TIGR00099 Cof-subfamily Cof su 99.3 2.6E-11 5.7E-16 92.0 10.0 43 110-153 189-231 (256)
117 PRK08238 hypothetical protein; 99.3 8.1E-12 1.8E-16 102.4 7.5 94 53-156 69-169 (479)
118 COG4229 Predicted enolase-phos 99.3 5.6E-12 1.2E-16 89.0 5.2 99 53-152 100-204 (229)
119 KOG1615|consensus 99.3 1.5E-11 3.3E-16 87.7 6.5 134 14-151 14-198 (227)
120 TIGR02463 MPGP_rel mannosyl-3- 99.2 1.4E-10 2.9E-15 86.2 10.1 40 110-149 180-219 (221)
121 PF13344 Hydrolase_6: Haloacid 99.2 1.4E-10 3.1E-15 76.0 8.6 97 19-145 1-99 (101)
122 PLN02887 hydrolase family prot 99.2 1.6E-10 3.6E-15 96.5 11.0 58 15-96 307-364 (580)
123 COG3882 FkbH Predicted enzyme 99.2 1.4E-10 3E-15 92.9 10.0 128 11-146 217-348 (574)
124 PHA03398 viral phosphatase sup 99.2 6E-11 1.3E-15 90.6 7.6 102 14-137 126-264 (303)
125 KOG3120|consensus 99.2 7.6E-11 1.7E-15 85.7 6.9 105 53-158 81-216 (256)
126 TIGR01456 CECR5 HAD-superfamil 99.2 2.5E-10 5.4E-15 89.6 10.4 48 107-154 232-293 (321)
127 TIGR02244 HAD-IG-Ncltidse HAD 99.2 2E-10 4.4E-15 90.1 9.6 101 54-155 182-326 (343)
128 PRK03669 mannosyl-3-phosphogly 99.2 3.5E-10 7.5E-15 86.7 10.5 39 110-148 188-229 (271)
129 TIGR01484 HAD-SF-IIB HAD-super 99.1 3E-10 6.6E-15 83.3 8.6 41 108-148 162-202 (204)
130 PF13242 Hydrolase_like: HAD-h 99.1 8.1E-11 1.8E-15 73.0 4.6 53 106-158 2-55 (75)
131 PRK10187 trehalose-6-phosphate 99.1 2.9E-09 6.4E-14 81.5 13.8 118 17-153 15-221 (266)
132 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.1 3.5E-11 7.7E-16 90.7 2.6 93 58-152 140-241 (242)
133 TIGR02471 sucr_syn_bact_C sucr 99.1 5.2E-10 1.1E-14 84.0 8.1 46 108-154 158-203 (236)
134 PRK11590 hypothetical protein; 99.1 4.3E-10 9.2E-15 83.2 7.2 96 55-152 94-202 (211)
135 TIGR01544 HAD-SF-IE haloacid d 99.1 3.5E-09 7.7E-14 80.8 11.9 91 53-144 118-230 (277)
136 TIGR02250 FCP1_euk FCP1-like p 99.1 1.8E-09 3.8E-14 76.2 9.3 124 15-140 5-142 (156)
137 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 2.1E-09 4.6E-14 81.6 9.6 44 110-154 177-222 (256)
138 TIGR01525 ATPase-IB_hvy heavy 99.0 6.6E-10 1.4E-14 93.2 6.9 86 54-146 382-468 (556)
139 PTZ00174 phosphomannomutase; P 99.0 9.6E-09 2.1E-13 77.8 12.5 54 15-92 4-57 (247)
140 smart00775 LNS2 LNS2 domain. T 99.0 3.2E-09 7E-14 75.0 8.9 117 18-147 1-141 (157)
141 TIGR01545 YfhB_g-proteo haloac 99.0 1.4E-09 3.1E-14 80.4 6.4 93 55-148 93-198 (210)
142 TIGR01511 ATPase-IB1_Cu copper 98.9 3.6E-09 7.9E-14 88.8 8.7 85 54-146 403-487 (562)
143 PRK14502 bifunctional mannosyl 98.9 3.3E-08 7.2E-13 83.3 12.9 41 110-150 614-656 (694)
144 TIGR01512 ATPase-IB2_Cd heavy 98.9 2.6E-09 5.7E-14 89.2 6.2 85 55-146 361-446 (536)
145 PF03767 Acid_phosphat_B: HAD 98.9 8.4E-10 1.8E-14 82.6 2.6 134 15-153 71-223 (229)
146 TIGR00685 T6PP trehalose-phosp 98.9 2.1E-08 4.5E-13 75.8 9.9 44 109-152 167-217 (244)
147 PF03031 NIF: NLI interacting 98.8 5.5E-09 1.2E-13 73.8 5.5 128 17-151 1-132 (159)
148 PRK12702 mannosyl-3-phosphogly 98.8 9.2E-09 2E-13 78.8 6.6 61 16-100 1-61 (302)
149 TIGR01689 EcbF-BcbF capsule bi 98.8 2E-08 4.2E-13 68.2 7.4 51 16-83 1-51 (126)
150 COG4359 Uncharacterized conser 98.8 1.3E-08 2.8E-13 72.2 6.4 88 54-146 71-180 (220)
151 PLN02382 probable sucrose-phos 98.8 7.3E-08 1.6E-12 78.1 11.5 47 109-155 175-224 (413)
152 TIGR01675 plant-AP plant acid 98.7 6.6E-08 1.4E-12 72.0 8.6 136 15-154 76-224 (229)
153 PF05116 S6PP: Sucrose-6F-phos 98.7 1.2E-07 2.6E-12 71.9 8.6 48 108-156 164-211 (247)
154 PLN02423 phosphomannomutase 98.7 3.7E-07 8E-12 69.1 11.0 33 124-156 199-235 (245)
155 TIGR02461 osmo_MPG_phos mannos 98.7 5.2E-08 1.1E-12 72.8 6.0 58 18-100 1-58 (225)
156 PRK14501 putative bifunctional 98.7 3.4E-07 7.4E-12 79.2 11.4 61 16-95 492-553 (726)
157 PRK10671 copA copper exporting 98.6 1.8E-07 3.8E-12 82.1 8.4 91 56-154 650-740 (834)
158 PF06941 NT5C: 5' nucleotidase 98.6 7E-08 1.5E-12 70.3 4.6 90 53-156 70-166 (191)
159 TIGR01680 Veg_Stor_Prot vegeta 98.6 4.9E-07 1.1E-11 68.6 9.1 136 16-154 101-251 (275)
160 PF11019 DUF2608: Protein of u 98.6 5.2E-07 1.1E-11 68.5 9.0 100 53-152 78-209 (252)
161 PF08235 LNS2: LNS2 (Lipin/Ned 98.5 7E-07 1.5E-11 62.6 8.2 117 18-147 1-141 (157)
162 PLN02205 alpha,alpha-trehalose 98.5 1.9E-06 4.1E-11 75.5 12.4 58 15-93 595-653 (854)
163 TIGR01522 ATPase-IIA2_Ca golgi 98.5 6.2E-07 1.3E-11 79.1 8.8 91 55-146 527-638 (884)
164 PF12710 HAD: haloacid dehalog 98.5 6.6E-07 1.4E-11 64.6 7.2 83 58-142 87-192 (192)
165 COG3769 Predicted hydrolase (H 98.5 2.3E-06 5E-11 62.7 9.7 59 15-98 6-64 (274)
166 COG2503 Predicted secreted aci 98.4 1.4E-06 2.9E-11 64.7 8.2 121 15-141 78-209 (274)
167 COG4087 Soluble P-type ATPase 98.4 3.7E-06 8.1E-11 56.7 9.0 94 54-153 28-121 (152)
168 KOG2961|consensus 98.4 3.2E-06 6.8E-11 58.5 8.0 115 15-156 42-171 (190)
169 PLN02580 trehalose-phosphatase 98.4 1.1E-05 2.3E-10 64.6 12.0 54 18-91 121-174 (384)
170 PF05152 DUF705: Protein of un 98.3 3.1E-06 6.6E-11 64.3 7.5 103 14-137 120-258 (297)
171 TIGR02245 HAD_IIID1 HAD-superf 98.3 1.2E-05 2.7E-10 58.6 10.1 111 16-146 21-150 (195)
172 PRK11033 zntA zinc/cadmium/mer 98.2 3.9E-06 8.5E-11 72.8 7.5 82 56-146 568-649 (741)
173 PF05761 5_nucleotid: 5' nucle 98.2 8.3E-06 1.8E-10 66.6 7.6 103 53-156 180-328 (448)
174 KOG2630|consensus 98.1 1.2E-05 2.7E-10 59.2 7.5 95 55-152 122-224 (254)
175 KOG2134|consensus 98.1 1.9E-05 4.1E-10 62.4 7.4 111 15-136 74-202 (422)
176 TIGR01116 ATPase-IIA1_Ca sarco 98.0 3.6E-05 7.8E-10 68.4 9.1 98 55-154 536-658 (917)
177 COG2217 ZntA Cation transport 98.0 1.7E-05 3.7E-10 68.1 6.2 84 56-146 537-620 (713)
178 TIGR01497 kdpB K+-transporting 97.9 4.9E-05 1.1E-09 65.1 7.5 92 56-155 446-537 (675)
179 COG1877 OtsB Trehalose-6-phosp 97.9 0.00018 3.8E-09 55.0 9.7 63 15-96 17-80 (266)
180 COG3700 AphA Acid phosphatase 97.9 2.1E-05 4.7E-10 55.9 4.3 134 15-152 62-211 (237)
181 PLN03017 trehalose-phosphatase 97.8 4.5E-05 9.7E-10 60.7 5.5 55 17-91 112-166 (366)
182 PRK14010 potassium-transportin 97.8 0.00013 2.8E-09 62.6 8.5 93 56-156 441-533 (673)
183 PRK01122 potassium-transportin 97.7 0.00011 2.4E-09 63.0 7.1 92 56-155 445-536 (679)
184 PF02358 Trehalose_PPase: Treh 97.7 6.6E-05 1.4E-09 56.4 4.9 52 20-90 1-53 (235)
185 PLN02151 trehalose-phosphatase 97.7 7.6E-05 1.6E-09 59.2 5.1 56 17-92 99-154 (354)
186 TIGR01647 ATPase-IIIA_H plasma 97.5 0.00046 1E-08 60.3 7.4 99 55-155 441-563 (755)
187 PF06437 ISN1: IMP-specific 5' 97.4 0.00032 6.9E-09 55.6 5.6 49 15-84 146-194 (408)
188 TIGR01524 ATPase-IIIB_Mg magne 97.4 0.00051 1.1E-08 60.9 7.4 99 55-155 514-631 (867)
189 KOG0207|consensus 97.4 0.00047 1E-08 59.9 6.8 84 55-145 722-805 (951)
190 PRK10517 magnesium-transportin 97.4 0.00059 1.3E-08 60.7 7.3 99 55-155 549-666 (902)
191 TIGR01517 ATPase-IIB_Ca plasma 97.3 0.00079 1.7E-08 60.2 7.6 90 56-146 579-689 (941)
192 PRK15122 magnesium-transportin 97.3 0.00067 1.4E-08 60.4 7.1 99 55-155 549-666 (903)
193 KOG1618|consensus 97.1 0.0023 5E-08 49.7 6.9 101 18-150 37-144 (389)
194 TIGR01523 ATPase-IID_K-Na pota 97.0 0.0028 6.1E-08 57.3 8.1 91 56-147 646-767 (1053)
195 COG5610 Predicted hydrolase (H 97.0 0.0049 1.1E-07 50.2 7.9 94 58-151 101-201 (635)
196 TIGR01106 ATPase-IIC_X-K sodiu 96.9 0.0044 9.4E-08 55.9 8.1 91 56-147 568-705 (997)
197 KOG1605|consensus 96.9 0.00053 1.1E-08 52.2 2.0 131 16-151 89-227 (262)
198 TIGR01658 EYA-cons_domain eyes 96.9 0.004 8.7E-08 46.7 6.3 86 73-160 177-265 (274)
199 TIGR01494 ATPase_P-type ATPase 96.9 0.0044 9.5E-08 51.7 7.4 81 56-146 347-427 (499)
200 KOG3189|consensus 96.9 0.0034 7.4E-08 45.7 5.7 42 18-83 13-54 (252)
201 KOG2116|consensus 96.8 0.0039 8.5E-08 52.6 6.6 120 17-148 531-673 (738)
202 COG0474 MgtA Cation transport 96.8 0.0057 1.2E-07 54.7 8.1 100 54-154 545-667 (917)
203 PLN03064 alpha,alpha-trehalose 96.7 0.0036 7.8E-08 55.6 5.6 69 17-95 592-661 (934)
204 PLN03063 alpha,alpha-trehalose 96.6 0.0043 9.4E-08 54.6 5.8 61 17-93 508-569 (797)
205 TIGR01548 HAD-SF-IA-hyp1 haloa 96.4 0.0011 2.4E-08 48.3 0.7 16 17-32 1-16 (197)
206 KOG0202|consensus 96.1 0.026 5.6E-07 49.3 7.4 91 55-146 583-698 (972)
207 COG5663 Uncharacterized conser 96.1 0.0077 1.7E-07 42.6 3.6 92 56-158 72-167 (194)
208 KOG2470|consensus 96.1 0.0072 1.6E-07 47.7 3.7 95 56-151 240-374 (510)
209 TIGR01657 P-ATPase-V P-type AT 96.0 0.045 9.8E-07 49.8 8.7 41 56-97 656-696 (1054)
210 PF05822 UMPH-1: Pyrimidine 5' 95.8 0.026 5.6E-07 42.7 5.3 90 53-144 87-198 (246)
211 COG2216 KdpB High-affinity K+ 95.7 0.058 1.2E-06 44.9 7.3 92 56-155 447-538 (681)
212 PF06189 5-nucleotidase: 5'-nu 95.5 0.018 3.9E-07 43.7 3.8 125 19-156 124-262 (264)
213 KOG3107|consensus 95.5 0.054 1.2E-06 43.2 6.5 91 73-166 371-465 (468)
214 TIGR02461 osmo_MPG_phos mannos 95.3 0.019 4.1E-07 42.9 3.2 42 108-149 180-223 (225)
215 COG4850 Uncharacterized conser 95.2 0.083 1.8E-06 41.4 6.4 113 18-138 163-291 (373)
216 COG5083 SMP2 Uncharacterized p 95.2 0.023 5E-07 46.1 3.5 122 14-147 373-516 (580)
217 TIGR01652 ATPase-Plipid phosph 95.0 0.15 3.4E-06 46.5 8.5 42 55-97 630-671 (1057)
218 KOG2469|consensus 94.3 0.26 5.6E-06 39.8 7.4 97 57-154 199-335 (424)
219 PF00702 Hydrolase: haloacid d 93.7 0.033 7.1E-07 40.5 1.3 17 16-32 1-17 (215)
220 COG4030 Uncharacterized protei 93.7 0.21 4.5E-06 37.5 5.4 44 53-98 80-123 (315)
221 PF04312 DUF460: Protein of un 93.6 0.39 8.4E-06 33.0 6.3 58 17-97 44-102 (138)
222 PF12710 HAD: haloacid dehalog 93.6 0.04 8.6E-07 39.4 1.6 13 19-31 1-13 (192)
223 COG0731 Fe-S oxidoreductases [ 93.5 0.27 5.9E-06 38.3 6.0 35 54-88 90-125 (296)
224 KOG0209|consensus 93.3 0.36 7.8E-06 42.6 7.0 44 54-98 673-716 (1160)
225 KOG2832|consensus 92.1 0.96 2.1E-05 36.1 7.4 103 16-136 189-294 (393)
226 TIGR02468 sucrsPsyn_pln sucros 91.5 2.7 5.9E-05 38.4 10.4 45 108-153 955-1002(1050)
227 KOG0204|consensus 91.0 1.2 2.6E-05 39.6 7.4 95 52-147 643-760 (1034)
228 cd04728 ThiG Thiazole synthase 90.7 2.3 4.9E-05 32.3 7.9 100 50-156 98-208 (248)
229 PRK00208 thiG thiazole synthas 90.4 2.5 5.3E-05 32.1 7.8 99 51-156 99-208 (250)
230 KOG0210|consensus 90.1 0.7 1.5E-05 40.1 5.2 87 56-146 658-802 (1051)
231 PRK08005 epimerase; Validated 89.5 2.5 5.4E-05 31.3 7.2 110 59-168 93-208 (210)
232 KOG3128|consensus 87.9 1.9 4.2E-05 32.9 5.7 89 55-144 137-247 (298)
233 COG0036 Rpe Pentose-5-phosphat 87.7 5.6 0.00012 29.7 8.0 112 57-168 94-214 (220)
234 TIGR02329 propionate_PrpR prop 85.8 6.7 0.00014 33.3 8.5 88 60-154 85-172 (526)
235 TIGR02495 NrdG2 anaerobic ribo 85.6 8.3 0.00018 27.6 8.1 36 53-88 71-106 (191)
236 PLN02177 glycerol-3-phosphate 84.2 0.59 1.3E-05 39.2 1.6 80 64-146 115-209 (497)
237 KOG0323|consensus 83.1 5.2 0.00011 34.6 6.7 85 54-142 199-287 (635)
238 PRK08745 ribulose-phosphate 3- 82.6 9.2 0.0002 28.6 7.3 95 59-153 97-200 (223)
239 COG0761 lytB 4-Hydroxy-3-methy 82.4 8.6 0.00019 29.9 7.1 89 58-156 170-268 (294)
240 PRK09348 glyQ glycyl-tRNA synt 82.2 3 6.5E-05 31.8 4.4 39 112-150 93-134 (283)
241 PF04413 Glycos_transf_N: 3-De 81.9 11 0.00024 27.3 7.3 87 60-153 36-126 (186)
242 PF06506 PrpR_N: Propionate ca 81.7 1.9 4.2E-05 30.8 3.3 93 56-155 58-153 (176)
243 cd00733 GlyRS_alpha_core Class 81.5 3.2 6.9E-05 31.5 4.4 39 112-150 89-130 (279)
244 PRK15424 propionate catabolism 81.2 13 0.00028 31.7 8.4 88 60-154 95-182 (538)
245 PLN02334 ribulose-phosphate 3- 80.9 21 0.00045 26.6 8.9 108 59-168 102-219 (229)
246 TIGR00388 glyQ glycyl-tRNA syn 80.5 3.7 8E-05 31.5 4.4 39 112-150 90-131 (293)
247 PF06073 DUF934: Bacterial pro 78.8 5.8 0.00013 26.3 4.5 59 111-170 35-95 (110)
248 PRK08883 ribulose-phosphate 3- 78.0 8.4 0.00018 28.7 5.8 95 59-153 93-196 (220)
249 PRK11840 bifunctional sulfur c 77.0 18 0.00039 28.7 7.5 98 51-155 173-281 (326)
250 TIGR02886 spore_II_AA anti-sig 76.7 9.7 0.00021 24.3 5.2 37 61-100 60-96 (106)
251 COG5190 FCP1 TFIIF-interacting 76.4 8.8 0.00019 31.2 5.8 120 15-138 211-334 (390)
252 TIGR02826 RNR_activ_nrdG3 anae 76.2 4.6 0.0001 28.1 3.7 37 57-93 73-109 (147)
253 PLN02951 Molybderin biosynthes 76.2 8.8 0.00019 31.0 5.8 45 53-97 115-161 (373)
254 PRK08091 ribulose-phosphate 3- 76.0 21 0.00046 26.8 7.4 110 59-168 103-224 (228)
255 PLN02499 glycerol-3-phosphate 75.2 1.7 3.6E-05 36.4 1.5 34 64-99 101-135 (498)
256 COG2044 Predicted peroxiredoxi 75.0 7 0.00015 26.3 4.1 26 56-81 59-84 (120)
257 PRK13762 tRNA-modifying enzyme 74.4 5.2 0.00011 31.6 4.0 35 54-88 140-174 (322)
258 PF01740 STAS: STAS domain; I 73.9 3.3 7.1E-05 27.1 2.4 38 61-101 69-106 (117)
259 COG0752 GlyQ Glycyl-tRNA synth 73.7 6.5 0.00014 29.8 4.1 39 112-150 94-135 (298)
260 COG0019 LysA Diaminopimelate d 73.4 20 0.00044 29.3 7.2 89 61-160 37-133 (394)
261 TIGR00377 ant_ant_sig anti-ant 73.1 13 0.00028 23.7 5.1 39 61-102 64-102 (108)
262 PF03332 PMM: Eukaryotic phosp 72.9 5.1 0.00011 29.9 3.4 30 61-91 1-30 (220)
263 TIGR01452 PGP_euk phosphoglyco 72.3 6.8 0.00015 30.1 4.2 25 58-83 145-169 (279)
264 PF02091 tRNA-synt_2e: Glycyl- 71.1 4 8.7E-05 31.2 2.5 39 112-150 88-129 (284)
265 cd07041 STAS_RsbR_RsbS_like Su 70.7 17 0.00037 23.3 5.3 35 61-98 62-96 (109)
266 PLN03190 aminophospholipid tra 70.5 7.9 0.00017 36.2 4.7 40 56-96 726-765 (1178)
267 KOG4132|consensus 69.7 46 0.00099 25.2 8.2 110 60-171 143-258 (260)
268 COG2433 Uncharacterized conser 67.1 19 0.00042 31.0 5.9 59 17-98 256-315 (652)
269 CHL00162 thiG thiamin biosynth 66.9 48 0.001 25.5 7.5 99 51-155 113-221 (267)
270 KOG4549|consensus 66.0 8.9 0.00019 26.1 3.1 47 122-168 37-83 (144)
271 cd03334 Fab1_TCP TCP-1 like do 65.2 60 0.0013 24.8 9.3 36 61-97 119-154 (261)
272 PTZ00170 D-ribulose-5-phosphat 64.8 48 0.001 24.7 7.3 93 61-154 103-203 (228)
273 KOG0206|consensus 64.0 10 0.00023 35.2 4.1 42 55-97 650-691 (1151)
274 PRK12702 mannosyl-3-phosphogly 63.8 9.5 0.00021 29.9 3.4 43 108-150 207-251 (302)
275 PF13911 AhpC-TSA_2: AhpC/TSA 63.4 37 0.0008 22.0 5.9 34 63-97 4-37 (115)
276 PF02606 LpxK: Tetraacyldisacc 63.1 30 0.00064 27.5 6.1 89 58-150 51-153 (326)
277 cd06844 STAS Sulphate Transpor 62.5 27 0.00059 22.0 5.0 35 61-98 60-94 (100)
278 PF02350 Epimerase_2: UDP-N-ac 62.0 43 0.00092 26.7 6.9 85 67-154 2-100 (346)
279 PF05690 ThiG: Thiazole biosyn 62.0 57 0.0012 24.8 7.0 99 49-153 97-205 (247)
280 TIGR00262 trpA tryptophan synt 61.4 59 0.0013 24.8 7.3 93 58-155 126-230 (256)
281 PRK13361 molybdenum cofactor b 60.6 46 0.001 26.2 6.9 44 54-97 71-116 (329)
282 smart00475 53EXOc 5'-3' exonuc 60.5 6.4 0.00014 30.1 1.9 35 114-148 160-198 (259)
283 cd05014 SIS_Kpsf KpsF-like pro 60.4 10 0.00022 25.1 2.7 26 58-83 60-85 (128)
284 cd05008 SIS_GlmS_GlmD_1 SIS (S 60.1 12 0.00025 24.7 3.0 26 58-83 59-84 (126)
285 PF06014 DUF910: Bacterial pro 60.0 2.1 4.6E-05 25.2 -0.6 25 114-142 7-31 (62)
286 PRK12656 fructose-6-phosphate 59.2 32 0.00069 25.8 5.4 110 55-168 88-214 (222)
287 TIGR02244 HAD-IG-Ncltidse HAD 58.5 6 0.00013 31.6 1.5 21 11-32 8-28 (343)
288 TIGR03679 arCOG00187 arCOG0018 58.5 73 0.0016 23.6 8.8 99 64-162 13-129 (218)
289 TIGR03365 Bsubt_queE 7-cyano-7 58.4 9.6 0.00021 28.7 2.5 29 55-83 83-111 (238)
290 PF04273 DUF442: Putative phos 58.4 50 0.0011 21.7 5.7 67 62-129 17-90 (110)
291 KOG0208|consensus 56.8 18 0.00039 33.1 4.1 43 55-98 704-746 (1140)
292 PF10307 DUF2410: Hypothetical 55.8 76 0.0016 23.4 6.7 94 59-155 57-175 (197)
293 PRK14908 glycyl-tRNA synthetas 54.8 21 0.00046 32.7 4.4 39 112-150 94-135 (1000)
294 PLN02177 glycerol-3-phosphate 54.8 90 0.002 26.4 7.9 15 16-30 22-36 (497)
295 cd04906 ACT_ThrD-I_1 First of 54.4 21 0.00044 22.1 3.2 24 60-83 54-77 (85)
296 PF04413 Glycos_transf_N: 3-De 54.4 18 0.00039 26.2 3.3 72 63-139 109-185 (186)
297 COG0809 QueA S-adenosylmethion 54.3 7.8 0.00017 30.8 1.5 98 61-166 188-298 (348)
298 cd05710 SIS_1 A subgroup of th 53.9 15 0.00033 24.2 2.7 26 58-83 60-85 (120)
299 PF00072 Response_reg: Respons 53.5 53 0.0011 20.5 8.2 94 61-164 10-111 (112)
300 PRK04302 triosephosphate isome 53.1 61 0.0013 24.0 6.1 109 56-169 98-220 (223)
301 KOG0203|consensus 52.9 9.6 0.00021 34.2 1.9 90 56-146 590-726 (1019)
302 PRK12360 4-hydroxy-3-methylbut 52.8 1.1E+02 0.0024 23.9 7.9 72 60-136 42-127 (281)
303 PRK01362 putative translaldola 52.8 46 0.001 24.7 5.3 110 56-168 85-210 (214)
304 PRK10076 pyruvate formate lyas 52.3 32 0.00069 25.5 4.4 29 55-83 49-78 (213)
305 TIGR03127 RuMP_HxlB 6-phospho 52.0 16 0.00034 25.9 2.7 26 58-83 85-110 (179)
306 KOG0541|consensus 51.6 74 0.0016 22.6 5.7 43 57-99 63-105 (171)
307 cd07043 STAS_anti-anti-sigma_f 50.9 37 0.00081 20.8 4.1 38 61-101 59-96 (99)
308 TIGR02668 moaA_archaeal probab 50.8 47 0.001 25.7 5.4 45 53-97 65-110 (302)
309 PHA02769 hypothetical protein; 50.5 2.9 6.4E-05 27.8 -1.1 70 58-131 16-85 (154)
310 PF05240 APOBEC_C: APOBEC-like 49.5 15 0.00032 21.1 1.7 22 60-81 3-24 (55)
311 KOG0391|consensus 49.4 1.4E+02 0.0029 28.8 8.3 62 61-126 1265-1327(1958)
312 PRK10026 arsenate reductase; P 49.3 38 0.00083 23.4 4.1 12 86-97 17-28 (141)
313 PRK10060 RNase II stability mo 49.0 1.2E+02 0.0026 26.5 8.1 109 59-171 541-661 (663)
314 TIGR03470 HpnH hopanoid biosyn 48.9 49 0.0011 26.0 5.3 33 51-83 79-111 (318)
315 PRK02261 methylaspartate mutas 48.9 84 0.0018 21.4 8.6 108 61-171 20-137 (137)
316 COG1117 PstB ABC-type phosphat 48.7 27 0.00057 26.4 3.4 27 60-88 187-213 (253)
317 cd06589 GH31 The enzymes of gl 48.5 24 0.00053 26.9 3.4 28 56-83 63-90 (265)
318 PRK05928 hemD uroporphyrinogen 48.3 1E+02 0.0022 22.6 6.7 39 127-167 209-247 (249)
319 TIGR00875 fsa_talC_mipB fructo 48.1 60 0.0013 24.1 5.3 108 56-169 85-211 (213)
320 KOG1014|consensus 47.9 1E+02 0.0022 24.4 6.7 58 63-122 64-123 (312)
321 cd05017 SIS_PGI_PMI_1 The memb 47.7 21 0.00046 23.4 2.7 25 58-82 56-80 (119)
322 TIGR01458 HAD-SF-IIA-hyp3 HAD- 47.6 26 0.00056 26.6 3.4 25 58-82 122-146 (257)
323 COG1519 KdtA 3-deoxy-D-manno-o 47.6 1.6E+02 0.0035 24.4 9.2 86 61-153 65-154 (419)
324 COG2896 MoaA Molybdenum cofact 47.5 41 0.00088 26.8 4.5 83 53-146 68-151 (322)
325 COG1809 (2R)-phospho-3-sulfola 47.5 92 0.002 23.5 6.0 99 69-170 16-131 (258)
326 PRK13717 conjugal transfer pro 47.0 7.6 0.00016 26.3 0.3 15 14-28 43-57 (128)
327 PF01380 SIS: SIS domain SIS d 46.9 39 0.00085 22.1 3.9 25 59-83 67-91 (131)
328 COG0352 ThiE Thiamine monophos 46.9 1.1E+02 0.0023 22.8 6.4 86 63-155 95-189 (211)
329 cd05006 SIS_GmhA Phosphoheptos 46.7 21 0.00046 25.2 2.7 26 58-83 114-139 (177)
330 PRK13307 bifunctional formalde 46.5 1.1E+02 0.0023 25.1 6.9 104 61-167 265-374 (391)
331 PF07085 DRTGG: DRTGG domain; 46.4 26 0.00057 22.4 2.9 43 124-166 39-83 (105)
332 TIGR00216 ispH_lytB (E)-4-hydr 46.2 1.4E+02 0.0031 23.3 8.0 72 60-136 40-124 (280)
333 TIGR00640 acid_CoA_mut_C methy 45.9 33 0.00072 23.3 3.4 18 63-80 44-61 (132)
334 cd06595 GH31_xylosidase_XylS-l 45.9 27 0.0006 27.1 3.4 26 56-81 71-96 (292)
335 cd05013 SIS_RpiR RpiR-like pro 45.8 22 0.00047 23.4 2.5 25 59-83 74-98 (139)
336 PRK09722 allulose-6-phosphate 45.6 1.3E+02 0.0028 22.7 6.8 93 60-152 96-197 (229)
337 cd04795 SIS SIS domain. SIS (S 45.4 22 0.00048 21.4 2.3 22 58-79 60-81 (87)
338 PF00578 AhpC-TSA: AhpC/TSA fa 45.3 39 0.00084 21.8 3.7 39 58-97 45-83 (124)
339 COG1366 SpoIIAA Anti-anti-sigm 44.7 50 0.0011 21.6 4.1 36 62-100 66-101 (117)
340 PF13604 AAA_30: AAA domain; P 44.6 1.2E+02 0.0026 21.9 7.1 74 61-136 35-132 (196)
341 smart00540 LEM in nuclear memb 44.5 22 0.00047 19.4 1.9 30 62-92 9-38 (44)
342 PRK11145 pflA pyruvate formate 44.5 50 0.0011 24.7 4.5 38 56-93 82-123 (246)
343 cd03036 ArsC_like Arsenate Red 44.4 47 0.001 21.6 3.9 51 76-128 4-55 (111)
344 PRK12446 undecaprenyldiphospho 43.9 92 0.002 24.8 6.2 111 54-169 12-138 (352)
345 KOG1513|consensus 43.6 89 0.0019 28.5 6.2 105 59-169 433-543 (1300)
346 TIGR00815 sulP high affinity s 43.5 68 0.0015 27.4 5.6 39 61-102 515-553 (563)
347 PF12261 T_hemolysin: Thermost 43.3 50 0.0011 23.9 4.1 33 64-99 108-140 (179)
348 PF00532 Peripla_BP_1: Peripla 43.3 1.5E+02 0.0032 22.6 7.7 65 64-134 23-88 (279)
349 PLN03017 trehalose-phosphatase 43.0 95 0.002 25.2 6.0 44 109-152 283-333 (366)
350 cd05005 SIS_PHI Hexulose-6-pho 42.9 26 0.00056 24.8 2.6 26 58-83 88-113 (179)
351 PRK13937 phosphoheptose isomer 42.7 26 0.00056 25.2 2.6 26 58-83 119-144 (188)
352 cd04256 AAK_P5CS_ProBA AAK_P5C 42.6 1E+02 0.0022 23.9 6.1 73 59-133 34-128 (284)
353 KOG2469|consensus 42.5 13 0.00028 30.4 1.0 18 15-32 26-43 (424)
354 PRK15108 biotin synthase; Prov 42.5 18 0.00039 28.9 1.9 42 58-100 110-151 (345)
355 TIGR00441 gmhA phosphoheptose 42.4 27 0.00059 24.2 2.6 26 58-83 92-117 (154)
356 TIGR03278 methan_mark_10 putat 41.9 64 0.0014 26.5 5.0 47 51-98 81-131 (404)
357 KOG1618|consensus 41.9 28 0.00061 27.7 2.8 31 124-154 296-342 (389)
358 cd06591 GH31_xylosidase_XylS X 41.8 35 0.00076 26.9 3.4 25 56-80 63-87 (319)
359 PF02593 dTMP_synthase: Thymid 41.6 1.5E+02 0.0032 22.2 6.7 89 55-145 58-154 (217)
360 cd06599 GH31_glycosidase_Aec37 41.4 36 0.00078 26.8 3.4 25 56-80 70-94 (317)
361 COG2897 SseA Rhodanese-related 41.3 52 0.0011 25.7 4.2 46 108-153 72-123 (285)
362 PRK01045 ispH 4-hydroxy-3-meth 41.3 1.8E+02 0.0038 23.0 8.2 71 60-136 41-124 (298)
363 cd01994 Alpha_ANH_like_IV This 41.2 1.4E+02 0.003 21.7 8.2 96 64-160 15-129 (194)
364 cd04726 KGPDC_HPS 3-Keto-L-gul 40.9 1.2E+02 0.0026 21.6 6.0 90 61-155 92-189 (202)
365 cd06594 GH31_glucosidase_YihQ 40.8 36 0.00077 26.8 3.3 26 56-81 68-93 (317)
366 PF01976 DUF116: Protein of un 40.8 59 0.0013 22.9 4.1 35 60-97 74-108 (158)
367 PF10113 Fibrillarin_2: Fibril 40.7 40 0.00087 27.9 3.5 43 112-154 209-255 (505)
368 TIGR00113 queA S-adenosylmethi 40.4 19 0.00041 28.9 1.7 98 61-166 187-299 (344)
369 PF02784 Orn_Arg_deC_N: Pyrido 40.0 1.6E+02 0.0034 22.1 6.6 79 65-154 13-95 (251)
370 COG3727 Vsr DNA G:T-mismatch r 40.0 28 0.00061 23.9 2.2 70 3-79 45-115 (150)
371 cd06598 GH31_transferase_CtsZ 39.8 36 0.00078 26.8 3.2 25 56-80 67-91 (317)
372 cd06593 GH31_xylosidase_YicI Y 39.7 39 0.00085 26.3 3.4 25 56-80 63-87 (308)
373 PRK00147 queA S-adenosylmethio 39.5 17 0.00037 29.1 1.4 98 61-166 186-297 (342)
374 TIGR02109 PQQ_syn_pqqE coenzym 39.4 40 0.00086 26.8 3.4 43 54-97 63-107 (358)
375 PF06901 FrpC: RTX iron-regula 39.2 18 0.00039 26.5 1.3 18 11-28 53-70 (271)
376 cd06597 GH31_transferase_CtsY 39.2 40 0.00087 26.9 3.4 25 56-80 82-106 (340)
377 cd06831 PLPDE_III_ODC_like_AZI 39.1 2.1E+02 0.0045 23.4 7.5 82 61-153 23-110 (394)
378 TIGR00423 radical SAM domain p 39.0 41 0.00088 26.3 3.4 41 21-76 260-300 (309)
379 PF05761 5_nucleotid: 5' nucle 39.0 19 0.0004 30.0 1.5 20 10-30 7-26 (448)
380 cd06592 GH31_glucosidase_KIAA1 38.8 41 0.00089 26.2 3.4 26 56-81 67-92 (303)
381 PRK12311 rpsB 30S ribosomal pr 38.7 59 0.0013 25.9 4.2 30 124-153 152-183 (326)
382 PRK05301 pyrroloquinoline quin 38.5 37 0.00081 27.2 3.2 45 52-97 70-116 (378)
383 PF13541 ChlI: Subunit ChlI of 38.0 65 0.0014 21.6 3.8 28 53-80 92-119 (121)
384 TIGR02370 pyl_corrinoid methyl 37.9 1.6E+02 0.0034 21.4 6.7 90 60-150 100-191 (197)
385 PRK14057 epimerase; Provisiona 37.8 1.9E+02 0.004 22.3 7.3 109 59-168 110-238 (254)
386 PRK01424 S-adenosylmethionine: 37.8 24 0.00052 28.4 1.9 97 61-165 208-317 (366)
387 TIGR02765 crypto_DASH cryptoch 37.6 37 0.0008 27.8 3.1 39 59-98 61-99 (429)
388 TIGR03677 rpl7ae 50S ribosomal 37.5 1.2E+02 0.0027 20.1 8.7 52 112-166 59-112 (117)
389 cd06603 GH31_GANC_GANAB_alpha 37.4 44 0.00096 26.5 3.4 25 56-80 61-85 (339)
390 KOG0832|consensus 37.0 23 0.0005 26.7 1.6 86 62-153 98-204 (251)
391 PRK00414 gmhA phosphoheptose i 36.9 38 0.00082 24.5 2.7 26 58-83 124-149 (192)
392 PRK05752 uroporphyrinogen-III 36.8 1.4E+02 0.0031 22.4 6.0 21 58-78 12-32 (255)
393 PRK10834 vancomycin high tempe 36.7 1.9E+02 0.0041 22.0 7.6 88 63-152 72-168 (239)
394 PF04007 DUF354: Protein of un 36.5 2.2E+02 0.0048 22.7 7.2 88 61-153 16-111 (335)
395 COG2099 CobK Precorrin-6x redu 36.4 2E+02 0.0043 22.2 8.9 95 52-154 108-231 (257)
396 PF01990 ATP-synt_F: ATP synth 36.2 41 0.0009 21.2 2.6 38 128-168 1-38 (95)
397 cd03018 PRX_AhpE_like Peroxire 36.1 81 0.0018 21.1 4.2 59 58-124 48-106 (149)
398 COG1180 PflA Pyruvate-formate 36.1 44 0.00096 25.5 3.1 34 51-84 91-124 (260)
399 cd06578 HemD Uroporphyrinogen- 35.9 1.7E+02 0.0036 21.1 6.6 39 126-166 79-117 (239)
400 PRK01395 V-type ATP synthase s 35.5 53 0.0012 21.4 3.0 27 127-154 5-31 (104)
401 COG0821 gcpE 1-hydroxy-2-methy 35.5 30 0.00064 27.7 2.1 93 63-160 40-139 (361)
402 PF03852 Vsr: DNA mismatch end 35.3 32 0.0007 21.1 1.8 27 3-31 44-70 (75)
403 PRK13938 phosphoheptose isomer 35.2 39 0.00083 24.7 2.5 26 58-83 126-151 (196)
404 PRK14976 5'-3' exonuclease; Pr 35.2 96 0.0021 24.1 4.8 36 114-149 165-204 (281)
405 COG0078 ArgF Ornithine carbamo 35.1 2.3E+02 0.005 22.5 9.7 108 58-168 86-202 (310)
406 PF00875 DNA_photolyase: DNA p 34.8 92 0.002 21.6 4.4 43 58-101 52-94 (165)
407 PF03033 Glyco_transf_28: Glyc 34.8 84 0.0018 20.7 4.1 33 61-97 15-47 (139)
408 PF04131 NanE: Putative N-acet 34.6 1.3E+02 0.0029 22.0 5.1 88 59-158 79-179 (192)
409 cd00956 Transaldolase_FSA Tran 34.1 1.9E+02 0.0042 21.3 7.5 96 55-153 84-186 (211)
410 PRK13125 trpA tryptophan synth 34.1 2E+02 0.0042 21.6 6.3 95 59-154 116-216 (244)
411 cd03789 GT1_LPS_heptosyltransf 34.0 1.7E+02 0.0036 22.1 6.1 36 58-93 139-174 (279)
412 PF13686 DrsE_2: DsrE/DsrF/Drs 34.0 52 0.0011 22.9 2.9 24 58-81 90-113 (148)
413 TIGR02666 moaA molybdenum cofa 33.9 1.2E+02 0.0026 23.8 5.4 44 54-97 69-114 (334)
414 PRK08185 hypothetical protein; 33.9 1.8E+02 0.0039 22.7 6.1 102 62-166 2-113 (283)
415 TIGR01290 nifB nitrogenase cof 33.7 1.5E+02 0.0031 24.8 5.9 38 59-97 95-135 (442)
416 COG1393 ArsC Arsenate reductas 33.7 99 0.0021 20.6 4.1 35 61-95 14-51 (117)
417 PRK10886 DnaA initiator-associ 33.6 43 0.00092 24.5 2.6 26 58-83 122-147 (196)
418 PRK13936 phosphoheptose isomer 33.5 45 0.00097 24.2 2.7 26 58-83 124-149 (197)
419 cd08584 PI-PLCc_GDPD_SF_unchar 33.3 50 0.0011 24.2 2.8 20 61-80 138-157 (192)
420 PLN02151 trehalose-phosphatase 33.0 1.1E+02 0.0024 24.7 5.0 35 109-143 269-306 (354)
421 PF02579 Nitro_FeMo-Co: Dinitr 32.9 1E+02 0.0022 18.8 4.0 35 63-99 44-78 (94)
422 PRK13344 spxA transcriptional 32.8 1E+02 0.0022 20.9 4.2 37 59-95 11-50 (132)
423 PRK05755 DNA polymerase I; Pro 32.7 20 0.00044 32.4 0.9 84 60-149 109-200 (880)
424 cd01773 Faf1_like1_UBX Faf1 ik 32.5 44 0.00096 20.8 2.1 21 114-134 61-81 (82)
425 PRK10949 protease 4; Provision 32.5 96 0.0021 27.1 4.8 70 59-136 132-210 (618)
426 PRK08444 hypothetical protein; 32.5 49 0.0011 26.6 2.9 40 22-76 302-341 (353)
427 COG4245 TerY Uncharacterized p 32.2 1.7E+02 0.0036 21.6 5.3 50 12-83 1-55 (207)
428 cd06600 GH31_MGAM-like This fa 32.1 58 0.0013 25.6 3.3 25 56-80 61-85 (317)
429 COG0378 HypB Ni2+-binding GTPa 31.9 2.1E+02 0.0046 21.1 7.7 71 61-135 30-106 (202)
430 cd03034 ArsC_ArsC Arsenate Red 31.6 1E+02 0.0022 20.1 3.9 37 59-95 10-49 (112)
431 PRK02947 hypothetical protein; 31.6 48 0.001 25.0 2.7 25 58-82 119-143 (246)
432 KOG1050|consensus 31.6 89 0.0019 27.9 4.5 46 16-88 503-549 (732)
433 PF02401 LYTB: LytB protein; 31.4 2.5E+02 0.0054 21.9 6.6 27 110-136 96-122 (281)
434 COG1433 Uncharacterized conser 31.1 1E+02 0.0022 20.7 3.9 37 60-98 53-89 (121)
435 COG1225 Bcp Peroxiredoxin [Pos 31.0 1.9E+02 0.0042 20.4 9.6 93 60-168 52-156 (157)
436 cd04861 LigD_Pol_like LigD_Pol 30.8 35 0.00076 25.7 1.7 10 15-24 97-106 (227)
437 COG2241 CobL Precorrin-6B meth 30.8 2.3E+02 0.0049 21.1 9.5 91 72-166 68-162 (210)
438 KOG0208|consensus 30.7 1.5E+02 0.0032 27.6 5.6 83 60-146 651-744 (1140)
439 cd06602 GH31_MGAM_SI_GAA This 30.5 55 0.0012 26.0 2.9 26 56-81 61-88 (339)
440 cd04863 MtLigD_Pol_like MtLigD 30.4 37 0.00081 25.6 1.8 12 14-25 100-111 (231)
441 COG1212 KdsB CMP-2-keto-3-deox 30.1 2.3E+02 0.0051 21.5 5.9 39 59-97 50-90 (247)
442 COG0859 RfaF ADP-heptose:LPS h 30.1 2.1E+02 0.0046 22.5 6.2 37 59-95 195-231 (334)
443 PRK12653 fructose-6-phosphate 30.1 1.4E+02 0.003 22.3 4.8 111 56-169 87-213 (220)
444 TIGR02744 TrbI_Ftype type-F co 30.0 20 0.00043 23.8 0.3 14 15-28 31-44 (112)
445 PF10644 Misat_Tub_SegII: Misa 29.9 40 0.00087 22.3 1.8 17 12-28 54-70 (115)
446 TIGR03556 photolyase_8HDF deox 29.8 71 0.0015 26.7 3.6 40 58-98 54-93 (471)
447 PRK12655 fructose-6-phosphate 29.7 1.2E+02 0.0026 22.7 4.4 111 56-169 87-213 (220)
448 TIGR00365 monothiol glutaredox 29.6 1.5E+02 0.0033 18.7 7.2 68 63-135 3-77 (97)
449 PLN02591 tryptophan synthase 29.5 2.6E+02 0.0056 21.4 7.4 94 58-154 117-220 (250)
450 COG4483 Uncharacterized protei 29.4 24 0.00052 21.0 0.5 25 114-142 7-31 (68)
451 COG4565 CitB Response regulato 29.4 2.5E+02 0.0054 21.1 8.6 102 61-170 12-120 (224)
452 PRK11557 putative DNA-binding 29.3 48 0.001 25.2 2.4 26 58-83 188-213 (278)
453 PF12965 DUF3854: Domain of un 29.3 48 0.001 22.5 2.1 23 59-81 89-111 (130)
454 PRK11337 DNA-binding transcrip 29.2 57 0.0012 25.1 2.8 26 58-83 200-225 (292)
455 PF13200 DUF4015: Putative gly 29.1 85 0.0018 24.9 3.7 18 58-75 60-77 (316)
456 COG3453 Uncharacterized protei 29.1 1.2E+02 0.0026 20.6 3.8 60 63-122 19-87 (130)
457 COG0602 NrdG Organic radical a 29.1 74 0.0016 23.6 3.2 28 57-84 84-111 (212)
458 KOG3111|consensus 29.0 2.4E+02 0.0053 20.9 9.6 111 55-166 95-215 (224)
459 PRK12314 gamma-glutamyl kinase 28.6 46 0.001 25.5 2.1 77 58-135 33-113 (266)
460 PF14106 DUF4279: Domain of un 28.6 1.7E+02 0.0036 18.9 5.4 37 115-151 9-45 (118)
461 PRK13695 putative NTPase; Prov 28.5 2.1E+02 0.0045 19.9 5.6 60 59-121 113-172 (174)
462 KOG3938|consensus 27.9 70 0.0015 24.8 2.9 22 111-132 76-97 (334)
463 cd06601 GH31_lyase_GLase GLase 27.8 80 0.0017 25.2 3.4 28 56-83 61-88 (332)
464 cd05007 SIS_Etherase N-acetylm 27.8 73 0.0016 24.3 3.1 26 58-83 131-156 (257)
465 PRK11359 cyclic-di-GMP phospho 27.8 4.2E+02 0.0092 23.3 8.6 108 57-168 676-795 (799)
466 PRK01713 ornithine carbamoyltr 27.7 3.2E+02 0.0069 21.8 8.5 97 56-155 86-192 (334)
467 PLN00094 aconitate hydratase 2 27.7 90 0.0019 28.5 3.9 73 10-91 229-315 (938)
468 PRK10892 D-arabinose 5-phospha 27.6 56 0.0012 25.6 2.5 26 58-83 107-132 (326)
469 cd01971 Nitrogenase_VnfN_like 27.5 2E+02 0.0043 23.7 5.7 44 110-153 174-217 (427)
470 cd04865 LigD_Pol_like_2 LigD_P 27.4 43 0.00094 25.2 1.7 11 15-25 98-108 (228)
471 TIGR02494 PFLE_PFLC glycyl-rad 27.3 83 0.0018 24.2 3.4 30 54-83 135-165 (295)
472 PRK15482 transcriptional regul 27.3 66 0.0014 24.7 2.8 26 58-83 195-220 (285)
473 cd03017 PRX_BCP Peroxiredoxin 27.2 1.5E+02 0.0031 19.5 4.3 57 59-125 44-100 (140)
474 cd04862 PaeLigD_Pol_like PaeLi 27.1 45 0.00098 25.1 1.8 11 15-25 97-107 (227)
475 TIGR02493 PFLA pyruvate format 27.0 59 0.0013 24.0 2.5 41 53-93 74-118 (235)
476 PF02142 MGS: MGS-like domain 26.9 1.3E+02 0.0028 18.8 3.7 32 60-97 1-32 (95)
477 cd06604 GH31_glucosidase_II_Ma 26.9 77 0.0017 25.1 3.2 25 56-80 61-85 (339)
478 PF00834 Ribul_P_3_epim: Ribul 26.9 1.6E+02 0.0036 21.5 4.7 89 57-152 90-194 (201)
479 TIGR00393 kpsF KpsF/GutQ famil 26.6 63 0.0014 24.3 2.6 26 58-83 60-85 (268)
480 PRK11382 frlB fructoselysine-6 26.6 68 0.0015 25.5 2.8 26 58-83 105-130 (340)
481 PF09269 DUF1967: Domain of un 26.5 67 0.0015 19.1 2.2 22 114-135 45-66 (69)
482 TIGR02803 ExbD_1 TonB system t 26.4 55 0.0012 21.7 2.0 27 54-80 94-121 (122)
483 TIGR01858 tag_bisphos_ald clas 26.3 3.2E+02 0.0068 21.3 7.2 97 60-159 3-110 (282)
484 PF14597 Lactamase_B_5: Metall 26.3 41 0.00088 24.6 1.3 43 55-97 37-80 (199)
485 PRK11543 gutQ D-arabinose 5-ph 26.2 72 0.0016 24.8 2.9 26 58-83 102-127 (321)
486 PRK12559 transcriptional regul 26.1 1.7E+02 0.0036 19.8 4.3 38 58-95 10-50 (131)
487 TIGR00014 arsC arsenate reduct 26.0 1.6E+02 0.0035 19.2 4.1 40 58-97 9-51 (114)
488 PRK13663 hypothetical protein; 26.0 1.3E+02 0.0029 25.0 4.3 47 54-100 87-138 (493)
489 KOG1154|consensus 25.9 3.1E+02 0.0067 21.1 6.0 76 61-137 37-127 (285)
490 cd01516 FBPase_glpX Bacterial 25.8 2.9E+02 0.0062 21.9 5.9 79 58-136 163-261 (309)
491 PF08013 Tagatose_6_P_K: Tagat 25.6 1.3E+02 0.0028 24.9 4.2 74 61-136 4-93 (424)
492 cd04864 LigD_Pol_like_1 LigD_P 25.4 50 0.0011 24.9 1.8 11 15-25 99-109 (228)
493 COG4018 Uncharacterized protei 25.4 84 0.0018 25.3 3.0 42 112-153 209-254 (505)
494 COG2242 CobL Precorrin-6B meth 25.3 2.4E+02 0.0053 20.6 5.2 70 100-170 9-84 (187)
495 PF13580 SIS_2: SIS domain; PD 25.3 49 0.0011 22.4 1.6 23 58-80 116-138 (138)
496 TIGR03700 mena_SCO4494 putativ 25.2 98 0.0021 24.7 3.5 40 22-76 303-342 (351)
497 PF02635 DrsE: DsrE/DsrF-like 25.2 82 0.0018 20.1 2.7 24 58-81 60-84 (122)
498 PF03603 DNA_III_psi: DNA poly 25.2 1.3E+02 0.0027 20.5 3.5 66 65-134 6-74 (128)
499 COG1763 MobB Molybdopterin-gua 25.1 89 0.0019 22.1 2.9 23 61-83 19-41 (161)
500 PRK12388 fructose-1,6-bisphosp 25.1 3.6E+02 0.0077 21.5 6.5 79 58-136 163-273 (321)
No 1
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=100.00 E-value=1.4e-35 Score=210.01 Aligned_cols=156 Identities=48% Similarity=0.796 Sum_probs=124.5
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecC-c-eeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIG-D-KVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
.||+||||||.|||++|++.++.+||++.. . .+.|+.+..+.+||++.++|+.|+++|++++++|.++.|+.+++.|+
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 589999999999999999999999999998 5 89999999999999999999999999999999998888899999999
Q ss_pred hcCcc----------cccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCcHHHHHH
Q psy4436 93 LFNWN----------QHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHK 162 (171)
Q Consensus 93 ~~~l~----------~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~ 162 (171)
.+++. .+|++.++++..|..+|+.+.++.|+++++++||||..+|+...+++|+.+++|++|.+.+.+++
T Consensus 82 ~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~ 161 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFER 161 (169)
T ss_dssp HTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHH
T ss_pred hcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHH
Confidence 99999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy4436 163 GLKQWASK 170 (171)
Q Consensus 163 ~~~~~~~~ 170 (171)
+|++|+++
T Consensus 162 gL~~~~~k 169 (169)
T PF12689_consen 162 GLEKFRKK 169 (169)
T ss_dssp HHHHHHH-
T ss_pred HHHHHhhC
Confidence 99999875
No 2
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.97 E-value=9.4e-30 Score=181.82 Aligned_cols=154 Identities=27% Similarity=0.445 Sum_probs=132.2
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecC---ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCC-chhHHHHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIG---DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRT-TEMLRAHQL 90 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~-~~~~~~~~~ 90 (171)
+||++|||+|+|||+++.++....|+.... ..+.+..+....++||+.++|+.|+++|++++++||+ .. ..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~-~~~~~~ 79 (174)
T TIGR01685 1 LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVP-EWAYEI 79 (174)
T ss_pred CCcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCCh-HHHHHH
Confidence 489999999999999999998888888665 5688888899999999999999999999999999998 55 777889
Q ss_pred HHhcCcc---------cccceeeEe---cCCc--HHHHHHHHHHh--CCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 91 VDLFNWN---------QHFDHKEIF---PGQK--TTHFANLKKAT--GIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 91 l~~~~l~---------~~fd~~~~~---~~~k--~~~~~~~~~~~--~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
++.+++. .+|+.+... .+++ +..++.+.+.+ +++|++|+||||+..|+.+|+++|+.++++++|
T Consensus 80 L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSG 159 (174)
T ss_pred HHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCC
Confidence 9999998 899876332 1223 34445554555 799999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhh
Q psy4436 155 MSHSVLHKGLKQWAS 169 (171)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (171)
....++.+.+++|..
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (174)
T TIGR01685 160 MDKGTFKKILEMWRS 174 (174)
T ss_pred ccHHHHHHHHHHhcC
Confidence 999999999999963
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.92 E-value=1e-25 Score=170.49 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=95.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++++++..+|+.+.. .+||+|+.|.+++++++++|+++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~-~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPR-ENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCH-HHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 467899999999999999999999999988 788889999999999987622 34899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCcHHHH
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMSHSVL 160 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~ 160 (171)
+||||+..|+.+|+++|+.++++.+|...+.+
T Consensus 185 l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l 216 (248)
T PLN02770 185 FVFEDSVSGIKAGVAAGMPVVGLTTRNPESLL 216 (248)
T ss_pred EEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHH
Confidence 99999999999999999999999887654433
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=6.6e-25 Score=164.23 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=92.5
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
..+++||+.++|+.|+++|++++|+||++. ......++++++..+|+.+.. ..||+|+.|.++++++|++|+++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPE-YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 468899999999999999999999999987 777778999999999987622 34899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+||||+..|+.+|+++|+.++++.+|..
T Consensus 172 l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 199 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPSVAALWGYR 199 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcEEEEeecCC
Confidence 9999999999999999999999988763
No 5
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.91 E-value=1.1e-24 Score=162.27 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=92.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||+.. ......++.+++..+|+.+.. .+||+++.|+.+++++|++|++|
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPL-HMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcH-HHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 467899999999999999999999999977 777789999999999987732 35899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
++|||+..|+.+|+++|+.++++.++..
T Consensus 169 ~~igDs~~Di~aA~~aG~~~i~v~~~~~ 196 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRSIVVPAPEQ 196 (222)
T ss_pred EEEcCChhhHHHHHHcCCEEEEecCCcc
Confidence 9999999999999999999999987653
No 6
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.91 E-value=9.7e-25 Score=161.60 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=93.6
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....++||+.++|+.|+++|++++|+||+.. ..+...++.+++..+|+.+.. ..||+|+.|++++++++++|++
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~-~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMR-DTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 3467899999999999999999999999987 777889999999999988733 2489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
++||||+..|+.+|+++|+.++++.+|..
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~~i~v~~g~~ 186 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTKTAGVAWTIK 186 (214)
T ss_pred EEEECCCHHHHHHHHHCCCeEEEEcCCCC
Confidence 99999999999999999999999998864
No 7
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.91 E-value=5.4e-24 Score=146.42 Aligned_cols=120 Identities=21% Similarity=0.172 Sum_probs=97.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc--------hhHHHH
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT--------EMLRAH 88 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~--------~~~~~~ 88 (171)
|+++||+||||++.-.. ........++|++.++|+.|+++|++++++||++ . ....
T Consensus 1 k~~~~D~dgtL~~~~~~---------------~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~-~~~~ 64 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY---------------VDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSS-GRVA 64 (132)
T ss_pred CEEEEeCCCceecCCCC---------------CCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHH-HHHH
Confidence 68999999999963111 1111245789999999999999999999999997 5 5667
Q ss_pred HHHHhcCccccccee-eEecCCcHHHHHHHHHHh-CCCCCcEEEEcC-CcccccccccCCceEEEeC
Q psy4436 89 QLVDLFNWNQHFDHK-EIFPGQKTTHFANLKKAT-GIEYKDMVFFDD-EERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 89 ~~l~~~~l~~~fd~~-~~~~~~k~~~~~~~~~~~-~~~~~~~l~vgD-~~~di~~a~~~G~~~i~v~ 152 (171)
..++.+++..+|... ....||++++|+++++++ +++|++++|||| +..|+.+|+++|+.+++++
T Consensus 65 ~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 65 RRLEELGVPIDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred HHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 789999987433322 124599999999999999 599999999999 6899999999999999985
No 8
>PRK06769 hypothetical protein; Validated
Probab=99.91 E-value=6.1e-24 Score=152.61 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=100.8
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh-------HHHH
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM-------LRAH 88 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~-------~~~~ 88 (171)
+|+|+||.||||..+-... ....+.++||+.++|+.|+++|++++|+||++.. ....
T Consensus 4 ~~~~~~d~d~~~~~~~~~~----------------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~ 67 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTTIH----------------YPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFV 67 (173)
T ss_pred CcEEEEeCCCcccCCCCCC----------------CHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHH
Confidence 7999999999995321110 1136788999999999999999999999998631 0123
Q ss_pred HHHHhcCcccccceee------EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 89 QLVDLFNWNQHFDHKE------IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 89 ~~l~~~~l~~~fd~~~------~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
..++.+++..+|.... ...||+|++|++++++++++|++|+||||+..|+.+|+++|+.++++.+|..
T Consensus 68 ~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~ 141 (173)
T PRK06769 68 QELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAG 141 (173)
T ss_pred HHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCC
Confidence 3477788877664432 2459999999999999999999999999999999999999999999988764
No 9
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.90 E-value=7.8e-24 Score=148.31 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=99.7
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch-------------
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE------------- 83 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~------------- 83 (171)
++++||+||||++..+... .......+++||+.++|+.|+++|++++|+||++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~~-------------~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDY-------------PRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCCccc-------------CCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 4799999999988665321 11223568899999999999999999999999862
Q ss_pred -hHHHHHHHHhcCccc---cccee-----eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 84 -MLRAHQLVDLFNWNQ---HFDHK-----EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 84 -~~~~~~~l~~~~l~~---~fd~~-----~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
.......++++++.. ++... ....||++++|+.+++++++++++++||||+..|+.+|+++|+.++++.+|
T Consensus 68 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 68 PNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 034555788888862 22211 123589999999999999999999999999999999999999999999765
No 10
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.90 E-value=2.8e-24 Score=159.62 Aligned_cols=101 Identities=15% Similarity=0.260 Sum_probs=91.4
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
..++||+.++|+.|+++|++++++||++. ......++++++..+|+.+.. ..||+|+.|+.++++++++|++++
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLP-VKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 57899999999999999999999999977 667779999999999987622 348999999999999999999999
Q ss_pred EEcCCc-ccccccccCCceEEEeCCCCc
Q psy4436 130 FFDDEE-RNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 130 ~vgD~~-~di~~a~~~G~~~i~v~~g~~ 156 (171)
||||+. .|+.+|+++|+.++++.++..
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 999998 799999999999999987654
No 11
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.90 E-value=3.1e-24 Score=160.12 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=89.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee---E--ecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE---I--FPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~---~--~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....++||+.++|+.|+++|++++|+||++. ......++.+++..+|+.+. . .+||+|+.|.+++++++++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~-~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHP-HNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCH-HHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 3467899999999999999999999999877 67777899999999998762 1 3489999999999999999999
Q ss_pred EEEEcCCcccccccccCCce-EEEeCCCC
Q psy4436 128 MVFFDDEERNSHDVSPLGVT-CIHVKDGM 155 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~-~i~v~~g~ 155 (171)
|+||||+..|+.+|+++|+. ++.+.++.
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 99999999999999999997 46676544
No 12
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.90 E-value=2e-24 Score=158.07 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=90.9
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++++||++. ......++.+|+..+|+.+. ...||++++|+.++++++++|+++
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~-~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSP-AMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 467899999999999999999999999988 77788999999999998772 235899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCC
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
++|||+..|+.+|+++|+.++++..+
T Consensus 169 ~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 169 LFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred EEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 99999999999999999999999653
No 13
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.90 E-value=4.3e-24 Score=158.95 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=93.9
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
..++||+.++|..|+.+|++++|+||++. ..+...++++|+..+|+.+.+ .+||+|..+..++++++++|++++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~-~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPE-RELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcH-HHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 57899999999999999999999999988 888889999999999988744 348899999999999999988999
Q ss_pred EEcCCcccccccccCCceEEEeCCCCc
Q psy4436 130 FFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 130 ~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
||||+..|+.+|+++|+.++.+.+|+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~ 193 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYN 193 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999999999999999999874
No 14
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.90 E-value=5.3e-24 Score=161.91 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=90.6
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++++++..+|+.+.. .+||+|++|..++++++++|++|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~-~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPR-RYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCH-HHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 457899999999999999999999999987 777889999999999988722 35999999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCC
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~ 153 (171)
+||||+..|+.+|+++|+.++++.+
T Consensus 186 l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 186 IVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEEec
Confidence 9999999999999999999999963
No 15
>PRK11587 putative phosphatase; Provisional
Probab=99.90 E-value=1.5e-23 Score=155.80 Aligned_cols=102 Identities=12% Similarity=-0.025 Sum_probs=88.1
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....++||+.++|+.|+++|++++|+||++. ......++..++. +|+.+. ..+||+|+.|..+++++|++|++
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~-~~~~~~l~~~~l~-~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSV-PVASARHKAAGLP-APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCc-hHHHHHHHhcCCC-CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 4568899999999999999999999999987 5566678888874 455441 13489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
|+||||+..|+.+|+++|+.++++.++..
T Consensus 158 ~l~igDs~~di~aA~~aG~~~i~v~~~~~ 186 (218)
T PRK11587 158 CVVVEDAPAGVLSGLAAGCHVIAVNAPAD 186 (218)
T ss_pred EEEEecchhhhHHHHHCCCEEEEECCCCc
Confidence 99999999999999999999999987654
No 16
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.89 E-value=1.4e-23 Score=159.11 Aligned_cols=102 Identities=9% Similarity=-0.037 Sum_probs=91.5
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc-ceeeE-----ecCCcHHHHHHHHHHhCCC-CC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF-DHKEI-----FPGQKTTHFANLKKATGIE-YK 126 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f-d~~~~-----~~~~k~~~~~~~~~~~~~~-~~ 126 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++.+++..+| +.+.. ..||+|++|.++++++++. |+
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~-~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 175 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTR-EMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVA 175 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcH-HHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCch
Confidence 457899999999999999999999999988 7788899999999886 66511 3489999999999999995 99
Q ss_pred cEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+++||||+..|+.+|+++|+.+++|.+|..
T Consensus 176 ~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 176 ACVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred heEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 999999999999999999999999998864
No 17
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.89 E-value=6.8e-24 Score=156.64 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=92.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++++++..+|+.+.. ..||+|+.|.+++++++++|+++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 161 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPT-PLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQM 161 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHe
Confidence 467899999999999999999999999977 778889999999999987632 24899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+||||+..|+.+|+++|+.++++.+|..
T Consensus 162 ~~igDs~~d~~aa~~aG~~~i~v~~g~~ 189 (213)
T TIGR01449 162 VYVGDSRVDIQAARAAGCPSVLLTYGYR 189 (213)
T ss_pred EEeCCCHHHHHHHHHCCCeEEEEccCCC
Confidence 9999999999999999999999988764
No 18
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.89 E-value=8.8e-24 Score=155.48 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....++||+.++|+.|+++|++++|+||++. ..+...++.+++..+|+.+.. .+||+++.|+.++++++++|++
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSG-PRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 3578899999999999999999999999987 667778999999999987622 3589999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
++||||+..|+.+|+++|+.++.+.||..
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~i~~~~g~~ 179 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTATVAALWGEG 179 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeEEEEEecCC
Confidence 99999999999999999999999998874
No 19
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.89 E-value=1.6e-22 Score=146.18 Aligned_cols=127 Identities=14% Similarity=0.010 Sum_probs=99.3
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch-----------
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE----------- 83 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~----------- 83 (171)
|.|+++||+||||.-.. . .+........++||+.++|+.|+++|++++|+||++.
T Consensus 2 ~~~~~~~d~~~t~~~~~-~-------------~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~ 67 (181)
T PRK08942 2 SMKAIFLDRDGVINVDS-D-------------GYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQL 67 (181)
T ss_pred CccEEEEECCCCcccCC-c-------------cccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHH
Confidence 67999999999985321 1 1122334678999999999999999999999999862
Q ss_pred ---hHHHHHHHHhcCcccccceee----------EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEE
Q psy4436 84 ---MLRAHQLVDLFNWNQHFDHKE----------IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 84 ---~~~~~~~l~~~~l~~~fd~~~----------~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~ 150 (171)
.+.....++++++. |+.+. ...||+|++|.+++++++++|++++||||+..|+.+|+++|+.+++
T Consensus 68 ~~~~~~~~~~l~~~g~~--f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~ 145 (181)
T PRK08942 68 NALHEKMDWSLADRGGR--LDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVL 145 (181)
T ss_pred HHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEE
Confidence 02233355666652 43321 2359999999999999999999999999999999999999999999
Q ss_pred eCCCCcH
Q psy4436 151 VKDGMSH 157 (171)
Q Consensus 151 v~~g~~~ 157 (171)
+.+|...
T Consensus 146 v~~g~~~ 152 (181)
T PRK08942 146 VRTGKGV 152 (181)
T ss_pred EcCCCCc
Confidence 9887643
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.89 E-value=3.3e-23 Score=158.55 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=92.6
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHhCCCCCcEEE
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKATGIEYKDMVF 130 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~~~~~~~~l~ 130 (171)
...+++||+.++|+.|+++|++++|+||++. ..+...++.+++..+|+.+.... .+|++.|.+++++++++|++++|
T Consensus 139 ~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~-~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~ 217 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRSLCLGILSSNSR-QNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMY 217 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEE
Confidence 3567899999999999999999999999988 88888999999999998763221 35778899999999999999999
Q ss_pred EcCCcccccccccCCceEEEeCCCCcH
Q psy4436 131 FDDEERNSHDVSPLGVTCIHVKDGMSH 157 (171)
Q Consensus 131 vgD~~~di~~a~~~G~~~i~v~~g~~~ 157 (171)
|||+..|+.+|+++|+.++++.+|...
T Consensus 218 IGDs~~Di~aA~~AG~~~I~v~~g~~~ 244 (273)
T PRK13225 218 VGDETRDVEAARQVGLIAVAVTWGFND 244 (273)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCC
Confidence 999999999999999999999988653
No 21
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.89 E-value=2.2e-23 Score=164.60 Aligned_cols=104 Identities=9% Similarity=0.074 Sum_probs=94.0
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++++++..||+.+.. ..||+|++|.+++++++++|++|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~-~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPR-KTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 457899999999999999999999999988 888889999999999998722 24899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCcHH
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMSHS 158 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~~~ 158 (171)
++|||+..|+.+|+++|+.+|++.++....
T Consensus 293 l~IGDS~~DIeAAk~AGm~~IgV~~~~~~~ 322 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMKCVAVASKHPIY 322 (381)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEECCCCChh
Confidence 999999999999999999999998765433
No 22
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.89 E-value=1.8e-22 Score=145.34 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=95.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh------------
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM------------ 84 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~------------ 84 (171)
|+++||.||||+...-+. ......+++||+.++|+.|+++|++++|+||++..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~---------------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV---------------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCCCCC---------------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 689999999998422111 12346789999999999999999999999998731
Q ss_pred --HHHHHHHHhcCccccccee----------------eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 85 --LRAHQLVDLFNWNQHFDHK----------------EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 85 --~~~~~~l~~~~l~~~fd~~----------------~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
......+..+++. |+.+ ....||+|++|.+++++++++|++++||||+..|+.+|+++|+
T Consensus 67 ~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~ 144 (176)
T TIGR00213 67 LTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKV 144 (176)
T ss_pred HHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCC
Confidence 1222345555544 3222 1135999999999999999999999999999999999999999
Q ss_pred eE-EEeCCCCc
Q psy4436 147 TC-IHVKDGMS 156 (171)
Q Consensus 147 ~~-i~v~~g~~ 156 (171)
.+ +++.+|..
T Consensus 145 ~~~i~v~~g~~ 155 (176)
T TIGR00213 145 KTNVLVRTGKP 155 (176)
T ss_pred cEEEEEecCCc
Confidence 98 78888764
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.89 E-value=9.7e-23 Score=151.36 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=91.5
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc--cccceeeE-----ecCCcHHHHHHHHHHhCCC-C
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN--QHFDHKEI-----FPGQKTTHFANLKKATGIE-Y 125 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~--~~fd~~~~-----~~~~k~~~~~~~~~~~~~~-~ 125 (171)
...++||+.++|+.|+++|++++|+||++. ......++.+++. .+|+.+.. ..||+|+.|..++++++++ |
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~-~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 163 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDR-DTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDV 163 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence 357999999999999999999999999988 7788899999998 89987622 2389999999999999997 7
Q ss_pred CcEEEEcCCcccccccccCCceE-EEeCCCCc
Q psy4436 126 KDMVFFDDEERNSHDVSPLGVTC-IHVKDGMS 156 (171)
Q Consensus 126 ~~~l~vgD~~~di~~a~~~G~~~-i~v~~g~~ 156 (171)
++++||||+..|+.+|+++|+.+ +++.+|..
T Consensus 164 ~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~ 195 (220)
T TIGR03351 164 QSVAVAGDTPNDLEAGINAGAGAVVGVLTGAH 195 (220)
T ss_pred hHeEEeCCCHHHHHHHHHCCCCeEEEEecCCC
Confidence 99999999999999999999999 89988754
No 24
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.89 E-value=2.1e-23 Score=159.78 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=91.6
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++|+||++. ......++.+++..+|+.+.. ..||+++.|+.+++++|++|+++
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~-~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPE-RFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcH-HHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 356899999999999999999999999987 677778999999999987622 24889999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+||||+.+|+.+|+++|+.++++.+|+.
T Consensus 178 l~IGD~~~Di~aA~~aGi~~i~v~~G~~ 205 (272)
T PRK13223 178 LFVGDSRSDVLAAKAAGVQCVALSYGYN 205 (272)
T ss_pred EEECCCHHHHHHHHHCCCeEEEEecCCC
Confidence 9999999999999999999999988754
No 25
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.88 E-value=3.4e-22 Score=141.76 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=104.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc--------------
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT-------------- 82 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~-------------- 82 (171)
|+++||.||||+..-... ........++++||+.++|+.|+++|++++|+||++
T Consensus 2 ~~~~~d~dg~l~~~~~~~------------~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD------------FQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCCc------------cccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 689999999998732211 111223467899999999999999999999999973
Q ss_pred hhHHHHHHHHhcCcccccceee----------EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 83 EMLRAHQLVDLFNWNQHFDHKE----------IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 83 ~~~~~~~~l~~~~l~~~fd~~~----------~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
........++.+|+. |+.+. ...||+++++..+++++++++++++||||+..|+.+|+++|+.++++.
T Consensus 70 ~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~ 147 (161)
T TIGR01261 70 PHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYD 147 (161)
T ss_pred HHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEC
Confidence 114566688889987 54321 134899999999999999999999999999999999999999999996
Q ss_pred C-CCcHHHHHH
Q psy4436 153 D-GMSHSVLHK 162 (171)
Q Consensus 153 ~-g~~~~~~~~ 162 (171)
. ..++..+.+
T Consensus 148 ~~~~~~~~~~~ 158 (161)
T TIGR01261 148 EEELNWDMIAE 158 (161)
T ss_pred hhhcCHHHHHH
Confidence 6 467776643
No 26
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.88 E-value=3.9e-23 Score=157.91 Aligned_cols=102 Identities=13% Similarity=-0.034 Sum_probs=89.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc-ceee-----EecCCcHHHHHHHHHHhCCC-CC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF-DHKE-----IFPGQKTTHFANLKKATGIE-YK 126 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f-d~~~-----~~~~~k~~~~~~~~~~~~~~-~~ 126 (171)
...++||+.++|+.|+++|++++|+||++. ......++.+++..+| +.+. ...||+|+.|.++++++++. |+
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~-~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 177 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTR-EMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVA 177 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcH-HHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence 357899999999999999999999999988 7777788888887765 6551 13489999999999999996 69
Q ss_pred cEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+|+||||+..|+.+|+++|+.++++.+|..
T Consensus 178 e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 178 ACVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred ceEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 999999999999999999999999988764
No 27
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.88 E-value=3.5e-23 Score=154.06 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=92.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
...++.||+.++|+.|+++|++++++|+++. ......++.+++..+|+.+. ..+||.|+.|.++++++|++|++
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~-~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPR-RAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChH-HHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 4678999999999999999999999999987 77787999999999998751 13489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
|+.|+|+..++.+|+++|+.++.+..+.+
T Consensus 162 CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 162 CVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred eEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999999986443
No 28
>PLN02940 riboflavin kinase
Probab=99.88 E-value=5.1e-23 Score=164.26 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=91.1
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH-hcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD-LFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~-~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
...++||+.++|+.|+++|++++|+||++. ..+...++ ..++..+|+.+.. .+||+|+.|..++++++++|++
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~-~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPR-ANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcH-HHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 457899999999999999999999999987 66666776 7899999988722 3589999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
|++|||+..|+.+|+++|+.++++.++..
T Consensus 170 ~l~VGDs~~Di~aA~~aGi~~I~v~~g~~ 198 (382)
T PLN02940 170 CLVIEDSLPGVMAGKAAGMEVIAVPSIPK 198 (382)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEECCCCc
Confidence 99999999999999999999999988653
No 29
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.88 E-value=7.4e-23 Score=152.31 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=92.0
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++++||+.. .....+++.+++..+|+.+.. ..||+|+.|+.++++++++++++
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPT-PFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM 169 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence 467899999999999999999999999977 777779999999999987622 24889999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
++|||+.+|+.+|+++|+.++++.+|..
T Consensus 170 i~igD~~~Di~~a~~~g~~~i~v~~g~~ 197 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSVGVTYGYN 197 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEEEECcCCC
Confidence 9999999999999999999999988764
No 30
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.87 E-value=6.3e-23 Score=148.83 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=85.1
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++|+ .++|..|++. ++++|+||++. ..+...++++++..||+.+.. ..||+|+.|.+++++++++|+++
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~-~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 162 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSES-AIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC 162 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCch-HHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence 4567775 6899999876 89999999987 778889999999999988722 34899999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeC
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+||||+..|+.+|+++|+.++++.
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 163 VVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EEEeccHhhHHHHHHCCCEEEeec
Confidence 999999999999999999999985
No 31
>PRK09449 dUMP phosphatase; Provisional
Probab=99.87 E-value=1.3e-22 Score=151.08 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=86.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCC-CCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIE-YKD 127 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~-~~~ 127 (171)
...++||+.++|+.|+ +|++++|+||++. ......++.+++..+|+.+.. .+||+|++|.++++++++. +++
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~-~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFT-ELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcH-HHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 3578999999999999 6799999999977 777778999999999988722 3599999999999999985 589
Q ss_pred EEEEcCCc-ccccccccCCceEEEeCC
Q psy4436 128 MVFFDDEE-RNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 128 ~l~vgD~~-~di~~a~~~G~~~i~v~~ 153 (171)
++||||+. .|+.+|+++|+.++++.+
T Consensus 171 ~~~vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 171 VLMVGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred EEEEcCCcHHHHHHHHHCCCcEEEECC
Confidence 99999998 599999999999999964
No 32
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.87 E-value=2.7e-22 Score=147.09 Aligned_cols=105 Identities=24% Similarity=0.280 Sum_probs=88.8
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh-cCcccccceee-----EecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL-FNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~-~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
..++||+.++|+.|+++|++++|+||++. ......+.. .++..+|+.+. ...||+|+.|+.+++++|++|+++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~-~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNR-LHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 35799999999999999999999999977 444434444 46777887662 234999999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEeCCCCcHHHH
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHVKDGMSHSVL 160 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~ 160 (171)
+||||+..|+.+|+++|+.++++.++.+..+.
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~ 193 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDKQTIPDY 193 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCCccHHHH
Confidence 99999999999999999999999887765544
No 33
>COG4996 Predicted phosphatase [General function prediction only]
Probab=99.87 E-value=7.2e-21 Score=126.68 Aligned_cols=134 Identities=25% Similarity=0.461 Sum_probs=115.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecC-ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
++|+||+||||||++..+.+.+||.+.+ ..+.|..+..+.++|.|+++++.+++.|+.++.+|.+.. +.+.+.+..++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~-~kA~~aLral~ 79 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE-DKAIKALRALD 79 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch-HHHHHHHHHhc
Confidence 3799999999999999999999999999 999999999999999999999999999999999999866 88888999999
Q ss_pred cccccceeeEecCCcH-HHHHHHHHHh------CCCCCcEEEEcCCccccccccc-CC-ceEEEe
Q psy4436 96 WNQHFDHKEIFPGQKT-THFANLKKAT------GIEYKDMVFFDDEERNSHDVSP-LG-VTCIHV 151 (171)
Q Consensus 96 l~~~fd~~~~~~~~k~-~~~~~~~~~~------~~~~~~~l~vgD~~~di~~a~~-~G-~~~i~v 151 (171)
+..||++..+.|.|.. .++.++++.+ .++|.+++|++|+...+...+. +| ++++..
T Consensus 80 ~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~ 144 (164)
T COG4996 80 LLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEM 144 (164)
T ss_pred hhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEe
Confidence 9999999877776643 5566666544 4789999999999998777666 66 455544
No 34
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.87 E-value=2.9e-22 Score=148.83 Aligned_cols=100 Identities=8% Similarity=0.052 Sum_probs=90.3
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHh-CCCCCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKAT-GIEYKD 127 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~-~~~~~~ 127 (171)
...++||+.++|+.|+++ ++++++||++. ......++.+++..+|+.+.. ..||+|.+|+++++++ +++|++
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~-~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVR-ETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCch-HHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 357899999999999999 99999999987 777889999999999988732 3489999999999999 999999
Q ss_pred EEEEcCCc-ccccccccCCceEEEeCCCC
Q psy4436 128 MVFFDDEE-RNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 128 ~l~vgD~~-~di~~a~~~G~~~i~v~~g~ 155 (171)
++||||+. .|+.+|+++|++++++.++.
T Consensus 173 ~v~igD~~~~di~~A~~~G~~~i~~~~~~ 201 (224)
T TIGR02254 173 VLMIGDSLTADIKGGQNAGLDTCWMNPDM 201 (224)
T ss_pred eEEECCCcHHHHHHHHHCCCcEEEECCCC
Confidence 99999998 69999999999999997753
No 35
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.86 E-value=3.1e-22 Score=148.57 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=107.4
Q ss_pred CCCCCCcccccCCcEEEEeCCCCCCCceecccc----CCc----------------c-----------eecCceeeccCC
Q psy4436 4 IPHKLDPSVKKFPKLAVFDLDHTLWPFHVYIDV----IPP----------------F-----------KKIGDKVLDAGG 52 (171)
Q Consensus 4 ~~~~~~~~~~~~~k~vvfDlDgTL~~~~~~~~~----~~~----------------~-----------~~~~~~~~~~~~ 52 (171)
|.++.-+.+..+.|+++||+||||++......+ +.+ + .......++...
T Consensus 2 ~~~~~~~~~~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (219)
T TIGR00338 2 IAHSELSPLLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVR 81 (219)
T ss_pred cccccchhhhccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344444455567899999999999986544221 110 0 000000111222
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----------e-----EecCCcHHHHHHH
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----------E-----IFPGQKTTHFANL 117 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----------~-----~~~~~k~~~~~~~ 117 (171)
....++||+.++|+.|+++|++++|+||+.. ..+..+++.+++..+|+.. . ..++||+..|+++
T Consensus 82 ~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~-~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 82 ENLPLTEGAEELVKTLKEKGYKVAVISGGFD-LFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred hcCCcCCCHHHHHHHHHHCCCEEEEECCCcH-HHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 3467899999999999999999999999977 7788899999998888421 0 1125689999999
Q ss_pred HHHhCCCCCcEEEEcCCcccccccccCCceEE
Q psy4436 118 KKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 118 ~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
+++++++|++++||||+.+|+.+|+++|+...
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~ 192 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGIA 192 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999753
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.86 E-value=2.9e-22 Score=147.95 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=85.3
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhH-HHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEML-RAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~-~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
...++||+.++|+.|+++|++++|+||++... .....+...++..+|+.+. ...||+|.+|+.++++++++|++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 46789999999999999999999999986522 1222344567778888762 13599999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
|+||||+..|+.+|+++|+.++++.++.
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 9999999999999999999999997644
No 37
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.86 E-value=1.1e-21 Score=141.85 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=84.9
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
..++||+.++|+.|+++|++++|+||+.. ....++.+++..+|+.+. ..+||+|+.|++++++++++|++++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 46899999999999999999999999744 345899999999998762 2358999999999999999999999
Q ss_pred EEcCCcccccccccCCceEEEeC
Q psy4436 130 FFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 130 ~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+|||+.+|+.+|+++|+.+++|.
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 163 GIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred EEecCHHHHHHHHHcCCEEEecC
Confidence 99999999999999999999873
No 38
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.86 E-value=1e-21 Score=134.48 Aligned_cols=116 Identities=28% Similarity=0.365 Sum_probs=90.5
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC-
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN- 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~- 95 (171)
|+++||||||||+........ ..+... . .++||+.++|+.|+++|++++++||++.+......++..+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~-------~~~~~~---~-~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGE-------DPIIDL---E-VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCcccccC-------Ccchhh---H-HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 689999999999864321000 000000 1 5799999999999999999999999944377877888888
Q ss_pred ------cccccceeeEe-cCCcHHHHHHHHHHhC--CCCCcEEEEcCCccccccccc
Q psy4436 96 ------WNQHFDHKEIF-PGQKTTHFANLKKATG--IEYKDMVFFDDEERNSHDVSP 143 (171)
Q Consensus 96 ------l~~~fd~~~~~-~~~k~~~~~~~~~~~~--~~~~~~l~vgD~~~di~~a~~ 143 (171)
+..+|+.+... .+|+|+.|..+++++| ++|++|+||||+..|+...++
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred cccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHHh
Confidence 78888876333 4688888999999999 999999999999999876554
No 39
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.86 E-value=1.6e-21 Score=141.00 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=85.1
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|+++|++++++||+ . .+...++.+++..+|+.+.. .+||++++|.+++++++++|+++
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~--~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-K--NADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-h--hHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 3678999999999999999999999998 3 35668999999999987722 35888999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEEe
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~v 151 (171)
+||||+..|+.+|+++|+.++.|
T Consensus 163 v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 163 VVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred EEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999875
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.86 E-value=1e-21 Score=141.49 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=84.5
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
.+++||+.++|+.|+++|++++++||++. .. .....++++..+|+.+.. .+||+|..|+.++++++++|++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~-~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPR-DH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCch-HH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 57899999999999999999999999987 44 545566999999987622 358999999999999999999999
Q ss_pred EEcCCcccccccccCCceEEEe
Q psy4436 130 FFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 130 ~vgD~~~di~~a~~~G~~~i~v 151 (171)
||||+..|+.+|+++|+.++++
T Consensus 162 ~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEcCCHHHHHHHHHcCCEEEeC
Confidence 9999999999999999999875
No 41
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.86 E-value=4.1e-21 Score=137.59 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=97.6
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
.+++|++|+||||+.. ....++|++.++|+.|+++|++++++||++....+..+++.+
T Consensus 24 ~v~~vv~D~Dgtl~~~----------------------~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 24 GIKGVVLDKDNTLVYP----------------------DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CCCEEEEecCCccccC----------------------CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 4689999999999752 134679999999999999999999999997225566566777
Q ss_pred CcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceEEEeCCCCc
Q psy4436 95 NWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 95 ~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~i~v~~g~~ 156 (171)
++..++ ...||++++|..+++++++++++++||||+. .|+.+|+++|+.++++.+|..
T Consensus 82 gl~~~~----~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~ 140 (170)
T TIGR01668 82 GIPVLP----HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVH 140 (170)
T ss_pred CCEEEc----CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcC
Confidence 765332 2348999999999999999999999999998 599999999999999988763
No 42
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.85 E-value=2.9e-21 Score=137.42 Aligned_cols=98 Identities=16% Similarity=0.269 Sum_probs=90.0
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....++|++.++|+.|+++|++++++||++. ......++.+++..+|+.+.. .+||++..|++++++++++|++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~-~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR-ERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEH-HHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCc-ccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999999999987 777789999999999987722 3489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEe
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
++||||+..|+.+|+++|+.+++|
T Consensus 153 ~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 153 ILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEEESSHHHHHHHHHTTSEEEEE
T ss_pred EEEEeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999999986
No 43
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.85 E-value=1.8e-21 Score=142.93 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=83.7
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----EecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
..++||+.++|+.|+++|++++|+||+.. . ....++.+++..+|+.+. ...||+|++|.+++++++++|++++
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEE
Confidence 46899999999999999999999999865 4 466899999999998772 2348999999999999999999999
Q ss_pred EEcCCc-ccccccccCCceEEE
Q psy4436 130 FFDDEE-RNSHDVSPLGVTCIH 150 (171)
Q Consensus 130 ~vgD~~-~di~~a~~~G~~~i~ 150 (171)
+|||+. .|+.+|+++|+.+++
T Consensus 182 ~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 182 HIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EECCCchHHHHHHHHcCCeeeC
Confidence 999998 799999999999874
No 44
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.84 E-value=1.6e-21 Score=141.22 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=83.5
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----e----cCCcHHHHHHHHHHhCCC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----F----PGQKTTHFANLKKATGIE 124 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~----~~~k~~~~~~~~~~~~~~ 124 (171)
..+++||+.++|+.|+ ++++++||++. ......++.+|+..+|+.+.. . +||+|++|+.++++++++
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~-~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDR-AHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCH-HHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 4568999999999998 47999999988 777889999999999987622 1 489999999999999999
Q ss_pred CCcEEEEcCCcccccccccCCceEEEe
Q psy4436 125 YKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 125 ~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
|++++||||+..|+.+|+++|+.+++|
T Consensus 158 ~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 158 PERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred ccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999875
No 45
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=6.8e-21 Score=146.85 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=85.1
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc---cee--e--EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF---DHK--E--IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f---d~~--~--~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
+.++||+.++|+.|+++|++++|+||++. ......++.+....+| +.+ + ..+||+|++|.+++++++++|++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNE-KAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 47899999999999999999999999988 6666677766433333 332 1 13489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
++||||+..|+.+|+++|+.++++.+|..
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 250 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTKSSYT 250 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEccCCc
Confidence 99999999999999999999999988754
No 46
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.84 E-value=7.2e-21 Score=135.70 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=93.0
Q ss_pred CcEEEEeCCCCCCCceecc-ccCCcceecCceeeccCCCeee-eCCCHHHHHHHHhhCCcEEEEEcCCchh---------
Q psy4436 16 PKLAVFDLDHTLWPFHVYI-DVIPPFKKIGDKVLDAGGAIIK-YYRDVPAILKYLKQNNCLVAAASRTTEM--------- 84 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~L~~~g~~i~i~S~~~~~--------- 84 (171)
.|+++||+||||+...... ++ .....++ ++||+.++|+.|+++|++++|+||++..
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~-------------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~ 79 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFP-------------TSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAES 79 (166)
T ss_pred CcEEEEeCCCceEecCCCCccc-------------CChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHH
Confidence 5889999999998633211 10 0112333 6899999999999999999999998652
Q ss_pred --HHHHHHHHhcCccccccee----eEecCCcHHHHHHHHHHhC--CCCCcEEEEcCCc--------ccccccccCCceE
Q psy4436 85 --LRAHQLVDLFNWNQHFDHK----EIFPGQKTTHFANLKKATG--IEYKDMVFFDDEE--------RNSHDVSPLGVTC 148 (171)
Q Consensus 85 --~~~~~~l~~~~l~~~fd~~----~~~~~~k~~~~~~~~~~~~--~~~~~~l~vgD~~--------~di~~a~~~G~~~ 148 (171)
..+...++.+++.. +..+ ...+||++++++.++++++ +++++++||||+. .|+.+|+++|+.+
T Consensus 80 ~~~~i~~~l~~~gl~~-~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 80 FKNKIEAFLEKLKVPI-QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred HHHHHHHHHHHcCCCE-EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 13456889999863 2222 1235889999999999999 9999999999997 5999999999987
Q ss_pred EE
Q psy4436 149 IH 150 (171)
Q Consensus 149 i~ 150 (171)
+.
T Consensus 159 ~~ 160 (166)
T TIGR01664 159 KY 160 (166)
T ss_pred CC
Confidence 64
No 47
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.84 E-value=1.7e-21 Score=144.88 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=84.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc-eee-----EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD-HKE-----IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd-~~~-----~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
...++||+.++|+.|+ ++++|+||++. ..+...++.+++..+|+ .+. ...||+|+.|..++++++++|++
T Consensus 86 ~~~~~~gv~~~L~~L~---~~~~ivTn~~~-~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 86 ELEPIAGANALLESIT---VPMCVVSNGPV-SKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred cCCcCCCHHHHHHHcC---CCEEEEeCCcH-HHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 4678999999999993 89999999987 77788999999999995 331 23489999999999999999999
Q ss_pred EEEEcCCcccccccccCCceEEEeC
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
|+||||+..|+.+|+++|+.++++.
T Consensus 162 ~l~igDs~~di~aA~~aG~~~i~~~ 186 (221)
T PRK10563 162 CILVDDSSAGAQSGIAAGMEVFYFC 186 (221)
T ss_pred eEEEeCcHhhHHHHHHCCCEEEEEC
Confidence 9999999999999999999999885
No 48
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.84 E-value=3.6e-21 Score=143.42 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=88.7
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-----eEecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-----EIFPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-----~~~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
..+++|++.+.|+.|++. ++++++||+.. ......+..+|+..+|+.+ .+..||.+++|+.+++++|++|+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~-~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGAR-PHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCCh-HHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 478899999999999999 99999999866 6677799999999999987 2245999999999999999999999
Q ss_pred EEEcCCccc-ccccccCCceEEEeCCC
Q psy4436 129 VFFDDEERN-SHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 129 l~vgD~~~d-i~~a~~~G~~~i~v~~g 154 (171)
+||||+..+ +.+|+++|+++|++..+
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCC
Confidence 999999995 59999999999998653
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.83 E-value=8e-21 Score=142.94 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=82.2
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----ecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----FPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+.|++. ++++++||++. . ++..|+..+|+.+.. ..||++.+|..++++++++|++|
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~-~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNA-Q-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCc-h-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 467889999999999975 99999999866 3 467899999987732 34899999999999999999999
Q ss_pred EEEcCCc-ccccccccCCceEEEeCCC
Q psy4436 129 VFFDDEE-RNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 129 l~vgD~~-~di~~a~~~G~~~i~v~~g 154 (171)
+||||+. .|+.+|+++|+.++++..+
T Consensus 184 ~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred EEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 9999995 8999999999999999653
No 50
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.83 E-value=5.1e-20 Score=131.32 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCC-CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYR-DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
.+|++|||+||||+|..++. ...+.+..-|. -=...++.|+++|++++|+||++. ..++..++.
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~--------------~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~-~~~~~~l~~ 70 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVI--------------NDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKS-GAVRHRAEE 70 (169)
T ss_pred cCeEEEEeCceeeECCeEEE--------------cCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCc-HHHHHHHHH
Confidence 48999999999999976542 22333332222 223468999999999999999988 788889999
Q ss_pred cCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 94 FNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 94 ~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
+++..+|+.. +|||..++.++++++++++++++|||+.+|+.+++.+|+..+.-
T Consensus 71 lgi~~~f~~~----kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 71 LKIKRFHEGI----KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred CCCcEEEecC----CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 9999888753 68888899999999999999999999999999999999765443
No 51
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.82 E-value=2.8e-20 Score=131.25 Aligned_cols=121 Identities=11% Similarity=0.145 Sum_probs=95.0
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|+|+||+||||+++++..... ......+.+.++. +|+.|+++|++++|+||++. ..+...+++++
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~-----------~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~-~~~~~~l~~~g 66 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNN-----------GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKA-KLVEDRCKTLG 66 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCC-----------CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCC-HHHHHHHHHcC
Confidence 5899999999999866531100 0000112222332 89999999999999999988 67777999999
Q ss_pred cccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 96 WNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 96 l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
+..+|+. .+||++.++++++++++++++++||||+.+|+.+++++|+. +.+.++.
T Consensus 67 i~~~~~~----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~-~~v~~~~ 121 (154)
T TIGR01670 67 ITHLYQG----QSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS-VAVADAH 121 (154)
T ss_pred CCEEEec----ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe-EecCCcC
Confidence 9988764 36788999999999999999999999999999999999996 7776553
No 52
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.82 E-value=2.7e-19 Score=140.59 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=107.8
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc-------------
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT------------- 82 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~------------- 82 (171)
.|+++||.||||+...... ..........++||+.++|+.|+++|++++|+||++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~------------y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~ 69 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTD------------FQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFD 69 (354)
T ss_pred CcEEEEeCCCCccCCCCcc------------ccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHh
Confidence 5789999999998743321 122234568999999999999999999999999951
Q ss_pred --hhHHHHHHHHhcCcccccceee----------EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEE
Q psy4436 83 --EMLRAHQLVDLFNWNQHFDHKE----------IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 83 --~~~~~~~~l~~~~l~~~fd~~~----------~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~ 150 (171)
. ......++.+++. |+.+. .+.||++.++..++++++++|++++||||+..|+.+|+++|+.+++
T Consensus 70 ~~~-~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~ 146 (354)
T PRK05446 70 PPH-NLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIR 146 (354)
T ss_pred hHH-HHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEE
Confidence 2 3455577788874 54331 1448999999999999999999999999999999999999999999
Q ss_pred e-CCCCcHHHHHHHHH
Q psy4436 151 V-KDGMSHSVLHKGLK 165 (171)
Q Consensus 151 v-~~g~~~~~~~~~~~ 165 (171)
+ +.+.+++++.+.|.
T Consensus 147 v~~~~~~~~~i~~~l~ 162 (354)
T PRK05446 147 YARETLNWDAIAEQLT 162 (354)
T ss_pred EECCCCCHHHHHHHHh
Confidence 9 45778888776654
No 53
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=135.59 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=79.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc----ceeeE--ecCCcHHHHHHHHHHhCCCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF----DHKEI--FPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f----d~~~~--~~~~k~~~~~~~~~~~~~~~~ 126 (171)
....++||+.++|+.|++. ++++++||.+. ......++.+++..+| +.+.. ..+|||+.|..++++++ |+
T Consensus 71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~-~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~ 146 (197)
T PHA02597 71 RYLSAYDDALDVINKLKED-YDFVAVTALGD-SIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DR 146 (197)
T ss_pred HhccCCCCHHHHHHHHHhc-CCEEEEeCCcc-chhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CC
Confidence 3466899999999999987 46788888765 4444466677776544 44422 23778899999999999 89
Q ss_pred cEEEEcCCcccccccccC--CceEEEeCCCCc
Q psy4436 127 DMVFFDDEERNSHDVSPL--GVTCIHVKDGMS 156 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~--G~~~i~v~~g~~ 156 (171)
+++||||+..|+.+|+++ |+.++++.+|..
T Consensus 147 ~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 147 VVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred cEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 999999999999999999 999999988863
No 54
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.82 E-value=1.4e-20 Score=153.75 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=88.0
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE----ecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI----FPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~----~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
..+++||+.++|+.|+++|++++|+||++. ..+...++++++..||+.+.. ..+|||..|..+++++ +|++|+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~-~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v 404 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLT-EYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKY--DIKEAA 404 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhc--CcceEE
Confidence 457899999999999999999999999988 888889999999999988722 2357888899999876 478999
Q ss_pred EEcCCcccccccccCCceEEEeCCCCc
Q psy4436 130 FFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 130 ~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+|||+..|+.+|+++|+.++++.++..
T Consensus 405 ~VGDs~~Di~aAk~AG~~~I~v~~~~~ 431 (459)
T PRK06698 405 VVGDRLSDINAAKDNGLIAIGCNFDFA 431 (459)
T ss_pred EEeCCHHHHHHHHHCCCeEEEEeCCCC
Confidence 999999999999999999999987653
No 55
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.81 E-value=8.8e-20 Score=142.76 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=101.3
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh-
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL- 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~- 93 (171)
.+|+||||+|+|||..-+.+.... ......+++++.++|+.|+++|++++|+|+++. ..+...++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~------------~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~-~~a~~~l~~~ 68 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGID------------NLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE-DDAKKVFERR 68 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCcc------------ccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH-HHHHHHHHhC
Confidence 479999999999998655432110 001224689999999999999999999999988 778889999
Q ss_pred ---cCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCce
Q psy4436 94 ---FNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 94 ---~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~ 147 (171)
+++..+|+.+....+||+..+..+++++|+++++++||||++.|+..+++.+..
T Consensus 69 ~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 69 KDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred ccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence 899999999877779999999999999999999999999999999999996653
No 56
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.81 E-value=5e-20 Score=162.30 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=93.2
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc-cccceeeE-----ecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN-QHFDHKEI-----FPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~-~~fd~~~~-----~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
.++||+.++|+.|+++|++++|+||+.. ..+...++++++. .+|+.+.. ..||+|++|..++++++++|++|+
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~-~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADR-IKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcH-HHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 4699999999999999999999999987 7778889999996 78887722 248999999999999999999999
Q ss_pred EEcCCcccccccccCCceEEEeCCCCcHHHHH
Q psy4436 130 FFDDEERNSHDVSPLGVTCIHVKDGMSHSVLH 161 (171)
Q Consensus 130 ~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~ 161 (171)
||||+..|+.+|+++|+.++++.++...+++.
T Consensus 240 ~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~ 271 (1057)
T PLN02919 240 VIEDALAGVQAARAAGMRCIAVTTTLSEEILK 271 (1057)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCCCCHHHHh
Confidence 99999999999999999999999887655443
No 57
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.81 E-value=5.9e-20 Score=136.24 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=85.5
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc---Cccccccee---eEecCCcHHHHHHHHHHhCCCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF---NWNQHFDHK---EIFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~---~l~~~fd~~---~~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
....++||+.++|+.|+++|++++|+||++. ...+..+++. ++..+|+.. ...+||+++.|.+++++++++|+
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~-~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSV-PAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChh
Confidence 4557999999999999999999999999987 6566566664 555555433 23469999999999999999999
Q ss_pred cEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
+++||||+..|+.+|+++|+.++++.++
T Consensus 171 e~lfVgDs~~Di~AA~~AG~~ti~v~r~ 198 (220)
T TIGR01691 171 EILFLSDIINELDAARKAGLHTGQLVRP 198 (220)
T ss_pred HEEEEeCCHHHHHHHHHcCCEEEEEECC
Confidence 9999999999999999999999998553
No 58
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.81 E-value=1.5e-19 Score=123.41 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=99.0
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+++||+||||++....... .....+++++.++|+.|+++|++++++||+.. .....+++.+++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~-~~~~~~~~~~~~~ 64 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSR-REVLELLEELGLD 64 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHHcCCc
Confidence 4899999999986654321 33568899999999999999999999999987 7788899999986
Q ss_pred cccceeeE-----ec----------------CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 98 QHFDHKEI-----FP----------------GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 98 ~~fd~~~~-----~~----------------~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
.+|+.+.. .. +|++..+..++++++.++++++||||+..|+.+++++|+.++++
T Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 65 DYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred hhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 66654311 11 78899999999999999999999999999999999999998864
No 59
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.80 E-value=8.7e-20 Score=136.48 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=97.0
Q ss_pred cCCc-EEEEeCCCCCCCceeccccCCc-ceec--------C--ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 14 KFPK-LAVFDLDHTLWPFHVYIDVIPP-FKKI--------G--DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 14 ~~~k-~vvfDlDgTL~~~~~~~~~~~~-~~~~--------~--~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
..++ +|+||+||||+|+......+.+ +.+. . ..+.........+.+++.++|+.|+++|++++++||+
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3344 8999999999987664222221 1111 0 1222222334566777999999999999999999998
Q ss_pred ----chhHHHHHHHHhcCcccccceeeE---e--cCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 82 ----TEMLRAHQLVDLFNWNQHFDHKEI---F--PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 82 ----~~~~~~~~~l~~~~l~~~fd~~~~---~--~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
.. ..+..+++.+|+..+|+.+.. . +||.+ . .+++++++ ++||||+..|+.+|+++|+.++.+.
T Consensus 140 ~~~k~~-~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~--~-~~l~~~~i----~i~vGDs~~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 140 TPGKTD-TVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTK--T-QWIQDKNI----RIHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CCCcCH-HHHHHHHHHhCCchheeEEECCCCCCCCCCCH--H-HHHHhCCC----eEEEeCCHHHHHHHHHCCCCEEEEE
Confidence 44 577878889999999876622 1 24444 3 35566665 7999999999999999999999998
Q ss_pred CCCc
Q psy4436 153 DGMS 156 (171)
Q Consensus 153 ~g~~ 156 (171)
+|++
T Consensus 212 ~g~~ 215 (237)
T TIGR01672 212 RASN 215 (237)
T ss_pred ecCC
Confidence 8764
No 60
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.80 E-value=9.7e-20 Score=128.14 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=79.1
Q ss_pred CCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee----EecCCcHHHHHHHHHHhCCCCCc
Q psy4436 52 GAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE----IFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 52 ~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~----~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
......+||+.++|+.|+++|++++++||++. ......++.+ +..+|+.+. ..+||+++.|.+++++++++| +
T Consensus 60 ~~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~-~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~ 136 (154)
T TIGR01549 60 DAEEAYIRGAADLLKRLKEAGIKLGIISNGSL-RAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-E 136 (154)
T ss_pred chhheeccCHHHHHHHHHHCcCeEEEEeCCch-HHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-C
Confidence 34566789999999999999999999999988 6677788887 777887652 225899999999999999999 9
Q ss_pred EEEEcCCcccccccccCC
Q psy4436 128 MVFFDDEERNSHDVSPLG 145 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G 145 (171)
++||||+..|+.+|+++|
T Consensus 137 ~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 137 VLHVGDNLNDIEGARNAG 154 (154)
T ss_pred EEEEeCCHHHHHHHHHcc
Confidence 999999999999999987
No 61
>PLN02954 phosphoserine phosphatase
Probab=99.80 E-value=8.7e-20 Score=135.86 Aligned_cols=143 Identities=18% Similarity=0.219 Sum_probs=100.8
Q ss_pred CCCcccccCCcEEEEeCCCCCCCceeccccC----C----------------ccee--------cC------ceeeccCC
Q psy4436 7 KLDPSVKKFPKLAVFDLDHTLWPFHVYIDVI----P----------------PFKK--------IG------DKVLDAGG 52 (171)
Q Consensus 7 ~~~~~~~~~~k~vvfDlDgTL~~~~~~~~~~----~----------------~~~~--------~~------~~~~~~~~ 52 (171)
.....+..++|+|+|||||||++......+. . ++.. .. ..+...
T Consensus 3 ~~~~~~~~~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (224)
T PLN02954 3 KDVLELWRSADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEK-- 80 (224)
T ss_pred HHHHHHHccCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH--
Confidence 3344455668999999999999865532211 1 1100 00 000111
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc--ccccee---------e--------EecCCcHHH
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN--QHFDHK---------E--------IFPGQKTTH 113 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~--~~fd~~---------~--------~~~~~k~~~ 113 (171)
....++||+.++|+.|+++|++++|+|++.. ..+...++.+++. .+|+.. . ...++|+..
T Consensus 81 ~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~-~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~ 159 (224)
T PLN02954 81 RPPRLSPGIPELVKKLRARGTDVYLVSGGFR-QMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEA 159 (224)
T ss_pred ccCCCCccHHHHHHHHHHCCCEEEEECCCcH-HHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHH
Confidence 1245899999999999999999999999988 7788899999986 355321 0 012568888
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 114 FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
+++++++++. ++++||||+.+|+.+|+++|+.++...++
T Consensus 160 i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~ 198 (224)
T PLN02954 160 VQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGG 198 (224)
T ss_pred HHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCC
Confidence 9999988874 69999999999999999888876655443
No 62
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.80 E-value=5.4e-19 Score=122.68 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=95.6
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|.|++|+|+||++.- .....|++++.++.+++.|+++.|+||+++ ..+..+.++++
T Consensus 28 ikgvi~DlDNTLv~wd----------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e-~RV~~~~~~l~ 84 (175)
T COG2179 28 IKGVILDLDNTLVPWD----------------------NPDATPELRAWLAELKEAGIKVVVVSNNKE-SRVARAAEKLG 84 (175)
T ss_pred CcEEEEeccCceeccc----------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCH-HHHHhhhhhcC
Confidence 6899999999997621 234578999999999999999999999987 66666899999
Q ss_pred cccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-cccccccCCceEEEeCC
Q psy4436 96 WNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER-NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 96 l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~ 153 (171)
++.+ ....||-+..|.+++++++++++++++|||..- |+.+++.+|+.+|.|..
T Consensus 85 v~fi----~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 85 VPFI----YRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred Ccee----ecccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEE
Confidence 7722 233478888899999999999999999999999 99999999999999964
No 63
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.79 E-value=1.4e-19 Score=132.38 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=83.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----e----------cCCcHHHHHHHH
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----F----------PGQKTTHFANLK 118 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----~----------~~~k~~~~~~~~ 118 (171)
...++||+.++|+.|+++|++++|+||+.. ..+...++.+|+..+|+.... . +.+|+..+++++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIM-CLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 467899999999999999999999999987 778889999998877753311 1 134557889999
Q ss_pred HHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 119 KATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 119 ~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
+++++++++++||||+.+|+.+|+.+|+.++..+.+
T Consensus 157 ~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 157 RELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 999999999999999999999999999977665543
No 64
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.78 E-value=5.9e-19 Score=127.83 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=92.5
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCC-HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRD-VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
.+|+|+||+||||++..++... .+.....+.- =...++.|+++|++++|+||++. ..+...++.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~--------------~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~-~~v~~~l~~ 84 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGN--------------NGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKS-KLVEDRMTT 84 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcC--------------CCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCc-HHHHHHHHH
Confidence 3899999999999986543110 1111111111 12578889999999999999988 777889999
Q ss_pred cCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 94 FNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 94 ~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+++..+|+. .++|+..++++++++++++++++||||+.+|+.+++++|+.+ .+.
T Consensus 85 lgl~~~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~-~v~ 138 (183)
T PRK09484 85 LGITHLYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSV-AVA 138 (183)
T ss_pred cCCceeecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeE-ecC
Confidence 999888763 356788899999999999999999999999999999999984 454
No 65
>KOG3085|consensus
Probab=99.78 E-value=6.6e-19 Score=130.51 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=90.4
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-----eEecCCcHHHHHHHHHHhCCCCCc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-----EIFPGQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-----~~~~~~k~~~~~~~~~~~~~~~~~ 127 (171)
....+.+++.+++++|++.|+.++++||-.. ..+..+..+++..+||.+ .+..||+|++|+.+++++++.|++
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~--r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee 187 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDD--RLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEE 187 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcH--HHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHH
Confidence 3567788999999999999999999999754 456789999999999877 345699999999999999999999
Q ss_pred EEEEcCCcc-cccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEER-NSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~-di~~a~~~G~~~i~v~~g~~ 156 (171)
|++|||+.. |+.+|+++||+++.|.+..+
T Consensus 188 ~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 188 CVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred eEEecCccccccHhHHHcCCEEEEEccccc
Confidence 999999999 59999999999999976554
No 66
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.76 E-value=3.7e-18 Score=132.37 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=104.0
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
.+++++||+||||.+..... ++.. . ......++|++.++|+.|+++|++++++||++. ......++.+
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~----~~~~-----~--~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~-~~~~~~l~~l 224 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRS----PYDW-----T--KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDG-VCEEDTVEWL 224 (300)
T ss_pred CCCEEEEECCCcCcCCCCCC----ccch-----h--hcccCCCChhHHHHHHHHHhCCCEEEEEeCCCh-hhHHHHHHHH
Confidence 35799999999998632210 0000 0 012346799999999999999999999999988 7788899999
Q ss_pred Cccc-ccceeeEe------------cCCcHHHHHHHHHHhCC-CCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 95 NWNQ-HFDHKEIF------------PGQKTTHFANLKKATGI-EYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 95 ~l~~-~fd~~~~~------------~~~k~~~~~~~~~~~~~-~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
++.. +|+.+.+. .+|+|..+..++++++. +++++++|||+..|+.+|+++|+.+++|.||.
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 9986 78765222 28889999999999988 68999999999999999999999999998873
No 67
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.75 E-value=1.3e-18 Score=135.84 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCcEEEEeCCCCCCCceeccccCC--------------------cceec--------C---ceeeccCCCeeeeCCCHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIP--------------------PFKKI--------G---DKVLDAGGAIIKYYRDVPA 63 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~--------------------~~~~~--------~---~~~~~~~~~~~~~~~~v~~ 63 (171)
.+++++|||||||+..++...+.. +|... . ..+++......+++||+.+
T Consensus 109 ~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l~pGa~e 188 (322)
T PRK11133 109 TPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPLMPGLTE 188 (322)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCCChhHHH
Confidence 479999999999996555432110 11100 0 1112222345789999999
Q ss_pred HHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-e--------------EecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 64 ILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-E--------------IFPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~--------------~~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
+|+.|++.|++++|+|++.. .....+++++++...|... + ...++|++.++.+++++|++++++
T Consensus 189 lL~~Lk~~G~~~aIvSgg~~-~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~~qt 267 (322)
T PRK11133 189 LVLKLQALGWKVAIASGGFT-YFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQT 267 (322)
T ss_pred HHHHHHHcCCEEEEEECCcc-hhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCChhhE
Confidence 99999999999999999976 6677788888887644311 0 023689999999999999999999
Q ss_pred EEEcCCcccccccccCCceEEE
Q psy4436 129 VFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~~~i~ 150 (171)
++|||+.+|+.+++.+|+....
T Consensus 268 IaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 268 VAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred EEEECCHHHHHHHHHCCCeEEe
Confidence 9999999999999999986554
No 68
>PRK10444 UMP phosphatase; Provisional
Probab=99.74 E-value=2.2e-17 Score=124.83 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=93.7
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHHHHHHHh
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRAHQLVDL 93 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~~ 93 (171)
+|+++||+|||||+ .-.++|++.++++.|+++|++++++||++.. ......+..
T Consensus 1 ~~~v~~DlDGtL~~------------------------~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~ 56 (248)
T PRK10444 1 IKNVICDIDGVLMH------------------------DNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT 56 (248)
T ss_pred CcEEEEeCCCceEe------------------------CCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 57899999999977 2256899999999999999999999998662 223334555
Q ss_pred cCccc---------------------------------------------------------------------------
Q psy4436 94 FNWNQ--------------------------------------------------------------------------- 98 (171)
Q Consensus 94 ~~l~~--------------------------------------------------------------------------- 98 (171)
+|+..
T Consensus 57 ~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~ 136 (248)
T PRK10444 57 AGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGA 136 (248)
T ss_pred cCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCC
Confidence 66632
Q ss_pred -----------------------cccee-----eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceEE
Q psy4436 99 -----------------------HFDHK-----EIFPGQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTCI 149 (171)
Q Consensus 99 -----------------------~fd~~-----~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~i 149 (171)
.+... ....||++.+|+.+++++++++++++||||+. .|+.+|+++|+.++
T Consensus 137 ~~i~~n~D~~~~g~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~v 216 (248)
T PRK10444 137 RFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI 216 (248)
T ss_pred EEEEECCCCCCCCCcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEE
Confidence 00000 11238899999999999999999999999997 69999999999999
Q ss_pred EeCCCCcH
Q psy4436 150 HVKDGMSH 157 (171)
Q Consensus 150 ~v~~g~~~ 157 (171)
++.+|.+.
T Consensus 217 lV~~G~~~ 224 (248)
T PRK10444 217 LVLSGVST 224 (248)
T ss_pred EECCCCCC
Confidence 99998754
No 69
>PLN02645 phosphoglycolate phosphatase
Probab=99.74 E-value=7.2e-18 Score=131.49 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceEEEeCCCCcH
Q psy4436 108 GQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTCIHVKDGMSH 157 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~i~v~~g~~~ 157 (171)
||++.+|+.+++++++++++++||||+. .|+.+|+++|+.+++|.+|...
T Consensus 230 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~ 280 (311)
T PLN02645 230 KPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTS 280 (311)
T ss_pred CChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCC
Confidence 7788999999999999999999999998 7999999999999999888753
No 70
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.73 E-value=2.8e-17 Score=124.46 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=46.8
Q ss_pred cCCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceEEEeCCCCc
Q psy4436 107 PGQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~i~v~~g~~ 156 (171)
.||++.+|+.+++++++++++++||||+. .|+..|+++|+.++++.+|..
T Consensus 177 gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~ 227 (249)
T TIGR01457 177 GKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVT 227 (249)
T ss_pred CCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCC
Confidence 38889999999999999999999999997 699999999999999998875
No 71
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.73 E-value=1.5e-17 Score=126.43 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=93.6
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHHHHHHHh
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRAHQLVDL 93 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~~ 93 (171)
.|+++||+|||||+..-. ...++|++.++|+.|+++|++++++||++.. ......++.
T Consensus 1 ~k~i~~D~DGtl~~~~~~--------------------~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~ 60 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAK--------------------SGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQR 60 (257)
T ss_pred CCEEEEeCCCeEEeCCCc--------------------ccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999762110 1126899999999999999999999997653 124445666
Q ss_pred cCccc---------------------------------------------------------------------------
Q psy4436 94 FNWNQ--------------------------------------------------------------------------- 98 (171)
Q Consensus 94 ~~l~~--------------------------------------------------------------------------- 98 (171)
+|+..
T Consensus 61 ~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Vv~g~~~~~~~y~~l~~a~~~L~~~~~~~~ 140 (257)
T TIGR01458 61 LGFDISEDEVFTPAPAARQLLEEKQLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFSYQILNQAFRLLLDGAKPLL 140 (257)
T ss_pred cCCCCCHHHeEcHHHHHHHHHHhcCCCeEEEECccHHHHhccCCCCCCCEEEEecccCccCHHHHHHHHHHHHcCCCCEE
Confidence 66543
Q ss_pred ---------------------cccee--------eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceE
Q psy4436 99 ---------------------HFDHK--------EIFPGQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTC 148 (171)
Q Consensus 99 ---------------------~fd~~--------~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~ 148 (171)
+|+.+ ....||++.+|+.++++++++|++++||||+. .|+.+|+++|+.+
T Consensus 141 iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~ 220 (257)
T TIGR01458 141 IAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRG 220 (257)
T ss_pred EEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeE
Confidence 11111 11248899999999999999999999999997 7999999999999
Q ss_pred EEeCCCC
Q psy4436 149 IHVKDGM 155 (171)
Q Consensus 149 i~v~~g~ 155 (171)
+++.+|.
T Consensus 221 i~v~~G~ 227 (257)
T TIGR01458 221 IQVRTGK 227 (257)
T ss_pred EEECCCC
Confidence 9998885
No 72
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.73 E-value=1.2e-17 Score=117.05 Aligned_cols=131 Identities=15% Similarity=-0.010 Sum_probs=93.0
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecC-ce-e--eccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIG-DK-V--LDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
+++|+|+||||++........ .-.... .. - .........++||+.++|+.|+ ++++++|+|+++. ..+...++
T Consensus 3 ~~lvldld~tl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~-~~~~~il~ 79 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKE-WTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLR-MYADPVLD 79 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCC-CCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcH-HHHHHHHH
Confidence 579999999998754311100 000000 00 0 0011235678999999999999 5799999999988 77888999
Q ss_pred hcCccc-ccceee---EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 93 LFNWNQ-HFDHKE---IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 93 ~~~l~~-~fd~~~---~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
.+++.. +|+.+. .+...||. |.+++++++.+|++|++|||+..++.+++++|+..--+
T Consensus 80 ~l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f 141 (148)
T smart00577 80 LLDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPW 141 (148)
T ss_pred HhCcCCCEeeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCc
Confidence 999865 456652 22223333 99999999999999999999999999999988755433
No 73
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.73 E-value=3.2e-17 Score=126.10 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHhCCCCCcEEEEcCCc-ccccccccCCceEEEeCCCCc-HHHHH
Q psy4436 107 PGQKTTHFANLKKATGIEYKDMVFFDDEE-RNSHDVSPLGVTCIHVKDGMS-HSVLH 161 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~~~~~~~~l~vgD~~-~di~~a~~~G~~~i~v~~g~~-~~~~~ 161 (171)
.||.+.+|..++++++++|++++||||+. .|+.+|+++|+.+++|.+|.. .++++
T Consensus 201 gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~ 257 (279)
T TIGR01452 201 GKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQ 257 (279)
T ss_pred CCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHH
Confidence 38888999999999999999999999995 799999999999999999875 44444
No 74
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.72 E-value=4.6e-17 Score=116.23 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=96.6
Q ss_pred CCcEEEEeCCCCCCCcee-ccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh---------
Q psy4436 15 FPKLAVFDLDHTLWPFHV-YIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--------- 84 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--------- 84 (171)
..++++||.||||..... +.+ ..+.+.+.|++.+++..|++.|++++++||.+--
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~---------------~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~ 68 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVD---------------SLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEAD 68 (181)
T ss_pred CCcEEEEcCCCceecCCCcccC---------------cHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHH
Confidence 478999999999985443 211 2246788999999999999999999999993211
Q ss_pred -----HHHHHHHHhcCcccccceee----------EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEE
Q psy4436 85 -----LRAHQLVDLFNWNQHFDHKE----------IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 85 -----~~~~~~l~~~~l~~~fd~~~----------~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
......++..|.. |+.+. .+.||++.+++.+++++++++++.++|||+..|+++|.++|+..+
T Consensus 69 f~~~~~~m~~~l~~~gv~--id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~ 146 (181)
T COG0241 69 FDKLHNKMLKILASQGVK--IDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGV 146 (181)
T ss_pred HHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCce
Confidence 2234455555542 44442 245999999999999999999999999999999999999999988
Q ss_pred EeCCCC
Q psy4436 150 HVKDGM 155 (171)
Q Consensus 150 ~v~~g~ 155 (171)
.+..+.
T Consensus 147 ~~~~~~ 152 (181)
T COG0241 147 LVLTGI 152 (181)
T ss_pred EEEcCc
Confidence 886543
No 75
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.71 E-value=1.8e-18 Score=124.05 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=72.9
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----e-EecCCcHHHHHHHHHHhCCCCCcE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----E-IFPGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----~-~~~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
...++||+.++|+ +++|+||++. ......++++++..+|+.+ + ...||+|+.|+.+++++|++|++|
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~-~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASH-WAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCH-HHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 4568999999998 3899999988 7778899999999999865 1 345999999999999999999999
Q ss_pred EEEcCCcccccccccC
Q psy4436 129 VFFDDEERNSHDVSPL 144 (171)
Q Consensus 129 l~vgD~~~di~~a~~~ 144 (171)
+||||+.+|+.+|+++
T Consensus 160 l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 160 LMVAAHQWDLIGARKF 175 (175)
T ss_pred EeEecChhhHHHHhcC
Confidence 9999999999999864
No 76
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.71 E-value=2.9e-17 Score=118.81 Aligned_cols=91 Identities=9% Similarity=0.083 Sum_probs=75.2
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEe---------------------c----C
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF---------------------P----G 108 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~---------------------~----~ 108 (171)
..+++|++.++|+.|+++|++++++||+.. ......++.+++..+|+.+... + .
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGND-FFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcH-HHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 367899999999999999999999999987 6777789999999888765210 1 2
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceE
Q psy4436 109 QKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 109 ~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
.|++.++++.+++ +++++||||+.+|+.+|+++++.+
T Consensus 149 ~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 149 CKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 4677788777654 899999999999999999987643
No 77
>PTZ00445 p36-lilke protein; Provisional
Probab=99.70 E-value=3.5e-17 Score=118.50 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=94.6
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhH---------
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEML--------- 85 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~--------- 85 (171)
-+|+|++|+|.||+.-|+.....+ ..+...-...+.|+...++++|++.|++++|+|-+.+..
T Consensus 42 GIk~Va~D~DnTlI~~HsgG~~~~--------~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~ 113 (219)
T PTZ00445 42 GIKVIASDFDLTMITKHSGGYIDP--------DNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRY 113 (219)
T ss_pred CCeEEEecchhhhhhhhcccccCC--------CcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcce
Confidence 379999999999987555432100 000001122457889999999999999999999887633
Q ss_pred -----HHHHHHHhcCcc----ccccee------------eEecCCcHHH--H--HHHHHHhCCCCCcEEEEcCCcccccc
Q psy4436 86 -----RAHQLVDLFNWN----QHFDHK------------EIFPGQKTTH--F--ANLKKATGIEYKDMVFFDDEERNSHD 140 (171)
Q Consensus 86 -----~~~~~l~~~~l~----~~fd~~------------~~~~~~k~~~--~--~~~~~~~~~~~~~~l~vgD~~~di~~ 140 (171)
.+...++..+-. ..|.+. ....||.|+. | +++++++|++|++++||||+..||.+
T Consensus 114 Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVea 193 (219)
T PTZ00445 114 ISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKN 193 (219)
T ss_pred echHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHH
Confidence 455566644322 122111 1123777766 7 99999999999999999999999999
Q ss_pred cccCCceEEEeCC
Q psy4436 141 VSPLGVTCIHVKD 153 (171)
Q Consensus 141 a~~~G~~~i~v~~ 153 (171)
|+++|++++++.+
T Consensus 194 A~~lGi~ai~f~~ 206 (219)
T PTZ00445 194 ALKEGYIALHVTG 206 (219)
T ss_pred HHHCCCEEEEcCC
Confidence 9999999999975
No 78
>PLN02811 hydrolase
Probab=99.69 E-value=9.8e-17 Score=119.33 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=85.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee---e--E--ecCCcHHHHHHHHHHhC---C
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK---E--I--FPGQKTTHFANLKKATG---I 123 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~---~--~--~~~~k~~~~~~~~~~~~---~ 123 (171)
...++||+.++|+.|+++|++++|+||+.........++..++..+|+.+ + . ..||+|++|..++++++ +
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 45679999999999999999999999987622333334445677788765 2 2 24899999999999997 9
Q ss_pred CCCcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 124 EYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 124 ~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+|++|+||||+..|+.+|+++|+.++++.++..
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~ 188 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRL 188 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEEeCCCC
Confidence 999999999999999999999999999987654
No 79
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.69 E-value=1e-16 Score=119.90 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=91.5
Q ss_pred EEEEeCCCCCCCceeccccC-Cccee-------c-C--ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc---h
Q psy4436 18 LAVFDLDHTLWPFHVYIDVI-PPFKK-------I-G--DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT---E 83 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~-~~~~~-------~-~--~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~---~ 83 (171)
+|+||+|||++++..+...+ ..|.+ . . ............++||+.++|+.|+++|++++++||++ .
T Consensus 65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~ 144 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKT 144 (237)
T ss_pred EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCccc
Confidence 89999999999743322111 11111 0 1 11112223456789999999999999999999999964 2
Q ss_pred hHHHHHHHHhcCc--ccccceeeEe---cCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 84 MLRAHQLVDLFNW--NQHFDHKEIF---PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 84 ~~~~~~~l~~~~l--~~~fd~~~~~---~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
...+..+++.+++ ..+|+.+... .|+.+. ..++++++ ++||||+..|+.+|+++|+.++.+.+|++
T Consensus 145 ~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~---~~l~~~~i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 145 ETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKT---QWLKKKNI----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred HHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHH---HHHHhcCC----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 2466666667999 6777655222 234442 24455555 99999999999999999999999998775
No 80
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.68 E-value=4.8e-17 Score=120.96 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=74.0
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc--cc--cee-----eEecCCcHHH----------
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ--HF--DHK-----EIFPGQKTTH---------- 113 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~--~f--d~~-----~~~~~~k~~~---------- 113 (171)
....++||+.++|+.|+++|++++|+||+.. ..+...++++ +.. ++ +.. ....+|.|..
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~-~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 148 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMD-FFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCC 148 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcH-HHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCc
Confidence 4578999999999999999999999999988 7788889887 543 22 111 1122444322
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccccccccCCceEE
Q psy4436 114 FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
...++++++.++++++||||+..|+.+|+++|+.+.
T Consensus 149 K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 149 KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 357888899999999999999999999999999433
No 81
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.1e-16 Score=117.27 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=49.6
Q ss_pred cCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-cccccccCCceEEEeCCCCc-HHHHH
Q psy4436 107 PGQKTTHFANLKKATGIEYKDMVFFDDEER-NSHDVSPLGVTCIHVKDGMS-HSVLH 161 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~g~~-~~~~~ 161 (171)
.||.+.+|+.+++.++.+++++++|||+.. |+..|+++|+.+++|..|.+ .+++.
T Consensus 189 GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~ 245 (269)
T COG0647 189 GKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLD 245 (269)
T ss_pred CCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhh
Confidence 488899999999999999999999999999 99999999999999998876 44443
No 82
>KOG3109|consensus
Probab=99.67 E-value=2e-16 Score=114.31 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=84.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-----------ecCCcHHHHHHHHHHhC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-----------FPGQKTTHFANLKKATG 122 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-----------~~~~k~~~~~~~~~~~~ 122 (171)
.+++-+-.+.+|-.|+..+ .++.||... .-+...++++|+.+.|+.+.. +.||.+++|+.+++..|
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k-~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~ag 174 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYK-VHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG 174 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCcH-HHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence 3677778889998898775 889999988 666669999999999987722 23888999999999999
Q ss_pred CC-CCcEEEEcCCcccccccccCCceEEEeCC
Q psy4436 123 IE-YKDMVFFDDEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 123 ~~-~~~~l~vgD~~~di~~a~~~G~~~i~v~~ 153 (171)
++ |++++||+|+.+|+.+|++.|++++++..
T Consensus 175 i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 175 IDSPRNTYFFDDSERNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred CCCcCceEEEcCchhhHHHHHhccceeEEEEe
Confidence 98 99999999999999999999999999854
No 83
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.65 E-value=2.8e-16 Score=108.05 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=94.9
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHH--HHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVP--AILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
++|+++||+||||+|...+ ++..++.++.|. +. --|+.|.+.|++++|+|+... ..++...+
T Consensus 7 ~IkLli~DVDGvLTDG~ly--------------~~~~Gee~KaFn-v~DG~Gik~l~~~Gi~vAIITGr~s-~ive~Ra~ 70 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLY--------------YDENGEEIKAFN-VRDGHGIKLLLKSGIKVAIITGRDS-PIVEKRAK 70 (170)
T ss_pred hceEEEEeccceeecCeEE--------------EcCCCceeeeee-ccCcHHHHHHHHcCCeEEEEeCCCC-HHHHHHHH
Confidence 5899999999999986554 333444444433 22 258899999999999999987 77788999
Q ss_pred hcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 93 LFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 93 ~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
.+|+..+|..+ ..|...|+.+++++++.++++.|+||..+|+....++|..++..
T Consensus 71 ~LGI~~~~qG~----~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~ 125 (170)
T COG1778 71 DLGIKHLYQGI----SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVA 125 (170)
T ss_pred HcCCceeeech----HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccccc
Confidence 99999666544 44778899999999999999999999999999999999865543
No 84
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.65 E-value=2.8e-16 Score=115.41 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=73.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee---------eEecCCcHHHHHHHHHHhCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK---------EIFPGQKTTHFANLKKATGI 123 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~---------~~~~~~k~~~~~~~~~~~~~ 123 (171)
....++||+.++|+.|+++ ++++|+||+.. ..++..++++++..+|+.. .....++|.....++++++.
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFY-EFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcH-HHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 3567899999999999999 99999999988 7888899999998877532 01112233335566666777
Q ss_pred CCCcEEEEcCCcccccccccCCceE
Q psy4436 124 EYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 124 ~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
.+++++||||+.+|+.+++++|+..
T Consensus 143 ~~~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 143 LGYRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred hCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 7899999999999999999999744
No 85
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.63 E-value=1.2e-15 Score=125.34 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=90.0
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeee-eCCCHHHHHHHHhhCCcEEEEEcCCchh---------
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIK-YYRDVPAILKYLKQNNCLVAAASRTTEM--------- 84 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~L~~~g~~i~i~S~~~~~--------- 84 (171)
..|+++||+||||+...+... +-.....+. ++|++.+.|+.|+++|++++|+||.+..
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~~------------~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~ 234 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGKV------------FPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADD 234 (526)
T ss_pred cCcEEEEECCCCccccCCCcc------------CCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHH
Confidence 458999999999986432110 111122344 5899999999999999999999997551
Q ss_pred --HHHHHHHHhcCccccccee-----eEecCCcHHHHHHHHHHhC----CCCCcEEEEcCCcccccccccCCc
Q psy4436 85 --LRAHQLVDLFNWNQHFDHK-----EIFPGQKTTHFANLKKATG----IEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 85 --~~~~~~l~~~~l~~~fd~~-----~~~~~~k~~~~~~~~~~~~----~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
..+..+++.+++. |+.+ ..+.||++.++..++++++ +++++++||||+..|+.+++++|-
T Consensus 235 ~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 235 FKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 2356688888876 6644 2245999999999999985 899999999999999888777664
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.62 E-value=7e-15 Score=110.92 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=94.4
Q ss_pred cCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHH--HHH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAH--QLV 91 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~--~~l 91 (171)
..+++++||+||||++ ...++||+.++|++|+++|++++++||+++ .... ..+
T Consensus 6 ~~~~~~~~D~dG~l~~------------------------~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L 60 (242)
T TIGR01459 6 NDYDVFLLDLWGVIID------------------------GNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTL 60 (242)
T ss_pred hcCCEEEEeccccccc------------------------CCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHH
Confidence 3588999999999976 445699999999999999999999999877 4333 588
Q ss_pred HhcCccc-ccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc---------eEEEeCCC----CcH
Q psy4436 92 DLFNWNQ-HFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV---------TCIHVKDG----MSH 157 (171)
Q Consensus 92 ~~~~l~~-~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~---------~~i~v~~g----~~~ 157 (171)
+++++.. +|+.+.....-....+..++++++++++++++|||+..|+.....+|. ..+.+... ++.
T Consensus 61 ~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~ 140 (242)
T TIGR01459 61 KSLGINADLPEMIISSGEIAVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCYTTDDENKANASLITIYRSENEKLDL 140 (242)
T ss_pred HHCCCCccccceEEccHHHHHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCCccccCCcccCcEEEEcCCCcccCCH
Confidence 9999987 887763211111245667777888999999999999887766555443 22344322 556
Q ss_pred HHHHHHHHHh
Q psy4436 158 SVLHKGLKQW 167 (171)
Q Consensus 158 ~~~~~~~~~~ 167 (171)
..+.+.++.+
T Consensus 141 ~~~~~~l~~l 150 (242)
T TIGR01459 141 DEFDELFAPI 150 (242)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 87
>KOG2914|consensus
Probab=99.62 E-value=4.1e-16 Score=115.11 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=85.4
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC-cccccceeeE-------ecCCcHHHHHHHHHHhCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN-WNQHFDHKEI-------FPGQKTTHFANLKKATGIE 124 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~-l~~~fd~~~~-------~~~~k~~~~~~~~~~~~~~ 124 (171)
....+.||+.++++.|+.+|++++++|+++. ......+..++ +...|+.... .+||.|.+|..+++.++..
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~-~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~ 167 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTS-ASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVP 167 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCc-ccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCC
Confidence 4567899999999999999999999999977 66666777766 5555654411 2388999999999999999
Q ss_pred C-CcEEEEcCCcccccccccCCceEEEeCC
Q psy4436 125 Y-KDMVFFDDEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 125 ~-~~~l~vgD~~~di~~a~~~G~~~i~v~~ 153 (171)
| +.|++|+|+...+++|+++|++++.+++
T Consensus 168 ~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 168 PPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 9 9999999999999999999999999976
No 88
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.61 E-value=7.3e-16 Score=113.89 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=101.9
Q ss_pred cCCcEEEEeCCCCCCCceeccccCC-------------------------------cceecCceeeccCCCe-eeeCCCH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIP-------------------------------PFKKIGDKVLDAGGAI-IKYYRDV 61 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~v 61 (171)
.++++++|||||||++.++...+.. +++.......+..... ..+.|++
T Consensus 3 ~~~~L~vFD~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~~~l~~ga 82 (212)
T COG0560 3 RMKKLAVFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEFLRLTPGA 82 (212)
T ss_pred CccceEEEecccchhhHHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhcCcCCccH
Confidence 3578999999999999554432111 0111111111122234 7899999
Q ss_pred HHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----eE----------e-cCCcHHHHHHHHHHhCCCCC
Q psy4436 62 PAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----EI----------F-PGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----~~----------~-~~~k~~~~~~~~~~~~~~~~ 126 (171)
.++++.+++.|++++|+|++.. ..+..+.+.+|++..+... ++ + .+.|....+.+++++|++++
T Consensus 83 ~elv~~lk~~G~~v~iiSgg~~-~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~ 161 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFT-FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLE 161 (212)
T ss_pred HHHHHHHHHCCCEEEEEcCChH-HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999988 8889999999999766322 10 1 13467889999999999999
Q ss_pred cEEEEcCCcccccccccCCceEEEe
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
+++++||+.+|+.+.+.+|.....-
T Consensus 162 ~~~a~gDs~nDlpml~~ag~~ia~n 186 (212)
T COG0560 162 ETVAYGDSANDLPMLEAAGLPIAVN 186 (212)
T ss_pred HeEEEcCchhhHHHHHhCCCCeEeC
Confidence 9999999999999999999654443
No 89
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.59 E-value=8e-15 Score=103.85 Aligned_cols=114 Identities=21% Similarity=0.132 Sum_probs=87.7
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCc--EEEEEcCCc------hhHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNC--LVAAASRTT------EMLR 86 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~--~i~i~S~~~------~~~~ 86 (171)
-+|++|||+|+||+..+. .++.|.+.+.++++++.+. +++|+||+. ....
T Consensus 40 Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~ 97 (168)
T PF09419_consen 40 GIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER 97 (168)
T ss_pred CceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH
Confidence 489999999999976333 3457889999999999976 499999983 1255
Q ss_pred HHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCC-----CCCcEEEEcCCcc-cccccccCCceEEEeCCCC
Q psy4436 87 AHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGI-----EYKDMVFFDDEER-NSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 87 ~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~-----~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~g~ 155 (171)
++.+.+.+++.. |.+ ...|| ..+..+++.++. +|+++++|||+.. |+-.|...|+.++++++|.
T Consensus 98 a~~~~~~lgIpv-l~h--~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 98 AEALEKALGIPV-LRH--RAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HHHHHHhhCCcE-EEe--CCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 666777888661 111 12355 446677766654 5999999999999 9999999999999998875
No 90
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.59 E-value=1.6e-15 Score=108.80 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=74.7
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-e-------E-------e--cCCcHHHHH
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-E-------I-------F--PGQKTTHFA 115 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~-------~-------~--~~~k~~~~~ 115 (171)
....+.|++.++++.++++|++++|+|++.. ..++.+++.+++..+|... . . . ...|+..++
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFD-FFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcH-HHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 3456789999999999999999999999987 7888899999988766422 0 0 1 134667888
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccccC
Q psy4436 116 NLKKATGIEYKDMVFFDDEERNSHDVSPL 144 (171)
Q Consensus 116 ~~~~~~~~~~~~~l~vgD~~~di~~a~~~ 144 (171)
.+++++++++++++||||+.+|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88889999999999999999999988753
No 91
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.58 E-value=8.4e-16 Score=112.60 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=80.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce-eeE---------------ecCCcHHHHHHHHH
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH-KEI---------------FPGQKTTHFANLKK 119 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~-~~~---------------~~~~k~~~~~~~~~ 119 (171)
.++|++.++++.++++|++++|+|+++. ..++.+++.+++..+|.. ... ..++|...++.+++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~-~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLT-ILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 5799999999999999999999999988 788889999999887754 110 11446677899999
Q ss_pred HhCCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 120 ATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 120 ~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+.++++++++++||+..|+.+++.+|..++.-+
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 999999999999999999999999997665443
No 92
>KOG2882|consensus
Probab=99.57 E-value=3.7e-14 Score=107.32 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-cccccccCCceEEEeCCCC-cHHHHHHH
Q psy4436 107 PGQKTTHFANLKKATGIEYKDMVFFDDEER-NSHDVSPLGVTCIHVKDGM-SHSVLHKG 163 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~g~-~~~~~~~~ 163 (171)
.||.+.++..++++++++|++++||||+.+ |+..++++|++++++-.|. +.+++++.
T Consensus 223 GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~ 281 (306)
T KOG2882|consen 223 GKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEA 281 (306)
T ss_pred CCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhc
Confidence 378889999999999999999999999999 9999999999999996664 45555544
No 93
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.56 E-value=1e-14 Score=106.70 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=77.0
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE----ecCCcHHHHHHHHHHhCCCCCcEEEEc
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI----FPGQKTTHFANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~----~~~~k~~~~~~~~~~~~~~~~~~l~vg 132 (171)
+.+++.++|+.|+++|++++|+||++. ..+...++.+|+..+|+.+.. ..||+|+.|.+++++++++++++++||
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~-~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPR-KDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEe
Confidence 445569999999999999999999988 778889999999999987621 238999999999999999999999999
Q ss_pred CCcccccccccC
Q psy4436 133 DEERNSHDVSPL 144 (171)
Q Consensus 133 D~~~di~~a~~~ 144 (171)
|+.+|+.+|+++
T Consensus 186 D~~~Di~aA~~a 197 (197)
T TIGR01548 186 DTVDDIITGRKA 197 (197)
T ss_pred CCHHHHHHHHhC
Confidence 999999999864
No 94
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.56 E-value=4e-15 Score=110.26 Aligned_cols=92 Identities=4% Similarity=-0.020 Sum_probs=71.2
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc---ee-----eEecCCcHHHH----------H
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD---HK-----EIFPGQKTTHF----------A 115 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd---~~-----~~~~~~k~~~~----------~ 115 (171)
..+++||+.++++.|+++|++++|+|++.. ..+..+++.++....+- .. ....+|.+..+ .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~-~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMD-FFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcH-HHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 468999999999999999999999999977 77777888875433331 11 11224544333 3
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 116 NLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 116 ~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
.++++++..+++++||||+..|+.+|+++|+
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 6677777789999999999999999999998
No 95
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.54 E-value=4e-14 Score=106.46 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=44.3
Q ss_pred cCCcHHHHHHHHHHhCCCCCcE-EEEcCCc-ccccccccCCceEEEeCCC
Q psy4436 107 PGQKTTHFANLKKATGIEYKDM-VFFDDEE-RNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~~~~~~~~-l~vgD~~-~di~~a~~~G~~~i~v~~g 154 (171)
.||++.+|+.++++++++++++ +||||+. .|+.+|+++|+.+++|.+|
T Consensus 187 ~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 187 GKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred cCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 4888999999999999999887 9999999 6999999999999999765
No 96
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.54 E-value=5.6e-15 Score=104.58 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=79.3
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeC-CCHHHHHHHHhhCCcEEEEEcCCchh-----------
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYY-RDVPAILKYLKQNNCLVAAASRTTEM----------- 84 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~L~~~g~~i~i~S~~~~~----------- 84 (171)
|++.||+||||+....... +........++ |+|.+.|+.|++.||+|+|+||...-
T Consensus 1 Kia~fD~DgTLi~~~s~~~------------f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~ 68 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKK------------FPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLEN 68 (159)
T ss_dssp SEEEE-SCTTTEE-STSTT------------S-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHH
T ss_pred CEEEEeCCCCccCCCCCCc------------CcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHH
Confidence 6799999999976443321 11122345555 58999999999999999999995210
Q ss_pred --HHHHHHHHhcCccccccee---eEecCCcHHHHHHHHHHhCC----CCCcEEEEcCC-----------cccccccccC
Q psy4436 85 --LRAHQLVDLFNWNQHFDHK---EIFPGQKTTHFANLKKATGI----EYKDMVFFDDE-----------ERNSHDVSPL 144 (171)
Q Consensus 85 --~~~~~~l~~~~l~~~fd~~---~~~~~~k~~~~~~~~~~~~~----~~~~~l~vgD~-----------~~di~~a~~~ 144 (171)
.....+++.+++...+-.. ..++||++.+++.+++.++. +.++++||||. ..|..-|.++
T Consensus 69 ~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~ 148 (159)
T PF08645_consen 69 FHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNC 148 (159)
T ss_dssp HHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHc
Confidence 3344466667766322111 34679999999999998874 89999999996 4578888889
Q ss_pred CceE
Q psy4436 145 GVTC 148 (171)
Q Consensus 145 G~~~ 148 (171)
|+..
T Consensus 149 gi~f 152 (159)
T PF08645_consen 149 GIKF 152 (159)
T ss_dssp T--E
T ss_pred CCcc
Confidence 8864
No 97
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.52 E-value=1.5e-14 Score=106.32 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=71.7
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee---------eE---ecCCcHHHHHHHHHHh
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK---------EI---FPGQKTTHFANLKKAT 121 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~---------~~---~~~~k~~~~~~~~~~~ 121 (171)
...++||+.++|+.|++.| +++|+|++.. ..+..+++.+|+..+|... .+ ..++.+..+.+.+++.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~~-~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~ 143 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTFY-EFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSL 143 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCChH-HHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhh
Confidence 4578999999999999985 9999999988 7888899999999888521 11 1233333333333555
Q ss_pred CCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 122 GIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+ .++++|||+.+|+.+++.+|.......
T Consensus 144 ~---~~~v~vGDs~nDl~ml~~Ag~~ia~~a 171 (203)
T TIGR02137 144 Y---YRVIAAGDSYNDTTMLSEAHAGILFHA 171 (203)
T ss_pred C---CCEEEEeCCHHHHHHHHhCCCCEEecC
Confidence 4 389999999999999999998766654
No 98
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.51 E-value=1.7e-13 Score=102.16 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=82.7
Q ss_pred CeeeeCCCHHHHHHHH--hhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-------------ec--------CC
Q psy4436 53 AIIKYYRDVPAILKYL--KQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-------------FP--------GQ 109 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L--~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-------------~~--------~~ 109 (171)
..+++.||+.++++.+ +..|+.++|+|+++. -+...+|++.|+...|+.+.. .| .|
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs-~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~ 146 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANS-FFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCP 146 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcH-hHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCC
Confidence 4678999999999999 457999999999988 888999999999988755411 01 11
Q ss_pred ----cHHHHHHHHHH---hCCCCCcEEEEcCCcccccccccCCceEEE-eCCCCcHHH
Q psy4436 110 ----KTTHFANLKKA---TGIEYKDMVFFDDEERNSHDVSPLGVTCIH-VKDGMSHSV 159 (171)
Q Consensus 110 ----k~~~~~~~~~~---~~~~~~~~l~vgD~~~di~~a~~~G~~~i~-v~~g~~~~~ 159 (171)
|...++.+++. .|+..++++||||+.+|+.++.+++-.-+. .+.|+....
T Consensus 147 ~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~ 204 (234)
T PF06888_consen 147 PNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHK 204 (234)
T ss_pred CccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHH
Confidence 45666776665 478899999999999999999998875444 466776443
No 99
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.49 E-value=3.2e-13 Score=103.20 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
|+..++++++.++++++++++|||+.+|+.+++.+|+ ++.+.++
T Consensus 200 K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~-~vamgna 243 (272)
T PRK10530 200 KGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGL-GVAMGNA 243 (272)
T ss_pred hHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCc-eEEecCc
Confidence 4566788889999999999999999999999999996 4445443
No 100
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.49 E-value=3e-13 Score=100.99 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=86.5
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|+|+||+||||++.. ..+.|...++|++|+++|++++++|+++. ..+...++.++
T Consensus 3 ~kli~~DlDGTLl~~~-----------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~~-~~~~~~~~~l~ 58 (230)
T PRK01158 3 IKAIAIDIDGTITDKD-----------------------RRLSLKAVEAIRKAEKLGIPVILATGNVL-CFARAAAKLIG 58 (230)
T ss_pred eeEEEEecCCCcCCCC-----------------------CccCHHHHHHHHHHHHCCCEEEEEcCCch-HHHHHHHHHhC
Confidence 6899999999997621 13457788999999999999999999987 55565677776
Q ss_pred ccc------------------------------------c----------------------------------------
Q psy4436 96 WNQ------------------------------------H---------------------------------------- 99 (171)
Q Consensus 96 l~~------------------------------------~---------------------------------------- 99 (171)
+.. .
T Consensus 59 ~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (230)
T PRK01158 59 TSGPVIAENGGVISVGFDGKRIFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGL 138 (230)
T ss_pred CCCcEEEecCeEEEEcCCCCEEEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCC
Confidence 653 0
Q ss_pred -cce------eeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 100 -FDH------KEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 100 -fd~------~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
+.. .+..+ .+|+..++++++.++++++++++|||+.+|+.+++.+|.. +++.++
T Consensus 139 ~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~-vam~Na 201 (230)
T PRK01158 139 DLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFG-VAVANA 201 (230)
T ss_pred cEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCce-EEecCc
Confidence 000 01111 2467889999999999999999999999999999999975 445443
No 101
>KOG4549|consensus
Probab=99.48 E-value=5.8e-13 Score=88.27 Aligned_cols=127 Identities=31% Similarity=0.407 Sum_probs=107.1
Q ss_pred cccCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHH
Q psy4436 12 VKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLV 91 (171)
Q Consensus 12 ~~~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l 91 (171)
|...|+++.||+|=|||+-+++.++.-||.+...... ..+..+..|++....|..|+++|+.++++|+++.++.+.+.|
T Consensus 1 M~~~p~~~~fdldytiwP~~vdthl~~pfkP~k~~~g-~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L 79 (144)
T KOG4549|consen 1 MAEKPEAMQFDLDYTIWPRLVDTHLDYPFKPFKCECG-SKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL 79 (144)
T ss_pred CCCCCceeEEeccceeeeEEEEecccccccccccCcc-cCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH
Confidence 3446899999999999999999999988888762221 566788999999999999999999999999999999999999
Q ss_pred HhcCcccc---------cceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCccccc
Q psy4436 92 DLFNWNQH---------FDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSH 139 (171)
Q Consensus 92 ~~~~l~~~---------fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~ 139 (171)
+.+....- |+++...+..+..+|..+-+..+....+..+++|..++-.
T Consensus 80 ~~fkvk~~Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~~k~~~~fdDesrnke 136 (144)
T KOG4549|consen 80 ETFKVKQTGVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSIEKNKQVFDDESRNKE 136 (144)
T ss_pred HHhccCcccccchhhhcCceeeecCcccchhHHHHhhccCcchhceeeecccccCCc
Confidence 99887753 3444445577888999999999999999999999888743
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.45 E-value=5.6e-13 Score=98.74 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=87.6
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|+|+||+||||++. ...+.|...++|++|++.|++++++|+++. .......+.++
T Consensus 1 ik~v~~DlDGTLl~~-----------------------~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~-~~~~~~~~~l~ 56 (215)
T TIGR01487 1 IKLVAIDIDGTLTEP-----------------------NRMISERAIEAIRKAEKKGIPVSLVTGNTV-PFARALAVLIG 56 (215)
T ss_pred CcEEEEecCCCcCCC-----------------------CcccCHHHHHHHHHHHHCCCEEEEEcCCcc-hhHHHHHHHhC
Confidence 478999999999752 123567889999999999999999999987 66666777777
Q ss_pred ccc-------------------------------------------------------------------------ccc-
Q psy4436 96 WNQ-------------------------------------------------------------------------HFD- 101 (171)
Q Consensus 96 l~~-------------------------------------------------------------------------~fd- 101 (171)
+.. ++.
T Consensus 57 ~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (215)
T TIGR01487 57 TSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSG 136 (215)
T ss_pred CCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecC
Confidence 763 000
Q ss_pred -eeeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 102 -HKEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 102 -~~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
..+..+ ..|...++++++.++++++++++|||+.+|+.+++.+|+. +.+.++
T Consensus 137 ~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~-vam~na 191 (215)
T TIGR01487 137 FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK-VAVANA 191 (215)
T ss_pred ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe-EEcCCc
Confidence 001111 3467889999999999999999999999999999999965 444444
No 103
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.45 E-value=5.7e-13 Score=94.66 Aligned_cols=142 Identities=14% Similarity=0.071 Sum_probs=100.9
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceee----c--cCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHH
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVL----D--AGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQL 90 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~ 90 (171)
+.+|+|||+||+........ ...+... . ...-.+...||+.++|+.|.+. +.++|.|+++. ..++.+
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~-~yA~~i 74 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPK-----VDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLE-EYADPV 74 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCC-----CCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcH-HHHHHH
Confidence 47999999999875332210 0001100 0 1112456789999999999988 99999999988 888999
Q ss_pred HHhcCccc-cccee---eEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCcHH---HHH
Q psy4436 91 VDLFNWNQ-HFDHK---EIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHS---VLH 161 (171)
Q Consensus 91 l~~~~l~~-~fd~~---~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~---~~~ 161 (171)
++.++... +|+.. +.+. +++ +.+.++.++.+++++++|||++.++..+.++|+.+..+.....-. .+.
T Consensus 75 l~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~ 151 (162)
T TIGR02251 75 LDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLI 151 (162)
T ss_pred HHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHH
Confidence 99999775 77655 1111 333 677788899999999999999999999999999877776544333 334
Q ss_pred HHHHHhh
Q psy4436 162 KGLKQWA 168 (171)
Q Consensus 162 ~~~~~~~ 168 (171)
..|+..+
T Consensus 152 ~~L~~l~ 158 (162)
T TIGR02251 152 PFLEGLR 158 (162)
T ss_pred HHHHHHh
Confidence 4555544
No 104
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.42 E-value=1.3e-12 Score=100.00 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=48.3
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
|+|+++||+||||++. ...+.+...++|++|+++|++++++|+++. ..+...++.+
T Consensus 1 m~kli~~DlDGTLl~~-----------------------~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~-~~~~~~~~~l 56 (272)
T PRK15126 1 MARLAAFDMDGTLLMP-----------------------DHHLGEKTLSTLARLRERDITLTFATGRHV-LEMQHILGAL 56 (272)
T ss_pred CccEEEEeCCCcCcCC-----------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHHHc
Confidence 3789999999999762 113467788999999999999999999988 5666688887
Q ss_pred Cccc
Q psy4436 95 NWNQ 98 (171)
Q Consensus 95 ~l~~ 98 (171)
++..
T Consensus 57 ~~~~ 60 (272)
T PRK15126 57 SLDA 60 (272)
T ss_pred CCCC
Confidence 7653
No 105
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.41 E-value=8.7e-13 Score=100.29 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCcEEEEeCCCCCCCceecc----ccCCcceecC-ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYI----DVIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRA 87 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~ 87 (171)
.|.+||||+|+|+++...+. .-+.+|.+.. +..... ....++||+.++|+.|+++|++++++||+... ...
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~--~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQA--AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHc--CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 47899999999999765441 1123443333 222222 35568999999999999999999999998631 334
Q ss_pred HHHHHhcCccccc-ceeeE--ecCCcHHHHHHHHHHhCCCCCcEEEEcCCccccccc
Q psy4436 88 HQLVDLFNWNQHF-DHKEI--FPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDV 141 (171)
Q Consensus 88 ~~~l~~~~l~~~f-d~~~~--~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a 141 (171)
...++++|+..++ +.+.. ...+|+...+.+.+.+++ +++|||+..|+..+
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I----vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI----VLLFGDNLLDFDDF 204 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE----EEEECCCHHHhhhh
Confidence 4688889998644 34321 125677778888776666 99999999998553
No 106
>KOG3040|consensus
Probab=99.40 E-value=3.4e-12 Score=91.96 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=92.5
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHHHHHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRAHQLVD 92 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~ 92 (171)
.++.+.+|+-|||.. +....|++.+++++|+.++.++=.+||.... ......|.
T Consensus 6 ~v~gvLlDlSGtLh~------------------------e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~ 61 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHI------------------------EDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQ 61 (262)
T ss_pred ccceEEEeccceEec------------------------ccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHH
Confidence 478899999999944 2236899999999999999999999997552 23334566
Q ss_pred hcCccc--------------------------------------------------------------------------
Q psy4436 93 LFNWNQ-------------------------------------------------------------------------- 98 (171)
Q Consensus 93 ~~~l~~-------------------------------------------------------------------------- 98 (171)
++|+.-
T Consensus 62 rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~ 141 (262)
T KOG3040|consen 62 RLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPL 141 (262)
T ss_pred HhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCe
Confidence 666654
Q ss_pred --------ccc--------------------ee--eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-cccccccCCce
Q psy4436 99 --------HFD--------------------HK--EIFPGQKTTHFANLKKATGIEYKDMVFFDDEER-NSHDVSPLGVT 147 (171)
Q Consensus 99 --------~fd--------------------~~--~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~~G~~ 147 (171)
||. .. ....||.+.+|+.+++.+|++|++++||||..+ |+..|+++||.
T Consensus 142 LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMr 221 (262)
T KOG3040|consen 142 LIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMR 221 (262)
T ss_pred EEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcce
Confidence 220 00 223489999999999999999999999999999 89999999999
Q ss_pred EEEeCCC
Q psy4436 148 CIHVKDG 154 (171)
Q Consensus 148 ~i~v~~g 154 (171)
.++|+.|
T Consensus 222 gilVkTG 228 (262)
T KOG3040|consen 222 GILVKTG 228 (262)
T ss_pred eEEeecc
Confidence 9999764
No 107
>PRK10976 putative hydrolase; Provisional
Probab=99.40 E-value=2.6e-12 Score=97.98 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
|...++++++.+|+++++++.|||+.+|+.+.+.+|. ++++.++.
T Consensus 191 Kg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~-~vAm~NA~ 235 (266)
T PRK10976 191 KGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGK-GCIMGNAH 235 (266)
T ss_pred hHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCC-CeeecCCc
Confidence 5677888889999999999999999999999999996 55665543
No 108
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.40 E-value=3.1e-12 Score=97.57 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
++|+|+||+||||++.. ....+...++|++++++|++++++|+++. ..+...++.+
T Consensus 2 ~~kli~~DlDGTLl~~~-----------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~~-~~~~~~~~~l 57 (264)
T COG0561 2 MIKLLAFDLDGTLLDSN-----------------------KTISPETKEALARLREKGVKVVLATGRPL-PDVLSILEEL 57 (264)
T ss_pred CeeEEEEcCCCCccCCC-----------------------CccCHHHHHHHHHHHHCCCEEEEECCCCh-HHHHHHHHHc
Confidence 47899999999997622 22578899999999999999999999988 7788899998
Q ss_pred Cccc
Q psy4436 95 NWNQ 98 (171)
Q Consensus 95 ~l~~ 98 (171)
++..
T Consensus 58 ~~~~ 61 (264)
T COG0561 58 GLDG 61 (264)
T ss_pred CCCc
Confidence 8874
No 109
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.38 E-value=3.4e-12 Score=94.91 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=83.6
Q ss_pred EEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 19 AVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 19 vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
|+||+||||++... .+.+...++|++|++.|++++++|+++. ......++.+++..
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~-~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSV-QFARALAKLIGTPD 56 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCch-HHHHHHHHHhCCCC
Confidence 58999999986321 2456778899999999999999999877 55565666666432
Q ss_pred ----------------------------------------------------------------------cc--------
Q psy4436 99 ----------------------------------------------------------------------HF-------- 100 (171)
Q Consensus 99 ----------------------------------------------------------------------~f-------- 100 (171)
.+
T Consensus 57 ~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (225)
T TIGR01482 57 PVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVD 136 (225)
T ss_pred eEEEecCcEEEeCCCCceEEecccCHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEec
Confidence 00
Q ss_pred --ceeeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 101 --DHKEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 101 --d~~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
...+..+ .+|...+++++++++++++++++|||+.+|+.+++.+|.. +.+.++
T Consensus 137 ~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~-vam~Na 193 (225)
T TIGR01482 137 SGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFG-VAVANA 193 (225)
T ss_pred CCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCce-EEcCCh
Confidence 0011222 3567889999999999999999999999999999999974 556554
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.36 E-value=7.3e-12 Score=95.72 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|+|+||+||||++.. ..+.+...++|++|+++|++++++|+++. ..+...++.++
T Consensus 3 ~kli~~DlDGTLl~~~-----------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~~-~~~~~~~~~l~ 58 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD-----------------------HTISPAVKQAIAAARAKGVNVVLTTGRPY-AGVHRYLKELH 58 (270)
T ss_pred eEEEEEecCCcCcCCC-----------------------CccCHHHHHHHHHHHHCCCEEEEecCCCh-HHHHHHHHHhC
Confidence 7899999999997621 13456788999999999999999999988 55666777777
Q ss_pred c
Q psy4436 96 W 96 (171)
Q Consensus 96 l 96 (171)
+
T Consensus 59 ~ 59 (270)
T PRK10513 59 M 59 (270)
T ss_pred C
Confidence 5
No 111
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.34 E-value=3.8e-12 Score=93.55 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=77.3
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc--ccceeeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ--HFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~--~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
..++.|++.++|+.|++.|++++++|+.+. ..+....+.+|+.. +|.... ++|.+.+|..+++++++++++++||
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~-~~a~~~~~~lgi~~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNE-STASAIAKQLGIFDSIVFARVI--GKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEH-HHHHHHHHHTTSCSEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccc-cccccccccccccccccccccc--ccccchhHHHHHHHHhcCCCEEEEE
Confidence 457899999999999999999999998877 88888999999965 332222 5787788999999999999999999
Q ss_pred cCCcccccccccCC
Q psy4436 132 DDEERNSHDVSPLG 145 (171)
Q Consensus 132 gD~~~di~~a~~~G 145 (171)
||+.+|+.+++++|
T Consensus 202 GDg~nD~~al~~Ag 215 (215)
T PF00702_consen 202 GDGVNDAPALKAAG 215 (215)
T ss_dssp ESSGGHHHHHHHSS
T ss_pred ccCHHHHHHHHhCc
Confidence 99999999999887
No 112
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.33 E-value=1.2e-11 Score=93.70 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=87.6
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+|+.||||||++++.. .....|.+.+++++++++|++++++|+++. ...+.+++.+++.
T Consensus 3 li~tDlDGTLl~~~~~--------------------~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~-~~~~~~~~~~~~~ 61 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDG--------------------DNQALLRLNALLEDHRGEDSLLVYSTGRSP-HSYKELQKQKPLL 61 (249)
T ss_pred EEEEcCCCcCcCCCCC--------------------ChHHHHHHHHHHHHhhccCceEEEEcCCCH-HHHHHHHhcCCCC
Confidence 5677999999874422 123357788899999999999999999877 5566566655543
Q ss_pred c-------------------------------------------------------------c-----------------
Q psy4436 98 Q-------------------------------------------------------------H----------------- 99 (171)
Q Consensus 98 ~-------------------------------------------------------------~----------------- 99 (171)
. +
T Consensus 62 ~p~~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~ 141 (249)
T TIGR01485 62 TPDIWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEM 141 (249)
T ss_pred CCCEEEEcCCceEEeCCCCcCCHHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHH
Confidence 2 0
Q ss_pred -------c-------ceeeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 100 -------F-------DHKEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 100 -------f-------d~~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
+ ..++..+ .+|...++++++.++++++++++|||+.+|+.+++.+|..++++.++.
T Consensus 142 l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~ 213 (249)
T TIGR01485 142 LKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQ 213 (249)
T ss_pred HHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCH
Confidence 0 0002222 567888999999999999999999999999999999888888887654
No 113
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.32 E-value=1.4e-11 Score=94.59 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
++|+|++|+||||++.. ....+.+.++|+.|+++|++++++|+++. ..+...++.+
T Consensus 3 ~~kli~~DlDGTLl~~~-----------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~-~~~~~~~~~l 58 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHH-----------------------TYSYEPAKPALKALKEKGIPVIPCTSKTA-AEVEVLRKEL 58 (273)
T ss_pred cceEEEEcCcccCcCCC-----------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHc
Confidence 47899999999997621 12356788999999999999999999877 5566677777
Q ss_pred Cccc
Q psy4436 95 NWNQ 98 (171)
Q Consensus 95 ~l~~ 98 (171)
++..
T Consensus 59 ~l~~ 62 (273)
T PRK00192 59 GLED 62 (273)
T ss_pred CCCC
Confidence 7654
No 114
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.31 E-value=1.8e-11 Score=91.61 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=88.9
Q ss_pred EEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 19 AVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 19 vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
|++|+||||++. ...+.|...++|++|+++|++++++|+++. ..+...+..+++..
T Consensus 1 i~~DlDGTLl~~-----------------------~~~i~~~~~~al~~l~~~g~~~~i~TGR~~-~~~~~~~~~~~~~~ 56 (254)
T PF08282_consen 1 IFSDLDGTLLNS-----------------------DGKISPETIEALKELQEKGIKLVIATGRSY-SSIKRLLKELGIDD 56 (254)
T ss_dssp EEEECCTTTCST-----------------------TSSSCHHHHHHHHHHHHTTCEEEEECSSTH-HHHHHHHHHTTHCS
T ss_pred cEEEECCceecC-----------------------CCeeCHHHHHHHHhhcccceEEEEEccCcc-cccccccccccchh
Confidence 689999999762 223568899999999999999999999988 77788999888773
Q ss_pred --------------------------------------------------------------------------------
Q psy4436 99 -------------------------------------------------------------------------------- 98 (171)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (171)
T Consensus 57 ~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (254)
T PF08282_consen 57 YFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDL 136 (254)
T ss_dssp EEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHH
T ss_pred hhcccccceeeecccccchhhheeccchhheeehhhhcccccccccceeeecccccccchhhhhhccccccccccccccc
Confidence
Q ss_pred --------------------------cc----ce-------eeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCccccc
Q psy4436 99 --------------------------HF----DH-------KEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSH 139 (171)
Q Consensus 99 --------------------------~f----d~-------~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~ 139 (171)
.| .. .+..+ -.|....+++++.++++++++++|||+.+|+.
T Consensus 137 ~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~ 216 (254)
T PF08282_consen 137 EDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIE 216 (254)
T ss_dssp HCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHH
T ss_pred ccccceeeeccccchhhhhhhhhhccccCcceeEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHh
Confidence 11 11 12223 45788899999999999999999999999999
Q ss_pred ccccCCceEEEeCCCC
Q psy4436 140 DVSPLGVTCIHVKDGM 155 (171)
Q Consensus 140 ~a~~~G~~~i~v~~g~ 155 (171)
+.+.+|. ++.+.++.
T Consensus 217 Ml~~~~~-~~am~na~ 231 (254)
T PF08282_consen 217 MLELAGY-SVAMGNAT 231 (254)
T ss_dssp HHHHSSE-EEEETTS-
T ss_pred HHhhcCe-EEEEcCCC
Confidence 9999985 46665544
No 115
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.30 E-value=8.9e-12 Score=95.02 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=76.7
Q ss_pred cCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeee-CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKY-YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
..+++|+||+||||++.+- ...+ .|++.++|++|+++|++++|+|+++. ..+...++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~R-e~v~~~L~ 181 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDR-DHVVESMR 181 (301)
T ss_pred ccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCH-HHHHHHHH
Confidence 4589999999999987322 2222 49999999999999999999999988 66667999
Q ss_pred hcCcccccceeeEe-----cC-----------------------------Cc-HHHHHHHHHHhCCCCCc-EEEEcCCcc
Q psy4436 93 LFNWNQHFDHKEIF-----PG-----------------------------QK-TTHFANLKKATGIEYKD-MVFFDDEER 136 (171)
Q Consensus 93 ~~~l~~~fd~~~~~-----~~-----------------------------~k-~~~~~~~~~~~~~~~~~-~l~vgD~~~ 136 (171)
.+|+..+|+.+... .+ || |....+.+++.|++.-. +..|||-..
T Consensus 182 ~lGLd~YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~~ 261 (301)
T TIGR01684 182 KVKLDRYFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLAD 261 (301)
T ss_pred HcCCCcccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCcc
Confidence 99999988655110 01 12 35578888889988554 566887766
Q ss_pred c
Q psy4436 137 N 137 (171)
Q Consensus 137 d 137 (171)
|
T Consensus 262 N 262 (301)
T TIGR01684 262 N 262 (301)
T ss_pred c
Confidence 3
No 116
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.29 E-value=2.6e-11 Score=92.01 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCC
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~ 153 (171)
|...++.+++.++++++++++|||+.+|+.+++.+|+. +.+.+
T Consensus 189 K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~-~a~~n 231 (256)
T TIGR00099 189 KGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYG-VAMGN 231 (256)
T ss_pred hHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCce-eEecC
Confidence 56778999999999999999999999999999999975 44433
No 117
>PRK08238 hypothetical protein; Validated
Probab=99.29 E-value=8.1e-12 Score=102.37 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=72.3
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE-------ecCCcHHHHHHHHHHhCCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI-------FPGQKTTHFANLKKATGIEY 125 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~-------~~~~k~~~~~~~~~~~~~~~ 125 (171)
...++.|++.+.+++++++|++++++|++++ ..++..++++|+ |+.+.. .+++|++. +.+.++ .
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTas~~-~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~~---l~~~l~--~ 139 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATASDE-RLAQAVAAHLGL---FDGVFASDGTTNLKGAAKAAA---LVEAFG--E 139 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHcCC---CCEEEeCCCccccCCchHHHH---HHHHhC--c
Confidence 3456789999999999999999999999988 788888999987 555411 12334433 334454 3
Q ss_pred CcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 126 KDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 126 ~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+++.|+||+..|+.+++.+| +.+.|+.+..
T Consensus 140 ~~~~yvGDS~~Dlp~~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 140 RGFDYAGNSAADLPVWAAAR-RAIVVGASPG 169 (479)
T ss_pred cCeeEecCCHHHHHHHHhCC-CeEEECCCHH
Confidence 66899999999999999999 7788865543
No 118
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.28 E-value=5.6e-12 Score=89.03 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=79.2
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh---cCccccccee-e--EecCCcHHHHHHHHHHhCCCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL---FNWNQHFDHK-E--IFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~---~~l~~~fd~~-~--~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
-.-.+||++.+.|+++++.|++++|.|+++. ...+.+..+ -++..+|+.. + +.+|....-|.++++..|++|.
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV-~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSV-KAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCc-hhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCch
Confidence 3457899999999999999999999999877 433433332 3455566544 2 3345556779999999999999
Q ss_pred cEEEEcCCcccccccccCCceEEEeC
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+++|+.|.+..+.+|+.+|+++.++.
T Consensus 179 eilFLSDn~~EL~AA~~vGl~t~l~~ 204 (229)
T COG4229 179 EILFLSDNPEELKAAAGVGLATGLAV 204 (229)
T ss_pred heEEecCCHHHHHHHHhcchheeeee
Confidence 99999999999999999999988883
No 119
>KOG1615|consensus
Probab=99.26 E-value=1.5e-11 Score=87.70 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=92.4
Q ss_pred cCCcEEEEeCCCCCCCceeccccC--------------------Cccee-----------cCcee-eccCCCeeeeCCCH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVI--------------------PPFKK-----------IGDKV-LDAGGAIIKYYRDV 61 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~--------------------~~~~~-----------~~~~~-~~~~~~~~~~~~~v 61 (171)
...++|+||+|-|++..+....+. .+|+. ...++ ........++.||+
T Consensus 14 ~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi 93 (227)
T KOG1615|consen 14 RSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGI 93 (227)
T ss_pred HhcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCH
Confidence 457899999999998765543221 12321 11111 12223467889999
Q ss_pred HHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc--c------ccee---eEe----c----CCcHHHHHHHHHHhC
Q psy4436 62 PAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ--H------FDHK---EIF----P----GQKTTHFANLKKATG 122 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~--~------fd~~---~~~----~----~~k~~~~~~~~~~~~ 122 (171)
+++.+.|+++|.+++++|++.. ..+......+|++. . |+.. .++ | .-|++.+..+.+ +
T Consensus 94 ~eLv~~L~~~~~~v~liSGGF~-~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk--~ 170 (227)
T KOG1615|consen 94 RELVSRLHARGTQVYLISGGFR-QLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK--N 170 (227)
T ss_pred HHHHHHHHHcCCeEEEEcCChH-HHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHh--C
Confidence 9999999999999999999977 77887888899886 1 1111 111 1 335666777665 8
Q ss_pred CCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 123 IEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 123 ~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
.+.+.+++|||+.+|+.+..- |..++..
T Consensus 171 ~~~~~~~mvGDGatDlea~~p-a~afi~~ 198 (227)
T KOG1615|consen 171 YNYKTIVMVGDGATDLEAMPP-ADAFIGF 198 (227)
T ss_pred CChheeEEecCCccccccCCc-hhhhhcc
Confidence 899999999999999888666 4444443
No 120
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.21 E-value=1.4e-10 Score=86.23 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEE
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
|+..++++++.+|++++++++|||+.+|+.+.+.+|....
T Consensus 180 Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 180 KGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred HHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 4566788888999999999999999999999999996543
No 121
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.20 E-value=1.4e-10 Score=76.00 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=60.1
Q ss_pred EEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHHHHHHHhcCc
Q psy4436 19 AVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRAHQLVDLFNW 96 (171)
Q Consensus 19 vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~~~~l 96 (171)
++||+|||||. ...++||+.++|+.|+++|++++++||++.. ......++.+|+
T Consensus 1 ~l~D~dGvl~~------------------------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi 56 (101)
T PF13344_consen 1 FLFDLDGVLYN------------------------GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGI 56 (101)
T ss_dssp EEEESTTTSEE------------------------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTT
T ss_pred CEEeCccEeEe------------------------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCc
Confidence 68999999976 4467999999999999999999999998632 233446677887
Q ss_pred ccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCC
Q psy4436 97 NQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLG 145 (171)
Q Consensus 97 ~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G 145 (171)
..--+.+ +. ........+++. .....++++|-. ......+++|
T Consensus 57 ~~~~~~i--~t--s~~~~~~~l~~~-~~~~~v~vlG~~-~l~~~l~~~G 99 (101)
T PF13344_consen 57 PVDEDEI--IT--SGMAAAEYLKEH-KGGKKVYVLGSD-GLREELREAG 99 (101)
T ss_dssp T--GGGE--EE--HHHHHHHHHHHH-TTSSEEEEES-H-HHHHHHHHTT
T ss_pred CCCcCEE--EC--hHHHHHHHHHhc-CCCCEEEEEcCH-HHHHHHHHcC
Confidence 7322222 22 123344444443 335667777754 3333444444
No 122
>PLN02887 hydrolase family protein
Probab=99.20 E-value=1.6e-10 Score=96.51 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
++|+|+||+||||++. ...+.+...++|++|+++|++++++|+++. ..+...++.+
T Consensus 307 ~iKLIa~DLDGTLLn~-----------------------d~~Is~~t~eAI~kl~ekGi~~vIATGR~~-~~i~~~l~~L 362 (580)
T PLN02887 307 KFSYIFCDMDGTLLNS-----------------------KSQISETNAKALKEALSRGVKVVIATGKAR-PAVIDILKMV 362 (580)
T ss_pred CccEEEEeCCCCCCCC-----------------------CCccCHHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHh
Confidence 5799999999999762 123466788999999999999999999987 5555566665
Q ss_pred Cc
Q psy4436 95 NW 96 (171)
Q Consensus 95 ~l 96 (171)
++
T Consensus 363 ~l 364 (580)
T PLN02887 363 DL 364 (580)
T ss_pred Cc
Confidence 43
No 123
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=1.4e-10 Score=92.89 Aligned_cols=128 Identities=23% Similarity=0.232 Sum_probs=93.9
Q ss_pred ccccCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHH
Q psy4436 11 SVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQL 90 (171)
Q Consensus 11 ~~~~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~ 90 (171)
.+....|++|+|||+|||..-+...... .+.-.....-++|....+.+..|+++|+-++|+|-+.. .-++..
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGedGv~-------GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~-~da~ev 288 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGEDGVD-------GIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTE-KDAKEV 288 (574)
T ss_pred hhCcccceEEEecCCccccccccccccc-------ceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCch-hhHHHH
Confidence 4445679999999999998666543211 11111112335567788999999999999999998877 555556
Q ss_pred HHhcC-cc---cccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 91 VDLFN-WN---QHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 91 l~~~~-l~---~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
..+.. +. ..|+...+.-.||.+.++++++++|+..+..+|+||++...+-.++.+-
T Consensus 289 F~khp~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 289 FRKHPDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred HhhCCCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCc
Confidence 55542 11 2344444555899999999999999999999999999999988888774
No 124
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.20 E-value=6e-11 Score=90.59 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=77.6
Q ss_pred cCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeee-CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKY-YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
..+++|+||+||||+..+- ...+ .|++.++|++|+++|++++|+||++. ..+...++
T Consensus 126 ~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~R-e~v~~~Le 183 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNR-EHVVHSLK 183 (303)
T ss_pred eeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCCh-HHHHHHHH
Confidence 4689999999999976322 2222 49999999999999999999999977 66777999
Q ss_pred hcCcccccceeeEe----------------------------------cCCc-HHHHHHHHHHhCCCCC-cEEEEcCCcc
Q psy4436 93 LFNWNQHFDHKEIF----------------------------------PGQK-TTHFANLKKATGIEYK-DMVFFDDEER 136 (171)
Q Consensus 93 ~~~l~~~fd~~~~~----------------------------------~~~k-~~~~~~~~~~~~~~~~-~~l~vgD~~~ 136 (171)
.+++..+|+.+... .-|| |....+.+++.|++.- -+..|||-..
T Consensus 184 ~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~ 263 (303)
T PHA03398 184 ETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKS 263 (303)
T ss_pred HcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCcc
Confidence 99999988644110 0122 4568889999999865 4667888776
Q ss_pred c
Q psy4436 137 N 137 (171)
Q Consensus 137 d 137 (171)
|
T Consensus 264 N 264 (303)
T PHA03398 264 N 264 (303)
T ss_pred c
Confidence 4
No 125
>KOG3120|consensus
Probab=99.18 E-value=7.6e-11 Score=85.72 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=76.7
Q ss_pred CeeeeCCCHHHHHHHHhhCCc-EEEEEcCCchhHHHHHHHHhcCcccccceeeEe-------------c---------CC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNC-LVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF-------------P---------GQ 109 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~-~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~-------------~---------~~ 109 (171)
..++..||+.++++.+++.|. .++|+|..+. -+...+++++++.+.|+.+..- | .|
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNs-fFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CP 159 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANS-FFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCP 159 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCch-hHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCc
Confidence 467889999999999999985 9999998877 7888899999999988544110 1 11
Q ss_pred ----cHHHHHHHH---HHhCCCCCcEEEEcCCcccccccccCCceEEEe-CCCCcHH
Q psy4436 110 ----KTTHFANLK---KATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV-KDGMSHS 158 (171)
Q Consensus 110 ----k~~~~~~~~---~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v-~~g~~~~ 158 (171)
|...+.++. -+-|+++++++||||+-+|+.+...+--.-+.+ +.|+...
T Consensus 160 sNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~ 216 (256)
T KOG3120|consen 160 SNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLW 216 (256)
T ss_pred hhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchH
Confidence 222233332 345889999999999999988887765544444 5566543
No 126
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.18 E-value=2.5e-10 Score=89.56 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred cCCcHHHHHHHHHHh--------CC-----CCCcEEEEcCCc-ccccccccCCceEEEeCCC
Q psy4436 107 PGQKTTHFANLKKAT--------GI-----EYKDMVFFDDEE-RNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 107 ~~~k~~~~~~~~~~~--------~~-----~~~~~l~vgD~~-~di~~a~~~G~~~i~v~~g 154 (171)
.||.+.+|+.+++.+ ++ ++++++||||+. .|+..|+++|+.+++|..|
T Consensus 232 GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG 293 (321)
T TIGR01456 232 GKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTG 293 (321)
T ss_pred CCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEeccc
Confidence 477788888877776 33 457999999999 5999999999999999877
No 127
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.17 E-value=2e-10 Score=90.11 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=82.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc-C-------cccccceeeEe-cCC---------------
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF-N-------WNQHFDHKEIF-PGQ--------------- 109 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~-~-------l~~~fd~~~~~-~~~--------------- 109 (171)
.+...|++.++|+.|+++|++++|+||++. ..+...++.+ + +..+|+.+... .||
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~-~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDY-DYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCH-HHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 356699999999999999999999999988 8888899996 6 78888866221 122
Q ss_pred -------------cH-----HHHHHHHHHhCCCCCcEEEEcCCcc-cccccc-cCCceEEEeCCCC
Q psy4436 110 -------------KT-----THFANLKKATGIEYKDMVFFDDEER-NSHDVS-PLGVTCIHVKDGM 155 (171)
Q Consensus 110 -------------k~-----~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~-~~G~~~i~v~~g~ 155 (171)
+. .....+.+.+++++++++||||+.. |+..++ .+||.++++....
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pEL 326 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPEL 326 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchhH
Confidence 00 2357778889999999999999999 999998 8999999997644
No 128
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.16 E-value=3.5e-10 Score=86.72 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHhCC---CCCcEEEEcCCcccccccccCCceE
Q psy4436 110 KTTHFANLKKATGI---EYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 110 k~~~~~~~~~~~~~---~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
|....+.+++.+|+ ++++++.|||+.+|+.+.+.+|...
T Consensus 188 Kg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gv 229 (271)
T PRK03669 188 KDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAV 229 (271)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEE
Confidence 45667888888999 9999999999999999999999643
No 129
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.13 E-value=3e-10 Score=83.30 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceE
Q psy4436 108 GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
.+|+..+++++++++++++++++|||+.+|+.+++.+|+..
T Consensus 162 ~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 162 VDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 45778899999999999999999999999999999998754
No 130
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.13 E-value=8.1e-11 Score=72.97 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=49.1
Q ss_pred ecCCcHHHHHHHHHHhCCCCCcEEEEcCC-cccccccccCCceEEEeCCCCcHH
Q psy4436 106 FPGQKTTHFANLKKATGIEYKDMVFFDDE-ERNSHDVSPLGVTCIHVKDGMSHS 158 (171)
Q Consensus 106 ~~~~k~~~~~~~~~~~~~~~~~~l~vgD~-~~di~~a~~~G~~~i~v~~g~~~~ 158 (171)
+.||.+.+|..++++++++++++++|||+ ..|+.+|+++|+.+++|.+|....
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~ 55 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSP 55 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCC
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCH
Confidence 56999999999999999999999999999 789999999999999999887543
No 131
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.12 E-value=2.9e-09 Score=81.45 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=83.4
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhh-CCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQ-NNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~-~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
.+|+||+||||++..... ....+.+.+.+.|+.|++ .|++++|+|+++. ..+..+++.++
T Consensus 15 ~li~~D~DGTLl~~~~~p------------------~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~-~~~~~~~~~~~ 75 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPHP------------------DQVVVPDNILQGLQLLATANDGALALISGRSM-VELDALAKPYR 75 (266)
T ss_pred EEEEEecCCCCCCCCCCc------------------ccccCCHHHHHHHHHHHhCCCCcEEEEeCCCH-HHHHHhcCccc
Confidence 588899999998732211 123456889999999998 7999999999987 55555665444
Q ss_pred ccc--------------------------------------------------------------------------ccc
Q psy4436 96 WNQ--------------------------------------------------------------------------HFD 101 (171)
Q Consensus 96 l~~--------------------------------------------------------------------------~fd 101 (171)
+.- .|.
T Consensus 76 ~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~ 155 (266)
T PRK10187 76 FPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWP 155 (266)
T ss_pred ceEEEeCCCeeecCCCCeeeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCC
Confidence 221 111
Q ss_pred e---------eeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccC---CceEEEeCC
Q psy4436 102 H---------KEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPL---GVTCIHVKD 153 (171)
Q Consensus 102 ~---------~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~---G~~~i~v~~ 153 (171)
. ++..| -.|...++++++.++++.++++||||..+|+.+.+.+ |..++.+..
T Consensus 156 ~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~ 221 (266)
T PRK10187 156 QLALQPGKCVVEIKPRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGT 221 (266)
T ss_pred ceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECC
Confidence 0 01122 2456778899999999999999999999998887766 446667754
No 132
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.11 E-value=3.5e-11 Score=90.75 Aligned_cols=93 Identities=8% Similarity=-0.025 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-------eEecCCcHHHHHHHHHHhCCC-CCcEE
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-------EIFPGQKTTHFANLKKATGIE-YKDMV 129 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-------~~~~~~k~~~~~~~~~~~~~~-~~~~l 129 (171)
++++.++++.|+++|+++ ++||.+. ......+..++...+|..+ ....||++.+|+.++++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~-~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDR-GINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCE-eccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999999999997 8899866 4444455566666555432 124599999999999999875 67899
Q ss_pred EEcCC-cccccccccCCceEEEeC
Q psy4436 130 FFDDE-ERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 130 ~vgD~-~~di~~a~~~G~~~i~v~ 152 (171)
||||+ ..|+.+|+++|+.+++|.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999 589999999999999884
No 133
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.08 E-value=5.2e-10 Score=84.01 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 108 GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
.+|+..++.++++++++++++++|||+.+|+.+.+.+|. ++.+.++
T Consensus 158 ~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~-~iav~na 203 (236)
T TIGR02471 158 ASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTL-GVVVGNH 203 (236)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCc-EEEEcCC
Confidence 467888999999999999999999999999999999884 4456543
No 134
>PRK11590 hypothetical protein; Provisional
Probab=99.07 E-value=4.3e-10 Score=83.21 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=66.5
Q ss_pred eeeCCCHHHHH-HHHhhCCcEEEEEcCCchhHHHHHHHHhcCc---cccccee-eE-e----cCC---cHHHHHHHHHHh
Q psy4436 55 IKYYRDVPAIL-KYLKQNNCLVAAASRTTEMLRAHQLVDLFNW---NQHFDHK-EI-F----PGQ---KTTHFANLKKAT 121 (171)
Q Consensus 55 ~~~~~~v~~~l-~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l---~~~fd~~-~~-~----~~~---k~~~~~~~~~~~ 121 (171)
..++||+.+.| +.|+++|++++|+||++. ..++.+++.+++ ....... +. + ..+ ..+=..++.+.+
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~-~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~ 172 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQ-PLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKI 172 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcH-HHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHh
Confidence 46699999999 578889999999999988 778888888885 2222111 11 0 011 112234444445
Q ss_pred CCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 122 GIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+.+...+.+-|||.+|+.....+|-. +.|+
T Consensus 173 ~~~~~~~~aY~Ds~~D~pmL~~a~~~-~~vn 202 (211)
T PRK11590 173 GTPLRLYSGYSDSKQDNPLLYFCQHR-WRVT 202 (211)
T ss_pred CCCcceEEEecCCcccHHHHHhCCCC-EEEC
Confidence 66778889999999999999998844 4443
No 135
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.06 E-value=3.5e-09 Score=80.85 Aligned_cols=91 Identities=9% Similarity=0.010 Sum_probs=72.5
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-------------eEecCC------cH-H
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-------------EIFPGQ------KT-T 112 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-------------~~~~~~------k~-~ 112 (171)
....+.||+.++++.|+++|++++|+|++.. ..+...++.+++...+..+ .+++.| |. .
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~-~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~ 196 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIG-NVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHD 196 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcH-HHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHH
Confidence 3688999999999999999999999999987 8888899999885433222 122223 33 4
Q ss_pred HHHHHHHHhC--CCCCcEEEEcCCcccccccccC
Q psy4436 113 HFANLKKATG--IEYKDMVFFDDEERNSHDVSPL 144 (171)
Q Consensus 113 ~~~~~~~~~~--~~~~~~l~vgD~~~di~~a~~~ 144 (171)
.++...+.++ .+++++++|||+.+|+.+|..+
T Consensus 197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 4556778888 8999999999999999998876
No 136
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.06 E-value=1.8e-09 Score=76.25 Aligned_cols=124 Identities=15% Similarity=-0.004 Sum_probs=79.6
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcc--------eecC----ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPF--------KKIG----DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT 82 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~ 82 (171)
.-..+|+|||.||+++.......... .+.. ............++||+.++|+.|++. +.++|+|++.
T Consensus 5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~ 83 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT 83 (156)
T ss_pred CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence 34679999999999865543221100 0000 000112233567899999999999955 9999999998
Q ss_pred hhHHHHHHHHhcCccc-ccceeeEecCCcHHHHHHHH-HHhCCCCCcEEEEcCCcccccc
Q psy4436 83 EMLRAHQLVDLFNWNQ-HFDHKEIFPGQKTTHFANLK-KATGIEYKDMVFFDDEERNSHD 140 (171)
Q Consensus 83 ~~~~~~~~l~~~~l~~-~fd~~~~~~~~k~~~~~~~~-~~~~~~~~~~l~vgD~~~di~~ 140 (171)
+ ..+...++.++... +|.........-...+.+-+ .-++.+.+.+++|||++.-...
T Consensus 84 ~-~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~ 142 (156)
T TIGR02250 84 R-AYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPW 142 (156)
T ss_pred H-HHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhc
Confidence 8 88999999999884 78332111110001123334 3457788999999999964333
No 137
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.03 E-value=2.1e-09 Score=81.65 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHhCCC--CCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 110 KTTHFANLKKATGIE--YKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 110 k~~~~~~~~~~~~~~--~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
|...++++++.++++ .+++++|||+.+|+.+.+.+|.. +++.++
T Consensus 177 Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~-vam~Na 222 (256)
T TIGR01486 177 KGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLA-VVVPGP 222 (256)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEE-EEeCCC
Confidence 445577778888898 99999999999999999999954 444443
No 138
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.02 E-value=6.6e-10 Score=93.17 Aligned_cols=86 Identities=9% Similarity=0.056 Sum_probs=71.6
Q ss_pred eeeeCCCHHHHHHHHhhCC-cEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEc
Q psy4436 54 IIKYYRDVPAILKYLKQNN-CLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g-~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vg 132 (171)
..+++||+.++|+.|+++| ++++++||.+. ..+...++++|+..+|... .|.+|+..+++ ++..+++++|||
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~-~~a~~i~~~lgi~~~f~~~--~p~~K~~~v~~----l~~~~~~v~~vG 454 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNR-SAAEAVAAELGIDEVHAEL--LPEDKLAIVKE----LQEEGGVVAMVG 454 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCH-HHHHHHHHHhCCCeeeccC--CHHHHHHHHHH----HHHcCCEEEEEE
Confidence 4568999999999999999 99999999988 7888899999998888654 34445544444 444677999999
Q ss_pred CCcccccccccCCc
Q psy4436 133 DEERNSHDVSPLGV 146 (171)
Q Consensus 133 D~~~di~~a~~~G~ 146 (171)
|+.+|+.+++++|+
T Consensus 455 Dg~nD~~al~~A~v 468 (556)
T TIGR01525 455 DGINDAPALAAADV 468 (556)
T ss_pred CChhHHHHHhhCCE
Confidence 99999999999994
No 139
>PTZ00174 phosphomannomutase; Provisional
Probab=99.01 E-value=9.6e-09 Score=77.77 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
.+|+|+|||||||++. ..++.|...++|++|+++|++++++|+++. ......+.
T Consensus 4 ~~klia~DlDGTLL~~-----------------------~~~is~~~~~ai~~l~~~Gi~~viaTGR~~-~~i~~~l~ 57 (247)
T PTZ00174 4 KKTILLFDVDGTLTKP-----------------------RNPITQEMKDTLAKLKSKGFKIGVVGGSDY-PKIKEQLG 57 (247)
T ss_pred CCeEEEEECcCCCcCC-----------------------CCCCCHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHh
Confidence 4799999999999762 223456788999999999999999999977 44444444
No 140
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.00 E-value=3.2e-09 Score=75.01 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=73.5
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHH---HHHHHh-
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRA---HQLVDL- 93 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~---~~~l~~- 93 (171)
+|+||+||||++.....++. ...+. -...|++.+++++|+++|++++++|+++. ... +.++..
T Consensus 1 iVisDIDGTL~~sd~~~~~~-----------~~~~~-~~~~~~~~~a~~~l~~~G~~ivy~TGRp~-~~~~~t~~~l~~~ 67 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVV-----------PIIGK-DWTHPGVAKLYRDIQNNGYKILYLTARPI-GQADRTRSYLSQI 67 (157)
T ss_pred CEEEecCCCCcccccccccc-----------ccccc-CcCCHHHHHHHHHHHHcCCeEEEEcCCcH-HHHHHHHHHHHHh
Confidence 48999999999765433221 11111 24579999999999999999999999976 333 356766
Q ss_pred ----cCccc-c-c--ceee--------EecCC---cHHHHHHHHHHhCCCCCcEE-EEcCCcccccccccCCce
Q psy4436 94 ----FNWNQ-H-F--DHKE--------IFPGQ---KTTHFANLKKATGIEYKDMV-FFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 94 ----~~l~~-~-f--d~~~--------~~~~~---k~~~~~~~~~~~~~~~~~~l-~vgD~~~di~~a~~~G~~ 147 (171)
.++.. + + .... ...++ |.+..+.+.+.+.-.-...+ -+||+..|+.+-+++|+.
T Consensus 68 ~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 68 KQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred hhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 33431 1 1 0000 11222 34555666554432222343 489999999999999984
No 141
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.97 E-value=1.4e-09 Score=80.39 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=62.7
Q ss_pred eeeCCCHHHHHH-HHhhCCcEEEEEcCCchhHHHHHHHHhcCc---ccccce-eeE----e-cCC---cHHHHHHHHHHh
Q psy4436 55 IKYYRDVPAILK-YLKQNNCLVAAASRTTEMLRAHQLVDLFNW---NQHFDH-KEI----F-PGQ---KTTHFANLKKAT 121 (171)
Q Consensus 55 ~~~~~~v~~~l~-~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l---~~~fd~-~~~----~-~~~---k~~~~~~~~~~~ 121 (171)
..++|++.+.|+ .++++|++++|+||++. ..++.+.+..++ ...... .+. . ..+ ..+=...+.+.+
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~-~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~ 171 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQ-PLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKI 171 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcH-HHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHh
Confidence 357999999996 78889999999999988 777777767544 222211 111 0 011 112233343444
Q ss_pred CCCCCcEEEEcCCcccccccccCCceE
Q psy4436 122 GIEYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
+.+.+.+.+-|||.+|+.....+|-..
T Consensus 172 ~~~~~~~~aYsDS~~D~pmL~~a~~~~ 198 (210)
T TIGR01545 172 GSPLKLYSGYSDSKQDNPLLAFCEHRW 198 (210)
T ss_pred CCChhheEEecCCcccHHHHHhCCCcE
Confidence 656778899999999999999988543
No 142
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.95 E-value=3.6e-09 Score=88.79 Aligned_cols=85 Identities=11% Similarity=0.127 Sum_probs=69.7
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDD 133 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD 133 (171)
..+++|++.++++.|+++|++++++|+.+. ..++..++.+|+. +|.. ..|.+|.+.++++. .++++++||||
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~-~~a~~ia~~lgi~-~~~~--~~p~~K~~~v~~l~----~~~~~v~~VGD 474 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNR-KTAKAVAKELGIN-VRAE--VLPDDKAALIKELQ----EKGRVVAMVGD 474 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCH-HHHHHHHHHcCCc-EEcc--CChHHHHHHHHHHH----HcCCEEEEEeC
Confidence 346799999999999999999999999988 8888899999996 4432 24455665555543 36789999999
Q ss_pred CcccccccccCCc
Q psy4436 134 EERNSHDVSPLGV 146 (171)
Q Consensus 134 ~~~di~~a~~~G~ 146 (171)
+.+|+.+++++|+
T Consensus 475 g~nD~~al~~A~v 487 (562)
T TIGR01511 475 GINDAPALAQADV 487 (562)
T ss_pred CCccHHHHhhCCE
Confidence 9999999999996
No 143
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.91 E-value=3.3e-08 Score=83.33 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHhCCCCCcEEEE--cCCcccccccccCCceEEE
Q psy4436 110 KTTHFANLKKATGIEYKDMVFF--DDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~v--gD~~~di~~a~~~G~~~i~ 150 (171)
|....+.+++.++++.++++.| ||+.+|+.+.+.+|...+.
T Consensus 614 KG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 614 KGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred HHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 5566788888899988998888 9999999999999975444
No 144
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.90 E-value=2.6e-09 Score=89.20 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=71.3
Q ss_pred eeeCCCHHHHHHHHhhCCc-EEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcC
Q psy4436 55 IKYYRDVPAILKYLKQNNC-LVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDD 133 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~-~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD 133 (171)
.+++|++.++|+.|+++|+ +++++||.+. ..+...++++|+..+|... .|.+|.. ++++++...++++||||
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~-~~a~~i~~~lgi~~~f~~~--~p~~K~~----~i~~l~~~~~~v~~vGD 433 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRR-AVAERVARELGIDEVHAEL--LPEDKLE----IVKELREKYGPVAMVGD 433 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCH-HHHHHHHHHcCChhhhhcc--CcHHHHH----HHHHHHhcCCEEEEEeC
Confidence 4578999999999999999 9999999988 8888899999999888654 3445544 44445556689999999
Q ss_pred CcccccccccCCc
Q psy4436 134 EERNSHDVSPLGV 146 (171)
Q Consensus 134 ~~~di~~a~~~G~ 146 (171)
+.+|+.+++++|+
T Consensus 434 g~nD~~al~~A~v 446 (536)
T TIGR01512 434 GINDAPALAAADV 446 (536)
T ss_pred CHHHHHHHHhCCE
Confidence 9999999999995
No 145
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.89 E-value=8.4e-10 Score=82.58 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCcEEEEeCCCCCCCceec----cccCCcceecC-ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVY----IDVIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRA 87 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~ 87 (171)
.+.+||||+|+|+++...+ ......|.+.. +..... + .-++.|++.++++.++++|++|.++||++.. ...
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~-~-~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVAS-G-KAPAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHC-T-GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhc-c-cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 4679999999999854322 11111222222 112221 2 2388999999999999999999999997553 445
Q ss_pred HHHHHhcCccccccee-eEec--CC------cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccC---CceEEEeCC
Q psy4436 88 HQLVDLFNWNQHFDHK-EIFP--GQ------KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPL---GVTCIHVKD 153 (171)
Q Consensus 88 ~~~l~~~~l~~~fd~~-~~~~--~~------k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~---G~~~i~v~~ 153 (171)
...|.+.|+..+-..+ .... .. |......+.++ | .+=+++|||...|+..++.. |..++.+++
T Consensus 149 ~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~-G--y~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPN 223 (229)
T PF03767_consen 149 EKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKK-G--YRIIANIGDQLSDFSGAKTAGARAERWFKLPN 223 (229)
T ss_dssp HHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHT-T--EEEEEEEESSGGGCHCTHHHHHHHTTEEE-TT
T ss_pred HHHHHHcCCCccchhccccccccccccccccchHHHHHHHHc-C--CcEEEEeCCCHHHhhcccccccccceEEEcCC
Confidence 5578888866432222 1111 11 34445555544 2 23488899999999985443 345565554
No 146
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.88 E-value=2.1e-08 Score=75.83 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccC-------CceEEEeC
Q psy4436 109 QKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPL-------GVTCIHVK 152 (171)
Q Consensus 109 ~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~-------G~~~i~v~ 152 (171)
.|...+++++++++.++++++||||+.+|+.+++.+ |..++.+.
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence 356889999999999999999999999999999888 67777773
No 147
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.85 E-value=5.5e-09 Score=73.83 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=73.7
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCc
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNW 96 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l 96 (171)
|++||||||||+...........+. .........+...||+.++|+.|.+. +.++|.|.+.. ..+...++.+.-
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~----~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~-~ya~~v~~~ldp 74 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFK----IIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASE-EYAEPVLDALDP 74 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEE----EETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-H-HHHHHHHHHHTT
T ss_pred CEEEEeCCCcEEEEeecCCCCcccc----eeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehh-hhhhHHHHhhhh
Confidence 6899999999987554321100000 00001122456799999999999666 99999999977 889999999987
Q ss_pred -ccccceeeE---ecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 97 -NQHFDHKEI---FPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 97 -~~~fd~~~~---~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
..+|+..-. +...+. .+.+-++.++-+++++++|+|++.-...-...++..-.+
T Consensus 75 ~~~~~~~~~~r~~~~~~~~-~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f 132 (159)
T PF03031_consen 75 NGKLFSRRLYRDDCTFDKG-SYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPF 132 (159)
T ss_dssp TTSSEEEEEEGGGSEEETT-EEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----
T ss_pred hcccccccccccccccccc-ccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccc
Confidence 456755411 110000 112455666778999999999998654444444433333
No 148
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.83 E-value=9.2e-09 Score=78.82 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+|+|++||||||++++.+ .++.+.++|++|+++|++++++|++.. ..+..+.+.++
T Consensus 1 ~KLIftDLDGTLLd~~~~-----------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~-~ev~~l~~~Lg 56 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN-----------------------SYGAARQALAALERRSIPLVLYSLRTR-AQLEHLCRQLR 56 (302)
T ss_pred CcEEEEeCCCCCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhC
Confidence 478999999999885443 246688999999999999999999988 56666889999
Q ss_pred ccccc
Q psy4436 96 WNQHF 100 (171)
Q Consensus 96 l~~~f 100 (171)
+..+|
T Consensus 57 l~~p~ 61 (302)
T PRK12702 57 LEHPF 61 (302)
T ss_pred CCCeE
Confidence 87644
No 149
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.83 E-value=2e-08 Score=68.20 Aligned_cols=51 Identities=22% Similarity=0.014 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+|+|+||+||||....-..+ ....+.+++.+.|++|+++|+.++++|+++.
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y-----------------~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~ 51 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDY-----------------ANVAPILAVIEKLRHYKALGFEIVISSSRNM 51 (126)
T ss_pred CCEEEEeCCCCcccCCCCcc-----------------cccccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 37899999999975211000 0134678899999999999999999999866
No 150
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.3e-08 Score=72.24 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=64.3
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE----------------------ecCCcH
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI----------------------FPGQKT 111 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~----------------------~~~~k~ 111 (171)
...+-|+.+++++..++++++++++|++.. -..+.+++.+.-..-.+.+++ +...|+
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~-~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMD-PFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCc-hHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc
Confidence 467889999999999999999999999988 677778888763321111100 111223
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 112 THFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
+..+.+.-+++.++|.||+..|+.+|+....
T Consensus 150 ----~vI~~l~e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 150 ----SVIHELSEPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred ----hhHHHhhcCCceEEEecCCcccccHhhhhhh
Confidence 2345566778889999999999999988664
No 151
>PLN02382 probable sucrose-phosphatase
Probab=98.81 E-value=7.3e-08 Score=78.08 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHh---CCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 109 QKTTHFANLKKAT---GIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 109 ~k~~~~~~~~~~~---~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
.|...++++++++ +++++++++|||+.+|+.+.+.+|+.++.+.++.
T Consensus 175 sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 175 GKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred CHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCc
Confidence 4778899999999 9999999999999999999999998888886654
No 152
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.75 E-value=6.6e-08 Score=71.98 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=82.8
Q ss_pred CCcEEEEeCCCCCCCceecc----ccCCcceecC-ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHH
Q psy4436 15 FPKLAVFDLDHTLWPFHVYI----DVIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRA 87 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~ 87 (171)
...++|||+|.|+++...+. ..+.+|.... +.... ...-++.|++.++++.|+++|++|+++||++.. ...
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~--~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLG--KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHH--cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 35799999999998755431 1123333322 11111 124478999999999999999999999999762 225
Q ss_pred HHHHHhcCcccccceeeEec---C-CcHHHHHHHHH-Hh-CCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 88 HQLVDLFNWNQHFDHKEIFP---G-QKTTHFANLKK-AT-GIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 88 ~~~l~~~~l~~~fd~~~~~~---~-~k~~~~~~~~~-~~-~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
...|.+.|+..+ +.....+ . +....|+.-.+ ++ .-...=+..|||...|+... ..|-.++-+++.
T Consensus 154 ~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~-~~~~RtFKLPNP 224 (229)
T TIGR01675 154 LDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGS-PPGRRTFKLPNP 224 (229)
T ss_pred HHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCC-CccCceeeCCCC
Confidence 567888887754 3331111 1 11122332222 11 12344567799999999664 456677776653
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.69 E-value=1.2e-07 Score=71.86 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 108 GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
-.|....+++++++++++++++++||+.+|+.+. ..+..++.|.+...
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~~ 211 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQP 211 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-H
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCCH
Confidence 3577889999999999999999999999999887 66778998877553
No 154
>PLN02423 phosphomannomutase
Probab=98.67 E-value=3.7e-07 Score=69.08 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.6
Q ss_pred CCCcEEEEcC----CcccccccccCCceEEEeCCCCc
Q psy4436 124 EYKDMVFFDD----EERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 124 ~~~~~l~vgD----~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+++++++||| +.||+.+.+.-|+.++.|++.-.
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~ 235 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDD 235 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHH
Confidence 7889999999 79999999988999999976443
No 155
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.67 E-value=5.2e-08 Score=72.82 Aligned_cols=58 Identities=21% Similarity=0.122 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+|+||+||||++.. ...+...++|++|+++|++++++|+++. ......++.+++.
T Consensus 1 li~~DlDGTLl~~~------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~-~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPG------------------------YEPGPAREALEELKDLGFPIVFVSSKTR-AEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCC------------------------CCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHcCCC
Confidence 48899999997611 1256789999999999999999999987 5566688889876
Q ss_pred ccc
Q psy4436 98 QHF 100 (171)
Q Consensus 98 ~~f 100 (171)
.++
T Consensus 56 ~~~ 58 (225)
T TIGR02461 56 PPF 58 (225)
T ss_pred CcE
Confidence 533
No 156
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.65 E-value=3.4e-07 Score=79.18 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=45.3
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhh-CCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQ-NNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~-~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
.++++||+||||++..... ....+.+.+.++|++|.+ .|+.++++|+++. .....++...
T Consensus 492 ~rLi~~D~DGTL~~~~~~~------------------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~-~~l~~~~~~~ 552 (726)
T PRK14501 492 RRLLLLDYDGTLVPFAPDP------------------ELAVPDKELRDLLRRLAADPNTDVAIISGRDR-DTLERWFGDL 552 (726)
T ss_pred ceEEEEecCccccCCCCCc------------------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCH-HHHHHHhCCC
Confidence 4799999999998743211 122456789999999999 4999999999977 5566566544
Q ss_pred C
Q psy4436 95 N 95 (171)
Q Consensus 95 ~ 95 (171)
+
T Consensus 553 ~ 553 (726)
T PRK14501 553 P 553 (726)
T ss_pred C
Confidence 3
No 157
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.60 E-value=1.8e-07 Score=82.07 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=73.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
+++|++.+.|+.|++.|++++++|+.+. ..++...+.+|+..+|... .|.+|. .++++++..+++++||||+.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~-~~a~~ia~~lgi~~~~~~~--~p~~K~----~~i~~l~~~~~~v~~vGDg~ 722 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNP-TTANAIAKEAGIDEVIAGV--LPDGKA----EAIKRLQSQGRQVAMVGDGI 722 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCCCEEEeCC--CHHHHH----HHHHHHhhcCCEEEEEeCCH
Confidence 5689999999999999999999999987 7788899999998766543 233344 45556677788999999999
Q ss_pred ccccccccCCceEEEeCCC
Q psy4436 136 RNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 136 ~di~~a~~~G~~~i~v~~g 154 (171)
+|+.+++++|+ .+.+.++
T Consensus 723 nD~~al~~Agv-gia~g~g 740 (834)
T PRK10671 723 NDAPALAQADV-GIAMGGG 740 (834)
T ss_pred HHHHHHHhCCe-eEEecCC
Confidence 99999999998 4444443
No 158
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.58 E-value=7e-08 Score=70.29 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=54.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh------HHHHHHHHhcCccc-ccceeeEecCCcHHHHHHHHHHhCCCC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEM------LRAHQLVDLFNWNQ-HFDHKEIFPGQKTTHFANLKKATGIEY 125 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~------~~~~~~l~~~~l~~-~fd~~~~~~~~k~~~~~~~~~~~~~~~ 125 (171)
..+++.||+.++|++|.+.|..+.++|.++.. .....++++. +.. .++.+ .+.+.|. .+..
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~h-f~~i~~~~~-~~~~~K~----------~v~~ 137 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERH-FPFIPYDNL-IFTGDKT----------LVGG 137 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHH-HTHHHHCCE-EEESSGG----------GC--
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHH-cCCCchheE-EEecCCC----------eEec
Confidence 57899999999999999999666666654332 2345577775 221 12222 2223332 1222
Q ss_pred CcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 126 KDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 126 ~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+ ++|+|++.++..+...|+.++++...++
T Consensus 138 D--vlIDD~~~n~~~~~~~g~~~iLfd~p~N 166 (191)
T PF06941_consen 138 D--VLIDDRPHNLEQFANAGIPVILFDQPYN 166 (191)
T ss_dssp S--EEEESSSHHHSS-SSESSEEEEE--GGG
T ss_pred c--EEecCChHHHHhccCCCceEEEEcCCCC
Confidence 2 8999999999999999999999965443
No 159
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.58 E-value=4.9e-07 Score=68.63 Aligned_cols=136 Identities=7% Similarity=0.021 Sum_probs=81.4
Q ss_pred CcEEEEeCCCCCCCceecc--c--cCCcceecC-c-eeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHH
Q psy4436 16 PKLAVFDLDHTLWPFHVYI--D--VIPPFKKIG-D-KVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRA 87 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~--~--~~~~~~~~~-~-~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~ 87 (171)
..++|||+|+|++++..+. + .+.+|.... + ... .....++.|++.++.+.|++.|++|.++||+... +..
T Consensus 101 ~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv--~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 101 KDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFV--NKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHH--hcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 4799999999999654331 1 112332221 1 111 1225567899999999999999999999998652 335
Q ss_pred HHHHHhcCcccccceeeEe-----cCCcHHHHHHHHH-H-hCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 88 HQLVDLFNWNQHFDHKEIF-----PGQKTTHFANLKK-A-TGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 88 ~~~l~~~~l~~~fd~~~~~-----~~~k~~~~~~~~~-~-~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
...|.+.|+..+ +...-. .+....-|+.-.+ + ..-...=+..|||...|+.....-+-.+.-+++.
T Consensus 179 ~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 179 EANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred HHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCc
Confidence 557778887643 322111 1111122332211 1 2233455788999999997655323577777664
No 160
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.56 E-value=5.2e-07 Score=68.48 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=70.8
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh--HHHHHHHHhcCcccc---c----------------------ceee-
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEM--LRAHQLVDLFNWNQH---F----------------------DHKE- 104 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~~~~l~~~---f----------------------d~~~- 104 (171)
.....-+.+.++++.|+++|+++..+|..+.. .....-|+++|+.-. | +++-
T Consensus 78 ~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlf 157 (252)
T PF11019_consen 78 KMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILF 157 (252)
T ss_pred ceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEE
Confidence 44456778999999999999999999987531 333335555666520 0 0000
Q ss_pred EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccc----cCCceEEEeC
Q psy4436 105 IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVS----PLGVTCIHVK 152 (171)
Q Consensus 105 ~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~----~~G~~~i~v~ 152 (171)
...-+|.+.+..++.++|..|+.++||+|+..++.... +.|+..+++.
T Consensus 158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 00145789999999999999999999999999876543 4777766664
No 161
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.53 E-value=7e-07 Score=62.64 Aligned_cols=117 Identities=13% Similarity=0.144 Sum_probs=74.9
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCc--hhHHHHHHHHhc-
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT--EMLRAHQLVDLF- 94 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~--~~~~~~~~l~~~- 94 (171)
+||+|+||||+.+.+..++ ....+.. ...+|+.++.+.++++||++..+|.++ +....+.+|...
T Consensus 1 VVvsDIDGTiT~SD~~G~i-----------~~~~G~d-~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~ 68 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHI-----------LPILGKD-WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQ 68 (157)
T ss_pred CEEEeccCCcCccchhhhh-----------hhccCch-hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHH
Confidence 4889999999976543322 1112222 568999999999999999999999986 335667778777
Q ss_pred ----Ccccc---cc------ee--eEecCCcHHHH-----HHHHHHhCCCCCc-EEEEcCCcccccccccCCce
Q psy4436 95 ----NWNQH---FD------HK--EIFPGQKTTHF-----ANLKKATGIEYKD-MVFFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 95 ----~l~~~---fd------~~--~~~~~~k~~~~-----~~~~~~~~~~~~~-~l~vgD~~~di~~a~~~G~~ 147 (171)
+++.- +. .. +.. ..+|+.| +.+...+...... ..-+|++..|+.+-+++|+.
T Consensus 69 q~~~~lP~Gpv~~sP~~l~~al~rEvi-~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 69 QQGHNLPDGPVLLSPDSLFSALHREVI-SKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred hCCccCCCCCEEECCcchhhhhhcccc-ccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 55531 11 00 111 2234333 3333333312222 33399999999999999984
No 162
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.52 E-value=1.9e-06 Score=75.50 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHH-hhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYL-KQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L-~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
+.++|++|+||||++.... ...+.|++.++|++| ++.|..++|+|+++. .....++..
T Consensus 595 ~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~-~~L~~~f~~ 653 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSR-KTLADWFSP 653 (854)
T ss_pred cCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH-HHHHHHhCC
Confidence 3578999999999863321 224567899999998 677999999999877 666666644
No 163
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.49 E-value=6.2e-07 Score=79.13 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=73.6
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee---------------------eEecCCcHHH
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK---------------------EIFPGQKTTH 113 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~---------------------~~~~~~k~~~ 113 (171)
-++.|++.++++.|++.|+++.++|+.+. ..+....+.+|+...++.. ..+....|+.
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~-~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~ 605 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQ-ETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEH 605 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHH
Confidence 36799999999999999999999999977 8888899999998655322 2344455555
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 114 FANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
-..+.+.++...+.+.|+||+.+|+.+.+++++
T Consensus 606 K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdV 638 (884)
T TIGR01522 606 KMKIVKALQKRGDVVAMTGDGVNDAPALKLADI 638 (884)
T ss_pred HHHHHHHHHHCCCEEEEECCCcccHHHHHhCCe
Confidence 566666666667899999999999999999995
No 164
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.47 E-value=6.6e-07 Score=64.59 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCHH----HHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-eEe-----------cC--C--cHHHHHHH
Q psy4436 58 YRDVP----AILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-EIF-----------PG--Q--KTTHFANL 117 (171)
Q Consensus 58 ~~~v~----~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~~~-----------~~--~--k~~~~~~~ 117 (171)
+|++. ++|+.++++|++++|+|+++. ..++.+++.+++...+-.. ... .. . |...++.+
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~-~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~ 165 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPD-EIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKEL 165 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEH-HHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHH
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcH-HHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHH
Confidence 46666 999999999999999999988 8888899999988643111 111 11 1 77777777
Q ss_pred ---HHHhCCCCCcEEEEcCCcccccccc
Q psy4436 118 ---KKATGIEYKDMVFFDDEERNSHDVS 142 (171)
Q Consensus 118 ---~~~~~~~~~~~l~vgD~~~di~~a~ 142 (171)
... +.++..+++|||+.+|+.+++
T Consensus 166 ~~~~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 166 YIRDEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHH-THTCCEEEEEESSGGGHHHHH
T ss_pred HHHhhc-CCCCCeEEEEECCHHHHHHhC
Confidence 444 888999999999999998764
No 165
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.46 E-value=2.3e-06 Score=62.71 Aligned_cols=59 Identities=27% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF 94 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~ 94 (171)
++++|+.|+||||+++ .+. ...+..++.+|++.|++|+.+|+....+ .....+.+
T Consensus 6 ~~~lIFtDlD~TLl~~-~ye-----------------------~~pA~pv~~el~d~G~~Vi~~SSKT~aE-~~~l~~~l 60 (274)
T COG3769 6 MPLLIFTDLDGTLLPH-SYE-----------------------WQPAAPVLLELKDAGVPVILCSSKTRAE-MLYLQKSL 60 (274)
T ss_pred cceEEEEcccCcccCC-CCC-----------------------CCccchHHHHHHHcCCeEEEeccchHHH-HHHHHHhc
Confidence 5677778999999883 321 2336789999999999999999998844 44477788
Q ss_pred Cccc
Q psy4436 95 NWNQ 98 (171)
Q Consensus 95 ~l~~ 98 (171)
++..
T Consensus 61 ~v~~ 64 (274)
T COG3769 61 GVQG 64 (274)
T ss_pred CCCC
Confidence 8773
No 166
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.44 E-value=1.4e-06 Score=64.69 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCcEEEEeCCCCCCCceeccc----cCCcceecC-ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhH---H
Q psy4436 15 FPKLAVFDLDHTLWPFHVYID----VIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEML---R 86 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~---~ 86 (171)
..++||.|+|.|++|...+.. -..+|.+.. +...+. ....+.||+.++++..-++|.+|..+||+.+.. .
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a--~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~ 155 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQA--KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDG 155 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhh--cccccCccHHHHHHHHHhcCcEEEEEeccchhcccch
Confidence 356999999999998776632 234565555 333332 256789999999999999999999999986632 2
Q ss_pred HHHHHHhcCcccccceeeEe---cCCcHHHHHHHHHHhCCCCCcEEEEcCCccccccc
Q psy4436 87 AHQLVDLFNWNQHFDHKEIF---PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDV 141 (171)
Q Consensus 87 ~~~~l~~~~l~~~fd~~~~~---~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a 141 (171)
...-|.+.|++..-...-.+ .++|..-++.+.+ ..+=+++|||+..|....
T Consensus 156 T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k----~~~iVm~vGDNl~DF~d~ 209 (274)
T COG2503 156 TIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEK----DYKIVMLVGDNLDDFGDN 209 (274)
T ss_pred hHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhh----ccceeeEecCchhhhcch
Confidence 33466777777544322122 2455555555544 556789999999976543
No 167
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.41 E-value=3.7e-06 Score=56.69 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=76.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcC
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDD 133 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD 133 (171)
.-.+|+.+.+.|+.|++. +.++|+|+-.. .+..+.++..|++.. ..+....++.=.++++.++-+.+.+++|||
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~-gsl~~lae~~gi~~~----rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRK-GSLVQLAEFVGIPVE----RVFAGADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcc-hHHHHHHHHcCCcee----eeecccCHHHHHHHHHHhcCCCcEEEEecC
Confidence 557899999999999999 99999999755 777778888886632 233345566677888888888899999999
Q ss_pred CcccccccccCCceEEEeCC
Q psy4436 134 EERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 134 ~~~di~~a~~~G~~~i~v~~ 153 (171)
+.+|+.+.+++.+..+-+.+
T Consensus 102 GaND~laLr~ADlGI~tiq~ 121 (152)
T COG4087 102 GANDILALREADLGICTIQQ 121 (152)
T ss_pred CcchHHHhhhcccceEEecc
Confidence 99999999998776666654
No 168
>KOG2961|consensus
Probab=98.37 E-value=3.2e-06 Score=58.50 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-C-cEEEEEcCCchh-------H
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-N-CLVAAASRTTEM-------L 85 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g-~~i~i~S~~~~~-------~ 85 (171)
.+|++|||=|++++-.+ .....|....-+++++.. | ..++++||+--. .
T Consensus 42 ~ikavVlDKDNcit~P~----------------------~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s 99 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPY----------------------SLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDS 99 (190)
T ss_pred CceEEEEcCCCeeeCCc----------------------ccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchH
Confidence 47999999999996422 234467777778888864 3 678899985221 3
Q ss_pred HHHHHHHhcCcccccceeeEecCCcH----HHHHHHHHHhC-CCCCcEEEEcCCcc-cccccccCCceEEEeCCCCc
Q psy4436 86 RAHQLVDLFNWNQHFDHKEIFPGQKT----THFANLKKATG-IEYKDMVFFDDEER-NSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 86 ~~~~~l~~~~l~~~fd~~~~~~~~k~----~~~~~~~~~~~-~~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~g~~ 156 (171)
.++.+.++.|++ +--.++-|| +.+.+....-. .+++|++||||+.- |+..|...|.-+++..+|..
T Consensus 100 ~Ak~le~k~gIp-----VlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~ 171 (190)
T KOG2961|consen 100 KAKALEAKIGIP-----VLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVR 171 (190)
T ss_pred HHHHHHHhhCCc-----eEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEeccccc
Confidence 344455556665 212333333 44444432111 57999999999999 99999999999999988754
No 169
>PLN02580 trehalose-phosphatase
Probab=98.36 E-value=1.1e-05 Score=64.64 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=39.2
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHH
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLV 91 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l 91 (171)
+++||+||||.+.... .....+.+++.++|++|.+. .+++|+|+++. +.+..++
T Consensus 121 ~LfLDyDGTLaPIv~~------------------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~-~~L~~~l 174 (384)
T PLN02580 121 ALFLDYDGTLSPIVDD------------------PDRALMSDAMRSAVKNVAKY-FPTAIISGRSR-DKVYELV 174 (384)
T ss_pred EEEEecCCccCCCCCC------------------cccccCCHHHHHHHHHHhhC-CCEEEEeCCCH-HHHHHHh
Confidence 6777999999873322 23445678999999999988 68999999876 4444444
No 170
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=98.31 E-value=3.1e-06 Score=64.32 Aligned_cols=103 Identities=21% Similarity=0.195 Sum_probs=77.8
Q ss_pred cCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
..|.+||||||.||+..+-. ..-..|.+.+.|.+|++.|..+++=|.++. +-+...++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~--------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~-eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD--------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNR-EHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc--------------------cccCChHHHHHHHHHHHcCCEEEEecCCCH-HHHHHHHHH
Confidence 45789999999999753322 223468899999999999999999998888 667779999
Q ss_pred cCcccccceeeEe----------------------c------------CCc-HHHHHHHHHHhCCCCCc-EEEEcCCccc
Q psy4436 94 FNWNQHFDHKEIF----------------------P------------GQK-TTHFANLKKATGIEYKD-MVFFDDEERN 137 (171)
Q Consensus 94 ~~l~~~fd~~~~~----------------------~------------~~k-~~~~~~~~~~~~~~~~~-~l~vgD~~~d 137 (171)
+++..+|+.+... + -|| |....+.+++.|++.-. +..|||-..|
T Consensus 179 ~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~N 258 (297)
T PF05152_consen 179 LKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSN 258 (297)
T ss_pred hCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCccc
Confidence 9999999665110 0 122 45688899999998654 6668887764
No 171
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=98.29 E-value=1.2e-05 Score=58.60 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=71.7
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
.|++|+|||+||+++.+... ....-..|++.++|+.+.+. +.|+|-|.+.. ..+...+..++
T Consensus 21 kklLVLDLDeTLvh~~~~~~----------------~~~~~kRP~l~eFL~~~~~~-feIvVwTAa~~-~ya~~~l~~l~ 82 (195)
T TIGR02245 21 KKLLVLDIDYTLFDHRSPAE----------------TGEELMRPYLHEFLTSAYED-YDIVIWSATSM-KWIEIKMTELG 82 (195)
T ss_pred CcEEEEeCCCceEcccccCC----------------CceEEeCCCHHHHHHHHHhC-CEEEEEecCCH-HHHHHHHHHhc
Confidence 47999999999997533211 11335689999999999985 99999999877 88888888876
Q ss_pred cccc--c------cee-----eEec-C---CcHHHHHHHHHHhC--CCCCcEEEEcCCcccccccccCCc
Q psy4436 96 WNQH--F------DHK-----EIFP-G---QKTTHFANLKKATG--IEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 96 l~~~--f------d~~-----~~~~-~---~k~~~~~~~~~~~~--~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
+... + +.. .... + -|. +..+.++++ .+.+++++|||++.....==..|+
T Consensus 83 ~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd--L~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 83 VLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP--LGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred ccCCccceEEEEeccccceeeEeeccCcEEEee--cHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence 5321 1 100 0000 1 111 223333444 377899999999996443333354
No 172
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.23 E-value=3.9e-06 Score=72.80 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=66.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.+.++.|++.|++++++|+.+. ..++.+.+.+|+..++. ..|..|+..++.+ + .+..++||||+.
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~-~~a~~ia~~lgi~~~~~---~~p~~K~~~v~~l----~-~~~~v~mvGDgi 638 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNP-RAAAAIAGELGIDFRAG---LLPEDKVKAVTEL----N-QHAPLAMVGDGI 638 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHcCCCeecC---CCHHHHHHHHHHH----h-cCCCEEEEECCH
Confidence 5789999999999999999999999977 88888999999974432 2344455545443 3 236899999999
Q ss_pred ccccccccCCc
Q psy4436 136 RNSHDVSPLGV 146 (171)
Q Consensus 136 ~di~~a~~~G~ 146 (171)
+|..+.+++++
T Consensus 639 NDapAl~~A~v 649 (741)
T PRK11033 639 NDAPAMKAASI 649 (741)
T ss_pred HhHHHHHhCCe
Confidence 99999999984
No 173
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.16 E-value=8.3e-06 Score=66.58 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=69.3
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc---------CcccccceeeEe-cCC-------------
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF---------NWNQHFDHKEIF-PGQ------------- 109 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~---------~l~~~fd~~~~~-~~~------------- 109 (171)
.-+...|.+..+|++|+++|.++.++||++. ..+...+..+ .+.++||.+... .||
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~-~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd 258 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPF-DYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVD 258 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-H-HHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEE
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCC-chhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEE
Confidence 4456678999999999999999999999987 7777777764 455678776221 122
Q ss_pred ---------c------------HHHHHHHHHHhCCCCCcEEEEcCCcc-ccccccc-CCceEEEeCCCCc
Q psy4436 110 ---------K------------TTHFANLKKATGIEYKDMVFFDDEER-NSHDVSP-LGVTCIHVKDGMS 156 (171)
Q Consensus 110 ---------k------------~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~-~G~~~i~v~~g~~ 156 (171)
+ ......+.+.++....+++||||+.. |+..+++ .||.+++|-....
T Consensus 259 ~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe 328 (448)
T PF05761_consen 259 TETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELE 328 (448)
T ss_dssp TTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHH
T ss_pred CCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehhhh
Confidence 0 13356777778999999999999999 8877777 5999999966543
No 174
>KOG2630|consensus
Probab=98.15 E-value=1.2e-05 Score=59.18 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=75.2
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC----ccc----ccceeeEecCCcHHHHHHHHHHhCCCCC
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN----WNQ----HFDHKEIFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~----l~~----~fd~~~~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
-..++++..+++.++..|++++|.|..+. ...+ ++.... +.. |||. .+..|-....|.+|.+.++.++.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv-~AqK-llfg~s~~gdl~~y~~gyfDt-~iG~K~e~~sy~~I~~~Ig~s~~ 198 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSV-AAQK-LLFGYSDAGDLRKYISGYFDT-TIGLKVESQSYKKIGHLIGKSPR 198 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcH-HHHH-HHHcccCcchHHHHhhhhhhc-cccceehhHHHHHHHHHhCCChh
Confidence 36799999999999999999999999876 4444 444332 222 4444 23335556789999999999999
Q ss_pred cEEEEcCCcccccccccCCceEEEeC
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
+++|+-|......+|+.+|+.+..+.
T Consensus 199 eiLfLTd~~~Ea~aa~~aGl~a~l~~ 224 (254)
T KOG2630|consen 199 EILFLTDVPREAAAARKAGLQAGLVS 224 (254)
T ss_pred heEEeccChHHHHHHHhcccceeeee
Confidence 99999999999999999999888774
No 175
>KOG2134|consensus
Probab=98.06 E-value=1.9e-05 Score=62.36 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh----------
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM---------- 84 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~---------- 84 (171)
.-|.+.||+||||++.-+...+ ......-..++|.+..=|++|...||+++|.||...+
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf-----------~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f 142 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVF-----------PKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEF 142 (422)
T ss_pred CcceEEEecCCceeecCCccee-----------eccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHH
Confidence 3578999999999986654321 1111223456889999999999999999999996543
Q ss_pred -HHHHHHHHhcCccccccee---eEecCCcHHHHHHHHHHhC----CCCCcEEEEcCCcc
Q psy4436 85 -LRAHQLVDLFNWNQHFDHK---EIFPGQKTTHFANLKKATG----IEYKDMVFFDDEER 136 (171)
Q Consensus 85 -~~~~~~l~~~~l~~~fd~~---~~~~~~k~~~~~~~~~~~~----~~~~~~l~vgD~~~ 136 (171)
..++.+.+.++++-.+-.. ..+.+|-..+++...+.++ +....+.|+||-..
T Consensus 143 ~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaag 202 (422)
T KOG2134|consen 143 KKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAG 202 (422)
T ss_pred HHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhcc
Confidence 2334445556665332111 3356888888888876654 45556778888554
No 176
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.00 E-value=3.6e-05 Score=68.40 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=71.0
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc--------cccee-----------------eEecCC
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ--------HFDHK-----------------EIFPGQ 109 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~--------~fd~~-----------------~~~~~~ 109 (171)
-++.|++.++++.|++.|+++.++|+... ..+....+.+|+.. .++.. ..+...
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~-~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~ 614 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNK-ETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRV 614 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEec
Confidence 35789999999999999999999999866 78888999999863 12110 122222
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
.|+.=.++.+.++-..+.+.|+||+.+|+.+.+++++ ++.+..|
T Consensus 615 ~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV-Gia~g~g 658 (917)
T TIGR01116 615 EPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI-GIAMGSG 658 (917)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe-eEECCCC
Confidence 2333344555555556789999999999999999998 4455444
No 177
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.7e-05 Score=68.14 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=68.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.++++.||++|+++.++|+-++ ..++...+.+|++.++-. ..|..|.+..+++. -....+.||||+.
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~-~~A~~iA~~lGId~v~Ae--llPedK~~~V~~l~----~~g~~VamVGDGI 609 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNR-RTAEAIAKELGIDEVRAE--LLPEDKAEIVRELQ----AEGRKVAMVGDGI 609 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcChHhhecc--CCcHHHHHHHHHHH----hcCCEEEEEeCCc
Confidence 4688999999999999999999999877 888989999999876544 36666776666655 2337899999999
Q ss_pred ccccccccCCc
Q psy4436 136 RNSHDVSPLGV 146 (171)
Q Consensus 136 ~di~~a~~~G~ 146 (171)
||-.+...+.+
T Consensus 610 NDAPALA~AdV 620 (713)
T COG2217 610 NDAPALAAADV 620 (713)
T ss_pred hhHHHHhhcCe
Confidence 99877776653
No 178
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.88 E-value=4.9e-05 Score=65.09 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=71.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.+.++.|++.|+++.++|+.+. ..+....+.+|+..+|.. ..|..|...++.+.+ ..+.+.|+||+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~-~ta~~iA~~lGI~~v~a~--~~PedK~~~v~~lq~----~g~~VamvGDG~ 518 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNR-LTAAAIAAEAGVDDFIAE--ATPEDKIALIRQEQA----EGKLVAMTGDGT 518 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHcCCCEEEcC--CCHHHHHHHHHHHHH----cCCeEEEECCCc
Confidence 5788999999999999999999999877 888889999999865532 234445555655543 245799999999
Q ss_pred ccccccccCCceEEEeCCCC
Q psy4436 136 RNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 136 ~di~~a~~~G~~~i~v~~g~ 155 (171)
+|..+.+++++. +.+..|.
T Consensus 519 NDapAL~~AdvG-iAm~~gt 537 (675)
T TIGR01497 519 NDAPALAQADVG-VAMNSGT 537 (675)
T ss_pred chHHHHHhCCEe-EEeCCCC
Confidence 999999999864 3444443
No 179
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00018 Score=54.99 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHHHHHHh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
..++++||+||||.+.-.. .....+.+++.++|+.|..+ ...++|+|+.+. .....++.-
T Consensus 17 ~~~~~~lDyDGTl~~i~~~------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~-~~l~~~~~v 77 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPH------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRSL-AELERLFGV 77 (266)
T ss_pred cceEEEEeccccccccccC------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHhcCC
Confidence 3578999999999763332 23556788999999999988 446999999977 666666664
Q ss_pred cCc
Q psy4436 94 FNW 96 (171)
Q Consensus 94 ~~l 96 (171)
.++
T Consensus 78 ~~i 80 (266)
T COG1877 78 PGI 80 (266)
T ss_pred CCc
Confidence 443
No 180
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.87 E-value=2.1e-05 Score=55.90 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=78.7
Q ss_pred CCcEEEEeCCCCCCCceecc-ccCCcceecC----------ceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 15 FPKLAVFDLDHTLWPFHVYI-DVIPPFKKIG----------DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.|=.|-||+|.|++=+.-.. +...-|.+.. +.+......-.-+.+-++++|..=++.|=+|+.+|++..
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~ 141 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTP 141 (237)
T ss_pred CCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 34579999999997322221 1111222221 222222333333444577788888899999999998754
Q ss_pred h---HHHHHHHHhcCcccccceeeEecCCcHHHHHH--HHHHhCCCCCcEEEEcCCcccccccccCCceEEEeC
Q psy4436 84 M---LRAHQLVDLFNWNQHFDHKEIFPGQKTTHFAN--LKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVK 152 (171)
Q Consensus 84 ~---~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~--~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~ 152 (171)
- .....+.+.+++.......-...+||+.-|.+ +++.. .--++-||+.+|+.+|+.+|+..+.+-
T Consensus 142 gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~----~~~IhYGDSD~Di~AAkeaG~RgIRil 211 (237)
T COG3700 142 GKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDK----NIRIHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred CcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhc----CceEEecCCchhhhHHHhcCccceeEE
Confidence 1 22333444455543222222233666644433 23333 346899999999999999999888773
No 181
>PLN03017 trehalose-phosphatase
Probab=97.79 E-value=4.5e-05 Score=60.66 Aligned_cols=55 Identities=16% Similarity=0.043 Sum_probs=40.1
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHH
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLV 91 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l 91 (171)
-+|++|+||||.+...+ .....+.+++.++|++|. +|++++|+|+++. ..+..+.
T Consensus 112 ~llflD~DGTL~Piv~~------------------p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~-~~l~~~~ 166 (366)
T PLN03017 112 IVMFLDYDGTLSPIVDD------------------PDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI-DKVYNFV 166 (366)
T ss_pred eEEEEecCCcCcCCcCC------------------cccccCCHHHHHHHHHHh-cCCcEEEEeCCCH-HHHHHhh
Confidence 36777999999852221 112256788999999999 7799999999987 5555454
No 182
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.78 E-value=0.00013 Score=62.58 Aligned_cols=93 Identities=10% Similarity=0.085 Sum_probs=70.5
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.+.+++|++.|+++.++|+-+. ..+....+.+|+..+|... .|..|....+. ++-.-+-+.|+||+.
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~-~TA~aIA~elGI~~v~A~~--~PedK~~iV~~----lQ~~G~~VaMtGDGv 513 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNE-LTAATIAKEAGVDRFVAEC--KPEDKINVIRE----EQAKGHIVAMTGDGT 513 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCceEEcCC--CHHHHHHHHHH----HHhCCCEEEEECCCh
Confidence 5789999999999999999999999876 8888899999998655332 34444444444 333346789999999
Q ss_pred ccccccccCCceEEEeCCCCc
Q psy4436 136 RNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 136 ~di~~a~~~G~~~i~v~~g~~ 156 (171)
||..+.+++.+ ++.+..|+.
T Consensus 514 NDAPALa~ADV-GIAMgsGTd 533 (673)
T PRK14010 514 NDAPALAEANV-GLAMNSGTM 533 (673)
T ss_pred hhHHHHHhCCE-EEEeCCCCH
Confidence 99999999875 344444543
No 183
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.72 E-value=0.00011 Score=63.02 Aligned_cols=92 Identities=10% Similarity=0.086 Sum_probs=69.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.+.+++|++.|+++.++|+-+. ..++.+.+.+|+.++|.. ..|..|.+..+.. +-.-+-+.|+||+.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~-~TA~aIA~elGId~v~A~--~~PedK~~iV~~l----Q~~G~~VaMtGDGv 517 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNP-LTAAAIAAEAGVDDFLAE--ATPEDKLALIRQE----QAEGRLVAMTGDGT 517 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCcEEEcc--CCHHHHHHHHHHH----HHcCCeEEEECCCc
Confidence 4689999999999999999999999866 888889999999765432 2344444444443 33346699999999
Q ss_pred ccccccccCCceEEEeCCCC
Q psy4436 136 RNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 136 ~di~~a~~~G~~~i~v~~g~ 155 (171)
||..+.+++.+- +.+..|+
T Consensus 518 NDAPALa~ADVG-IAMgsGT 536 (679)
T PRK01122 518 NDAPALAQADVG-VAMNSGT 536 (679)
T ss_pred chHHHHHhCCEe-EEeCCCC
Confidence 999999888753 3444444
No 184
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=97.70 E-value=6.6e-05 Score=56.39 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=30.2
Q ss_pred EEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHHHH
Q psy4436 20 VFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAHQL 90 (171)
Q Consensus 20 vfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~~~ 90 (171)
+||+||||.+..... ....+.+++.++|++|.+. +..++|+|+.+. +..+.+
T Consensus 1 ~lDyDGTL~p~~~~p------------------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~-~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP------------------DAAVPPPELRELLRALAADPNNTVAIVSGRSL-DDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-G------------------GG----HHHHHHHHHHHHHSE--EEEE-SS-H-HHHHHH
T ss_pred CcccCCccCCCCCCc------------------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCH-HHhHHh
Confidence 589999998744432 2456788999999999987 346999999977 444434
No 185
>PLN02151 trehalose-phosphatase
Probab=97.67 E-value=7.6e-05 Score=59.15 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=41.3
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
.+++||+||||.+.... .....+.|++.++|+.|. ++++++|+|+++. ..+..++.
T Consensus 99 ~ll~lDyDGTL~PIv~~------------------P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~-~~l~~~~~ 154 (354)
T PLN02151 99 IVMFLDYDGTLSPIVDD------------------PDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCR-EKVSSFVK 154 (354)
T ss_pred eEEEEecCccCCCCCCC------------------cccccCCHHHHHHHHHHh-cCCCEEEEECCCH-HHHHHHcC
Confidence 36777999999863222 223456789999999999 4589999999987 55555654
No 186
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.45 E-value=0.00046 Score=60.27 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=69.0
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-cce-----------------------eeEecCCc
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-FDH-----------------------KEIFPGQK 110 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-fd~-----------------------~~~~~~~k 110 (171)
-++.|++.++++.|++.|+++.++|+-+. ..++...+.+|+... +.. ...+..-.
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~-~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~ 519 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHL-AIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVF 519 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecC
Confidence 36789999999999999999999999876 888889999998641 100 00122222
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 111 TTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
|+.=..+.+.++-.-+-+.|+||+.+|..+.+++.+- +.+..|.
T Consensus 520 Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVG-IAm~~gt 563 (755)
T TIGR01647 520 PEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVG-IAVAGAT 563 (755)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCee-EEecCCc
Confidence 3222333444444456799999999999999998764 4444443
No 187
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=97.44 E-value=0.00032 Score=55.56 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM 84 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~ 84 (171)
..|+|.||=|+||++ .|..+.....++..|-.|-++|++|+|+|....+
T Consensus 146 ~L~LvTFDgDvTLY~---------------------DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~ 194 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYE---------------------DGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYP 194 (408)
T ss_pred CceEEEEcCCccccc---------------------CCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 578999999999976 2334445566777777788899999999976554
No 188
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.43 E-value=0.00051 Score=60.88 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=67.9
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc--ccc-----------------eeeEecCCcHHHHH
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ--HFD-----------------HKEIFPGQKTTHFA 115 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~--~fd-----------------~~~~~~~~k~~~~~ 115 (171)
-++.|++.++++.|++.|+++.++|+-+. ..+....+.+|+.. ... ....+..-.|+.=.
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~-~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~ 592 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNE-IVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKS 592 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH
Confidence 35688999999999999999999999866 88888999999962 110 00122222232223
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 116 NLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 116 ~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
++.+.++-.-+.+.|+||+.+|..+.+++++. +.+..|.
T Consensus 593 ~iV~~lq~~G~vVam~GDGvNDapALk~AdVG-IAmg~gt 631 (867)
T TIGR01524 593 RIIGLLKKAGHTVGFLGDGINDAPALRKADVG-ISVDTAA 631 (867)
T ss_pred HHHHHHHhCCCEEEEECCCcccHHHHHhCCEE-EEeCCcc
Confidence 33333333446799999999999999998864 3344443
No 189
>KOG0207|consensus
Probab=97.41 E-value=0.00047 Score=59.95 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=64.7
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
-.+.|++..+++.||+.|++++++|+-+. ..++...+.+|+...+. +..|..|.+.++++.+ ....+.||||+
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~-~aA~svA~~VGi~~V~a--ev~P~~K~~~Ik~lq~----~~~~VaMVGDG 794 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDND-AAARSVAQQVGIDNVYA--EVLPEQKAEKIKEIQK----NGGPVAMVGDG 794 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCH-HHHHHHHHhhCcceEEe--ccCchhhHHHHHHHHh----cCCcEEEEeCC
Confidence 34678999999999999999999999888 88888999999554332 3355666677777654 33779999999
Q ss_pred cccccccccCC
Q psy4436 135 ERNSHDVSPLG 145 (171)
Q Consensus 135 ~~di~~a~~~G 145 (171)
.||-.+.-++.
T Consensus 795 INDaPALA~Ad 805 (951)
T KOG0207|consen 795 INDAPALAQAD 805 (951)
T ss_pred CCccHHHHhhc
Confidence 99966655543
No 190
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.38 E-value=0.00059 Score=60.66 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=68.4
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-------cce------------eeEecCCcHHHHH
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-------FDH------------KEIFPGQKTTHFA 115 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-------fd~------------~~~~~~~k~~~~~ 115 (171)
-++.|++.++++.|++.|+++.++|+-+. ..+....+.+|+... ++. ...+..-.|+.=.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~-~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~ 627 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSE-LVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKE 627 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHH
Confidence 35688999999999999999999999866 888889999999620 000 0122222333333
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 116 NLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 116 ~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
++.+.++-.-+-+.|+||+.||..+.+++.+- +.+..|.
T Consensus 628 ~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVG-IAmg~gt 666 (902)
T PRK10517 628 RIVTLLKREGHVVGFMGDGINDAPALRAADIG-ISVDGAV 666 (902)
T ss_pred HHHHHHHHCCCEEEEECCCcchHHHHHhCCEE-EEeCCcC
Confidence 34444444456799999999999999998753 3343443
No 191
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.34 E-value=0.00079 Score=60.22 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=63.7
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc---------cc------------eeeEecCCcHHHH
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH---------FD------------HKEIFPGQKTTHF 114 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~---------fd------------~~~~~~~~k~~~~ 114 (171)
++.|++.++++.|++.|+++.++|+-.. ..+....+.+|+..- |+ ....+..-.|+.=
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~-~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNI-DTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCh-HHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 6788999999999999999999999866 888889999998631 00 0012222223222
Q ss_pred HHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 115 ANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 115 ~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
..+.+.++-.-+-+.|+||+.+|..+.+++.+
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdV 689 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADV 689 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCCc
Confidence 23333333334579999999999999988764
No 192
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.33 E-value=0.00067 Score=60.35 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=68.3
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-------cce------------eeEecCCcHHHHH
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-------FDH------------KEIFPGQKTTHFA 115 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-------fd~------------~~~~~~~k~~~~~ 115 (171)
-++.|++.++++.|++.|+++.++|+-+. ..+....+.+|+..- ++. ...+..-.|+.=.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~-~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNP-IVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 36788999999999999999999999866 888889999999620 000 0112222233233
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCC
Q psy4436 116 NLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 116 ~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~ 155 (171)
++.+.++-.-+-+.|+||+.+|..+.+++.+- +.+..|.
T Consensus 628 ~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVG-IAmg~gt 666 (903)
T PRK15122 628 RVLKALQANGHTVGFLGDGINDAPALRDADVG-ISVDSGA 666 (903)
T ss_pred HHHHHHHhCCCEEEEECCCchhHHHHHhCCEE-EEeCccc
Confidence 33344443456799999999999999998864 4444444
No 193
>KOG1618|consensus
Probab=97.10 E-value=0.0023 Score=49.71 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=65.2
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC----CcEEEEEcCCch---hHHHHHH
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN----NCLVAAASRTTE---MLRAHQL 90 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~----g~~i~i~S~~~~---~~~~~~~ 90 (171)
.++||+||+|.. +-.+.|++.++++.|.++ .++.+++||..- ...+..+
T Consensus 37 gfafDIDGVL~R------------------------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~l 92 (389)
T KOG1618|consen 37 GFAFDIDGVLFR------------------------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQEL 92 (389)
T ss_pred eEEEecccEEEe------------------------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHH
Confidence 699999999954 446689999999999998 799999998632 1233334
Q ss_pred HHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEE
Q psy4436 91 VDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 91 l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~ 150 (171)
-+.++...- ..+.+.--.| |+.+. ....+.++.+|+.. --..|+..|++.+.
T Consensus 93 S~~Lgv~Vs--~dqviqSHsP--~r~l~---~~~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 93 SALLGVEVS--ADQVIQSHSP--FRLLV---EYHYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred HHhhCCccC--HHHHHhhcCh--HHHHh---hhhhceEEEecCCc-HHHHhhccCcccee
Confidence 444554411 1111111123 55554 24568999999543 34667778886554
No 194
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.04 E-value=0.0028 Score=57.32 Aligned_cols=91 Identities=9% Similarity=-0.066 Sum_probs=64.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc---------c-ee---------------------e
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF---------D-HK---------------------E 104 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f---------d-~~---------------------~ 104 (171)
++.|++.++++.|++.|+++.++|+-.. ..+....+.+|+.... + .+ .
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~-~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFP-ETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 5688999999999999999999999866 8888899999985310 0 00 0
Q ss_pred EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCce
Q psy4436 105 IFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 105 ~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~ 147 (171)
.+..-.|+.=..+.+.++-.-+.+.|+||+.+|..+.+++++.
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVG 767 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVG 767 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCcc
Confidence 1222223222333344443456789999999999999987753
No 195
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.96 E-value=0.0049 Score=50.18 Aligned_cols=94 Identities=11% Similarity=0.020 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCccccccee-----eEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHK-----EIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~-----~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
.....++.+.+.++|.+|+++|.--.| +..+.++...|.+.+--.+ .-..|.....|..+++..+++|...+.+
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~ 180 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHC 180 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEEe
Confidence 335667899999999999999985332 6677788888866322111 2234666788999999999999999999
Q ss_pred cCCcc-cccccccCCceEEEe
Q psy4436 132 DDEER-NSHDVSPLGVTCIHV 151 (171)
Q Consensus 132 gD~~~-di~~a~~~G~~~i~v 151 (171)
||+.+ |...++++|+.+...
T Consensus 181 GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 181 GDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred cCchhhhhcCccccchhHHHH
Confidence 99999 999999999987655
No 196
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.91 E-value=0.0044 Score=55.90 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=64.2
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc------------------------ee--------
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD------------------------HK-------- 103 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd------------------------~~-------- 103 (171)
++.|++.+++++|+++|+++.++|+.+. ..+....+.+|+..--. .+
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~-~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHP-ITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 5688999999999999999999999977 77888988888842100 00
Q ss_pred ---------------eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCce
Q psy4436 104 ---------------EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 104 ---------------~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~ 147 (171)
..+..-.|+.=.++.+.++-...-+.++||+.+|+.+.+++.+.
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVG 705 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIG 705 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcc
Confidence 02222233333334444444445789999999999999987753
No 197
>KOG1605|consensus
Probab=96.91 E-value=0.00053 Score=52.19 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=79.0
Q ss_pred CcEEEEeCCCCCCCceec-ccc-CCcceecCceeeccCCC--eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHH
Q psy4436 16 PKLAVFDLDHTLWPFHVY-IDV-IPPFKKIGDKVLDAGGA--IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLV 91 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l 91 (171)
-|++|+|+|+||...... ... ...|.- ...++.... -+.-.|++.++|..+.+. +.+++.|.+.. ..+..++
T Consensus 89 kk~lVLDLDeTLvHss~~~~~~~~~d~~~--~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~-~Ya~~v~ 164 (262)
T KOG1605|consen 89 RKTLVLDLDETLVHSSLNLKPIVNADFTV--PVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLE-VYADPLL 164 (262)
T ss_pred CceEEEeCCCcccccccccCCCCCcceee--eeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhH-HHHHHHH
Confidence 479999999999876631 100 000000 111111111 234589999999999988 99999998866 7888888
Q ss_pred HhcCc-cccccee---eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 92 DLFNW-NQHFDHK---EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 92 ~~~~l-~~~fd~~---~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
..+.- ...|... +.+. -+...|-+-+...+-+..+++.|||++.....=-+.|+..-..
T Consensus 165 D~LD~~~~i~~~RlyR~~C~-~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw 227 (262)
T KOG1605|consen 165 DILDPDRKIISHRLYRDSCT-LKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSW 227 (262)
T ss_pred HHccCCCCeeeeeecccceE-eECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCccccc
Confidence 88875 3333222 1110 0111122222345668899999999999877666677654444
No 198
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.88 E-value=0.004 Score=46.69 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=62.9
Q ss_pred cEEEEEcCCchhHHHHHHHHhcCcccccceeeEec---CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEE
Q psy4436 73 CLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP---GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 73 ~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~---~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
+-+.|.|+.-.|..++.+| +++..+|..-.+++ -.|...|++|.+++|-+.-..++|||+.....+|+..+|.++
T Consensus 177 vNvLVTs~qLVPaLaKcLL--y~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw 254 (274)
T TIGR01658 177 INVLVTSGQLIPSLAKCLL--FRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFV 254 (274)
T ss_pred eEEEEEcCccHHHHHHHHH--hccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeE
Confidence 4444444554545555443 45567787665555 456789999999999877889999999999999999999999
Q ss_pred EeCCCCcHHHH
Q psy4436 150 HVKDGMSHSVL 160 (171)
Q Consensus 150 ~v~~g~~~~~~ 160 (171)
-+.........
T Consensus 255 ~I~~h~Dl~~l 265 (274)
T TIGR01658 255 KIDLHPDSSHR 265 (274)
T ss_pred EeecCCCHHHh
Confidence 99665444433
No 199
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.87 E-value=0.0044 Score=51.66 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
++.|++.+.++.|++.|+++.++|+-.. ..+....+.+|+ | ....|..|....+.. .-....+.++||+.
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~-~~a~~ia~~lgi---~--~~~~p~~K~~~v~~l----~~~g~~v~~vGDg~ 416 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNV-LTAKAIAKELGI---F--ARVTPEEKAALVEAL----QKKGRVVAMTGDGV 416 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHcCc---e--eccCHHHHHHHHHHH----HHCCCEEEEECCCh
Confidence 5688999999999999999999999877 777878888886 1 122233334334443 22337799999999
Q ss_pred ccccccccCCc
Q psy4436 136 RNSHDVSPLGV 146 (171)
Q Consensus 136 ~di~~a~~~G~ 146 (171)
+|..+.+.+++
T Consensus 417 nD~~al~~Adv 427 (499)
T TIGR01494 417 NDAPALKKADV 427 (499)
T ss_pred hhHHHHHhCCC
Confidence 99988877664
No 200
>KOG3189|consensus
Probab=96.87 E-value=0.0034 Score=45.68 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=34.7
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
++.||+||||+. ...+..|.+.+.|+.|+.. +.++++-++..
T Consensus 13 l~lfdvdgtLt~-----------------------~r~~~~~e~~~~l~~lr~~-v~ig~VggsDl 54 (252)
T KOG3189|consen 13 LCLFDVDGTLTP-----------------------PRQKVTPEMLEFLQKLRKK-VTIGFVGGSDL 54 (252)
T ss_pred EEEEecCCcccc-----------------------ccccCCHHHHHHHHHHhhh-eEEEEeecHHH
Confidence 678899999965 2445689999999999877 99999998754
No 201
>KOG2116|consensus
Probab=96.83 E-value=0.0039 Score=52.58 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=73.9
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCC--chhHHHHHHHHhc
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRT--TEMLRAHQLVDLF 94 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~--~~~~~~~~~l~~~ 94 (171)
|+||=|+|||++.+-+..++- -..+... ..-||..+....+++||++..+|.+ .+....++.|..+
T Consensus 531 kIVISDIDGTITKSDvLGh~l-----------p~iGkDW-Th~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv 598 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHVL-----------PMIGKDW-THTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNV 598 (738)
T ss_pred cEEEecCCCceEhhhhhhhhh-----------hhhcCcc-hhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHH
Confidence 688899999998755544321 1111122 2578999999999999999999975 2235566666665
Q ss_pred Ccccc--------------ccee---eEecCC---cHHHHHHHHHHhCCCCCcEE-EEcCCcccccccccCCceE
Q psy4436 95 NWNQH--------------FDHK---EIFPGQ---KTTHFANLKKATGIEYKDMV-FFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 95 ~l~~~--------------fd~~---~~~~~~---k~~~~~~~~~~~~~~~~~~l-~vgD~~~di~~a~~~G~~~ 148 (171)
.-..+ |... .+..+| |.+.+.-+.+-+.-+.+-.. -||.+..|+..-+++|+..
T Consensus 599 ~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 599 EQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPL 673 (738)
T ss_pred hhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCc
Confidence 43321 1111 111233 22444444444442333333 3999999999999999853
No 202
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0057 Score=54.68 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=70.6
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc---eee--------------------EecCCc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD---HKE--------------------IFPGQK 110 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd---~~~--------------------~~~~~k 110 (171)
.-++.++++++++.|+++|+++.++|+-.. ..+..+.+.+|+..--. .++ .+..-.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~-~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHV-ETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCH-HHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 457889999999999999999999999866 88888999998664321 111 111222
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 111 TTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
|+.=.++.+.++-.-.-+.|.||+.||+.+-+++.+-......|
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~G 667 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEG 667 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccH
Confidence 43334444445545577999999999999999987654333333
No 203
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.68 E-value=0.0036 Score=55.63 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=45.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
++++||+||||.+....... . ...+ ......+.|++.++|+.|.+. +-.++|+|+.+. +....++...+
T Consensus 592 RLlfLDyDGTLap~~~~P~~-----~-~~~~---~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~-~~Le~~fg~~~ 661 (934)
T PLN03064 592 RLLILGFNATLTEPVDTPGR-----R-GDQI---KEMELRLHPELKEPLRALCSDPKTTIVVLSGSDR-SVLDENFGEFD 661 (934)
T ss_pred eEEEEecCceeccCCCCccc-----c-cccc---cccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCH-HHHHHHhCCCC
Confidence 58888999999874322110 0 0000 001234668899999999875 688999999988 66776776643
No 204
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.62 E-value=0.0043 Score=54.59 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHHHHHHh
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
++++||+||||.+...... ......+.|++.++|++|.+. +-.++|+|+++. +....++..
T Consensus 508 rll~LDyDGTL~~~~~~~~---------------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~-~~L~~~~~~ 569 (797)
T PLN03063 508 RLLILGFYGTLTEPRNSQI---------------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGK-DILDKNFGE 569 (797)
T ss_pred eEEEEecCccccCCCCCcc---------------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCH-HHHHHHhCC
Confidence 5888999999986332110 011345678899999999875 788999999988 666767765
No 205
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.40 E-value=0.0011 Score=48.27 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.3
Q ss_pred cEEEEeCCCCCCCcee
Q psy4436 17 KLAVFDLDHTLWPFHV 32 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~ 32 (171)
++|+||+||||+|+..
T Consensus 1 ~~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 1 QALVLDMDGVMADVSQ 16 (197)
T ss_pred CceEEecCceEEechH
Confidence 3699999999998653
No 206
>KOG0202|consensus
Probab=96.12 E-value=0.026 Score=49.30 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=69.2
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc-------------ee------------eEecCC
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD-------------HK------------EIFPGQ 109 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd-------------~~------------~~~~~~ 109 (171)
-+|.|++.+.++.+++.|+++.++|+-+. ..+..+.+..|+...-+ .. ..+..-
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~-~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNK-ETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCH-HHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 46789999999999999999999999877 88888999998765222 11 011122
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
.|++=.++.+.++-.-+=+.|-||+.+|-.+.+++.+
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdI 698 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADI 698 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhccc
Confidence 3555566666666666778999999999999888765
No 207
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0077 Score=42.63 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=56.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCch--hHHHHHHHHhcCcccccceeeEec-CCcHHHHHHHHHHhCCCCCcEEEEc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTE--MLRAHQLVDLFNWNQHFDHKEIFP-GQKTTHFANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~--~~~~~~~l~~~~l~~~fd~~~~~~-~~k~~~~~~~~~~~~~~~~~~l~vg 132 (171)
.+-.++...|..|++++ +++.+|..-. ......++..-++. |+..++.. ..|.+ ..+.++++ +|+.
T Consensus 72 l~~q~v~~~L~~~~e~~-~L~~itar~~dl~~iT~~~l~~q~ih--~~~l~i~g~h~KV~----~vrth~id----lf~e 140 (194)
T COG5663 72 LLAQLVKQVLPSLKEEH-RLIYITARKADLTRITYAWLFIQNIH--YDHLEIVGLHHKVE----AVRTHNID----LFFE 140 (194)
T ss_pred HHHHHHHHHhHHHHhhc-eeeeeehhhHHHHHHHHHHHHHhccc--hhhhhhhcccccch----hhHhhccC----cccc
Confidence 34557888888888884 4555554322 13344455554444 56554433 22332 23445554 7899
Q ss_pred CCccc-ccccccCCceEEEeCCCCcHH
Q psy4436 133 DEERN-SHDVSPLGVTCIHVKDGMSHS 158 (171)
Q Consensus 133 D~~~d-i~~a~~~G~~~i~v~~g~~~~ 158 (171)
|+..+ +..|+++|++.+++...++.+
T Consensus 141 d~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 141 DSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred ccCchHHHHHHhcCCcEEEecCccccc
Confidence 99986 677777999999997655533
No 208
>KOG2470|consensus
Probab=96.08 E-value=0.0072 Score=47.69 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=65.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc---CcccccceeeE-ecCCc---------------------
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF---NWNQHFDHKEI-FPGQK--------------------- 110 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~---~l~~~fd~~~~-~~~~k--------------------- 110 (171)
...|....++.+|+++|.++.++||++. .++..-+..+ .+.+.||.+.. ..||+
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPy-sFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~w 318 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPY-SFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLW 318 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCch-hhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhh
Confidence 3456677889999999999999999988 6665444443 34456665511 11110
Q ss_pred -------------HHHHHHHHHHhCCCCCcEEEEcCCcc-cccccc-cCCceEEEe
Q psy4436 111 -------------TTHFANLKKATGIEYKDMVFFDDEER-NSHDVS-PLGVTCIHV 151 (171)
Q Consensus 111 -------------~~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~-~~G~~~i~v 151 (171)
-......++-.+..-.+++||||... |+.... +.||.+-++
T Consensus 319 dkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAI 374 (510)
T KOG2470|consen 319 DKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAI 374 (510)
T ss_pred hhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccc
Confidence 02245566667888889999999998 876665 789877666
No 209
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.95 E-value=0.045 Score=49.81 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=36.9
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
++.|++.++++.|++.|+++.++|+-+. ..+....+.+|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~-~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNP-LTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCH-HHHHHHHHHcCCC
Confidence 5789999999999999999999999866 7888888888884
No 210
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.75 E-value=0.026 Score=42.67 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=53.3
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc----------ccc---eeeEecCC------cHH-
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ----------HFD---HKEIFPGQ------KTT- 112 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~----------~fd---~~~~~~~~------k~~- 112 (171)
....+.+|+.++++.|+++++++.|+|.+-. +.....+++.+... .|| ...++..| |-+
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlg-dvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~ 165 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLG-DVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNES 165 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEH-HHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcH-HHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcc
Confidence 3577899999999999999999999998866 88888898875442 222 11333333 111
Q ss_pred HHH--HHHHHhCCCCCcEEEEcCCcccccccccC
Q psy4436 113 HFA--NLKKATGIEYKDMVFFDDEERNSHDVSPL 144 (171)
Q Consensus 113 ~~~--~~~~~~~~~~~~~l~vgD~~~di~~a~~~ 144 (171)
.+. ...+++ -...+++.+||+..|+.+|..+
T Consensus 166 ~l~~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 166 ALEDSPYFKQL-KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HHTTHHHHHCT-TT--EEEEEESSSGGGGTTTT-
T ss_pred cccCchHHHHh-ccCCcEEEecCccCChHhhcCC
Confidence 111 111111 1356899999999999998776
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.058 Score=44.90 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=67.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
...||.++-+.+|++.|++.+.||+-+. -.+..+.+..|+++|.-. . +|+-=....++.+-.-+=+.|.||+.
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~-~TAa~IA~EAGVDdfiAe--a----tPEdK~~~I~~eQ~~grlVAMtGDGT 519 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNP-LTAAAIAAEAGVDDFIAE--A----TPEDKLALIRQEQAEGRLVAMTGDGT 519 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCH-HHHHHHHHHhCchhhhhc--C----ChHHHHHHHHHHHhcCcEEEEcCCCC
Confidence 3578999999999999999999999876 677778888898866422 2 34333444455666667788999999
Q ss_pred ccccccccCCceEEEeCCCC
Q psy4436 136 RNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 136 ~di~~a~~~G~~~i~v~~g~ 155 (171)
+|-.+..++.+ .+..+.|+
T Consensus 520 NDAPALAqAdV-g~AMNsGT 538 (681)
T COG2216 520 NDAPALAQADV-GVAMNSGT 538 (681)
T ss_pred Ccchhhhhcch-hhhhcccc
Confidence 99887777663 23445554
No 212
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.54 E-value=0.018 Score=43.68 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=68.0
Q ss_pred EEEeCCCCCCCceeccccC-CcceecCceeeccCCCeee----eCCCHHHHHHHHhhC------CcEEEEEcCCchhHHH
Q psy4436 19 AVFDLDHTLWPFHVYIDVI-PPFKKIGDKVLDAGGAIIK----YYRDVPAILKYLKQN------NCLVAAASRTTEMLRA 87 (171)
Q Consensus 19 vvfDlDgTL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~L~~~------g~~i~i~S~~~~~~~~ 87 (171)
|.||.|++|.+.+.....- ..+.... -.+......+ ++......|.+|++. -++++++|.++.|...
T Consensus 124 IAFDgDaVLfsDesE~vy~~~GL~~F~--~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~ 201 (264)
T PF06189_consen 124 IAFDGDAVLFSDESERVYQEQGLEAFH--EHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHE 201 (264)
T ss_pred EEEcCCeEeecCcchHhHHhccHHHHH--HHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhH
Confidence 8999999998766542110 0000000 0000001111 233344555555543 4889999987665443
Q ss_pred H--HHHHhcCcccccceeeE-ecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 88 H--QLVDLFNWNQHFDHKEI-FPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 88 ~--~~l~~~~l~~~fd~~~~-~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
+ .-|+..|+. .|..-. ..-+|.. +++.++- =+||||...++..|. .++.+.+|+.|..
T Consensus 202 RvI~TLr~Wgv~--vDEafFLgG~~K~~----vL~~~~p----hIFFDDQ~~H~~~a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 202 RVIRTLRSWGVR--VDEAFFLGGLPKGP----VLKAFRP----HIFFDDQDGHLESAS-KVVPSGHVPYGVA 262 (264)
T ss_pred HHHHHHHHcCCc--HhHHHHhCCCchhH----HHHhhCC----CEeecCchhhhhHhh-cCCCEEeccCCcC
Confidence 3 133344544 332211 1133432 2333432 389999999999999 6899999988764
No 213
>KOG3107|consensus
Probab=95.53 E-value=0.054 Score=43.24 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=64.4
Q ss_pred cEEEEEcCC-chhHHHHHHHHhcCcccccceeeEec---CCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceE
Q psy4436 73 CLVAAASRT-TEMLRAHQLVDLFNWNQHFDHKEIFP---GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 73 ~~i~i~S~~-~~~~~~~~~l~~~~l~~~fd~~~~~~---~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~ 148 (171)
+.=+++|+. -.|..++-+| .||...|....+++ --|-..|++|.+++|- .-.-+.|||+.....+|++..|.+
T Consensus 371 cvnVlvTttqLipalaKvLL--~gLg~~fpiENIYSa~kiGKescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~Pf 447 (468)
T KOG3107|consen 371 CVNVLVTTTQLIPALAKVLL--YGLGSSFPIENIYSATKIGKESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPF 447 (468)
T ss_pred eeEEEEeccchhHHHHHHHH--HhcCCcccchhhhhhhhccHHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCce
Confidence 334555554 2333333333 45556676555554 3456889999999997 456777999999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHH
Q psy4436 149 IHVKDGMSHSVLHKGLKQ 166 (171)
Q Consensus 149 i~v~~g~~~~~~~~~~~~ 166 (171)
+-+........+..+|+.
T Consensus 448 wrI~~h~Dl~~l~~aL~~ 465 (468)
T KOG3107|consen 448 WRISSHSDLDALYSALEL 465 (468)
T ss_pred EeeccCccHHHHhhhccc
Confidence 999877777777777653
No 214
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.26 E-value=0.019 Score=42.89 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHHHhCC--CCCcEEEEcCCcccccccccCCceEE
Q psy4436 108 GQKTTHFANLKKATGI--EYKDMVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~--~~~~~l~vgD~~~di~~a~~~G~~~i 149 (171)
-.|+...+.+++.+++ ++.++++|||+.+|+.+.+.+|...+
T Consensus 180 ~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 180 SDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 4566778888888866 67789999999999999999997543
No 215
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.083 Score=41.37 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=64.8
Q ss_pred EEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCC-cEEEEEcCCchhHHHH---HHHHh
Q psy4436 18 LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNN-CLVAAASRTTEMLRAH---QLVDL 93 (171)
Q Consensus 18 ~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g-~~i~i~S~~~~~~~~~---~~l~~ 93 (171)
.+|=|+|+|+...++....-. ....+. .......++|||..+.+.|.+.| .++..+||++. ..-. +++..
T Consensus 163 giISDiDDTV~~T~V~~~~r~----~~~s~~-l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw-~~f~~L~efi~~ 236 (373)
T COG4850 163 GIISDIDDTVKVTGVTEGPRK----AGRSLL-LHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPW-QLFPTLQEFITN 236 (373)
T ss_pred eeeeccccceEecccccchHH----HHHHhh-hcccccCCCCCHHHHHHHHHhcCCCCeEEecCChh-HhHHHHHHHHhc
Confidence 367799999987666532100 000000 01224578999999999999998 89999999876 4433 22222
Q ss_pred cCccc----------ccceee-EecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-cc
Q psy4436 94 FNWNQ----------HFDHKE-IFPGQKTTHFANLKKATGIEYKDMVFFDDEER-NS 138 (171)
Q Consensus 94 ~~l~~----------~fd~~~-~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-di 138 (171)
.++.. .|+.+. ....-|......+++++ +-...+.|||+-. |.
T Consensus 237 ~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~--p~~kfvLVGDsGE~Dp 291 (373)
T COG4850 237 RNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRY--PDRKFVLVGDSGEHDP 291 (373)
T ss_pred CCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhC--CCceEEEecCCCCcCH
Confidence 23331 112210 01122334456566655 4567888888766 53
No 216
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=95.17 E-value=0.023 Score=46.12 Aligned_cols=122 Identities=16% Similarity=0.079 Sum_probs=70.7
Q ss_pred cCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch--hHHHHHHH
Q psy4436 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE--MLRAHQLV 91 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~--~~~~~~~l 91 (171)
...++||+|+||||+.+-+..++. .-.+ ..=-.-||..+--...++||+|..+|.++. ....+..+
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~-----------~miG-kdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsyl 440 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVK-----------QMIG-KDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYL 440 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHH-----------HHhc-cchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHH
Confidence 346899999999998654432210 0011 111246788888888899999999887543 12333333
Q ss_pred HhcCccccc--ce-e--------------eEecCCcH--HHHHHHHHHhCCCCCcEE-EEcCCcccccccccCCce
Q psy4436 92 DLFNWNQHF--DH-K--------------EIFPGQKT--THFANLKKATGIEYKDMV-FFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 92 ~~~~l~~~f--d~-~--------------~~~~~~k~--~~~~~~~~~~~~~~~~~l-~vgD~~~di~~a~~~G~~ 147 (171)
....-..|- +. + .+..+|.. ..|..-++.+...+.-.. =||.+..|+.+-+.+|+.
T Consensus 441 rnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 441 RNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccchhheeeccccCC
Confidence 332222211 10 0 01123332 334555566666666544 489999999999999974
No 217
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=94.95 E-value=0.15 Score=46.47 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=34.7
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
-++.|++.++++.|++.|+++.++|+-.. ..+.......++.
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~-~TA~~IA~~~~ii 671 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKV-ETAINIGYSCRLL 671 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcH-HHHHHHHHHhCCC
Confidence 35789999999999999999999999765 6777676666654
No 218
>KOG2469|consensus
Probab=94.34 E-value=0.26 Score=39.81 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=66.1
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh---cCcccccceeeEec-CCc----------------------
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL---FNWNQHFDHKEIFP-GQK---------------------- 110 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~---~~l~~~fd~~~~~~-~~k---------------------- 110 (171)
..+.....|..+++.|.+..+.||+.. ......+.. .++..+|+.+.... ||+
T Consensus 199 ~d~~~v~~l~~~r~sGKk~fl~Tns~~-~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~ 277 (424)
T KOG2469|consen 199 YDGTIVPLLSMLRDSGKKTFLHTNSDW-DYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGD 277 (424)
T ss_pred ecCccccchHHHHhhccceEEeecccc-chhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccc
Confidence 344455589999999999999999866 555444444 35666776653221 221
Q ss_pred ------------HHHHHHHHHHhCCCCCcEEEEcCCcc-cc-cccccCCceEEEeCCC
Q psy4436 111 ------------TTHFANLKKATGIEYKDMVFFDDEER-NS-HDVSPLGVTCIHVKDG 154 (171)
Q Consensus 111 ------------~~~~~~~~~~~~~~~~~~l~vgD~~~-di-~~a~~~G~~~i~v~~g 154 (171)
+.....+...+++...+++|+||+.+ |+ ..-+..|+.++++...
T Consensus 278 ~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 278 NTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred cCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 12345556677888899999999999 64 4555589999988553
No 219
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.68 E-value=0.033 Score=40.51 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=13.7
Q ss_pred CcEEEEeCCCCCCCcee
Q psy4436 16 PKLAVFDLDHTLWPFHV 32 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~ 32 (171)
+++|+||.||||+....
T Consensus 1 i~~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKM 17 (215)
T ss_dssp ESEEEEECCTTTBESHH
T ss_pred CeEEEEecCCCcccCeE
Confidence 47899999999986443
No 220
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.68 E-value=0.21 Score=37.46 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=31.1
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
...++.||+.+.++.|.+. +.-.++|.+-. +.++.....+|++.
T Consensus 80 ~sa~lvPgA~etm~~l~~~-~tp~v~STSY~-qy~~r~a~~ig~Pr 123 (315)
T COG4030 80 LSAKLVPGAEETMATLQER-WTPVVISTSYT-QYLRRTASMIGVPR 123 (315)
T ss_pred hhcccCCChHHHHHHHhcc-CCceEEeccHH-HHHHHHHHhcCCCc
Confidence 3467899999999999988 44445555434 66676777777743
No 221
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=93.64 E-value=0.39 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCC-chhHHHHHHHHhcC
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRT-TEMLRAHQLVDLFN 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~-~~~~~~~~~l~~~~ 95 (171)
.+.++||||.|+...+.. .-...++++.+.+.|.++.|+|.- +-|+.++.+-..++
T Consensus 44 giAildL~G~~l~l~S~R-----------------------~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~ 100 (138)
T PF04312_consen 44 GIAILDLDGELLDLKSSR-----------------------NMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFN 100 (138)
T ss_pred EEEEEecCCcEEEEEeec-----------------------CCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhC
Confidence 578999999997754432 234678999999999999999963 44577776655555
Q ss_pred cc
Q psy4436 96 WN 97 (171)
Q Consensus 96 l~ 97 (171)
-.
T Consensus 101 A~ 102 (138)
T PF04312_consen 101 AV 102 (138)
T ss_pred Cc
Confidence 44
No 222
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=93.58 E-value=0.04 Score=39.43 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.7
Q ss_pred EEEeCCCCCCCce
Q psy4436 19 AVFDLDHTLWPFH 31 (171)
Q Consensus 19 vvfDlDgTL~~~~ 31 (171)
++||+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999866
No 223
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=93.51 E-value=0.27 Score=38.26 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=29.6
Q ss_pred eeeeCCCHHHHHHHHhhCC-cEEEEEcCCchhHHHH
Q psy4436 54 IIKYYRDVPAILKYLKQNN-CLVAAASRTTEMLRAH 88 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g-~~i~i~S~~~~~~~~~ 88 (171)
+-.++|...++++.+|+.| ++++++||+..++..+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~ 125 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLE 125 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHH
Confidence 4566999999999999999 7999999998855444
No 224
>KOG0209|consensus
Probab=93.31 E-value=0.36 Score=42.59 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=34.8
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
.+++.|+.+..|++|.+.+.+++.+|+-+- -.+....+.+++..
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnp-LTAchVak~v~iv~ 716 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNP-LTACHVAKEVGIVE 716 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCc-cchheehheeeeec
Confidence 356789999999999999999999998654 55555666666654
No 225
>KOG2832|consensus
Probab=92.13 E-value=0.96 Score=36.12 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+=.+|+||.++|+...+.-. .+-.+.-.||+.-+|..+- ..+.|++.|.... ..+..++++++
T Consensus 189 ~yTLVleledvLVhpdws~~---------------tGwRf~kRPgvD~FL~~~a-~~yEIVi~sse~g-mt~~pl~d~lD 251 (393)
T KOG2832|consen 189 PYTLVLELEDVLVHPDWSYK---------------TGWRFKKRPGVDYFLGHLA-KYYEIVVYSSEQG-MTVFPLLDALD 251 (393)
T ss_pred CceEEEEeeeeEeccchhhh---------------cCceeccCchHHHHHHhhc-ccceEEEEecCCc-cchhhhHhhcC
Confidence 34799999999986544311 2345666899999999998 5599999999876 77787899988
Q ss_pred cccccceeeEe--cCC-cHHHHHHHHHHhCCCCCcEEEEcCCcc
Q psy4436 96 WNQHFDHKEIF--PGQ-KTTHFANLKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 96 l~~~fd~~~~~--~~~-k~~~~~~~~~~~~~~~~~~l~vgD~~~ 136 (171)
-..+..+.-.. .+- .+.+ .+=+.++|=++..+++|+=..+
T Consensus 252 P~g~IsYkLfr~~t~y~~G~H-vKdls~LNRdl~kVivVd~d~~ 294 (393)
T KOG2832|consen 252 PKGYISYKLFRGATKYEEGHH-VKDLSKLNRDLQKVIVVDFDAN 294 (393)
T ss_pred CcceEEEEEecCcccccCccc-hhhhhhhccccceeEEEEcccc
Confidence 77555444111 111 1122 2235678889999999987666
No 226
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=91.53 E-value=2.7 Score=38.44 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHhCCCCCcE-EEEcCCcc-cccccccCCc-eEEEeCC
Q psy4436 108 GQKTTHFANLKKATGIEYKDM-VFFDDEER-NSHDVSPLGV-TCIHVKD 153 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~-l~vgD~~~-di~~a~~~G~-~~i~v~~ 153 (171)
-.|...++++..+++++.+++ +|+||+-+ |...... |. .++.++.
T Consensus 955 ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~-G~~~tvi~~g 1002 (1050)
T TIGR02468 955 ASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLG-GLHKTVILKG 1002 (1050)
T ss_pred CCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhC-CceeEEEEec
Confidence 346788999999999999999 66999999 9665533 54 4555544
No 227
>KOG0204|consensus
Probab=90.99 E-value=1.2 Score=39.58 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=61.8
Q ss_pred CCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc---eeeE--------------ec------C
Q psy4436 52 GAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD---HKEI--------------FP------G 108 (171)
Q Consensus 52 ~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd---~~~~--------------~~------~ 108 (171)
+-+-+..|||+++++..+..|+.+..+|+.+. ..++.+....|+...=+ .+++ +| .
T Consensus 643 GIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI-~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlAR 721 (1034)
T KOG0204|consen 643 GIKDPVRPGVPEAVQLCQRAGITVRMVTGDNI-NTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLAR 721 (1034)
T ss_pred eccCCCCCCcHHHHHHHHHcCcEEEEEeCCcH-HHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeec
Confidence 34557789999999999999999999999888 88888888888764221 1111 11 1
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCce
Q psy4436 109 QKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVT 147 (171)
Q Consensus 109 ~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~ 147 (171)
..|.-=+.+.+.+.-.-+-+..-||+.+|-.+.+++.+-
T Consensus 722 SSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVG 760 (1034)
T KOG0204|consen 722 SSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVG 760 (1034)
T ss_pred CCCchHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccc
Confidence 111101111122222223455679999999999987653
No 228
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.73 E-value=2.3 Score=32.28 Aligned_cols=100 Identities=10% Similarity=-0.013 Sum_probs=66.6
Q ss_pred cCCCeeeeCCCHHHHHHHHhhC---CcEEE-EEcCCchhHHHHHHHHhcCcccccc--e-e-eEecCCcHHHHHHHHHHh
Q psy4436 50 AGGAIIKYYRDVPAILKYLKQN---NCLVA-AASRTTEMLRAHQLVDLFNWNQHFD--H-K-EIFPGQKTTHFANLKKAT 121 (171)
Q Consensus 50 ~~~~~~~~~~~v~~~l~~L~~~---g~~i~-i~S~~~~~~~~~~~l~~~~l~~~fd--~-~-~~~~~~k~~~~~~~~~~~ 121 (171)
-.++...++|+..++++..++. |+.+. +|++.. ..++ .+..+|-..... . + ....-..++.++.+.+..
T Consensus 98 Vi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~--~~ar-~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~ 174 (248)
T cd04728 98 VIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDP--VLAK-RLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA 174 (248)
T ss_pred EecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHH-HHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC
Confidence 3445667889999988777766 99999 777764 4444 666666443221 0 1 111122467777776653
Q ss_pred CCCCCcEEEEcCCcc---cccccccCCceEEEeCCCCc
Q psy4436 122 GIEYKDMVFFDDEER---NSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~g~~ 156 (171)
+ --+++|-+.. |+..|-++|...+.+..+..
T Consensus 175 ~----vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 175 D----VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred C----CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 3 3477777665 88999999999999988765
No 229
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.36 E-value=2.5 Score=32.13 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=65.6
Q ss_pred CCCeeeeCCCHHHHHHHHhhC---CcEEE-EEcCCchhHHHHHHHHhcCcccccc--e-e-eEecCCcHHHHHHHHHHhC
Q psy4436 51 GGAIIKYYRDVPAILKYLKQN---NCLVA-AASRTTEMLRAHQLVDLFNWNQHFD--H-K-EIFPGQKTTHFANLKKATG 122 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l~~L~~~---g~~i~-i~S~~~~~~~~~~~l~~~~l~~~fd--~-~-~~~~~~k~~~~~~~~~~~~ 122 (171)
.++...++|+..++++..++. |+.+. +|++... .++ .+..+|-..... . + ...+-..++.++.+.+..+
T Consensus 99 i~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~--~ak-~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 99 IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV--LAK-RLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQAD 175 (250)
T ss_pred ecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHH-HHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcC
Confidence 444566788888888777766 99999 8887643 444 666766443211 0 1 1111224666676666543
Q ss_pred CCCCcEEEEcCCcc---cccccccCCceEEEeCCCCc
Q psy4436 123 IEYKDMVFFDDEER---NSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 123 ~~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~g~~ 156 (171)
--+.+|-+.. |+..|-++|...+.+..+..
T Consensus 176 ----vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 176 ----VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred ----CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 3477887766 88899999999999988765
No 230
>KOG0210|consensus
Probab=90.10 E-value=0.7 Score=40.15 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=56.7
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc-------------------------------------
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ------------------------------------- 98 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~------------------------------------- 98 (171)
++.++|+..|+.|++.|+++..+|+--. +.+....+..++-.
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKl-ETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~ 736 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKL-ETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGE 736 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcch-hheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCc
Confidence 4567888899999999999999999644 44443444433332
Q ss_pred ------------ccc------eeeEe---cCCcHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCc
Q psy4436 99 ------------HFD------HKEIF---PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 99 ------------~fd------~~~~~---~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~ 146 (171)
+++ .+..+ |..|....+.+.++.+ ..+..|||+-+|+.+.+++.+
T Consensus 737 Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~---krvc~IGDGGNDVsMIq~A~~ 802 (1051)
T KOG0210|consen 737 SLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTG---KRVCAIGDGGNDVSMIQAADV 802 (1051)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhC---ceEEEEcCCCccchheeeccc
Confidence 111 11111 2445555555555554 788899999999888777553
No 231
>PRK08005 epimerase; Validated
Probab=89.48 E-value=2.5 Score=31.34 Aligned_cols=110 Identities=8% Similarity=-0.004 Sum_probs=65.0
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
+...++|+.+|+.|.+.+++=|...+ +.....+...+.--....--++. +--+..++++.+--...++.-+-||-+.
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI 172 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI 172 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC
Confidence 45678999999999999998875332 33444444433221111111122 2234556666653333333248888888
Q ss_pred c--cccccccCCceEEEeCCC-CcHHHHHHHHHHhh
Q psy4436 136 R--NSHDVSPLGVTCIHVKDG-MSHSVLHKGLKQWA 168 (171)
Q Consensus 136 ~--di~~a~~~G~~~i~v~~g-~~~~~~~~~~~~~~ 168 (171)
+ ++....++|+..+.+..+ +..+...+.+++|.
T Consensus 173 ~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 173 TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 8 677888899987777543 23334566666664
No 232
>KOG3128|consensus
Probab=87.85 E-value=1.9 Score=32.85 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=53.4
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc-Cccc--cc-------c--ee-eEecCCcH-------HHH
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF-NWNQ--HF-------D--HK-EIFPGQKT-------THF 114 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~-~l~~--~f-------d--~~-~~~~~~k~-------~~~ 114 (171)
..+.+|..++...|+++++++.|.|.+-. +....++... ++.. +| + .. ..+..|-- ...
T Consensus 137 i~lReg~~~ff~~L~~~~IP~~iFSAGig-diiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 137 IALREGYEEFFEALQAHEIPLLIFSAGIG-DIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecchH-HHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 34567899999999999999999998755 5555555543 2221 11 1 10 11221111 112
Q ss_pred HHHHHHhC--CCCCcEEEEcCCcccccccccC
Q psy4436 115 ANLKKATG--IEYKDMVFFDDEERNSHDVSPL 144 (171)
Q Consensus 115 ~~~~~~~~--~~~~~~l~vgD~~~di~~a~~~ 144 (171)
+...+.+. -....+++.||+..|+.+|.-+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 22222222 3456899999999999887653
No 233
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=87.70 E-value=5.6 Score=29.68 Aligned_cols=112 Identities=4% Similarity=0.025 Sum_probs=66.9
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHhCCCC---CcEEE
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKATGIEY---KDMVF 130 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~~~~~---~~~l~ 130 (171)
..+...++|+.+|+.|++.+++=|-..| +....+++.+++--..+.--++. +--++.++++.+--..-. +-.+-
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~Ie 173 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIE 173 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEE
Confidence 5678889999999999999988875332 55566676666543222212222 222444555443222211 34566
Q ss_pred EcCCcc--cccccccCCceEEEeCCC-CcHHHHHHHHHHhh
Q psy4436 131 FDDEER--NSHDVSPLGVTCIHVKDG-MSHSVLHKGLKQWA 168 (171)
Q Consensus 131 vgD~~~--di~~a~~~G~~~i~v~~g-~~~~~~~~~~~~~~ 168 (171)
||-+.+ .+..+.++|...+....+ +....+...++.|.
T Consensus 174 VDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~ 214 (220)
T COG0036 174 VDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELR 214 (220)
T ss_pred EeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHH
Confidence 887777 577778899987777442 33333555555554
No 234
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=85.82 E-value=6.7 Score=33.29 Aligned_cols=88 Identities=7% Similarity=-0.034 Sum_probs=53.8
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCccccc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSH 139 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~ 139 (171)
++..+|+..++.+-++++++..+....++.+.+-+++. +. .+.-...+-....++++.-. .--++|||... +.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~---~~~~~~~~e~~~~~~~l~~~-G~~~viG~~~~-~~ 157 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IV---QRSYVTEEDARSCVNDLRAR-GIGAVVGAGLI-TD 157 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eE---EEEecCHHHHHHHHHHHHHC-CCCEEECChHH-HH
Confidence 45666666677778899998765545566566666655 22 22211222233333333221 12467899965 68
Q ss_pred ccccCCceEEEeCCC
Q psy4436 140 DVSPLGVTCIHVKDG 154 (171)
Q Consensus 140 ~a~~~G~~~i~v~~g 154 (171)
.|++.|++++.+..+
T Consensus 158 ~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 158 LAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHcCCceEEEecH
Confidence 889999999999765
No 235
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=85.62 E-value=8.3 Score=27.58 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=28.6
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHH
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAH 88 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~ 88 (171)
.+..+.+.+.++++.+++.|+.+.+.||...++...
T Consensus 71 GEPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~ 106 (191)
T TIGR02495 71 GEPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLE 106 (191)
T ss_pred CcccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHH
Confidence 344556779999999999999999999997644444
No 236
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=84.24 E-value=0.59 Score=39.20 Aligned_cols=80 Identities=9% Similarity=0.021 Sum_probs=48.7
Q ss_pred HHHHHhhCCcEEEEEcCCchhHHHHHHHHh-cCcccccc--------ee-eE-ecCCc----HHHHHHHHHHhCCCCCcE
Q psy4436 64 ILKYLKQNNCLVAAASRTTEMLRAHQLVDL-FNWNQHFD--------HK-EI-FPGQK----TTHFANLKKATGIEYKDM 128 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~-~~l~~~fd--------~~-~~-~~~~k----~~~~~~~~~~~~~~~~~~ 128 (171)
.++.++++|.. +++|.++. ..++.+.+. +|++.... .. .+ ...+. .+-...+.+.++.+...
T Consensus 115 a~~~~~~~g~~-vvVSASp~-~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g~~~~~- 191 (497)
T PLN02177 115 TWRVFNSFGKR-YIITASPR-IMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPD- 191 (497)
T ss_pred HHHHHHhCCCE-EEEECCcH-HHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhCCCCce-
Confidence 34455667765 99999988 788888865 67774321 11 00 01111 11233333556654444
Q ss_pred EEEcCCcccccccccCCc
Q psy4436 129 VFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 129 l~vgD~~~di~~a~~~G~ 146 (171)
++.||+..|......++-
T Consensus 192 ~aYgDS~sD~plL~~a~e 209 (497)
T PLN02177 192 LGLGDRETDHDFMSICKE 209 (497)
T ss_pred EEEECCccHHHHHHhCCc
Confidence 899999999988888773
No 237
>KOG0323|consensus
Probab=83.11 E-value=5.2 Score=34.57 Aligned_cols=85 Identities=16% Similarity=0.057 Sum_probs=57.4
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc-ccceeeEecCCcHHHHHHHHHHhCCCCC---cEE
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ-HFDHKEIFPGQKTTHFANLKKATGIEYK---DMV 129 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~-~fd~~~~~~~~k~~~~~~~~~~~~~~~~---~~l 129 (171)
-+++.|++.++|+++.+. +.+.|+|-+.+ ..+..+++-+.-.. ||.......+..+ +.+...-....|. -++
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R-~YA~~i~~liDP~~~lF~dRIisrde~~--~~kt~dL~~~~p~g~smvv 274 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTR-DYALEIAKLIDPEGKYFGDRIISRDESP--FFKTLDLVLLFPCGDSMVV 274 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccch-HHHHHHHHHhCCCCccccceEEEecCCC--cccccccccCCCCCCccEE
Confidence 468899999999999988 99999999988 88887877776553 6665434444333 3333332233333 388
Q ss_pred EEcCCcccccccc
Q psy4436 130 FFDDEERNSHDVS 142 (171)
Q Consensus 130 ~vgD~~~di~~a~ 142 (171)
.|+|+..--.-..
T Consensus 275 IIDDr~dVW~~~~ 287 (635)
T KOG0323|consen 275 IIDDRSDVWPDHK 287 (635)
T ss_pred EEeCccccccCCC
Confidence 8888876444444
No 238
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=82.58 E-value=9.2 Score=28.61 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=55.0
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHH--Hh-C-CCCCcEEEE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKK--AT-G-IEYKDMVFF 131 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~--~~-~-~~~~~~l~v 131 (171)
+...++|+.+|+.|++.+++=|...+ +.....+...+.--....--++. +--+..++++.+ ++ . -.++--+.|
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV 176 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEI 176 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 45788999999999999999886432 33444444433221111111122 222333444432 11 1 123455788
Q ss_pred cCCcc--cccccccCCceEEEeCC
Q psy4436 132 DDEER--NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 132 gD~~~--di~~a~~~G~~~i~v~~ 153 (171)
+-+.+ .+....++|+..+.+..
T Consensus 177 DGGI~~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 177 DGGVKADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECh
Confidence 88887 67788889998777754
No 239
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=82.41 E-value=8.6 Score=29.89 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHhhCCcE---------EEEEcCCchhHHHHHHHHhcCcccccceeeEec-CCcHHHHHHHHHHhCCCCCc
Q psy4436 58 YRDVPAILKYLKQNNCL---------VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP-GQKTTHFANLKKATGIEYKD 127 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~---------i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~-~~k~~~~~~~~~~~~~~~~~ 127 (171)
.++..++++.|++. ++ ||.+|-+.+ +.++.+.+..++- .+.+-+ -+...-+..+.++.+. +.-
T Consensus 170 ~ddt~~Iv~~l~~r-~p~~~~~~~~~ICyAT~nRQ-~Avk~la~~~Dl~----iVVG~~nSSNs~rL~eiA~~~g~-~ay 242 (294)
T COG0761 170 VDDTAEIVAALKER-FPKIEVPPFNDICYATQNRQ-DAVKELAPEVDLV----IVVGSKNSSNSNRLAEIAKRHGK-PAY 242 (294)
T ss_pred HHHHHHHHHHHHHh-CccccCCcccccchhhhhHH-HHHHHHhhcCCEE----EEECCCCCccHHHHHHHHHHhCC-CeE
Confidence 34566777777776 44 777776655 5555555544432 111222 2234557788888887 444
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCc
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMS 156 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~ 156 (171)
.+ |+..|++..+=.|..++.++-|.+
T Consensus 243 lI---d~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 243 LI---DDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred Ee---CChHhCCHHHhcCccEEEEecCCC
Confidence 44 778899999999999999988765
No 240
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=82.17 E-value=3 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCcc-cccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEER-NSHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~-di~~a~~~G~~~i~ 150 (171)
+.|..-++.+|++|. ++-||.|... --..|+-+||.+++
T Consensus 93 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 93 ELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred HHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 789999999999876 6999999998 57888989987654
No 241
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=81.90 E-value=11 Score=27.28 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhC--CcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-
Q psy4436 60 DVPAILKYLKQN--NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER- 136 (171)
Q Consensus 60 ~v~~~l~~L~~~--g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~- 136 (171)
-+..+++.|+++ |.++.+.|.+.. . .....+.+. .... ....|-.-+...+++++.+ +|+-+++++...|
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~t-g-~~~~~~~~~--~~v~-~~~~P~D~~~~~~rfl~~~--~P~~~i~~EtElWP 108 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPT-G-REMARKLLP--DRVD-VQYLPLDFPWAVRRFLDHW--RPDLLIWVETELWP 108 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CC-H-HHHHHGG-G--GG-S-EEE---SSHHHHHHHHHHH----SEEEEES----H
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCc-h-HHHHHHhCC--CCeE-EEEeCccCHHHHHHHHHHh--CCCEEEEEccccCH
Confidence 367789999987 888888888644 2 221222221 1111 2235655677788888876 5899999999999
Q ss_pred c-ccccccCCceEEEeCC
Q psy4436 137 N-SHDVSPLGVTCIHVKD 153 (171)
Q Consensus 137 d-i~~a~~~G~~~i~v~~ 153 (171)
+ +..+++.|+..+.++.
T Consensus 109 nll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHH-----S-EEEEEE
T ss_pred HHHHHHhhcCCCEEEEee
Confidence 4 8888999999999964
No 242
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=81.68 E-value=1.9 Score=30.77 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=50.6
Q ss_pred eeCCCHHHH---HHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEc
Q psy4436 56 KYYRDVPAI---LKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 56 ~~~~~v~~~---l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vg 132 (171)
+.-...-++ |..++..+-++++++..+.......+.+.+++. +..++-..++-++..++++.-. .--++||
T Consensus 58 ~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~-----i~~~~~~~~~e~~~~i~~~~~~-G~~viVG 131 (176)
T PF06506_consen 58 EIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD-----IKIYPYDSEEEIEAAIKQAKAE-GVDVIVG 131 (176)
T ss_dssp EE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E-----EEEEEESSHHHHHHHHHHHHHT-T--EEEE
T ss_pred EECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc-----eEEEEECCHHHHHHHHHHHHHc-CCcEEEC
Confidence 344444444 455555678999998654433344455556654 2222222343455555544222 2347899
Q ss_pred CCcccccccccCCceEEEeCCCC
Q psy4436 133 DEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 133 D~~~di~~a~~~G~~~i~v~~g~ 155 (171)
+..- +..|++.|++++.+..|.
T Consensus 132 g~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 132 GGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp SHHH-HHHHHHTTSEEEESS--H
T ss_pred CHHH-HHHHHHcCCcEEEEEecH
Confidence 9865 788999999999997754
No 243
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=81.52 E-value=3.2 Score=31.55 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCcc-cccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEER-NSHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~-di~~a~~~G~~~i~ 150 (171)
+.|..-++.+|++|. ++-||.|... --..|+-+||.+++
T Consensus 89 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 89 ELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 889999999999876 6999999998 58888989987654
No 244
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=81.20 E-value=13 Score=31.71 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=53.5
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCccccc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSH 139 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~ 139 (171)
++..+|+..++.+-++++++..+....++.+.+.+++. +..............-+-+++.|+ -++|||... +.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~~e~~~~v~~lk~~G~----~~vvG~~~~-~~ 167 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTEEDARGQINELKANGI----EAVVGAGLI-TD 167 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCC----CEEEcCchH-HH
Confidence 45666666677778999999765545566566666655 222111111122222222333443 467899776 78
Q ss_pred ccccCCceEEEeCCC
Q psy4436 140 DVSPLGVTCIHVKDG 154 (171)
Q Consensus 140 ~a~~~G~~~i~v~~g 154 (171)
.|.++|+.++.+..+
T Consensus 168 ~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 168 LAEEAGMTGIFIYSA 182 (538)
T ss_pred HHHHhCCceEEecCH
Confidence 999999999999754
No 245
>PLN02334 ribulose-phosphate 3-epimerase
Probab=80.88 E-value=21 Score=26.61 Aligned_cols=108 Identities=7% Similarity=-0.003 Sum_probs=57.4
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCC--chhHHHHHHHHhcCcccccceeeEec---CC--cHHHHHHHHHHhCCCC-CcEEE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRT--TEMLRAHQLVDLFNWNQHFDHKEIFP---GQ--KTTHFANLKKATGIEY-KDMVF 130 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~--~~~~~~~~~l~~~~l~~~fd~~~~~~---~~--k~~~~~~~~~~~~~~~-~~~l~ 130 (171)
+.....++.+++.|.++++..|. +. +..+..++.-+ .+|+.....+| ++ .+..+.++.+-.+..+ ..+..
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~-~~~~~~~~~~~-~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a 179 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPV-EAVEPVVEKGL-VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV 179 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCH-HHHHHHHhccC-CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 34568889999999999999974 23 43433332211 33443222222 22 2333434332222212 23445
Q ss_pred E-cCCcccccccccCCceEEEeCCCC-cHHHHHHHHHHhh
Q psy4436 131 F-DDEERNSHDVSPLGVTCIHVKDGM-SHSVLHKGLKQWA 168 (171)
Q Consensus 131 v-gD~~~di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~~ 168 (171)
+ |=+..++....++|+..+.+..+. ..+...+.+++|.
T Consensus 180 ~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~ 219 (229)
T PLN02334 180 DGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLR 219 (229)
T ss_pred eCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 5 344558999999999988886532 2233444444443
No 246
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=80.46 E-value=3.7 Score=31.46 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCcc-cccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEER-NSHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~-di~~a~~~G~~~i~ 150 (171)
+.|..-++.+|++|. ++-||.|... --..|+-+||.+++
T Consensus 90 elYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 90 ELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred HHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 789999999999876 6999999998 57888989987654
No 247
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.83 E-value=5.8 Score=26.26 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHHHH-HhCCCCCcEEEEcCCccc-ccccccCCceEEEeCCCCcHHHHHHHHHHhhhc
Q psy4436 111 TTHFANLKK-ATGIEYKDMVFFDDEERN-SHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASK 170 (171)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~l~vgD~~~d-i~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~ 170 (171)
.--....++ ++|.. .++-.+||-..| +..++++|+.++.++.+...+.+...+.+|+..
T Consensus 35 gfS~ArlLR~r~gy~-GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~ 95 (110)
T PF06073_consen 35 GFSQARLLRERYGYT-GELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDFSVS 95 (110)
T ss_pred HhHHHHHHHHHcCCC-CcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCcc
Confidence 333556666 88986 569999999997 888999999999999999999999999988764
No 248
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.00 E-value=8.4 Score=28.72 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=52.2
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHH---HHhCC-CCCcEEEE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLK---KATGI-EYKDMVFF 131 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~---~~~~~-~~~~~l~v 131 (171)
+...++|+.+|+.|++.+++=|...| +.....++..++--+...--++. +--+..++++. +..+- .++--+.+
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v 172 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI 172 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE
Confidence 45778999999999999998875332 44444555544332221111111 11222233332 22211 12223445
Q ss_pred cCCcc--cccccccCCceEEEeCC
Q psy4436 132 DDEER--NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 132 gD~~~--di~~a~~~G~~~i~v~~ 153 (171)
+-+.+ ++....++|+..+.+..
T Consensus 173 dGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 173 DGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEeH
Confidence 55555 78888899998888754
No 249
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=77.04 E-value=18 Score=28.71 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=66.1
Q ss_pred CCCeeeeCCCHHHHHHHHhhC---CcEE-EEEcCCchhHHHHHHHHhcCcccccc---ee-eEecCCcHHHHHHHHHHhC
Q psy4436 51 GGAIIKYYRDVPAILKYLKQN---NCLV-AAASRTTEMLRAHQLVDLFNWNQHFD---HK-EIFPGQKTTHFANLKKATG 122 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l~~L~~~---g~~i-~i~S~~~~~~~~~~~l~~~~l~~~fd---~~-~~~~~~k~~~~~~~~~~~~ 122 (171)
.++...++|+..++++..+.. |+.+ .+||+... .++ .+..+|-..... .+ ...+-.+|+.++.+.+..
T Consensus 173 i~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~--~a~-~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~- 248 (326)
T PRK11840 173 LGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPI--AAK-RLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGA- 248 (326)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHH-HHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcC-
Confidence 445566788888888777766 9999 77777643 444 666666421111 00 011123677788888773
Q ss_pred CCCCcEEEEcCCcc---cccccccCCceEEEeCCCC
Q psy4436 123 IEYKDMVFFDDEER---NSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 123 ~~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~g~ 155 (171)
.--+.+|-+.. |+..|-++|...+++..+.
T Consensus 249 ---~vpVivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 249 ---TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred ---CCcEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 34577887766 8999999999999998754
No 250
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=76.69 E-value=9.7 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF 100 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f 100 (171)
...+.+.++++|.++.++.-++. .+..++..|+...|
T Consensus 60 L~~~~~~~~~~g~~l~l~~~~~~---v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 60 ILGRYKKIKNEGGEVIVCNVSPA---VKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH---HHHHHHHhCCceEE
Confidence 33567888889999998887633 56688999988766
No 251
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=76.41 E-value=8.8 Score=31.23 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCceecccc-CCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 15 FPKLAVFDLDHTLWPFHVYIDV-IPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
..++++.|+|.||....+...- ..+.......... ..--..--|++..++..+.+- +++++.|.+.. ..+..+++-
T Consensus 211 ~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~-~~~~v~kRp~l~~fl~~ls~~-~~l~~ft~s~~-~y~~~v~d~ 287 (390)
T COG5190 211 PKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQ-HLVYVSKRPELDYFLGKLSKI-HELVYFTASVK-RYADPVLDI 287 (390)
T ss_pred CccccccCCCccceeeccccccccchhhccccccce-eEEEEcCChHHHHHHhhhhhh-EEEEEEecchh-hhcchHHHh
Confidence 3578889999999754432110 0000000000000 001123367888888888877 99999999866 666666666
Q ss_pred cCccccccee---eEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q psy4436 94 FNWNQHFDHK---EIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNS 138 (171)
Q Consensus 94 ~~l~~~fd~~---~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di 138 (171)
++-...|... ..+--+.+. |-+-+...+.+...+++|+.++.--
T Consensus 288 l~~~k~~~~~lfr~sc~~~~G~-~ikDis~i~r~l~~viiId~~p~SY 334 (390)
T COG5190 288 LDSDKVFSHRLFRESCVSYLGV-YIKDISKIGRSLDKVIIIDNSPASY 334 (390)
T ss_pred ccccceeehhhhcccceeccCc-hhhhHHhhccCCCceEEeeCChhhh
Confidence 6655544332 222223333 5555666788899999999998843
No 252
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=76.20 E-value=4.6 Score=28.11 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=27.2
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
..+.+.++++.+++.|+++.+-||...++....+++.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 3467889999999999999999997554444434333
No 253
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=76.18 E-value=8.8 Score=31.01 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=29.2
Q ss_pred CeeeeCCCHHHHHHHHhhC-CcE-EEEEcCCchhHHHHHHHHhcCcc
Q psy4436 53 AIIKYYRDVPAILKYLKQN-NCL-VAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~-g~~-i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
.+..+.+++.++++.+++. |+. +.+.||..........+...|+.
T Consensus 115 GEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld 161 (373)
T PLN02951 115 GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLT 161 (373)
T ss_pred CCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCC
Confidence 3445578899999999986 875 88889885422222244445554
No 254
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=76.02 E-value=21 Score=26.81 Aligned_cols=110 Identities=10% Similarity=0.140 Sum_probs=61.7
Q ss_pred CCHHHHHHHHhhCCc--EEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHh----CCCCCcEE
Q psy4436 59 RDVPAILKYLKQNNC--LVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKAT----GIEYKDMV 129 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~--~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~----~~~~~~~l 129 (171)
+...+.|+.+++.|. +.+++=|-..+ +.....+...+.--....--++. +.-+..+.++.+-. +-.++-.+
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 457789999999998 88888775331 44444555433221111111121 22234444444311 11234558
Q ss_pred EEcCCcc--cccccccCCceEEEeCCC-CcHHHHHHHHHHhh
Q psy4436 130 FFDDEER--NSHDVSPLGVTCIHVKDG-MSHSVLHKGLKQWA 168 (171)
Q Consensus 130 ~vgD~~~--di~~a~~~G~~~i~v~~g-~~~~~~~~~~~~~~ 168 (171)
.||-+.+ ++....++|+..+.+..+ +..+...+.++.|.
T Consensus 183 eVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~ 224 (228)
T PRK08091 183 SIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWK 224 (228)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 8888887 687888899987777443 22333555565553
No 255
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=75.16 E-value=1.7 Score=36.39 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHhhCCcEEEEEcCCchhHHHHHHHHh-cCcccc
Q psy4436 64 ILKYLKQNNCLVAAASRTTEMLRAHQLVDL-FNWNQH 99 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~-~~l~~~ 99 (171)
.++..++.| +++++|.++. .+++.+++. +|.+..
T Consensus 101 ~~~~~~~~g-~~vVVTAsPr-vmVEpFake~LG~D~V 135 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPR-VMVERFAKEHLRADEV 135 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHH-HHHHHHHHHhcCCceE
Confidence 556677788 9999999988 889999998 776654
No 256
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=75.02 E-value=7 Score=26.27 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=23.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
..+|.+.++++..+++|+++++|+-+
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 55689999999999999999999976
No 257
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=74.40 E-value=5.2 Score=31.64 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=29.0
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHH
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAH 88 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~ 88 (171)
+-.++|.+.++++.+++.|+.+.+.||+..++..+
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~ 174 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLE 174 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHH
Confidence 33457899999999999999999999997755444
No 258
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=73.86 E-value=3.3 Score=27.07 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD 101 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd 101 (171)
+.++.+.++.+|.++.++.-++ ..+..+...++...+.
T Consensus 69 L~~~~~~~~~~g~~~~l~~~~~---~v~~~l~~~~~~~~~~ 106 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLVGLNP---DVRRILERSGLIDFIP 106 (117)
T ss_dssp HHHHHHHHHHTTCEEEEESHHH---HHHHHHHHTTGHHHSC
T ss_pred HHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCChhcC
Confidence 5678899999999999888753 3566899999887763
No 259
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=73.68 E-value=6.5 Score=29.84 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCccc-ccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEERN-SHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~d-i~~a~~~G~~~i~ 150 (171)
+.|...++.+|++|. ++-||.|...+ -..|+-+||.+++
T Consensus 94 eLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWEVWl 135 (298)
T COG0752 94 ELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWEVWL 135 (298)
T ss_pred HHHHHHHHHcCCChhhcceeeeccCCCCCcccccccceeEEE
Confidence 778999999999876 69999999884 6677888876554
No 260
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=73.35 E-value=20 Score=29.26 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=56.3
Q ss_pred HHHHHHHHhh----CCcEEEEEc--CCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 61 VPAILKYLKQ----NNCLVAAAS--RTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 61 v~~~l~~L~~----~g~~i~i~S--~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
+++-++.+++ .|.+++.+. |++. ...+ ++...+.. ||.. ...-+..+++ .|++|++++|-|..
T Consensus 37 l~~~~~~~~~a~~~~~~~i~yAvKAn~~~-~il~-~l~~~g~g--~Dv~------S~gEl~~al~-aG~~~~~I~f~g~~ 105 (394)
T COG0019 37 LRRNARELKSAFPGSGAKVFYAVKANSNP-AILR-LLAEEGSG--FDVA------SLGELELALA-AGFPPERIVFSGPA 105 (394)
T ss_pred HHHHHHHHHHHhccCCceEEEEEcCCCCH-HHHH-HHHHhCCC--ceec------CHHHHHHHHH-cCCChhhEEECCCC
Confidence 3344444443 356777766 4433 4444 77777655 5544 1222444444 49999999999988
Q ss_pred cc--cccccccCCceEEEeCCCCcHHHH
Q psy4436 135 ER--NSHDVSPLGVTCIHVKDGMSHSVL 160 (171)
Q Consensus 135 ~~--di~~a~~~G~~~i~v~~g~~~~~~ 160 (171)
.. ++..|.+.|+.++.+..-...+.+
T Consensus 106 ks~~ei~~a~e~gi~~i~vdS~~El~~l 133 (394)
T COG0019 106 KSEEEIAFALELGIKLINVDSEEELERL 133 (394)
T ss_pred CCHHHHHHHHHcCCcEEEeCCHHHHHHH
Confidence 87 799999999998888654433333
No 261
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=73.11 E-value=13 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~ 102 (171)
...+.+.++++|..+.++.-++. ....++..++...|..
T Consensus 64 L~~~~~~~~~~~~~~~l~~~~~~---~~~~l~~~~l~~~~~i 102 (108)
T TIGR00377 64 LLGRYKQVRRVGGQLVLVSVSPR---VARLLDITGLLRIIPI 102 (108)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH---HHHHHHHhChhheecc
Confidence 34556677888998888776533 5558888888876643
No 262
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=72.89 E-value=5.1 Score=29.88 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHH
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLV 91 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l 91 (171)
|.++|++|++. +.|+++|++..+....++.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~ 30 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLG 30 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHS
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHc
Confidence 56889999976 9999999998865555443
No 263
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=72.27 E-value=6.8 Score=30.09 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
++++.++++.|+++|+ ++|+||.+.
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 7888889999988887 788888654
No 264
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=71.06 E-value=4 Score=31.22 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCcc-cccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEER-NSHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~-di~~a~~~G~~~i~ 150 (171)
+.|..-++.+|+++. ++-||.|... --..|+-+||.+++
T Consensus 88 ~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWEVWl 129 (284)
T PF02091_consen 88 ELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWEVWL 129 (284)
T ss_dssp HHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCccccceeEeecCCCCCcccccccccEEEE
Confidence 889999999998765 6999999988 57788888876554
No 265
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=70.66 E-value=17 Score=23.30 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
...+.+.++.+|.++.++.-++. ....++..|+..
T Consensus 62 l~~~~~~~~~~g~~l~l~g~~~~---v~~~l~~~gl~~ 96 (109)
T cd07041 62 LLRLARALRLLGARTILTGIRPE---VAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHH---HHHHHHHhCCCh
Confidence 44567888889999988887644 455888888775
No 266
>PLN03190 aminophospholipid translocase; Provisional
Probab=70.52 E-value=7.9 Score=36.18 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCc
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNW 96 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l 96 (171)
++.+++.++++.|++.|+++.++|+-.. ..+..+....++
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~-~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQ-ETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHHHhCC
Confidence 5789999999999999999999999765 555555554433
No 267
>KOG4132|consensus
Probab=69.74 E-value=46 Score=25.17 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred CHHHH-HHHHhhCCcEEEEEc---CCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCC--cEEEEcC
Q psy4436 60 DVPAI-LKYLKQNNCLVAAAS---RTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYK--DMVFFDD 133 (171)
Q Consensus 60 ~v~~~-l~~L~~~g~~i~i~S---~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~--~~l~vgD 133 (171)
...+. .++|+++|++|=-+. ...+|+...++...+......+++..++-....-..+.+...+.+.+ ..+.||-
T Consensus 143 ~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGP 222 (260)
T KOG4132|consen 143 LRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGP 222 (260)
T ss_pred chhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCc
Confidence 45554 578999999884443 22344555545444544444455544442222222223333333333 4667777
Q ss_pred CcccccccccCCceEEEeCCCCcHHHHHHHHHHhhhcC
Q psy4436 134 EERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASKN 171 (171)
Q Consensus 134 ~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~ 171 (171)
+... +..+.|++.-.+...-+.+.+..+++.+.+++
T Consensus 223 tT~k--aL~~~g~~~~~vs~~P~pe~L~~~I~~~~~~~ 258 (260)
T KOG4132|consen 223 TTRK--ALEDLGVKVDVVSPAPDPESLADAIELYQRHK 258 (260)
T ss_pred chHH--HHHHcCCCcceecCCCCHHHHHHHHHhhhhcc
Confidence 7664 44568998888888888888888888887764
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.12 E-value=19 Score=30.97 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=43.1
Q ss_pred cEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEcC-CchhHHHHHHHHhcC
Q psy4436 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASR-TTEMLRAHQLVDLFN 95 (171)
Q Consensus 17 k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~-~~~~~~~~~~l~~~~ 95 (171)
.+.++|+||-+++..+... -.-.+++....+.|.+++|+|. ++-|+++..+...++
T Consensus 256 giAvldldGevl~~~S~r~-----------------------~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~ 312 (652)
T COG2433 256 GIAVLDLDGEVLDLESRRG-----------------------IDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFN 312 (652)
T ss_pred eEEEEecCCcEEeeecccc-----------------------CCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcC
Confidence 4788999999977554321 1234778888889999999996 456688887777777
Q ss_pred ccc
Q psy4436 96 WNQ 98 (171)
Q Consensus 96 l~~ 98 (171)
-.-
T Consensus 313 A~l 315 (652)
T COG2433 313 AVL 315 (652)
T ss_pred Ccc
Confidence 553
No 269
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=66.94 E-value=48 Score=25.49 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=66.8
Q ss_pred CCCeeeeCCCHHHHH---HHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-eEec---CCcHHHHHHHHHHhCC
Q psy4436 51 GGAIIKYYRDVPAIL---KYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-EIFP---GQKTTHFANLKKATGI 123 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l---~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~~~~---~~k~~~~~~~~~~~~~ 123 (171)
.++...++|+..+++ +.|-+.|+.|...++... ..++ .|+..|-....... -+.+ -..+..++.+.+..++
T Consensus 113 i~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~-v~a~-rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~v 190 (267)
T CHL00162 113 ISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADP-MLAK-HLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKI 190 (267)
T ss_pred eCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCH-HHHH-HHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCC
Confidence 445567788877776 567789999999998754 5444 78888755433211 0111 2345667777765443
Q ss_pred CCCcEEEEcCCcc---cccccccCCceEEEeCCCC
Q psy4436 124 EYKDMVFFDDEER---NSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 124 ~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~g~ 155 (171)
-+.+|-+.. |+..|-++|...+++..+.
T Consensus 191 ----pVivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 191 ----PVIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred ----cEEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 467776665 8999999999999998754
No 270
>KOG4549|consensus
Probab=66.04 E-value=8.9 Score=26.14 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=39.9
Q ss_pred CCCCCcEEEEcCCcccccccccCCceEEEeCCCCcHHHHHHHHHHhh
Q psy4436 122 GIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWA 168 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~ 168 (171)
+-.-+++.|..|-...+...++.|+..+.++++.+.+-..++|+-|.
T Consensus 37 g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fk 83 (144)
T KOG4549|consen 37 GSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFK 83 (144)
T ss_pred ccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999999999999988887777887664
No 271
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=65.19 E-value=60 Score=24.80 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+.+.++++.+.|..+++++.+-. +.+..++.+.|+.
T Consensus 119 l~~~v~kI~~~g~nvIl~~k~I~-~~a~~~l~k~gI~ 154 (261)
T cd03334 119 LKNLVSRIVALRPDVILVEKSVS-RIAQDLLLEAGIT 154 (261)
T ss_pred HHHHHHHHHhcCCCEEEECCccC-HHHHHHHHHCCCE
Confidence 55677888889999999888755 7777788888866
No 272
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=64.78 E-value=48 Score=24.75 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceee---Eec--CCcHHHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKE---IFP--GQKTTHFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~---~~~--~~k~~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
..++++.+++.|.++++.-|...+ +..+.+++ ....++.-... ++. +-.+..+.++.+--+.-++..+.|+-+
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~-~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGG 181 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPVEVLFPLID-TDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGG 181 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHc-cchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCC
Confidence 568899999999988877664331 33332331 12122211111 111 111233444433222223455777777
Q ss_pred cc--cccccccCCceEEEeCCC
Q psy4436 135 ER--NSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 135 ~~--di~~a~~~G~~~i~v~~g 154 (171)
.+ .+..+.++|+..+.+..+
T Consensus 182 I~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 182 INLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred CCHHHHHHHHHcCCCEEEEchH
Confidence 76 788889999988888553
No 273
>KOG0206|consensus
Probab=63.96 E-value=10 Score=35.16 Aligned_cols=42 Identities=14% Similarity=0.006 Sum_probs=33.0
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
-++-+||.+.|+.|++.|+|+.++|+--. +.+-.+.-..++.
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~-ETAiNIg~sC~Ll 691 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQ-ETAINIGYSCRLL 691 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHH-HHHHHHHHhhcCC
Confidence 45788999999999999999999999755 5665555555443
No 274
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=63.77 E-value=9.5 Score=29.92 Aligned_cols=43 Identities=2% Similarity=-0.272 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHhCCC--CCcEEEEcCCcccccccccCCceEEE
Q psy4436 108 GQKTTHFANLKKATGIE--YKDMVFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~--~~~~l~vgD~~~di~~a~~~G~~~i~ 150 (171)
.+|....+.+.+.++-. +=.++-+||+++|+.+...+....+.
T Consensus 207 ~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 207 LPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 36778888888877654 33789999999999999998876655
No 275
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=63.42 E-value=37 Score=22.00 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=25.2
Q ss_pred HHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 63 AILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+....|++.|+++++++-.+. +..+.+.+..+++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~-~~~~~f~~~~~~p 37 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSP-EGIEKFCELTGFP 37 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCH-HHHHHHHhccCCC
Confidence 457788899999999997766 4467677665544
No 276
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=63.11 E-value=30 Score=27.49 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHH---HH-----------HhcCcccccceeeEecCCcHHHHHHHHHHhCC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQ---LV-----------DLFNWNQHFDHKEIFPGQKTTHFANLKKATGI 123 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~---~l-----------~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~ 123 (171)
.|-+..+++.|+++|++++|+|.+.. ..... .+ +-+-+...+..............+.++++++
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg-~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~~~~~~~~~~~- 128 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYG-RKSKGEPILVSDGSDAEEVGDEPLLLARKLPVPVIVGPDRVAAARAALKEFP- 128 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCC-CCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCcEEEeCcHHHHHHHHHHHCC-
Confidence 46688899999999999999997533 11110 00 0000000111111233445566777777766
Q ss_pred CCCcEEEEcCCcccccccccCCceEEE
Q psy4436 124 EYKDMVFFDDEERNSHDVSPLGVTCIH 150 (171)
Q Consensus 124 ~~~~~l~vgD~~~di~~a~~~G~~~i~ 150 (171)
-+++..||+..+....+.+.+-.+-
T Consensus 129 --~dviilDDGfQh~~L~rDl~Ivl~D 153 (326)
T PF02606_consen 129 --ADVIILDDGFQHRRLKRDLDIVLVD 153 (326)
T ss_pred --CCEEEEcCCcccccccCCcEEEEEe
Confidence 6799999999988877776654433
No 277
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=62.52 E-value=27 Score=22.02 Aligned_cols=35 Identities=0% Similarity=-0.108 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
...+.+.++++|.++.++.-++. .+..++..|+..
T Consensus 60 L~~l~~~~~~~g~~l~l~~~~~~---v~~~l~~~gl~~ 94 (100)
T cd06844 60 LLERSRLAEAVGGQFVLTGISPA---VRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHcCCEEEEECCCHH---HHHHHHHhCchh
Confidence 45677888999999988877643 555888887664
No 278
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=62.02 E-value=43 Score=26.74 Aligned_cols=85 Identities=9% Similarity=0.105 Sum_probs=45.9
Q ss_pred HHhhC-CcEE-EEEcCCc-hhHHHHHHHHhcCcccccceeeEe-cCCcH-------HHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 67 YLKQN-NCLV-AAASRTT-EMLRAHQLVDLFNWNQHFDHKEIF-PGQKT-------THFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 67 ~L~~~-g~~i-~i~S~~~-~~~~~~~~l~~~~l~~~fd~~~~~-~~~k~-------~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
+|++. ++.+ .|.|+.. .+.....+.+.+++ ...+..-.. ..+.. ..+..++++. +|+-++..||+.
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLERE--KPDAVLVLGDRN 78 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHH--T-SEEEEETTSH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 45655 6666 4556653 13666667776666 333322111 11111 2234444444 799999999999
Q ss_pred cc---ccccccCCceEEEeCCC
Q psy4436 136 RN---SHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 136 ~d---i~~a~~~G~~~i~v~~g 154 (171)
.= ..+|...++..+++..|
T Consensus 79 ~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES--
T ss_pred hHHHHHHHHHHhCCCEEEecCC
Confidence 84 44566699999999776
No 279
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.00 E-value=57 Score=24.79 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=58.0
Q ss_pred ccCCCeeeeCCCHHHHH---HHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----eEecCCcHHHHHHHHHHh
Q psy4436 49 DAGGAIIKYYRDVPAIL---KYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----EIFPGQKTTHFANLKKAT 121 (171)
Q Consensus 49 ~~~~~~~~~~~~v~~~l---~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----~~~~~~k~~~~~~~~~~~ 121 (171)
+-.++...++|+..+++ +.|.+.|+.|.-.++.+. ..++ .|+..|-......- ....-..+..++.+.++.
T Consensus 97 EVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~-v~ak-rL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 97 EVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP-VLAK-RLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp --BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-H-HHHH-HHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred EEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCH-HHHH-HHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhc
Confidence 33445667788887776 567789999998888754 5444 78888755433211 001122456788888888
Q ss_pred CCCCCcEEEEcCCcc---cccccccCCceEEEeCC
Q psy4436 122 GIEYKDMVFFDDEER---NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~ 153 (171)
+++ +.||-+.. |...|-+.|...++++.
T Consensus 175 ~vP----vIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 175 DVP----VIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp SSS----BEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred CCc----EEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 764 56666554 88888889999999975
No 280
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=61.45 E-value=59 Score=24.79 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHhhCCcEEE-EEcCCchhHHHHHHHHhcC-cccccceeeEecCC----cH---HHHHHHHHHhCCCCCcE
Q psy4436 58 YRDVPAILKYLKQNNCLVA-AASRTTEMLRAHQLVDLFN-WNQHFDHKEIFPGQ----KT---THFANLKKATGIEYKDM 128 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~-i~S~~~~~~~~~~~l~~~~-l~~~fd~~~~~~~~----k~---~~~~~~~~~~~~~~~~~ 128 (171)
.+...++++.+++.|+..+ +++-++..+..+.+.+... +. |.-...++... .+ +.++++-+..+. -
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi-y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~----p 200 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV-YLVSRAGVTGARNRAASALNELVKRLKAYSAK----P 200 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE-EEEECCCCCCCcccCChhHHHHHHHHHhhcCC----C
Confidence 4567788889999998755 5665443244444555443 22 22111222211 12 233333332222 3
Q ss_pred EEEcCCcc---cccccccCCceEEEeCCCC
Q psy4436 129 VFFDDEER---NSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 129 l~vgD~~~---di~~a~~~G~~~i~v~~g~ 155 (171)
+++|=+.+ ++..+.+.|...+.+....
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 77787765 7788888999988886543
No 281
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=60.59 E-value=46 Score=26.23 Aligned_cols=44 Identities=7% Similarity=-0.054 Sum_probs=30.0
Q ss_pred eeeeCCCHHHHHHHHhhCCc--EEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 54 IIKYYRDVPAILKYLKQNNC--LVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~--~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+..+.++..++++.+++.+. .+.+.||..........+...|+.
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLK 116 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCC
Confidence 34457899999999998764 789999985422223345555655
No 282
>smart00475 53EXOc 5'-3' exonuclease.
Probab=60.50 E-value=6.4 Score=30.13 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCc----EEEEcCCcccccccccCCceE
Q psy4436 114 FANLKKATGIEYKD----MVFFDDEERNSHDVSPLGVTC 148 (171)
Q Consensus 114 ~~~~~~~~~~~~~~----~l~vgD~~~di~~a~~~G~~~ 148 (171)
.+.+.+++|++|++ +..+||+-.++......|.++
T Consensus 160 ~~~v~~~~Gv~p~q~~d~~aL~GD~sDnipGV~GIG~Kt 198 (259)
T smart00475 160 PENVIEKYGLTPEQIIDYKALMGDSSDNIPGVPGIGEKT 198 (259)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhCCcccCCCCCCCCCHHH
Confidence 45556789999997 567999999999888888654
No 283
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=60.38 E-value=10 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|++..
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46789999999999999999999755
No 284
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=60.06 E-value=12 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+++.+.++.++++|.+++.+|+++.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45688999999999999999999865
No 285
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=59.97 E-value=2.1 Score=25.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccccccc
Q psy4436 114 FANLKKATGIEYKDMVFFDDEERNSHDVS 142 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~~di~~a~ 142 (171)
.+..++++|+ ++|+||+.+|+....
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 4667777765 789999999877543
No 286
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=59.23 E-value=32 Score=25.76 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=55.3
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc----eeeEec-CCcHHHHHHHHHHhCCCCCcEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD----HKEIFP-GQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd----~~~~~~-~~k~~~~~~~~~~~~~~~~~~l 129 (171)
++..+.-.++++.|+++|+++.+.-=-+. .-+. .....|- .|.. .++... +|. ..+..+.+.+...-.++-
T Consensus 88 IP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~-~Qa~-~Aa~aGa-~yvsPyvgRi~d~g~D~~-~~i~~i~~~~~~~~~~tk 163 (222)
T PRK12656 88 VPVTPAGLAAIKTLKAEGYHITATAIYTV-FQGL-LAIEAGA-DYLAPYYNRMENLNIDSN-AVIGQLAEAIDRENSDSK 163 (222)
T ss_pred eCCCHHHHHHHHHHHHCCCceEEeeeCCH-HHHH-HHHHCCC-CEEecccchhhhcCCCHH-HHHHHHHHHHHhcCCCCE
Confidence 34455567889999999998863332112 1122 2233443 2222 111111 222 334444444432222355
Q ss_pred EEcCCccc---ccccccCCceEEEeCC---------CCcHHHHHHHHHHhh
Q psy4436 130 FFDDEERN---SHDVSPLGVTCIHVKD---------GMSHSVLHKGLKQWA 168 (171)
Q Consensus 130 ~vgD~~~d---i~~a~~~G~~~i~v~~---------g~~~~~~~~~~~~~~ 168 (171)
.+.-|.++ +..+..+|+..+-++. ..+.+.++...++|.
T Consensus 164 ILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~ 214 (222)
T PRK12656 164 ILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWE 214 (222)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 55667664 5555568999888864 233444555555564
No 287
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=58.51 E-value=6 Score=31.64 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=16.2
Q ss_pred ccccCCcEEEEeCCCCCCCcee
Q psy4436 11 SVKKFPKLAVFDLDHTLWPFHV 32 (171)
Q Consensus 11 ~~~~~~k~vvfDlDgTL~~~~~ 32 (171)
.|.+ ++++-||+|.||+....
T Consensus 8 ~l~~-i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 8 NLEK-IQVFGFDMDYTLAQYKS 28 (343)
T ss_pred cccc-CCEEEECccccccccCh
Confidence 4444 89999999999986433
No 288
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=58.47 E-value=73 Score=23.59 Aligned_cols=99 Identities=7% Similarity=-0.087 Sum_probs=49.9
Q ss_pred HHHHHhhCCcEE-EEEcCCc-----------hhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 64 ILKYLKQNNCLV-AAASRTT-----------EMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 64 ~l~~L~~~g~~i-~i~S~~~-----------~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
++..++++|+.+ +++|-.+ ..+.++...+.+|++...-..........+.+..++++..-.--+.+.+
T Consensus 13 al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~vv~ 92 (218)
T TIGR03679 13 ALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEGIVT 92 (218)
T ss_pred HHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEE
Confidence 355666788877 4545111 1245566667777763211111000111122333333332123467888
Q ss_pred cCCcccc------cccccCCceEEEeCCCCcHHHHHH
Q psy4436 132 DDEERNS------HDVSPLGVTCIHVKDGMSHSVLHK 162 (171)
Q Consensus 132 gD~~~di------~~a~~~G~~~i~v~~g~~~~~~~~ 162 (171)
||...+. ..+..+|+..+.=-|+.+.+++-+
T Consensus 93 G~i~sd~~~~~~e~v~~~~gl~~~~PLw~~~~~el~~ 129 (218)
T TIGR03679 93 GAIASRYQKSRIERICEELGLKVFAPLWGRDQEEYLR 129 (218)
T ss_pred CCcccHhHHHHHHHHHHhCCCeEEeehhcCCHHHHHH
Confidence 8877643 344557777666667777665533
No 289
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=58.41 E-value=9.6 Score=28.69 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=25.5
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
-.+.++..++++.|++.|+++.+-||+..
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 33467899999999999999999999976
No 290
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=58.38 E-value=50 Score=21.70 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCcEEEEEcCCch-----h--HHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEE
Q psy4436 62 PAILKYLKQNNCLVAAASRTTE-----M--LRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~-----~--~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l 129 (171)
.+-++.|+++|++.+|+-.... + ...+...+.+|+....-.+ ....+..+.+..+.+.+.-.+.-++
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv-~~~~~~~~~v~~f~~~l~~~~~Pvl 90 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPV-DGGAITEEDVEAFADALESLPKPVL 90 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeec-CCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 3667899999999988875321 1 2244578889988222111 2224444555555544443344444
No 291
>KOG0208|consensus
Probab=56.78 E-value=18 Score=33.09 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=33.5
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
-++.+....+|++|.+.+++.+++|+-+. ..+-...+..|+..
T Consensus 704 NkLK~~T~~VI~eL~~AnIRtVMcTGDNl-lTaisVakeCgmi~ 746 (1140)
T KOG0208|consen 704 NKLKEETKRVIDELNRANIRTVMCTGDNL-LTAISVAKECGMIE 746 (1140)
T ss_pred cccccccHHHHHHHHhhcceEEEEcCCch-heeeehhhcccccC
Confidence 35677888999999999999999999766 44554666666665
No 292
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=55.77 E-value=76 Score=23.36 Aligned_cols=94 Identities=12% Similarity=0.204 Sum_probs=61.0
Q ss_pred CCHHHHHHH-HhhCCcEEEEEcCCchh---HHHHHHHHhcCcccccceeeEecC---------CcHHHHHHHHHHhCCCC
Q psy4436 59 RDVPAILKY-LKQNNCLVAAASRTTEM---LRAHQLVDLFNWNQHFDHKEIFPG---------QKTTHFANLKKATGIEY 125 (171)
Q Consensus 59 ~~v~~~l~~-L~~~g~~i~i~S~~~~~---~~~~~~l~~~~l~~~fd~~~~~~~---------~k~~~~~~~~~~~~~~~ 125 (171)
..+.++.+. .++.+.-.+++|++.+. ......++.-++. |+.+-..|. -|-..+..+++.+. ..
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~--Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~ 133 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE--FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NA 133 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC--ccEEEeCcccccCccccHHHHHHHHHHHHhcC-CC
Confidence 344454433 33446778999998642 3344455556666 777633222 24466788888888 88
Q ss_pred CcEEEEcCCccccccccc------------CCceEEEeCCCC
Q psy4436 126 KDMVFFDDEERNSHDVSP------------LGVTCIHVKDGM 155 (171)
Q Consensus 126 ~~~l~vgD~~~di~~a~~------------~G~~~i~v~~g~ 155 (171)
+++-+-+|+...+...+. .-..+|+|....
T Consensus 134 ~eI~IYeDR~~hvk~Fr~Ff~~~~~~~r~~i~~~VI~V~~~~ 175 (197)
T PF10307_consen 134 EEIRIYEDRPKHVKGFRDFFEELNRNTRKPIQWEVIHVPPLS 175 (197)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHhhhcccCCCceEEEEeCCCC
Confidence 999999999998776654 345778887644
No 293
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=54.84 E-value=21 Score=32.75 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCC--cEEEEcCCcc-cccccccCCceEEE
Q psy4436 112 THFANLKKATGIEYK--DMVFFDDEER-NSHDVSPLGVTCIH 150 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~--~~l~vgD~~~-di~~a~~~G~~~i~ 150 (171)
+.|..-++.+|+++. ++-||.|.+. --..|+-+||.+++
T Consensus 94 ~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~ 135 (1000)
T PRK14908 94 ELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVWL 135 (1000)
T ss_pred HHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEEE
Confidence 789999999999765 6999999998 58889999987654
No 294
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=54.78 E-value=90 Score=26.44 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=12.8
Q ss_pred CcEEEEeCCCCCCCc
Q psy4436 16 PKLAVFDLDHTLWPF 30 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~ 30 (171)
-++++||+||||+..
T Consensus 22 ~~~~~FDfDGTLt~~ 36 (497)
T PLN02177 22 NQTVAADLDGTLLIS 36 (497)
T ss_pred ccEEEEecCCcccCC
Confidence 467999999999963
No 295
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.40 E-value=21 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.5
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.++++.|+++|+++.+.|++..
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCHH
Confidence 388899999999999999888743
No 296
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.35 E-value=18 Score=26.15 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC-----cccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCccc
Q psy4436 63 AILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN-----WNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERN 137 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~-----l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~d 137 (171)
.+|..+++.|++++++.+.-.+...+ ....+. +-..|+.+ +..... -..-+.++|++++++...|+-..|
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~-~~~~~~~~~r~~l~~f~~i--~aqs~~--da~r~~~lG~~~~~v~v~GnlKfd 183 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFR-RYRRFPFLFRPLLSRFDRI--LAQSEA--DAERFRKLGAPPERVHVTGNLKFD 183 (186)
T ss_dssp HHHHH-----S-EEEEEE---------------HHHHHHGGG-SEE--EESSHH--HHHHHHTTT-S--SEEE---GGG-
T ss_pred HHHHHHhhcCCCEEEEeeeeccccch-hhhhhHHHHHHHHHhCCEE--EECCHH--HHHHHHHcCCCcceEEEeCcchhc
Confidence 78999999999999999864422222 111111 01123333 222222 444556799999999999998776
Q ss_pred cc
Q psy4436 138 SH 139 (171)
Q Consensus 138 i~ 139 (171)
..
T Consensus 184 ~~ 185 (186)
T PF04413_consen 184 QA 185 (186)
T ss_dssp --
T ss_pred cc
Confidence 53
No 297
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=54.26 E-value=7.8 Score=30.78 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCcEEEEEcC-----CchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 61 VPAILKYLKQNNCLVAAASR-----TTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~-----~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
-.++|++|+++|+.++.+|= ..+| .+.-++.+.--..+.+.-|+. -..++++....-.+++.||-+.
T Consensus 188 t~~LL~kLk~kGv~~afvTLHVGaGTF~p------V~~~~i~eH~MH~E~~~v~~e--ta~~i~~~k~~GgRIiaVGTTs 259 (348)
T COG0809 188 TEELLEKLKAKGVEIAFVTLHVGAGTFRP------VKVENIEEHKMHSEYYEVPQE--TADAINAAKARGGRIIAVGTTS 259 (348)
T ss_pred CHHHHHHHHHCCceEEEEEEEeccccccc------ceeccccccccchhheecCHH--HHHHHHHHHHcCCeEEEEcchh
Confidence 35899999999999988882 1111 111111111111122222322 3334444445567899999875
Q ss_pred c-cccccc-------cCCceEEEeCCCCcHHHHHHHHHH
Q psy4436 136 R-NSHDVS-------PLGVTCIHVKDGMSHSVLHKGLKQ 166 (171)
Q Consensus 136 ~-di~~a~-------~~G~~~i~v~~g~~~~~~~~~~~~ 166 (171)
- =++.|. ..|+..+.+..|+..+.....+.+
T Consensus 260 ~R~LEsa~~~~~~~~~sg~T~IFI~PGy~~~~vD~LiTN 298 (348)
T COG0809 260 VRTLESAAREAGLKAFSGWTDIFIYPGYRFKVVDALITN 298 (348)
T ss_pred HHHHHHHhcccCcCcCcCcccEEEcCCCcceeeeeeeec
Confidence 4 333333 256778888877766544443333
No 298
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=53.91 E-value=15 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+++.++++.++++|.+++.+|++..
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46788999999999999999998755
No 299
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=53.46 E-value=53 Score=20.45 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHH-HHHhhCCc-EEEEEcCCchhHHHHHHHHhcCccccccee-eE--ecCCcH-HHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 61 VPAIL-KYLKQNNC-LVAAASRTTEMLRAHQLVDLFNWNQHFDHK-EI--FPGQKT-THFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 61 v~~~l-~~L~~~g~-~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~~--~~~~k~-~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
..+.+ +.|+..|+ .+..+++. . + +...++... ++.+ -. .+.-+. +..+++ ++.+ +.-.++++.+.
T Consensus 10 ~~~~l~~~l~~~~~~~v~~~~~~-~-~-~~~~~~~~~----~d~iiid~~~~~~~~~~~~~~i-~~~~-~~~~ii~~t~~ 80 (112)
T PF00072_consen 10 IRELLEKLLERAGYEEVTTASSG-E-E-ALELLKKHP----PDLIIIDLELPDGDGLELLEQI-RQIN-PSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSH-H-H-HHHHHHHST----ESEEEEESSSSSSBHHHHHHHH-HHHT-TTSEEEEEESS
T ss_pred HHHHHHHHHHhCCCCEEEEECCH-H-H-HHHHhcccC----ceEEEEEeeecccccccccccc-cccc-ccccEEEecCC
Confidence 34444 44556899 66666664 2 3 344666665 3333 11 223334 444444 5455 55567778766
Q ss_pred cc--cccccccCCceEEEeCCCCcHHHHHHHH
Q psy4436 135 ER--NSHDVSPLGVTCIHVKDGMSHSVLHKGL 164 (171)
Q Consensus 135 ~~--di~~a~~~G~~~i~v~~g~~~~~~~~~~ 164 (171)
.. ....+.++|+..+...+- +.+++.+.+
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp~-~~~~l~~~i 111 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKPF-SPEELRAAI 111 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESSS-SHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEECCC-CHHHHHHhh
Confidence 55 677888899988887544 455555443
No 300
>PRK04302 triosephosphate isomerase; Provisional
Probab=53.08 E-value=61 Score=23.97 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=62.9
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----Eec----CCcHHHHHHHHHHhCC-CC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----IFP----GQKTTHFANLKKATGI-EY 125 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----~~~----~~k~~~~~~~~~~~~~-~~ 125 (171)
.++..+.+.++..++.|+...+++.... ..+ .+...+.. |-+++ +.. ...++....+.+...- ..
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~~~--~~~-~~~~~~~~--~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~ 172 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNNPE--TSA-AAAALGPD--YVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNP 172 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCHH--HHH-HHhcCCCC--EEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccC
Confidence 4556688899999999999999888733 333 23333321 21111 111 1334445544443332 22
Q ss_pred CcEEEEcCCcc---cccccccCCceEEEeCCCC-cHHHHHHHHHHhhh
Q psy4436 126 KDMVFFDDEER---NSHDVSPLGVTCIHVKDGM-SHSVLHKGLKQWAS 169 (171)
Q Consensus 126 ~~~l~vgD~~~---di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~~~ 169 (171)
+--+..|-+.. ++..+.+.|+..+.+.... ..+.+...+++|.+
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~ 220 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVS 220 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHh
Confidence 33455566554 6777778999999996643 45566666666653
No 301
>KOG0203|consensus
Probab=52.90 E-value=9.6 Score=34.16 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=58.7
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc----ccc-------------------eeeE----ecC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ----HFD-------------------HKEI----FPG 108 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~----~fd-------------------~~~~----~~~ 108 (171)
++...+.+++...+..|++++.+|+. +|-.++......|+.. .+. .... .+.
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgd-hpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~ 668 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGD-HPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD 668 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecC-ccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence 56677889999999999999999987 5567776777777432 110 0001 111
Q ss_pred CcHHHHHHHHHHhC------CCCCc--------------EEEEcCCcccccccccCCc
Q psy4436 109 QKTTHFANLKKATG------IEYKD--------------MVFFDDEERNSHDVSPLGV 146 (171)
Q Consensus 109 ~k~~~~~~~~~~~~------~~~~~--------------~l~vgD~~~di~~a~~~G~ 146 (171)
-.++.+..+++.+. -+|++ +-..||+.+|-.+.+++.+
T Consensus 669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADI 726 (1019)
T KOG0203|consen 669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADI 726 (1019)
T ss_pred cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhccccc
Confidence 12455666666543 24443 3456999999998888775
No 302
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.84 E-value=1.1e+02 Score=23.88 Aligned_cols=72 Identities=4% Similarity=-0.081 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhCCcEEE--------------EEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCC
Q psy4436 60 DVPAILKYLKQNNCLVA--------------AASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEY 125 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~--------------i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~ 125 (171)
+-...+++|+++|++++ |++.-..+...+..++..|+. +.....|...-.+...+++.-.-
T Consensus 42 HN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~-----viDaTCP~V~k~~~~v~~~~~~G 116 (281)
T PRK12360 42 HNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLE-----IIDATCPFVKKIQNIVEEYYNKG 116 (281)
T ss_pred CCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCe-----EEeCCCccchHHHHHHHHHHhCC
Confidence 44456666666665433 233222223444466666654 11223444444666666666666
Q ss_pred CcEEEEcCCcc
Q psy4436 126 KDMVFFDDEER 136 (171)
Q Consensus 126 ~~~l~vgD~~~ 136 (171)
-.+++|||.-.
T Consensus 117 y~iviiG~~~H 127 (281)
T PRK12360 117 YSIIIVGDKNH 127 (281)
T ss_pred CEEEEEcCCCC
Confidence 78999998766
No 303
>PRK01362 putative translaldolase; Provisional
Probab=52.83 E-value=46 Score=24.75 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=54.5
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc----ceeeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF----DHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f----d~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
+..+.-.++++.|+++|+++.+--=-+..+.. .....|-. |. ..++....+-...++.+.+.+.-..-++-.+
T Consensus 85 P~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~--~Aa~aGa~-yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkil 161 (214)
T PRK01362 85 PMTPEGLKAVKALSKEGIKTNVTLIFSANQAL--LAAKAGAT-YVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEII 161 (214)
T ss_pred CCCHHHHHHHHHHHHCCCceEEeeecCHHHHH--HHHhcCCc-EEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 34444578899999999988633321111111 22223322 21 1111122222344444444443322345566
Q ss_pred cCCcccccccc---cCCceEEEeCC---------CCcHHHHHHHHHHhh
Q psy4436 132 DDEERNSHDVS---PLGVTCIHVKD---------GMSHSVLHKGLKQWA 168 (171)
Q Consensus 132 gD~~~di~~a~---~~G~~~i~v~~---------g~~~~~~~~~~~~~~ 168 (171)
.-|.++..... .+|+.++-++. ..+.+.++..-++|.
T Consensus 162 aAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~ 210 (214)
T PRK01362 162 AASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADWE 210 (214)
T ss_pred EeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 67777554444 58998887764 333444455555554
No 304
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=52.26 E-value=32 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=23.9
Q ss_pred eeeCCC-HHHHHHHHhhCCcEEEEEcCCch
Q psy4436 55 IKYYRD-VPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 55 ~~~~~~-v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
..+.++ +.++++.+++.|+.+++-||+..
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 334555 68999999999999999999855
No 305
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.02 E-value=16 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+++.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999999765
No 306
>KOG0541|consensus
Probab=51.57 E-value=74 Score=22.63 Aligned_cols=43 Identities=9% Similarity=-0.037 Sum_probs=31.3
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH 99 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~ 99 (171)
-.||-++-+.+|+.+|+..++|=.-+.|-....|-+.++-...
T Consensus 63 HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~ 105 (171)
T KOG0541|consen 63 HVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDH 105 (171)
T ss_pred cCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccce
Confidence 3699999999999999876555543344666778888865543
No 307
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=50.92 E-value=37 Score=20.81 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD 101 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd 101 (171)
...+.+.++++|..+.+..-++ .....++..++..+|.
T Consensus 59 L~~l~~~~~~~g~~v~i~~~~~---~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 59 LLGAYKRARAAGGRLVLVNVSP---AVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHHcCCeEEEEcCCH---HHHHHHHHhCcceeee
Confidence 3456677778898877776553 3566889998886653
No 308
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=50.84 E-value=47 Score=25.68 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=30.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCc-EEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 53 AIIKYYRDVPAILKYLKQNNC-LVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~-~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
.+..+.+++.++++.+++.|+ .+.+.||..........+...++.
T Consensus 65 GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~ 110 (302)
T TIGR02668 65 GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLD 110 (302)
T ss_pred cccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCC
Confidence 344567889999999999998 899999985422222244444543
No 309
>PHA02769 hypothetical protein; Provisional
Probab=50.54 E-value=2.9 Score=27.78 Aligned_cols=70 Identities=7% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
..-++.++...+-+|.-++=-.++++ .-...+++-+-..|...+...-+.+| |+.++.++|++-++.+||
T Consensus 16 iklar~li~~yh~qg~~~ggga~~~~--~y~~yleked~~~y~~avawlhd~~p--fr~ia~~~~ip~drs~fi 85 (154)
T PHA02769 16 IKLARMLIDYYHIQGMVKGGGAGRNS--RYFIYLEKEDDKEYIVAVAWLHDNTP--FRFIAQQYNIPNDRSYFI 85 (154)
T ss_pred HHHHHHHHHHHHHhcccccCCCCcce--EEEEEeeccCCcceEEEEEeeccCCc--hhhHHHHhCCCcchHHHH
Confidence 34466677777878765543332222 11123444444445555545556677 999999999998887776
No 310
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=49.48 E-value=15 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=16.1
Q ss_pred CHHHHHHHHhhCCcEEEEEcCC
Q psy4436 60 DVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
.-.+.|+.|...|++|.|+|-.
T Consensus 3 ~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 3 DYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHTT-EEEE--HH
T ss_pred HHHHHHHHHHHCCCeEEecCcH
Confidence 3467899999999999999975
No 311
>KOG0391|consensus
Probab=49.35 E-value=1.4e+02 Score=28.77 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCch-hHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCC
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTE-MLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~-~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
..-+|+.|+..|.++.|+|--.. -++...+|..+|.. ++..=..-+.+-=+.+++++|.++.
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgyl----Y~RLDg~t~vEqRQaLmerFNaD~R 1327 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYL----YVRLDGNTSVEQRQALMERFNADRR 1327 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceE----EEEecCCccHHHHHHHHHHhcCCCc
Confidence 44578999999999999996422 14445555555433 2211112234445556666665444
No 312
>PRK10026 arsenate reductase; Provisional
Probab=49.34 E-value=38 Score=23.42 Aligned_cols=12 Identities=0% Similarity=-0.044 Sum_probs=5.5
Q ss_pred HHHHHHHhcCcc
Q psy4436 86 RAHQLVDLFNWN 97 (171)
Q Consensus 86 ~~~~~l~~~~l~ 97 (171)
.+..+|+..++.
T Consensus 17 KA~~wL~~~gi~ 28 (141)
T PRK10026 17 NTLEMIRNSGTE 28 (141)
T ss_pred HHHHHHHHCCCC
Confidence 344444444444
No 313
>PRK10060 RNase II stability modulator; Provisional
Probab=48.99 E-value=1.2e+02 Score=26.48 Aligned_cols=109 Identities=9% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-cce--eeEe-cCCcH----HHHHHHHHHhCCCCCcEEE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-FDH--KEIF-PGQKT----THFANLKKATGIEYKDMVF 130 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-fd~--~~~~-~~~k~----~~~~~~~~~~~~~~~~~l~ 130 (171)
+.+.+.++.|++.|+++++=--+....... .+..+.++.. +|. +... ..+.. ..+-.+++.+|+. ++.
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~-~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~---viA 616 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLS-QLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQ---VIA 616 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHH-HHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCc---EEE
Confidence 346788999999999999965333313333 5666554311 111 1111 12222 2234444555542 222
Q ss_pred Ec-CCcccccccccCCce---EEEeCCCCcHHHHHHHHHHhhhcC
Q psy4436 131 FD-DEERNSHDVSPLGVT---CIHVKDGMSHSVLHKGLKQWASKN 171 (171)
Q Consensus 131 vg-D~~~di~~a~~~G~~---~i~v~~g~~~~~~~~~~~~~~~~~ 171 (171)
=| .+.......++.|+. ++.+......+++++.+++|.+++
T Consensus 617 eGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~~~~ 661 (663)
T PRK10060 617 EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYLKRK 661 (663)
T ss_pred ecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhhhcc
Confidence 11 233357778888874 555566778889999999988764
No 314
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=48.86 E-value=49 Score=26.02 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=28.1
Q ss_pred CCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 51 GGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+..+.|++.++++.+++.|..+.++||...
T Consensus 79 ~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 79 PGGEPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred eCccccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 345566789999999999999999999999865
No 315
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=48.85 E-value=84 Score=21.45 Aligned_cols=108 Identities=7% Similarity=-0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCcEEEEEcC-CchhHHHHHHHHhcCccccc-ceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc---
Q psy4436 61 VPAILKYLKQNNCLVAAASR-TTEMLRAHQLVDLFNWNQHF-DHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE--- 135 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~-~~~~~~~~~~l~~~~l~~~f-d~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~--- 135 (171)
..-+...|+.+|+.++.+-. .+..+..+ .....+..... +.......+....+...+++.+.+ +-.+++|-..
T Consensus 20 ~~iv~~~lr~~G~eVi~LG~~vp~e~i~~-~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~ 97 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGVMTSQEEFID-AAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVGGNLVVG 97 (137)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHH-HHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEECCCCCC
Confidence 33455678889999877764 44423333 55555433111 111111111222233333444432 3456777665
Q ss_pred ---c--cccccccCCceEEEeCCCCcHHHHHHHHHHhhhcC
Q psy4436 136 ---R--NSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASKN 171 (171)
Q Consensus 136 ---~--di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~~ 171 (171)
+ +...+++.|+..+ +..+...+++-..+++...+|
T Consensus 98 ~~~~~~~~~~l~~~G~~~v-f~~~~~~~~i~~~l~~~~~~~ 137 (137)
T PRK02261 98 KHDFEEVEKKFKEMGFDRV-FPPGTDPEEAIDDLKKDLNQR 137 (137)
T ss_pred ccChHHHHHHHHHcCCCEE-ECcCCCHHHHHHHHHHHhccC
Confidence 2 4567899997444 445667777777776665554
No 316
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.73 E-value=27 Score=26.42 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.8
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHH
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAH 88 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~ 88 (171)
.+.+++.+|+++ +.|+|+|.+.+ +.++
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmq-QAaR 213 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQ-QAAR 213 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHH-HHHH
Confidence 367899999966 99999999977 5554
No 317
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=48.53 E-value=24 Score=26.86 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=24.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+.+|+..++++.|+++|+++++..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 3589999999999999999999998644
No 318
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=48.34 E-value=1e+02 Score=22.60 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=25.9
Q ss_pred cEEEEcCCcccccccccCCceEEEeCCCCcHHHHHHHHHHh
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQW 167 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~ 167 (171)
.++.+|....+ .+++.|+..+.++...+.+.+.+.+.++
T Consensus 209 ~~~aiG~~Ta~--~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 209 KAVVIGERTAE--ALRELGIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred eEEEeCHHHHH--HHHHcCCCcceecCCCChHHHHHHHHHh
Confidence 35666666554 4567888878887767777676666654
No 319
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=48.10 E-value=60 Score=24.11 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=54.0
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce----eeEecCCcHHHHHHHH---HHhCCCCCcE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH----KEIFPGQKTTHFANLK---KATGIEYKDM 128 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~----~~~~~~~k~~~~~~~~---~~~~~~~~~~ 128 (171)
+....-.++++.|++.|+++.+--=-+..+ +. .....|-. |... ++....+-...++.+. +.++.+ +
T Consensus 85 P~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Q-a~-~Aa~aGa~-yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~---t 158 (213)
T TIGR00875 85 PMTSEGLKAVKILKKEGIKTNVTLVFSAAQ-AL-LAAKAGAT-YVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPD---T 158 (213)
T ss_pred CCCHHHHHHHHHHHHCCCceeEEEecCHHH-HH-HHHHcCCC-EEEeecchHHHcCCCHHHHHHHHHHHHHHcCCC---C
Confidence 334445788999999999886333221211 11 22233422 2211 1111222233344444 444443 3
Q ss_pred EEEcCCcccccccc---cCCceEEEeCC---------CCcHHHHHHHHHHhhh
Q psy4436 129 VFFDDEERNSHDVS---PLGVTCIHVKD---------GMSHSVLHKGLKQWAS 169 (171)
Q Consensus 129 l~vgD~~~di~~a~---~~G~~~i~v~~---------g~~~~~~~~~~~~~~~ 169 (171)
-.++-|.++..... .+|+..+-++. ..+...++...++|.+
T Consensus 159 kIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~~ 211 (213)
T TIGR00875 159 EVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDWNA 211 (213)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 35566777554444 68999888764 3334445555556654
No 320
>KOG1014|consensus
Probab=47.87 E-value=1e+02 Score=24.40 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHhhCCcEEEEEcCCchh--HHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhC
Q psy4436 63 AILKYLKQNNCLVAAASRTTEM--LRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATG 122 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~--~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~ 122 (171)
+...+|-++|+.++++|.+... ...+.+.+..+.. ..-....+.+++. .|+++.+.+.
T Consensus 64 ayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~ve-v~~i~~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 64 AYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVE-VRIIAIDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcE-EEEEEEecCCCch-hHHHHHHHhc
Confidence 4578888999999999987431 3334444445522 2222234556665 6777777664
No 321
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.70 E-value=21 Score=23.42 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTT 82 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~ 82 (171)
.+++.+.++.++++|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678899999999999999999753
No 322
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=47.62 E-value=26 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTT 82 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~ 82 (171)
++++.++++.|++.+++++++||.+
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~ 146 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKG 146 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 5777888888888888888888754
No 323
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=47.56 E-value=1.6e+02 Score=24.37 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHHHHhhC--CcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-c
Q psy4436 61 VPAILKYLKQN--NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER-N 137 (171)
Q Consensus 61 v~~~l~~L~~~--g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~-d 137 (171)
+..++++|++. ++++.+.|..+. ..+..-+.++-. ......|-..+-...+.++. +.|+-+++++-..| +
T Consensus 65 ~~pLv~~l~~~~P~~~ilvTt~T~T--g~e~a~~~~~~~---v~h~YlP~D~~~~v~rFl~~--~~P~l~Ii~EtElWPn 137 (419)
T COG1519 65 ALPLVRALRERFPDLRILVTTMTPT--GAERAAALFGDS---VIHQYLPLDLPIAVRRFLRK--WRPKLLIIMETELWPN 137 (419)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCcc--HHHHHHHHcCCC---eEEEecCcCchHHHHHHHHh--cCCCEEEEEeccccHH
Confidence 56788999988 667766665433 223233444422 11134565556567777764 57999999999999 3
Q ss_pred -ccccccCCceEEEeCC
Q psy4436 138 -SHDVSPLGVTCIHVKD 153 (171)
Q Consensus 138 -i~~a~~~G~~~i~v~~ 153 (171)
+..+++.|++.+.++.
T Consensus 138 li~e~~~~~~p~~LvNa 154 (419)
T COG1519 138 LINELKRRGIPLVLVNA 154 (419)
T ss_pred HHHHHHHcCCCEEEEee
Confidence 8888899999999965
No 324
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=47.54 E-value=41 Score=26.76 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=47.9
Q ss_pred CeeeeCCCHHHHHHHHhhCCc-EEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 53 AIIKYYRDVPAILKYLKQNNC-LVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~-~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
.+-.+-.++.++++.+++.++ .+.+.||+..-......++..|+...-.+.+ --+++.|.++-. .+. +
T Consensus 68 GEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLD---sld~e~f~~IT~-~~~-------~ 136 (322)
T COG2896 68 GEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLD---SLDPEKFRKITG-RDR-------L 136 (322)
T ss_pred CCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecc---cCCHHHHHHHhC-CCc-------H
Confidence 455567889999999998765 4677778755444455677777774432222 223444655541 111 2
Q ss_pred cCCcccccccccCCc
Q psy4436 132 DDEERNSHDVSPLGV 146 (171)
Q Consensus 132 gD~~~di~~a~~~G~ 146 (171)
..-...+.+|.++|.
T Consensus 137 ~~Vl~GI~~A~~~Gl 151 (322)
T COG2896 137 DRVLEGIDAAVEAGL 151 (322)
T ss_pred HHHHHHHHHHHHcCC
Confidence 222345666666665
No 325
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=47.50 E-value=92 Score=23.55 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=58.7
Q ss_pred hhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEe-------cCCcHHHHHHHHHHhCCC--CCcEE---EEcCCcc
Q psy4436 69 KQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF-------PGQKTTHFANLKKATGIE--YKDMV---FFDDEER 136 (171)
Q Consensus 69 ~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~-------~~~k~~~~~~~~~~~~~~--~~~~l---~vgD~~~ 136 (171)
+..|..+.+-++-+. ..++..++-.+ +|.|.+... ++.-....-.+.+..++. |-=++ ++++..-
T Consensus 16 r~~G~T~vldkg~~p-~f~~D~~~vag--dyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kv 92 (258)
T COG1809 16 RTFGMTVVLDKGLGP-RFVEDVLKVAG--DYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKV 92 (258)
T ss_pred ccCCeEEEEeCCCCh-HHHHHHHHhhh--hheeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcccH
Confidence 345777776666644 77777777766 566666321 111122233333445543 22222 2333333
Q ss_pred --cccccccCCceEEEeCCCC---cHHHHHHHHHHhhhc
Q psy4436 137 --NSHDVSPLGVTCIHVKDGM---SHSVLHKGLKQWASK 170 (171)
Q Consensus 137 --di~~a~~~G~~~i~v~~g~---~~~~~~~~~~~~~~~ 170 (171)
-+..|+.+|+.++-+++|+ +.++..+..++..++
T Consensus 93 deyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~ 131 (258)
T COG1809 93 DEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDE 131 (258)
T ss_pred HHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhc
Confidence 3788999999999999875 467777788777654
No 326
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=46.96 E-value=7.6 Score=26.30 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.1
Q ss_pred cCCcEEEEeCCCCCC
Q psy4436 14 KFPKLAVFDLDHTLW 28 (171)
Q Consensus 14 ~~~k~vvfDlDgTL~ 28 (171)
+.|..|+||+.+||-
T Consensus 43 ~~P~iV~FDmK~Tld 57 (128)
T PRK13717 43 NAPVTAAFNMKQTVD 57 (128)
T ss_pred CCCeEEEEehHHHHH
Confidence 468999999999994
No 327
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.92 E-value=39 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+..+.++.++++|.+++.+|++..
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 5678899999999999999998755
No 328
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=46.88 E-value=1.1e+02 Score=22.76 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=51.6
Q ss_pred HHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec---C--CcH---HHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 63 AILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP---G--QKT---THFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~---~--~k~---~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
....++...+..|++-+++ . +.+. ..++.+ .+|+..-.+++ | +.+ +.+.++.+...++ ++.||--
T Consensus 95 ~~ar~~~~~~~iIG~S~h~-~-eea~-~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP---~vAIGGi 167 (211)
T COG0352 95 AEARELLGPGLIIGLSTHD-L-EEAL-EAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIP---VVAIGGI 167 (211)
T ss_pred HHHHHhcCCCCEEEeecCC-H-HHHH-HHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCC---EEEEcCC
Confidence 3445566667788888885 4 3233 344555 44443222232 2 122 4455554444443 8888886
Q ss_pred cc-cccccccCCceEEEeCCCC
Q psy4436 135 ER-NSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 135 ~~-di~~a~~~G~~~i~v~~g~ 155 (171)
-. ++....+.|+..+.+-.+.
T Consensus 168 ~~~nv~~v~~~Ga~gVAvvsai 189 (211)
T COG0352 168 NLENVPEVLEAGADGVAVVSAI 189 (211)
T ss_pred CHHHHHHHHHhCCCeEEehhHh
Confidence 66 8999999999999996543
No 329
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=46.67 E-value=21 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+++.++++.++++|.+++.+|++..
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999998755
No 330
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=46.48 E-value=1.1e+02 Score=25.13 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=51.5
Q ss_pred HHHHHHHHhhCCcEEEE-EcCCchh-HHHHHHHHhcCcccccceeeEe-cCCcHHHHHHHHHHhCCCCCcEEEEcCCcc-
Q psy4436 61 VPAILKYLKQNNCLVAA-ASRTTEM-LRAHQLVDLFNWNQHFDHKEIF-PGQKTTHFANLKKATGIEYKDMVFFDDEER- 136 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i-~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~-~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~- 136 (171)
+..+++..++.|.++++ +.|...+ +..+.+ ..+. ++....... +......+.++.+--+..++-.+.++-+..
T Consensus 265 i~~ai~~akk~GikvgVD~lnp~tp~e~i~~l--~~~v-D~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~ 341 (391)
T PRK13307 265 IEKAIHEAQKTGIYSILDMLNVEDPVKLLESL--KVKP-DVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRV 341 (391)
T ss_pred HHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHh--hCCC-CEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCH
Confidence 66789999999999999 7874321 222222 1221 121111100 100111233332211223343455554444
Q ss_pred -cccccccCCceEEEeCCCC-cHHHHHHHHHHh
Q psy4436 137 -NSHDVSPLGVTCIHVKDGM-SHSVLHKGLKQW 167 (171)
Q Consensus 137 -di~~a~~~G~~~i~v~~g~-~~~~~~~~~~~~ 167 (171)
++..+.++|...+.+..+. ..+...+.++++
T Consensus 342 eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l 374 (391)
T PRK13307 342 ENVEEALKAGADILVVGRAITKSKDVRRAAEDF 374 (391)
T ss_pred HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 7888889999888875542 222334444444
No 331
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=46.36 E-value=26 Score=22.43 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCcEEEE-cCCcccccccccCCceEEEeCCCCcHH-HHHHHHHH
Q psy4436 124 EYKDMVFF-DDEERNSHDVSPLGVTCIHVKDGMSHS-VLHKGLKQ 166 (171)
Q Consensus 124 ~~~~~l~v-gD~~~di~~a~~~G~~~i~v~~g~~~~-~~~~~~~~ 166 (171)
.+..++.+ ||+..-+..|...|+.++.+..|...+ ++.+.+++
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~ 83 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKE 83 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHH
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH
Confidence 34888888 999888999999999999998776543 44444443
No 332
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=46.19 E-value=1.4e+02 Score=23.25 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=39.9
Q ss_pred CHHHHHHHHhhCCc-E------------EEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCC
Q psy4436 60 DVPAILKYLKQNNC-L------------VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 60 ~v~~~l~~L~~~g~-~------------i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
+-..++++|+++|+ . ..|++.-..+...+..++..|+. +.....|...-.+...+++.-.--
T Consensus 40 HN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~gl~-----viDaTCP~V~kv~~~v~~~~~~Gy 114 (280)
T TIGR00216 40 HNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLE-----VIDATCPLVTKVHNAVKKYAKEGY 114 (280)
T ss_pred cCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCe-----EEeCCCcccHHHHHHHHHHHhCCC
Confidence 44566667777774 2 23333222334445466666654 212234444446666666666667
Q ss_pred cEEEEcCCcc
Q psy4436 127 DMVFFDDEER 136 (171)
Q Consensus 127 ~~l~vgD~~~ 136 (171)
+++++||.-.
T Consensus 115 ~iiiiG~~~H 124 (280)
T TIGR00216 115 HVILIGKKNH 124 (280)
T ss_pred EEEEEeCCCC
Confidence 8899998776
No 333
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.93 E-value=33 Score=23.31 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=7.8
Q ss_pred HHHHHHhhCCcEEEEEcC
Q psy4436 63 AILKYLKQNNCLVAAASR 80 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~ 80 (171)
++++..++.+..++.+|+
T Consensus 44 ~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSS 61 (132)
T ss_pred HHHHHHHHcCCCEEEEcC
Confidence 444444444444444443
No 334
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.86 E-value=27 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
+.||+..++++.|+++|+++++....
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 45899999999999999999987753
No 335
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=45.84 E-value=22 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+.+.++++.++++|.+++++|++..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 5578899999999999999999755
No 336
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=45.64 E-value=1.3e+02 Score=22.67 Aligned_cols=93 Identities=6% Similarity=0.021 Sum_probs=54.0
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHh----CCCCCcEEEEc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKAT----GIEYKDMVFFD 132 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~----~~~~~~~l~vg 132 (171)
...++|+.+|+.|.+.+++=|...+ +....++.....--....--++. +--++.+.++.+-- .-.++-.+.||
T Consensus 96 ~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVD 175 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVD 175 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4567899999999999888775332 44444555444321111111121 22234444444311 11334567888
Q ss_pred CCcc--cccccccCCceEEEeC
Q psy4436 133 DEER--NSHDVSPLGVTCIHVK 152 (171)
Q Consensus 133 D~~~--di~~a~~~G~~~i~v~ 152 (171)
-+.+ ++....++|+..+.+.
T Consensus 176 GGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 176 GSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred CCCCHHHHHHHHHcCCCEEEEC
Confidence 8887 6778888999877764
No 337
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.39 E-value=22 Score=21.40 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAAS 79 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S 79 (171)
.+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678899999999999999988
No 338
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=45.27 E-value=39 Score=21.78 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
.+...++.+++++.|+.++.+|..+. +....+++..++.
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHTCS
T ss_pred hhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhccc
Confidence 34566777788888999999998766 6677788888854
No 339
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=44.67 E-value=50 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc
Q psy4436 62 PAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF 100 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f 100 (171)
...++.++..|.++++++.++. .+..+...|+...|
T Consensus 66 ~~~~~~~~~~g~~~~l~~i~p~---v~~~~~~~gl~~~~ 101 (117)
T COG1366 66 VALLKSARLRGVELVLVGIQPE---VARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHhcCCeEEEEeCCHH---HHHHHHHhCchhhc
Confidence 4566888889999998888744 55589999999777
No 340
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=44.60 E-value=1.2e+02 Score=21.92 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-----ccee-------------------eEecCCcHHHHHH
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-----FDHK-------------------EIFPGQKTTHFAN 116 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-----fd~~-------------------~~~~~~k~~~~~~ 116 (171)
+..+.+.+.+.|+++.+++-... .+..+.+..+.... +... +..+.-....+..
T Consensus 35 l~~~~~~~~~~g~~v~~~apT~~--Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ 112 (196)
T PF13604_consen 35 LKALAEALEAAGKRVIGLAPTNK--AAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLAR 112 (196)
T ss_dssp HHHHHHHHHHTT--EEEEESSHH--HHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCcHH--HHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHH
Confidence 45567778889999999998754 33435555454321 0000 1111222455777
Q ss_pred HHHHhCCCCCcEEEEcCCcc
Q psy4436 117 LKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 117 ~~~~~~~~~~~~l~vgD~~~ 136 (171)
+++...-...+++++||...
T Consensus 113 ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp HHHHS-T-T-EEEEEE-TTS
T ss_pred HHHHHHhcCCEEEEECCcch
Confidence 77766666678999999763
No 341
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=44.53 E-value=22 Score=19.37 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCcEEEEEcCCchhHHHHHHHH
Q psy4436 62 PAILKYLKQNNCLVAAASRTTEMLRAHQLVD 92 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~ 92 (171)
.++.++|++.|++.+-+|.+.+ ......|.
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR-~vy~kkL~ 38 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTR-KLYEKKLR 38 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchH-HHHHHHHH
Confidence 4678889999999999998877 33333443
No 342
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=44.47 E-value=50 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=27.2
Q ss_pred eeCCC-HHHHHHHHhhCCcEEEEEcCCch---hHHHHHHHHh
Q psy4436 56 KYYRD-VPAILKYLKQNNCLVAAASRTTE---MLRAHQLVDL 93 (171)
Q Consensus 56 ~~~~~-v~~~l~~L~~~g~~i~i~S~~~~---~~~~~~~l~~ 93 (171)
.+.++ +.++++.+++.|+++++.||+.. ++....+++.
T Consensus 82 ll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~ 123 (246)
T PRK11145 82 ILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDV 123 (246)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHh
Confidence 34566 45899999999999999999863 2444444443
No 343
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.42 E-value=47 Score=21.64 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=22.5
Q ss_pred EEEcCCchhHHHHHHHHhcCcccccceeeEec-CCcHHHHHHHHHHhCCCCCcE
Q psy4436 76 AAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP-GQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 76 ~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~-~~k~~~~~~~~~~~~~~~~~~ 128 (171)
+-.++++.-..+..+|+..|+. |..++... .+..+.+..++++.+.+++++
T Consensus 4 Y~~~~C~~c~ka~~~L~~~~i~--~~~idi~~~~~~~~el~~~~~~~~~~~~~l 55 (111)
T cd03036 4 YEYPKCSTCRKAKKWLDEHGVD--YTAIDIVEEPPSKEELKKWLEKSGLPLKKF 55 (111)
T ss_pred EECCCCHHHHHHHHHHHHcCCc--eEEecccCCcccHHHHHHHHHHcCCCHHHH
Confidence 3334443334445555555554 33332222 223344555555555544433
No 344
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.92 E-value=92 Score=24.83 Aligned_cols=111 Identities=11% Similarity=-0.020 Sum_probs=62.6
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceee--EecCC-c----------HHHHHHHHHH
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE--IFPGQ-K----------TTHFANLKKA 120 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~--~~~~~-k----------~~~~~~~~~~ 120 (171)
.-.++| +..+.++|++.|+.+.+++.... .....+...++. |..+. ..+.. . ...+.++.+.
T Consensus 12 GGHi~P-ala~a~~l~~~g~~v~~vg~~~~--~e~~l~~~~g~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 86 (352)
T PRK12446 12 AGHVTP-NLAIIPYLKEDNWDISYIGSHQG--IEKTIIEKENIP--YYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVR 86 (352)
T ss_pred HHHHHH-HHHHHHHHHhCCCEEEEEECCCc--cccccCcccCCc--EEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 344456 56788899999999988876533 233355555543 11111 11111 0 0111111111
Q ss_pred -hCCCCCcEEEEcCCcc--cccccccCCceEEEeCCCCcHHHHHHHHHHhhh
Q psy4436 121 -TGIEYKDMVFFDDEER--NSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWAS 169 (171)
Q Consensus 121 -~~~~~~~~l~vgD~~~--di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~ 169 (171)
-..+|+-++-+|.-.. -+.+|+-.|+.++............+.+..|++
T Consensus 87 ~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~ 138 (352)
T PRK12446 87 IRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIALRFAS 138 (352)
T ss_pred HHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhC
Confidence 2356776666666554 588889999999888665544444556666654
No 345
>KOG1513|consensus
Probab=43.57 E-value=89 Score=28.49 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=73.4
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNS 138 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di 138 (171)
..|.++=+.|....+-.+-+|+.+.|.... .+-++|+.. ++-+.|.-.-|-.+.++-|+..=+|+..|=....+
T Consensus 433 ~tVLdLQk~LP~ARVVYASATGAsEPrNMa-YM~RLGlWG-----egtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGm 506 (1300)
T KOG1513|consen 433 KTVLDLQKKLPNARVVYASATGASEPRNMA-YMVRLGLWG-----EGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGM 506 (1300)
T ss_pred HhHHHHHHhCCCceEEEeeccCCCCcchhh-hhhhhcccc-----CCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhh
Confidence 346677777777777777888887765444 667777652 23334556668888899999999999999999999
Q ss_pred cccccCCceEEEeCC---CCc---HHHHHHHHHHhhh
Q psy4436 139 HDVSPLGVTCIHVKD---GMS---HSVLHKGLKQWAS 169 (171)
Q Consensus 139 ~~a~~~G~~~i~v~~---g~~---~~~~~~~~~~~~~ 169 (171)
.-|+++-++.+-++- ..+ .+.+.+..+-|+|
T Consensus 507 YiARQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW~e 543 (1300)
T KOG1513|consen 507 YIARQLSFKGVSFRIEEVPLSKEFRKVYNRAAELWAE 543 (1300)
T ss_pred hhhhhccccCceEEEEecccCHHHHHHHHHHHHHHHH
Confidence 999998776555531 222 2344556667765
No 346
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=43.49 E-value=68 Score=27.45 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~ 102 (171)
..++.++++++|+++.++.-++. .+..+++.++.+.++.
T Consensus 515 L~~l~~~l~~~g~~l~l~~~~~~---v~~~l~~~gl~~~~~~ 553 (563)
T TIGR00815 515 LEELRKELKARGIQLLLANPNKA---VRSTLKRGGLVELIGE 553 (563)
T ss_pred HHHHHHHHHHcCCEEEEecCChH---HHHHHHHCCchhhcCC
Confidence 45677888899999998887633 6668999888776644
No 347
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=43.29 E-value=50 Score=23.87 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc
Q psy4436 64 ILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH 99 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~ 99 (171)
+...|..+|++.+++|.... .+..+.++|+...
T Consensus 108 l~~~L~~~g~~w~vfTaT~~---lr~~~~rlgl~~~ 140 (179)
T PF12261_consen 108 LAQLLAQQGFEWVVFTATRQ---LRNLFRRLGLPPT 140 (179)
T ss_pred HHHHHHHCCCCEEEEeCCHH---HHHHHHHcCCCce
Confidence 45778889999999999844 7889999998843
No 348
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=43.28 E-value=1.5e+02 Score=22.64 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec-CCcHHHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 64 ILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP-GQKTTHFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~-~~k~~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
+-+.++++||.+.+++....++.. ..++.+. ....|.+...+ ......+....+. +++ ++++|..
T Consensus 23 Ie~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~-~~~vDGiI~~s~~~~~~~l~~~~~~-~iP---vV~~~~~ 88 (279)
T PF00532_consen 23 IEQEAREHGYQLLLCNTGDDEEKE-EYIELLL-QRRVDGIILASSENDDEELRRLIKS-GIP---VVLIDRY 88 (279)
T ss_dssp HHHHHHHTTCEEEEEEETTTHHHH-HHHHHHH-HTTSSEEEEESSSCTCHHHHHHHHT-TSE---EEEESS-
T ss_pred HHHHHHHcCCEEEEecCCCchHHH-HHHHHHH-hcCCCEEEEecccCChHHHHHHHHc-CCC---EEEEEec
Confidence 446778899999876654443444 4555542 23455553333 2332445555554 432 5555544
No 349
>PLN03017 trehalose-phosphatase
Probab=42.95 E-value=95 Score=25.22 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHhCCCC---CcEEEEcCCcccccccccC---C-ceEEEeC
Q psy4436 109 QKTTHFANLKKATGIEY---KDMVFFDDEERNSHDVSPL---G-VTCIHVK 152 (171)
Q Consensus 109 ~k~~~~~~~~~~~~~~~---~~~l~vgD~~~di~~a~~~---G-~~~i~v~ 152 (171)
.|....+.+++.++... .-.+|+||...|-.+.+.+ | ..+|.|.
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 57788999999988653 3589999999987766654 2 2455554
No 350
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=42.85 E-value=26 Score=24.83 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.+++.|.+++.+|++..
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999998755
No 351
>PRK13937 phosphoheptose isomerase; Provisional
Probab=42.70 E-value=26 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+...
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57789999999999999999998755
No 352
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=42.61 E-value=1e+02 Score=23.91 Aligned_cols=73 Identities=10% Similarity=0.045 Sum_probs=44.9
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCc-ccc-------cceeeEec-------------CCc-HHHHHH
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNW-NQH-------FDHKEIFP-------------GQK-TTHFAN 116 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l-~~~-------fd~~~~~~-------------~~k-~~~~~~ 116 (171)
..+.+-|..|++.|.+++++|..-. ..-...+...+. ..- +.... .| .+. ...|+.
T Consensus 34 ~~l~~~i~~l~~~g~~vilVssGAv-~~G~~~l~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~qa~aa~gq~~L~~~y~~ 111 (284)
T cd04256 34 ASIVEQVSELQSQGREVILVTSGAV-AFGKQRLRHEILLSSSMRQTLKSGQLKD-MPQMELDGRACAAVGQSGLMALYEA 111 (284)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeCcH-HhChHHhhhccccccchhhhcccccccC-CcchhHHHHHHHHcccHHHHHHHHH
Confidence 4466778888899999998887655 455545544332 000 00000 01 111 366889
Q ss_pred HHHHhCCCCCcEEEEcC
Q psy4436 117 LKKATGIEYKDMVFFDD 133 (171)
Q Consensus 117 ~~~~~~~~~~~~l~vgD 133 (171)
.+.++++.+.+++.-.+
T Consensus 112 ~f~~~~~~~~q~llt~~ 128 (284)
T cd04256 112 MFTQYGITVAQVLVTKP 128 (284)
T ss_pred HHHHcCCcHHHeeeecc
Confidence 99999999999876555
No 353
>KOG2469|consensus
Probab=42.48 E-value=13 Score=30.41 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.5
Q ss_pred CCcEEEEeCCCCCCCcee
Q psy4436 15 FPKLAVFDLDHTLWPFHV 32 (171)
Q Consensus 15 ~~k~vvfDlDgTL~~~~~ 32 (171)
.+.++-||+|+||...++
T Consensus 26 ~i~~~GfdmDyTL~~Y~~ 43 (424)
T KOG2469|consen 26 NIGIVGFDMDYTLARYNL 43 (424)
T ss_pred cCcEEeeccccchhhhcc
Confidence 378999999999976443
No 354
>PRK15108 biotin synthase; Provisional
Probab=42.48 E-value=18 Score=28.90 Aligned_cols=42 Identities=7% Similarity=-0.143 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHF 100 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~f 100 (171)
++.+.++++.+++.|+.++ +|+..........|+..|++.+-
T Consensus 110 ~e~i~~~i~~ik~~~i~v~-~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 110 MPYLEQMVQGVKAMGLETC-MTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred HHHHHHHHHHHHhCCCEEE-EeCCcCCHHHHHHHHHcCCCEEe
Confidence 4567788888888888775 66654434455577788887543
No 355
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=42.38 E-value=27 Score=24.18 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+++.
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46788999999999999999998755
No 356
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=41.94 E-value=64 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCCeeeeCCCHHHHHHHHhhCCcEEEEE-cCCc---hhHHHHHHHHhcCccc
Q psy4436 51 GGAIIKYYRDVPAILKYLKQNNCLVAAA-SRTT---EMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l~~L~~~g~~i~i~-S~~~---~~~~~~~~l~~~~l~~ 98 (171)
.+.....+|.+.++++.+++.|+++++. ||+. .++... .+..++++.
T Consensus 81 GGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~-~L~~~gld~ 131 (404)
T TIGR03278 81 GGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAE-FLIDNGVRE 131 (404)
T ss_pred CCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHH-HHHHcCCCE
Confidence 4445667899999999999999999995 8853 223333 455555553
No 357
>KOG1618|consensus
Probab=41.86 E-value=28 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCCcEEEEcCCcc-cccccc---------------cCCceEEEeCCC
Q psy4436 124 EYKDMVFFDDEER-NSHDVS---------------PLGVTCIHVKDG 154 (171)
Q Consensus 124 ~~~~~l~vgD~~~-di~~a~---------------~~G~~~i~v~~g 154 (171)
+++.+.+|||++. |+..|. .-||.+|+|..|
T Consensus 296 ~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 296 PIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred CcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 4667888999999 999986 678999999764
No 358
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.84 E-value=35 Score=26.87 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.||+..+.+++|+++|+++++..+
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4589999999999999999987653
No 359
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=41.61 E-value=1.5e+02 Score=22.20 Aligned_cols=89 Identities=6% Similarity=0.076 Sum_probs=56.1
Q ss_pred eeeCCCHH-HHHHHHhhCCcEEEEEcCCchhH-----HHHHHHHhcCcccccceeeEec--CCcHHHHHHHHHHhCCCCC
Q psy4436 55 IKYYRDVP-AILKYLKQNNCLVAAASRTTEML-----RAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 55 ~~~~~~v~-~~l~~L~~~g~~i~i~S~~~~~~-----~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~~~~~~~~ 126 (171)
..+.|++. ++...+++.|++-.|+..-.. . ..+..++.+|+...|... .+. +.+-..+...++.+|-+.=
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~-~~g~~~~lk~~~e~~gi~~~~P~~-~CsL~~~~~p~i~~F~~~fGkP~~ 135 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESP-KPGLRRQLKKQLEEFGIEVEFPKP-FCSLEENGNPQIDEFAEYFGKPKV 135 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCC-ccchHHHHHHHHHhcCceeecCcc-ccccCCCCChhHHHHHHHhCCceE
Confidence 35678776 566777889988887765433 3 566678888877555433 122 2233557777777897544
Q ss_pred cEEEEcCCcccccccccCC
Q psy4436 127 DMVFFDDEERNSHDVSPLG 145 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G 145 (171)
++..=+|...++..-+.+-
T Consensus 136 ei~v~~~~I~~V~VlR~aP 154 (217)
T PF02593_consen 136 EIEVENGKIKDVKVLRSAP 154 (217)
T ss_pred EEEecCCcEEEEEEEecCC
Confidence 5544455555777777743
No 360
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.44 E-value=36 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.||+..+++++|+++|+++++..+
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 5689999999999999999988554
No 361
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=41.33 E-value=52 Score=25.66 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCCccccccccc------CCceEEEeCC
Q psy4436 108 GQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP------LGVTCIHVKD 153 (171)
Q Consensus 108 ~~k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~------~G~~~i~v~~ 153 (171)
-|.++.|..++.++|++.+..+.+=|.....-+++. .|..-+.+-+
T Consensus 72 lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLd 123 (285)
T COG2897 72 LPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILD 123 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEec
Confidence 466789999999999999999999999888887776 7776666633
No 362
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=41.32 E-value=1.8e+02 Score=22.96 Aligned_cols=71 Identities=6% Similarity=-0.037 Sum_probs=38.3
Q ss_pred CHHHHHHHHhhCCcE-------------EEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCC
Q psy4436 60 DVPAILKYLKQNNCL-------------VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYK 126 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~-------------i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~ 126 (171)
+-...+++|+++|++ +.|-+.+ .+...+..++..|+. +.....|...-.+...+++.-.--
T Consensus 41 HN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHG-v~~~~~~~~~~~g~~-----viDaTCP~V~k~~~~v~~~~~~Gy 114 (298)
T PRK01045 41 HNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHG-VSPAVREEAKERGLT-----VIDATCPLVTKVHKEVARMSREGY 114 (298)
T ss_pred cCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCC-CCHHHHHHHHHCCCe-----EEeCCCccchHHHHHHHHHHhCCC
Confidence 344566666666652 3333333 223344456655544 212334444446666666655566
Q ss_pred cEEEEcCCcc
Q psy4436 127 DMVFFDDEER 136 (171)
Q Consensus 127 ~~l~vgD~~~ 136 (171)
+++++||.-.
T Consensus 115 ~vvi~G~~~H 124 (298)
T PRK01045 115 EIILIGHKGH 124 (298)
T ss_pred EEEEEeCCCC
Confidence 7888888766
No 363
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=41.19 E-value=1.4e+02 Score=21.71 Aligned_cols=96 Identities=14% Similarity=-0.038 Sum_probs=52.8
Q ss_pred HHHHHhhCCcEEEEEc-CCc-----------hhHHHHHHHHhcCcccccceeeEecCCc-HHHHHHHHHHhCCCCCcEEE
Q psy4436 64 ILKYLKQNNCLVAAAS-RTT-----------EMLRAHQLVDLFNWNQHFDHKEIFPGQK-TTHFANLKKATGIEYKDMVF 130 (171)
Q Consensus 64 ~l~~L~~~g~~i~i~S-~~~-----------~~~~~~~~l~~~~l~~~fd~~~~~~~~k-~~~~~~~~~~~~~~~~~~l~ 130 (171)
++..++++|+.+..++ ..+ ..+.++...+.+|++-..-... ...+. .+.+...+++..-.--+.+.
T Consensus 15 al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~-~~~e~~~~~l~~~l~~~~~~g~~~vv 93 (194)
T cd01994 15 ALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEIS-GEEEDEVEDLKELLRKLKEEGVDAVV 93 (194)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCC-CCchHHHHHHHHHHHHHHHcCCCEEE
Confidence 4566667887654333 211 1145566677788773221110 11111 13344444443322346889
Q ss_pred EcCCcccc------cccccCCceEEEeCCCCcHHHH
Q psy4436 131 FDDEERNS------HDVSPLGVTCIHVKDGMSHSVL 160 (171)
Q Consensus 131 vgD~~~di------~~a~~~G~~~i~v~~g~~~~~~ 160 (171)
.||...|. ..+.++|+..+.=-|+.+.+++
T Consensus 94 ~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~l 129 (194)
T cd01994 94 FGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEEL 129 (194)
T ss_pred ECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHH
Confidence 99987654 4456689988888888876655
No 364
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=40.87 E-value=1.2e+02 Score=21.63 Aligned_cols=90 Identities=10% Similarity=-0.027 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCcEEEE--EcCCchhHHHHHHHHhcCccc--ccceee--Ee-cCCcHHHHHHHHHHhCCCCCcEEEE-c
Q psy4436 61 VPAILKYLKQNNCLVAA--ASRTTEMLRAHQLVDLFNWNQ--HFDHKE--IF-PGQKTTHFANLKKATGIEYKDMVFF-D 132 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i--~S~~~~~~~~~~~l~~~~l~~--~fd~~~--~~-~~~k~~~~~~~~~~~~~~~~~~l~v-g 132 (171)
..++++.+++.|+++++ ++-.+..+... ....+... ++-... .. .....+.++++.+. ..-.++.. |
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~--~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GG 166 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAK--LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGG 166 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHH--HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECC
Confidence 56789999999999986 34333313322 22233321 111100 01 11112334444332 11223333 3
Q ss_pred CCcccccccccCCceEEEeCCCC
Q psy4436 133 DEERNSHDVSPLGVTCIHVKDGM 155 (171)
Q Consensus 133 D~~~di~~a~~~G~~~i~v~~g~ 155 (171)
=+..++..+.++|...+.+....
T Consensus 167 I~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 167 ITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred cCHHHHHHHHhcCCCEEEEeehh
Confidence 34458989999999988885543
No 365
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=40.81 E-value=36 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
+.+|+..++++.|+++|+++++.-..
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 35899999999999999999877653
No 366
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=40.78 E-value=59 Score=22.94 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=28.8
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
.+.++++...+.|+++.|+|+++. ++..++.....
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~---ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTL---ARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHH---HHHHHHHhCCC
Confidence 477888888899999999999844 77788887766
No 367
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=40.71 E-value=40 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccc----cccccCCceEEEeCCC
Q psy4436 112 THFANLKKATGIEYKDMVFFDDEERNS----HDVSPLGVTCIHVKDG 154 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~vgD~~~di----~~a~~~G~~~i~v~~g 154 (171)
+....+++++|-..+-++||||+..|+ .++...|+..+.+..|
T Consensus 209 ~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 209 EEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 556788889999999999999999975 4555678888888654
No 368
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=40.37 E-value=19 Score=28.86 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHhhCCcEEEEEcC-----CchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 61 VPAILKYLKQNNCLVAAASR-----TTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~-----~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
-.++|++|+++|+.++-+|= ...|- +.-++.++--+.+.+.-|.. -..++++..-.-.+++.||-+.
T Consensus 187 t~~ll~~l~~kGv~~a~vTLHVG~GTF~PV------~~e~i~~H~mH~E~~~v~~~--ta~~i~~ak~~G~RIiAVGTT~ 258 (344)
T TIGR00113 187 SEELLEKLKAKGVQYAFITLHVGAGTFRPV------EADNIEDHVMHAEYYEVPQE--TVEALNKTRENGGRIIAVGTTS 258 (344)
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcCc------cccccccCCcccEEEEECHH--HHHHHHHHHHcCCeEEEEccce
Confidence 35799999999999988882 22211 11112222111222322222 2222232333456899999875
Q ss_pred c-ccccccc---------CCceEEEeCCCCcHHHHHHHHHH
Q psy4436 136 R-NSHDVSP---------LGVTCIHVKDGMSHSVLHKGLKQ 166 (171)
Q Consensus 136 ~-di~~a~~---------~G~~~i~v~~g~~~~~~~~~~~~ 166 (171)
- -++.+.. .|+..+.+..|+..+.....+.+
T Consensus 259 vRaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LlTN 299 (344)
T TIGR00113 259 VRSLESAAQEADGLIEPFFGDTSIFIYPGYQFKVVDGLITN 299 (344)
T ss_pred ehhehhhhccCCCccccCCcccCeEECCCCCCeEeceeeec
Confidence 5 3444322 46777777777765544444433
No 369
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=40.03 E-value=1.6e+02 Score=22.08 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHhhCCcEEEEEc--CCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc--cccc
Q psy4436 65 LKYLKQNNCLVAAAS--RTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER--NSHD 140 (171)
Q Consensus 65 l~~L~~~g~~i~i~S--~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~--di~~ 140 (171)
.+.....+++++... |. .+..++ .+...|.. |+.. + +.-++.+ .+.|++|++++|-|-... ++..
T Consensus 13 ~~~~~~~~~~i~yA~KaN~-~~~vl~-~l~~~g~g--~dv~---S---~~El~~a-~~~g~~~~~Ii~~gp~k~~~~l~~ 81 (251)
T PF02784_consen 13 WKAFLPYNVKIFYAVKANP-NPAVLK-ILAEEGCG--FDVA---S---PGELELA-LKAGFPPDRIIFTGPGKSDEELEE 81 (251)
T ss_dssp HHHHTTT-EEEEEEGGGS---HHHHH-HHHHTTCE--EEES---S---HHHHHHH-HHTTTTGGGEEEECSS--HHHHHH
T ss_pred HHhcCCCCcEEEEEECcCC-CHHHHH-HHHHcCCc--eEEe---c---ccchHHH-HhhhccccceeEecCcccHHHHHH
Confidence 333333346666555 33 324444 66666742 3322 1 2223333 448899999999998666 6888
Q ss_pred cccCCceEEEeCCC
Q psy4436 141 VSPLGVTCIHVKDG 154 (171)
Q Consensus 141 a~~~G~~~i~v~~g 154 (171)
|.+.|+..+.+..-
T Consensus 82 a~~~~~~~i~vDs~ 95 (251)
T PF02784_consen 82 AIENGVATINVDSL 95 (251)
T ss_dssp HHHHTESEEEESSH
T ss_pred HHhCCceEEEeCCH
Confidence 88878777777543
No 370
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=39.97 E-value=28 Score=23.92 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=35.8
Q ss_pred CCCCCCCcccccCCcEEEEeCCCCCCCceeccccCC-cceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEEEEc
Q psy4436 3 EIPHKLDPSVKKFPKLAVFDLDHTLWPFHVYIDVIP-PFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAAS 79 (171)
Q Consensus 3 ~~~~~~~~~~~~~~k~vvfDlDgTL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~i~S 79 (171)
++|.+++-.|.. .+++|| +-|.-|.+|. ...+. |=..+ +...+..+..+ +--...+++|++.|+++.++=
T Consensus 45 ~lpGkPDiVl~~-y~~viF-vHGCFWh~H~-c~~a~vPksnt-~fWleKi~kNv---eRD~r~~~~L~~~GwrvlvVW 115 (150)
T COG3727 45 DLPGKPDIVLPK-YRCVIF-VHGCFWHGHH-CYLAKVPKSNT-EFWLEKIGKNV---ERDERDIKRLQQLGWRVLVVW 115 (150)
T ss_pred CCCCCCCEeecC-ceEEEE-EeeeeccCCc-cccccCCCcch-HHHHHHHhhhh---hhhHHHHHHHHHcCCeEEEEE
Confidence 567777766665 677777 5688886554 21110 10000 11111111111 112357788888888887764
No 371
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.85 E-value=36 Score=26.76 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=22.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.||+..++++.|+++|+++++..+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 4589999999999999999988775
No 372
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=39.65 E-value=39 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.||+..++++.|+++|+++++..+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4589999999999999999988765
No 373
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=39.53 E-value=17 Score=29.05 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHhhCCcEEEEEcC-----CchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 61 VPAILKYLKQNNCLVAAASR-----TTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~-----~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
-.++|++|+++|++++-+|= ...|- +.-++..+--+.+.+.-|.. -...++...-.-.+++.||-+.
T Consensus 186 t~~ll~~L~~kGv~~a~vTLHVG~GTF~PV------~~edi~~H~mH~E~~~I~~~--ta~~i~~ak~~G~rIiAVGTT~ 257 (342)
T PRK00147 186 TEELLEKLKAKGVEIAFVTLHVGAGTFRPV------RVEDIEEHKMHSEWYEVPQE--TADAINAAKARGGRVIAVGTTS 257 (342)
T ss_pred CHHHHHHHHHCCCcEEEEEEeecCCCCcCc------ccCccccCCcccEEEEECHH--HHHHHHHHHHcCCeEEEEcccc
Confidence 35799999999999988882 22211 11112222111222222222 2222222233456788998876
Q ss_pred c-ccccccc--------CCceEEEeCCCCcHHHHHHHHHH
Q psy4436 136 R-NSHDVSP--------LGVTCIHVKDGMSHSVLHKGLKQ 166 (171)
Q Consensus 136 ~-di~~a~~--------~G~~~i~v~~g~~~~~~~~~~~~ 166 (171)
- -++.|.. .|+.-+.+..|+..+.....+.+
T Consensus 258 vRaLEsa~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LlTN 297 (342)
T PRK00147 258 VRTLESAARAGGELKPFSGWTDIFIYPGYRFKVVDALITN 297 (342)
T ss_pred hhhHHHHHccCCccccCCcccceEECCCCCCeEeceeeec
Confidence 5 4444421 36777777777765544444443
No 374
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=39.39 E-value=40 Score=26.82 Aligned_cols=43 Identities=5% Similarity=-0.098 Sum_probs=31.1
Q ss_pred eeeeCCCHHHHHHHHhhCCcEEEEEcCCch--hHHHHHHHHhcCcc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLVAAASRTTE--MLRAHQLVDLFNWN 97 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~--~~~~~~~l~~~~l~ 97 (171)
+..+.|+..++++.+++.|+.+.+.||+.. ++.+. .+...++.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~-~L~~~g~~ 107 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLD-ALADAGLD 107 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHH-HHHhCCCC
Confidence 344678999999999999999999999752 13333 45555554
No 375
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=39.18 E-value=18 Score=26.54 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=13.4
Q ss_pred ccccCCcEEEEeCCCCCC
Q psy4436 11 SVKKFPKLAVFDLDHTLW 28 (171)
Q Consensus 11 ~~~~~~k~vvfDlDgTL~ 28 (171)
+|+..-..|-||+|||+.
T Consensus 53 PmTGFE~~v~~D~~GT~m 70 (271)
T PF06901_consen 53 PMTGFEHTVTFDFQGTKM 70 (271)
T ss_pred CcccceeeEEEeccceEE
Confidence 344444689999999995
No 376
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.17 E-value=40 Score=26.86 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=21.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
.-+|+..++++.|+++|+++++..+
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3589999999999999999977544
No 377
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=39.11 E-value=2.1e+02 Score=23.36 Aligned_cols=82 Identities=7% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHhhC--CcEE--EEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc
Q psy4436 61 VPAILKYLKQN--NCLV--AAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 61 v~~~l~~L~~~--g~~i--~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~ 136 (171)
+++-.+.|++. ++++ ++=+|... ..++ .+...|.. ||.. + +.-++.+ .+.|+++++++|-|-...
T Consensus 23 i~~~~~~l~~~lp~~~~~YAvKaN~~~-~il~-~l~~~G~g--~Dva---S---~gEl~~a-l~~G~~~~~Iif~gp~K~ 91 (394)
T cd06831 23 IVKKHSQWQTVMAQIKPFYTVRCNSTP-AVLE-ILAALGTG--FACS---S---KNEMALV-QELGVSPENIIYTNPCKQ 91 (394)
T ss_pred HHHHHHHHHHHCCCCeEEeeeccCCCH-HHHH-HHHHcCCC--eEeC---C---HHHHHHH-HhcCCCcCCEEEeCCCCC
Confidence 34445555542 3443 55556543 5555 66666643 5443 1 1113333 347888999988887655
Q ss_pred --cccccccCCceEEEeCC
Q psy4436 137 --NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 137 --di~~a~~~G~~~i~v~~ 153 (171)
+++.|.+.|+..+.+..
T Consensus 92 ~~~l~~a~~~Gv~~i~vDS 110 (394)
T cd06831 92 ASQIKYAAKVGVNIMTCDN 110 (394)
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 78888888887766543
No 378
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=38.99 E-value=41 Score=26.30 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=27.1
Q ss_pred EeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEE
Q psy4436 21 FDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76 (171)
Q Consensus 21 fDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~ 76 (171)
=|++||+++.++... .+......+...++.+.+++.|....
T Consensus 260 nd~~gt~~~e~v~~~---------------ag~~~~~~~~~~~l~~~~~~~g~~~~ 300 (309)
T TIGR00423 260 NDLGGTLMEENISKA---------------AGAKSGVGLTVEELIEAIKDAGRVPA 300 (309)
T ss_pred ccCCcccccceeccc---------------cCCCCCCCCCHHHHHHHHHHcCCCee
Confidence 388899877555432 22233346778888888888887544
No 379
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=38.95 E-value=19 Score=30.02 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=13.0
Q ss_pred cccccCCcEEEEeCCCCCCCc
Q psy4436 10 PSVKKFPKLAVFDLDHTLWPF 30 (171)
Q Consensus 10 ~~~~~~~k~vvfDlDgTL~~~ 30 (171)
.+|.+ ++++-||+|-||...
T Consensus 7 l~l~~-i~~iGFDmDyTLa~Y 26 (448)
T PF05761_consen 7 LNLKD-IDVIGFDMDYTLARY 26 (448)
T ss_dssp EECCC---EEEE-TBTTTBEE
T ss_pred ccccc-CCEEEECcccchhhc
Confidence 34554 899999999999753
No 380
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.77 E-value=41 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=22.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
+.+|+..+++++|+++|+++++..+.
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 35899999999999999999886653
No 381
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.73 E-value=59 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=21.1
Q ss_pred CCCcEEEEcCCcc--cccccccCCceEEEeCC
Q psy4436 124 EYKDMVFFDDEER--NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 124 ~~~~~l~vgD~~~--di~~a~~~G~~~i~v~~ 153 (171)
.|+-+++++=..+ -+..|+++|+.++.+-+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 4665555554443 48888999999999854
No 382
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.50 E-value=37 Score=27.23 Aligned_cols=45 Identities=7% Similarity=0.010 Sum_probs=32.2
Q ss_pred CCeeeeCCCHHHHHHHHhhCCcEEEEEcCCch--hHHHHHHHHhcCcc
Q psy4436 52 GAIIKYYRDVPAILKYLKQNNCLVAAASRTTE--MLRAHQLVDLFNWN 97 (171)
Q Consensus 52 ~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~--~~~~~~~l~~~~l~ 97 (171)
+.+..+.|++.++++.+++.|+.+.+.||+.. ++.++ .+...++.
T Consensus 70 GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~-~L~~~g~~ 116 (378)
T PRK05301 70 GGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLA-ALKDAGLD 116 (378)
T ss_pred CCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHH-HHHHcCCC
Confidence 34455678999999999999999999999852 13333 45555544
No 383
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=38.03 E-value=65 Score=21.60 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=23.5
Q ss_pred CeeeeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 53 AIIKYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 53 ~~~~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
..+.+.+++...+...++.|++-+++-.
T Consensus 92 G~ir~v~~~~~~~~~A~~~G~~~vivP~ 119 (121)
T PF13541_consen 92 GEIRPVPGILPRIIEAKKLGFKRVIVPK 119 (121)
T ss_pred ccEEecCcHHHHHHHHHHCCCCEEEeCC
Confidence 4567899999999999999998877653
No 384
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.86 E-value=1.6e+02 Score=21.40 Aligned_cols=90 Identities=8% Similarity=-0.088 Sum_probs=50.1
Q ss_pred CHHHHHHHHhhCCcEEEEE-cCCchhHHHHHHHHhcCccccc-ceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCccc
Q psy4436 60 DVPAILKYLKQNNCLVAAA-SRTTEMLRAHQLVDLFNWNQHF-DHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERN 137 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~-S~~~~~~~~~~~l~~~~l~~~f-d~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~d 137 (171)
|..-+...|+.+|+.+..+ ++.+. +.....+...+..-.. +.......+....+...+++.+..++-.++||-..-+
T Consensus 100 G~~~v~~~l~~~G~~vi~LG~~vp~-e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~ 178 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDLGRDVPI-DTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT 178 (197)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCH-HHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC
Confidence 3445567788889998844 45554 3333355555533110 1111111122233444555566666667888888876
Q ss_pred ccccccCCceEEE
Q psy4436 138 SHDVSPLGVTCIH 150 (171)
Q Consensus 138 i~~a~~~G~~~i~ 150 (171)
-..+++.|...+.
T Consensus 179 ~~~~~~~gad~~~ 191 (197)
T TIGR02370 179 QDWADKIGADVYG 191 (197)
T ss_pred HHHHHHhCCcEEe
Confidence 6777888876554
No 385
>PRK14057 epimerase; Provisional
Probab=37.84 E-value=1.9e+02 Score=22.26 Aligned_cols=109 Identities=7% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCHHHHHHHHhhCCc---------EEEEEcCC--chhHHHHHHHHhcCcccccceeeEec--CCcHHHHHHHHH---Hh-
Q psy4436 59 RDVPAILKYLKQNNC---------LVAAASRT--TEMLRAHQLVDLFNWNQHFDHKEIFP--GQKTTHFANLKK---AT- 121 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~---------~i~i~S~~--~~~~~~~~~l~~~~l~~~fd~~~~~~--~~k~~~~~~~~~---~~- 121 (171)
+...+.|+.+|+.|. +.+++=|- +. +.....+.....--....--++. +--++.+.++.+ ..
T Consensus 110 ~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~-e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~ 188 (254)
T PRK14057 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL-DVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLG 188 (254)
T ss_pred cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH-HHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHH
Confidence 457889999999996 46666553 33 44555555444321111111111 212334444433 11
Q ss_pred CCCCCcEEEEcCCcc--cccccccCCceEEEeCCC-CcHHHHHHHHHHhh
Q psy4436 122 GIEYKDMVFFDDEER--NSHDVSPLGVTCIHVKDG-MSHSVLHKGLKQWA 168 (171)
Q Consensus 122 ~~~~~~~l~vgD~~~--di~~a~~~G~~~i~v~~g-~~~~~~~~~~~~~~ 168 (171)
+-.++-.+.||-+.+ .+....++|+..+....+ +......+.+++|.
T Consensus 189 ~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~ 238 (254)
T PRK14057 189 DKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWR 238 (254)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 112345678888887 677888899987776432 22223444454443
No 386
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=37.76 E-value=24 Score=28.39 Aligned_cols=97 Identities=16% Similarity=0.044 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCcEEEEEcC-----CchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 61 VPAILKYLKQNNCLVAAASR-----TTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~-----~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
-.++|++|+++|++++-+|= ...|- +.-++...--+.+.+.-|.. -..++++....-.+++.||-+.
T Consensus 208 T~~ll~~L~~kGv~~a~vTLHVG~GTF~PV------~~e~i~~H~MH~E~~~I~~e--ta~~In~ak~~G~RIiAVGTT~ 279 (366)
T PRK01424 208 TKDILDKLKAKGIQTAFLTLHVGAGTFLPV------KTENIHEHKMHTEYCSITPE--TAEIINKAKQEGRRIIAVGTTT 279 (366)
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcCc------cccccccCCccceEEEECHH--HHHHHHHHHHcCCeEEEEecce
Confidence 35799999999999998882 22211 11122222111222322222 2222222233457899999875
Q ss_pred c-ccccccc-------CCceEEEeCCCCcHHHHHHHHH
Q psy4436 136 R-NSHDVSP-------LGVTCIHVKDGMSHSVLHKGLK 165 (171)
Q Consensus 136 ~-di~~a~~-------~G~~~i~v~~g~~~~~~~~~~~ 165 (171)
- -++.+.+ .|+..+.+..|+..+.....+.
T Consensus 280 vRaLEsa~~~g~~~~~~g~TdiFI~PGy~f~vvD~LlT 317 (366)
T PRK01424 280 LRTLESSCNNGIVKAGSFETDIFITPGFKFQTADMLLT 317 (366)
T ss_pred eeeehhhhcCCccccCCcccceEECCCCCCeEeceeee
Confidence 5 4444332 3566677777766544443333
No 387
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=37.60 E-value=37 Score=27.84 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
.++.++=+.|++.|+++.+..+.+. +....+++.+++..
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~-~vl~~L~~~~~~~~ 99 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPE-DVLPELIKELGVRT 99 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHH-HHHHHHHHHhCCCE
Confidence 3455555667777888888777655 66666777666655
No 388
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=37.52 E-value=1.2e+02 Score=20.06 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcc-cccccccCCceEEEeCC-CCcHHHHHHHHHH
Q psy4436 112 THFANLKKATGIEYKDMVFFDDEER-NSHDVSPLGVTCIHVKD-GMSHSVLHKGLKQ 166 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~vgD~~~-di~~a~~~G~~~i~v~~-g~~~~~~~~~~~~ 166 (171)
..+...++..+++ ++++++... .-...+..+..++++.+ |.....+.+..+.
T Consensus 59 ~~i~~lc~~~~Ip---~~~~~sk~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~ 112 (117)
T TIGR03677 59 AHLPALCEEKGIP---YVYVKKKEDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEK 112 (117)
T ss_pred HHHHHHHHHcCCC---EEEeCCHHHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHH
Confidence 4567777778886 778886644 33333334566777754 6655555554443
No 389
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=37.44 E-value=44 Score=26.52 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.1
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.+|+...+++.|+++|+++++..+
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4589999999999999999988765
No 390
>KOG0832|consensus
Probab=36.98 E-value=23 Score=26.68 Aligned_cols=86 Identities=8% Similarity=0.035 Sum_probs=46.0
Q ss_pred HHHHHHHh-hCCcEEEEEcCCchhHHHHHHHHhcCcccccceee-----------------EecCCcHHHHHHHHHHhCC
Q psy4436 62 PAILKYLK-QNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE-----------------IFPGQKTTHFANLKKATGI 123 (171)
Q Consensus 62 ~~~l~~L~-~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~-----------------~~~~~k~~~~~~~~~~~~~ 123 (171)
..+...+. +.|+.+.+-||+...+.+....++.+-..++..-. ..++|+...|.. ..
T Consensus 98 ~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~-----t~ 172 (251)
T KOG0832|consen 98 LNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLP-----TL 172 (251)
T ss_pred HHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecc-----cC
Confidence 34433333 45788888888877666666666655443332110 001222222211 11
Q ss_pred CCCcEEEEcCCcc---cccccccCCceEEEeCC
Q psy4436 124 EYKDMVFFDDEER---NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 124 ~~~~~l~vgD~~~---di~~a~~~G~~~i~v~~ 153 (171)
.+ +++.|=|... -+..|.+.++.+|.+-+
T Consensus 173 ~~-D~vvvln~~e~~sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 173 TP-DLVVVLNPEENHSAILEAAKMAIPTIGIVD 204 (251)
T ss_pred Cc-ceeEecCcccccHHHHHHHHhCCCeEEEec
Confidence 22 5555555555 37778888999988843
No 391
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=36.92 E-value=38 Score=24.55 Aligned_cols=26 Identities=4% Similarity=0.024 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+...
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57789999999999999999998755
No 392
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=36.76 E-value=1.4e+02 Score=22.37 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHhhCCcEEEEE
Q psy4436 58 YRDVPAILKYLKQNNCLVAAA 78 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~ 78 (171)
.+...++.+.|++.|..+..+
T Consensus 12 ~~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 12 AEECAALAASLAEAGIFSSSL 32 (255)
T ss_pred HHHHHHHHHHHHHcCCCEEEc
Confidence 344455566666666555443
No 393
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=36.72 E-value=1.9e+02 Score=22.00 Aligned_cols=88 Identities=6% Similarity=-0.051 Sum_probs=52.0
Q ss_pred HHHHHHhhCCcEEEEEcCC------chhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCcc
Q psy4436 63 AILKYLKQNNCLVAAASRT------TEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~------~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~~ 136 (171)
..++..++...+..++|+. +++...+..+-..|++.---..+..+..--+....+.+.++. +.++.|-....
T Consensus 72 ~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~--~~~iIVTq~fH 149 (239)
T PRK10834 72 GAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDT--NDFIIITQRFH 149 (239)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCC--CCEEEECCHHH
Confidence 3455455555778999985 444666667777887743211122222222334444444543 56888888776
Q ss_pred ---cccccccCCceEEEeC
Q psy4436 137 ---NSHDVSPLGVTCIHVK 152 (171)
Q Consensus 137 ---di~~a~~~G~~~i~v~ 152 (171)
-+..|++.|+..+.+.
T Consensus 150 m~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 150 CERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHHHHcCCceEEEe
Confidence 4667888999877763
No 394
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.48 E-value=2.2e+02 Score=22.74 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec-CCcH-HH------HHHHHHHhCCCCCcEEEEc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP-GQKT-TH------FANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~-~~k~-~~------~~~~~~~~~~~~~~~l~vg 132 (171)
...++.+|++.|+.+.|.+... +.+..+++.+|+....-.....+ ..|. .. +.++++ +.+|+=++ -.
T Consensus 16 Fk~~I~eL~~~GheV~it~R~~--~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~--~~~pDv~i-s~ 90 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARDK--DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIK--KFKPDVAI-SF 90 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEecc--chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHH--hhCCCEEE-ec
Confidence 4578999999999999888763 45666999999772210111111 0111 11 111222 23454333 23
Q ss_pred CCcccccccccCCceEEEeCC
Q psy4436 133 DEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 133 D~~~di~~a~~~G~~~i~v~~ 153 (171)
.+..-...|.-+|+.++.+.+
T Consensus 91 ~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 91 GSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred CcHHHHHHHHHhCCCeEEEec
Confidence 334445577778888888865
No 395
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=36.37 E-value=2e+02 Score=22.16 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec----------------------CC
Q psy4436 52 GAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP----------------------GQ 109 (171)
Q Consensus 52 ~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~----------------------~~ 109 (171)
+..........++.+.+++.|-+|.+.+++.. ...+........++-.+ .| .|
T Consensus 108 gd~~~~V~d~~ea~~~~~~~~~rVflt~G~~~---l~~f~~~~~~~~~~~Rv--lp~~~~~~~~~~~~~p~~~Iia~~GP 182 (257)
T COG2099 108 GDNWIEVADIEEAAEAAKQLGRRVFLTTGRQN---LAHFVAADAHSHVLARV--LPPPDVLAKCEDLGVPPARIIAMRGP 182 (257)
T ss_pred CCceEEecCHHHHHHHHhccCCcEEEecCccc---hHHHhcCcccceEEEEE--cCchHHHHHHHhcCCChhhEEEecCC
Confidence 45666788899999999999888888888744 33344444443333111 11 12
Q ss_pred cHHHH-HHHHHHhCCCCCcEEEEcCC------cccccccccCCceEEEeCCC
Q psy4436 110 KTTHF-ANLKKATGIEYKDMVFFDDE------ERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 110 k~~~~-~~~~~~~~~~~~~~l~vgD~------~~di~~a~~~G~~~i~v~~g 154 (171)
-.... ..++++++++ ++.-=|| ..=+.+|+++|+.++.+...
T Consensus 183 fs~~~n~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 183 FSEEDNKALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred cChHHHHHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 12222 3333555542 3332222 22488999999999999543
No 396
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=36.21 E-value=41 Score=21.21 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=25.3
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCcHHHHHHHHHHhh
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWA 168 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~ 168 (171)
+.+|||. .-+...+-+|+..+.+. .+.++..+.++++.
T Consensus 1 IavIGd~-~~v~gFrLaGv~~~~~~--~~~ee~~~~l~~l~ 38 (95)
T PF01990_consen 1 IAVIGDR-DTVLGFRLAGVEGVYVN--TDPEEAEEALKELL 38 (95)
T ss_dssp EEEEE-H-HHHHHHHHTTSEEEEES--HSHHHHHHHHHHHH
T ss_pred CEEEeCH-HHHHHHHHcCCCCccCC--CCHHHHHHHHHHHh
Confidence 4678888 44667778999999887 34455555665554
No 397
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=36.13 E-value=81 Score=21.12 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIE 124 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~ 124 (171)
.|.+.++.+++++.|+.++.+|..+. +..+.+++..++. |.. ..++++ ...+.+.+++.
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~~-~~~~~~~~~~~~~--~~~---~~D~~~--~~~~~~~~g~~ 106 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDSP-FSLRAWAEENGLT--FPL---LSDFWP--HGEVAKAYGVF 106 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCH-HHHHHHHHhcCCC--ceE---ecCCCc--hhHHHHHhCCc
Confidence 45566777777888999988887655 5677788887754 322 223332 24455666764
No 398
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=36.09 E-value=44 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=27.8
Q ss_pred CCCeeeeCCCHHHHHHHHhhCCcEEEEEcCCchh
Q psy4436 51 GGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEM 84 (171)
Q Consensus 51 ~~~~~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~ 84 (171)
.++..-..+.+.++++.+++.|+.+++-||...+
T Consensus 91 GGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 91 GGEPTLQAEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred CCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 4445555778999999999999999999998553
No 399
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=35.92 E-value=1.7e+02 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=19.7
Q ss_pred CcEEEEcCCcccccccccCCceEEEeCCCCcHHHHHHHHHH
Q psy4436 126 KDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQ 166 (171)
Q Consensus 126 ~~~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~ 166 (171)
..++.||....+ .+++.|+....+....+.+.+.+.+.+
T Consensus 79 ~~~~avG~~Ta~--~l~~~g~~~~~~~~~~~~~~L~~~i~~ 117 (239)
T cd06578 79 LKIAAVGPKTAE--ALREAGLTADFVPEEGDSEGLLELLEL 117 (239)
T ss_pred CEEEEECHHHHH--HHHHcCCCceeCCCccCHHHHHHHHHh
Confidence 345556666553 334566655555444444444444433
No 400
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=35.48 E-value=53 Score=21.38 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.2
Q ss_pred cEEEEcCCcccccccccCCceEEEeCCC
Q psy4436 127 DMVFFDDEERNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 127 ~~l~vgD~~~di~~a~~~G~~~i~v~~g 154 (171)
.+.+||| ..-+-..+-+|+..+.+.+.
T Consensus 5 kIaVIGD-~dtv~GFrLaGi~~~~v~~~ 31 (104)
T PRK01395 5 KIGVVGD-KDSILPFKALGIDVFPVIDE 31 (104)
T ss_pred eEEEEEC-HHHHHHHHHcCCeeEEecCh
Confidence 5788999 66678888899988877555
No 401
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.45 E-value=30 Score=27.67 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=53.0
Q ss_pred HHHHHHhhCCcEEEEEcCCchhHHHH---HHHHhcCcccccceeeEecCCcH--HHHHHHHHHhCCCCCcEEEEcCCcc-
Q psy4436 63 AILKYLKQNNCLVAAASRTTEMLRAH---QLVDLFNWNQHFDHKEIFPGQKT--THFANLKKATGIEYKDMVFFDDEER- 136 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~~~~~---~~l~~~~l~~~fd~~~~~~~~k~--~~~~~~~~~~~~~~~~~l~vgD~~~- 136 (171)
.-+++|.+.|..++=+|=... +.+. .+-+++.++-.- +++=.++. ...+..+.++.++|-++-+-+ +..
T Consensus 40 ~QI~~L~~aG~dIVRvtv~~~-e~A~A~~~Ik~~~~vPLVa---DiHf~~rla~~~~~~g~~k~RINPGNig~~~-~v~~ 114 (361)
T COG0821 40 AQIKALERAGCDIVRVTVPDM-EAAEALKEIKQRLNVPLVA---DIHFDYRLALEAAECGVDKVRINPGNIGFKD-RVRE 114 (361)
T ss_pred HHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhCCCCEEE---EeeccHHHHHHhhhcCcceEEECCcccCcHH-HHHH
Confidence 567888999988887775544 2222 223334333110 11111221 222333456778888876443 444
Q ss_pred cccccccCCc-eEEEeCCCCcHHHH
Q psy4436 137 NSHDVSPLGV-TCIHVKDGMSHSVL 160 (171)
Q Consensus 137 di~~a~~~G~-~~i~v~~g~~~~~~ 160 (171)
-+++|++.|+ -.+.|++|.=.+++
T Consensus 115 vVe~Ak~~g~piRIGVN~GSLek~~ 139 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGSLEKRL 139 (361)
T ss_pred HHHHHHHcCCCEEEecccCchhHHH
Confidence 4788999997 58889888754444
No 402
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=35.27 E-value=32 Score=21.07 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=15.7
Q ss_pred CCCCCCCcccccCCcEEEEeCCCCCCCce
Q psy4436 3 EIPHKLDPSVKKFPKLAVFDLDHTLWPFH 31 (171)
Q Consensus 3 ~~~~~~~~~~~~~~k~vvfDlDgTL~~~~ 31 (171)
.+|..+|-..+. .+++|| +||.-|..+
T Consensus 44 ~lpG~PDiv~~~-~k~aIF-VdGCFWHgh 70 (75)
T PF03852_consen 44 DLPGKPDIVFPK-YKIAIF-VDGCFWHGH 70 (75)
T ss_dssp TSTT--SEEEGG-GTEEEE-EE-TTTTT-
T ss_pred cCCCCCCEEECC-CCEEEE-EecceeCCC
Confidence 466666655554 577777 789998754
No 403
>PRK13938 phosphoheptose isomerase; Provisional
Probab=35.21 E-value=39 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++..+++|.+++.+|+++.
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56788999999999999999998755
No 404
>PRK14976 5'-3' exonuclease; Provisional
Probab=35.17 E-value=96 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCc----EEEEcCCcccccccccCCceEE
Q psy4436 114 FANLKKATGIEYKD----MVFFDDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 114 ~~~~~~~~~~~~~~----~l~vgD~~~di~~a~~~G~~~i 149 (171)
...+.+++|+.|++ ...+||+-.++......|.++.
T Consensus 165 ~~~v~~~~gv~p~q~~d~~aL~GD~sDnipGVpGIG~KtA 204 (281)
T PRK14976 165 TNNFFELYGIEPKQIIDYKGLVGDSSDNIKGVKGIGPKTA 204 (281)
T ss_pred HHHHHHHhCcCHHHHHHHHHHhCCccCCCCCCCcccHHHH
Confidence 44566789999987 4579999999998888886543
No 405
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=35.05 E-value=2.3e+02 Score=22.48 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee-eEecCCcHHHHHHHHHHhC-CCCCcEEEEcCCc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK-EIFPGQKTTHFANLKKATG-IEYKDMVFFDDEE 135 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~-~~~~~~k~~~~~~~~~~~~-~~~~~~l~vgD~~ 135 (171)
-+.+.+..+-|.+- +-.+.+-...+ ..+..+.+..+++.+-..- ...|..-..-+.-+.+.++ ++...+.|+||.
T Consensus 86 ~Esi~DTArVLsr~-~D~I~~R~~~~-~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg- 162 (310)
T COG0078 86 GESIKDTARVLSRM-VDAIMIRGFSH-ETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG- 162 (310)
T ss_pred CCcHHHHHHHHHhh-hheEEEecccH-HHHHHHHHhCCCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc-
Confidence 34444554444444 33344444446 5556566666766322211 1233333355666667777 678899999999
Q ss_pred cc-----ccccccCCceEEEe-CCCCc-HHHHHHHHHHhh
Q psy4436 136 RN-----SHDVSPLGVTCIHV-KDGMS-HSVLHKGLKQWA 168 (171)
Q Consensus 136 ~d-----i~~a~~~G~~~i~v-~~g~~-~~~~~~~~~~~~ 168 (171)
+| +.++...|+....+ +.|+. .+++-...++.+
T Consensus 163 NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a 202 (310)
T COG0078 163 NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENA 202 (310)
T ss_pred chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 54 45677799976666 66775 344444444444
No 406
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=34.83 E-value=92 Score=21.60 Aligned_cols=43 Identities=7% Similarity=0.038 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD 101 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd 101 (171)
+.++.++=+.|++.|+.+.+..+.+. +....+++.+++...|.
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~V~~ 94 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPE-EVLPELAKEYGATAVYF 94 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHH-HHHHHHHHHHTESEEEE
T ss_pred HHHHHHHHHHHHhcCcceEEEecchH-HHHHHHHHhcCcCeeEe
Confidence 34456666788889999999999876 77777888888775543
No 407
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=34.76 E-value=84 Score=20.70 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
...+.+.|++.|..+.++|+... .. .++..|+.
T Consensus 15 ~lala~~L~~rGh~V~~~~~~~~---~~-~v~~~Gl~ 47 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPPDF---RE-RVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETGGG---HH-HHHHTT-E
T ss_pred HHHHHHHHhccCCeEEEeecccc---ee-cccccCce
Confidence 45788999999999999999754 33 55788877
No 408
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=34.63 E-value=1.3e+02 Score=21.99 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=48.6
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----eEe------cCCcHHHHHHHHHHhCCCCCcE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----EIF------PGQKTTHFANLKKATGIEYKDM 128 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----~~~------~~~k~~~~~~~~~~~~~~~~~~ 128 (171)
....++++++|+++ .+.+.-=++. +-.. ....+|.+ .+ .++ ..|+.+.++.+.+. ++ -
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~-ee~~-~A~~~G~D----~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~----p 146 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTL-EEAI-NAAELGFD----IIGTTLSGYTPYTKGDGPDFELVRELVQA-DV----P 146 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSH-HHHH-HHHHTT-S----EEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TS----E
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCH-HHHH-HHHHcCCC----EEEcccccCCCCCCCCCCCHHHHHHHHhC-CC----c
Confidence 67889999999997 4444433334 3333 45566643 22 111 23445666666553 33 2
Q ss_pred EEEcCCcc---cccccccCCceEEEeCCCCcHH
Q psy4436 129 VFFDDEER---NSHDVSPLGVTCIHVKDGMSHS 158 (171)
Q Consensus 129 l~vgD~~~---di~~a~~~G~~~i~v~~g~~~~ 158 (171)
+..+.+.+ ....+.++|..++.|....+..
T Consensus 147 vIaEGri~tpe~a~~al~~GA~aVVVGsAITrP 179 (192)
T PF04131_consen 147 VIAEGRIHTPEQAAKALELGAHAVVVGSAITRP 179 (192)
T ss_dssp EEEESS--SHHHHHHHHHTT-SEEEE-HHHH-H
T ss_pred EeecCCCCCHHHHHHHHhcCCeEEEECcccCCH
Confidence 66777776 5666777999999997766543
No 409
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=34.15 E-value=1.9e+02 Score=21.31 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=50.2
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc---cccceeeEecCCcHHHH---HHHHHHhCCCCCcE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN---QHFDHKEIFPGQKTTHF---ANLKKATGIEYKDM 128 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~---~~fd~~~~~~~~k~~~~---~~~~~~~~~~~~~~ 128 (171)
++......++++.|++.|+++.+-+=-+. .-+. .....|-. .|++.++....+-...+ ..+.++++++ -++
T Consensus 84 IP~T~~gl~ai~~L~~~gi~v~~T~V~s~-~Qa~-~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~-tki 160 (211)
T cd00956 84 IPVTEDGLKAIKKLSEEGIKTNVTAIFSA-AQAL-LAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD-TKI 160 (211)
T ss_pred EcCcHhHHHHHHHHHHcCCceeeEEecCH-HHHH-HHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCC-ceE
Confidence 34455678899999999998876664433 2222 22233422 11111111112222333 4444455543 344
Q ss_pred EEEcCCcc-cccccccCCceEEEeCC
Q psy4436 129 VFFDDEER-NSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 129 l~vgD~~~-di~~a~~~G~~~i~v~~ 153 (171)
+.-+=+.. ++..+..+|...+-++.
T Consensus 161 l~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 161 LAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred EecccCCHHHHHHHHHcCCCEEEeCH
Confidence 44333332 67777789999998873
No 410
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.07 E-value=2e+02 Score=21.65 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=51.4
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCch-hHHHHHHHHhcCcccccceeeE-ec-CCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTE-MLRAHQLVDLFNWNQHFDHKEI-FP-GQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~-~~~~~~~l~~~~l~~~fd~~~~-~~-~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
+...++++.+++.|++.+++-|... .+..+..++....--|. .+.. .. +-.+....++.+--...++..+.+|=+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 4677889999999999888777533 13444444443221122 1111 11 1111222222221122223347788877
Q ss_pred ---ccccccccCCceEEEeCCC
Q psy4436 136 ---RNSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 136 ---~di~~a~~~G~~~i~v~~g 154 (171)
.++..+.++|...+.+..+
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECHH
Confidence 3677777899988888653
No 411
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=34.04 E-value=1.7e+02 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL 93 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~ 93 (171)
.+...++++.|.++|++++++.+....+....+.+.
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~ 174 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAA 174 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh
Confidence 346778899999889999888765543444444443
No 412
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=33.98 E-value=52 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
.|.+.++++..++.|++++.|+-+
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehhh
Confidence 467889999999999999999875
No 413
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.94 E-value=1.2e+02 Score=23.84 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=30.1
Q ss_pred eeeeCCCHHHHHHHHhh-CCc-EEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 54 IIKYYRDVPAILKYLKQ-NNC-LVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~-~g~-~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+..+.+++.++++.+++ .|+ .+.+.||..........+...++.
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~ 114 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCC
Confidence 33457899999999988 588 899999985422223345555654
No 414
>PRK08185 hypothetical protein; Provisional
Probab=33.87 E-value=1.8e+02 Score=22.69 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=58.5
Q ss_pred HHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc---CcccccceeeE----ecCCcHHHHHHHHHHhCCCCCcEEEEcC-
Q psy4436 62 PAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF---NWNQHFDHKEI----FPGQKTTHFANLKKATGIEYKDMVFFDD- 133 (171)
Q Consensus 62 ~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~---~l~~~fd~~~~----~~~~k~~~~~~~~~~~~~~~~~~l~vgD- 133 (171)
.++|+..++.||-++-+.-.+. +.++..++.. +.+-....... .+.+-..+...++++..++ -++..|=
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~-e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP--V~lHLDHg 78 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADS-CFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP--FVIHLDHG 78 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCH-HHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC--EEEECCCC
Confidence 5778888999998877765555 6666666653 33322211111 1111224456666777664 3333332
Q ss_pred -CcccccccccCCceEEEeCC-CCcHHHHHHHHHH
Q psy4436 134 -EERNSHDVSPLGVTCIHVKD-GMSHSVLHKGLKQ 166 (171)
Q Consensus 134 -~~~di~~a~~~G~~~i~v~~-g~~~~~~~~~~~~ 166 (171)
+...+..|-+.|+.++.+.. ..+.++..+.-++
T Consensus 79 ~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~ 113 (283)
T PRK08185 79 ATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKE 113 (283)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 23478888889999999954 3455555444333
No 415
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=33.74 E-value=1.5e+02 Score=24.75 Aligned_cols=38 Identities=3% Similarity=-0.066 Sum_probs=26.4
Q ss_pred CCHHHHHHHHhhC--CcEEEEEcCCch-hHHHHHHHHhcCcc
Q psy4436 59 RDVPAILKYLKQN--NCLVAAASRTTE-MLRAHQLVDLFNWN 97 (171)
Q Consensus 59 ~~v~~~l~~L~~~--g~~i~i~S~~~~-~~~~~~~l~~~~l~ 97 (171)
..+.+.+..+++. |+.+++.||+.. ++... .+..++++
T Consensus 95 e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~-~L~~~gvd 135 (442)
T TIGR01290 95 GKTFQTLELVARQLPDVKLCLSTNGLMLPEHVD-RLVDLGVG 135 (442)
T ss_pred cccHHHHHHHHHhcCCCeEEEECCCCCCHHHHH-HHHHCCCC
Confidence 3477889999987 899999999853 24444 34444544
No 416
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.70 E-value=99 Score=20.56 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCcEEE---EEcCCchhHHHHHHHHhcC
Q psy4436 61 VPAILKYLKQNNCLVA---AASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~---i~S~~~~~~~~~~~l~~~~ 95 (171)
.+.+++.|+++|+..- +....+..+....+++..|
T Consensus 14 ~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 14 CRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 4455566666654442 1122222244444555555
No 417
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.64 E-value=43 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.+|++|.+++.+|+...
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46789999999999999999999755
No 418
>PRK13936 phosphoheptose isomerase; Provisional
Probab=33.46 E-value=45 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+...
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46788999999999999999998654
No 419
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=33.33 E-value=50 Score=24.19 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCcEEEEEcC
Q psy4436 61 VPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~ 80 (171)
-.+.++++.++|+++|++|-
T Consensus 138 ~~~~~~~~~~~~~~~c~VSp 157 (192)
T cd08584 138 DNDLILKLLKAGKKICLVSP 157 (192)
T ss_pred CHHHHHHHHHCCcEEEEECH
Confidence 35678899999999999994
No 420
>PLN02151 trehalose-phosphatase
Probab=33.04 E-value=1.1e+02 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHhCCCCC---cEEEEcCCccccccccc
Q psy4436 109 QKTTHFANLKKATGIEYK---DMVFFDDEERNSHDVSP 143 (171)
Q Consensus 109 ~k~~~~~~~~~~~~~~~~---~~l~vgD~~~di~~a~~ 143 (171)
.|....+.+++.++..-. -.+|+||...|-.+.+.
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~ 306 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKI 306 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHH
Confidence 577889999998876532 28999999998666554
No 421
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=32.94 E-value=1e+02 Score=18.83 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc
Q psy4436 63 AILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH 99 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~ 99 (171)
.+.+.|.++|+.+.|+.+-.. . ....|+..|+..+
T Consensus 44 ~~~~~l~~~~v~~li~~~iG~-~-~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGGIGE-G-AFRALKEAGIKVY 78 (94)
T ss_dssp HHHHHHHHTTESEEEESCSCH-H-HHHHHHHTTSEEE
T ss_pred hHHHHHHHcCCCEEEEeCCCH-H-HHHHHHHCCCEEE
Confidence 456667778888888888754 3 3447777787633
No 422
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=32.83 E-value=1e+02 Score=20.88 Aligned_cols=37 Identities=3% Similarity=-0.031 Sum_probs=17.4
Q ss_pred CCHHHHHHHHhhCCcEEEEEc---CCchhHHHHHHHHhcC
Q psy4436 59 RDVPAILKYLKQNNCLVAAAS---RTTEMLRAHQLVDLFN 95 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S---~~~~~~~~~~~l~~~~ 95 (171)
+....+++.|.++|+..-..- .....+....+++..+
T Consensus 11 ~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 11 TSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhC
Confidence 444556666666665443331 2222244444555544
No 423
>PRK05755 DNA polymerase I; Provisional
Probab=32.71 E-value=20 Score=32.45 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=46.7
Q ss_pred CHHHHHHHHh----hCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCc----EEEE
Q psy4436 60 DVPAILKYLK----QNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKD----MVFF 131 (171)
Q Consensus 60 ~v~~~l~~L~----~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~----~l~v 131 (171)
++.+++..|- ..|..++|+|+-. +... ++.. ++..+ +.... .+...-....+.+++|++|++ ...+
T Consensus 109 EADD~ia~la~~~~~~~~~~~i~S~Dk--D~~q-l~~~-~v~~~-~~~~~-~~~~~~~~~~v~~~~g~~p~q~~d~~~L~ 182 (880)
T PRK05755 109 EADDVIGTLAKQAEAAGYEVLIVTGDK--DLLQ-LVDD-NVTLL-DTMGV-SKNEELDPEEVVEKYGVTPEQIIDYLALM 182 (880)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEcCCC--Chhh-hCCC-CEEEe-eccCC-CCCeEEcHHHHHHHHCcCHHHHHHHHHHh
Confidence 4556655553 5678888888742 3322 2211 11111 11000 011111134556778999887 5679
Q ss_pred cCCcccccccccCCceEE
Q psy4436 132 DDEERNSHDVSPLGVTCI 149 (171)
Q Consensus 132 gD~~~di~~a~~~G~~~i 149 (171)
||+-.++......|.++.
T Consensus 183 GD~sDnipGv~GiG~ktA 200 (880)
T PRK05755 183 GDSSDNIPGVPGIGEKTA 200 (880)
T ss_pred CCccCCCCCCCCccHHHH
Confidence 999999998888886543
No 424
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=32.51 E-value=44 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCcEEEEcCC
Q psy4436 114 FANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~ 134 (171)
+...++..|+-|.+++||-|+
T Consensus 61 ~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 61 YDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred cCCCHHHcCCCCCcEEEEecC
Confidence 345788899999999999987
No 425
>PRK10949 protease 4; Provisional
Probab=32.51 E-value=96 Score=27.08 Aligned_cols=70 Identities=7% Similarity=0.045 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEec---------CCcHHHHHHHHHHhCCCCCcEE
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP---------GQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~---------~~k~~~~~~~~~~~~~~~~~~l 129 (171)
.++.+.|+++|+.|.+|+....... ...+ ++ ....|.+..-| ......|+.+++++|+++ +++
T Consensus 132 ~eI~~ai~~fk~sGKpVvA~~~~~~-s~~Y-yL-----ASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~-~v~ 203 (618)
T PRK10949 132 QYIGKALREFRDSGKPVYAVGDSYS-QGQY-YL-----ASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVST-HVF 203 (618)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCcc-chhh-hh-----hhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeE-EEE
Confidence 4577889999999999877655432 2222 22 22223321111 223456899999999974 455
Q ss_pred EEcCCcc
Q psy4436 130 FFDDEER 136 (171)
Q Consensus 130 ~vgD~~~ 136 (171)
-+|.-..
T Consensus 204 r~G~yKs 210 (618)
T PRK10949 204 RVGTYKS 210 (618)
T ss_pred EecCCCC
Confidence 5565443
No 426
>PRK08444 hypothetical protein; Provisional
Probab=32.50 E-value=49 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=25.2
Q ss_pred eCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEE
Q psy4436 22 DLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76 (171)
Q Consensus 22 DlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~ 76 (171)
|++||+....+.. ..+......+...++.+.+++.|+.-.
T Consensus 302 D~ggt~~~e~i~~---------------~ag~~~~~~~~~~~l~~~i~~~g~~p~ 341 (353)
T PRK08444 302 DLDGTIEKESIQS---------------AAGAKSANGLSLEDFIFLIKDSGFIPV 341 (353)
T ss_pred cCccccccccchh---------------hccCCCCCCCCHHHHHHHHHHcCCCee
Confidence 8888887654442 223233335667888888888887544
No 427
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=32.23 E-value=1.7e+02 Score=21.58 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=34.9
Q ss_pred cccCCcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-----CcEEEEEcCCch
Q psy4436 12 VKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-----NCLVAAASRTTE 83 (171)
Q Consensus 12 ~~~~~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-----g~~i~i~S~~~~ 83 (171)
|++.|-.+++|+-|.++...+ -.+..|+..++..|++. -..+.|+|-.+.
T Consensus 1 mrRlP~~lllDtSgSM~Ge~I----------------------ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~ 55 (207)
T COG4245 1 MRRLPCYLLLDTSGSMIGEPI----------------------EALNAGLQMMIDTLKQDPYALERVELSIVTFGGP 55 (207)
T ss_pred CCCCCEEEEEecCcccccccH----------------------HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCc
Confidence 456788889999998854211 13466788888888864 467899996544
No 428
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=32.14 E-value=58 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.6
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.+|+..++++.|+++|+++++..+
T Consensus 61 ~~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 61 YRFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEee
Confidence 3589999999999999999987654
No 429
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=31.93 E-value=2.1e+02 Score=21.15 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHh-cCccccccee---eEecCCcHHHHHHHHHHhCCCC--CcEEEEcCC
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDL-FNWNQHFDHK---EIFPGQKTTHFANLKKATGIEY--KDMVFFDDE 134 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~-~~l~~~fd~~---~~~~~~k~~~~~~~~~~~~~~~--~~~l~vgD~ 134 (171)
...+++.|+++ |++++++|-.....-...+.+ .+.. .-.+ ..+ .-...+...+++++.... -+++||...
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~--i~~v~TG~~C-H~da~m~~~ai~~l~~~~~~~Dll~iEs~ 105 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEP--IIGVETGKGC-HLDASMNLEAIEELVLDFPDLDLLFIESV 105 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCe--eEEeccCCcc-CCcHHHHHHHHHHHhhcCCcCCEEEEecC
Confidence 34678888888 999999997654345556666 4443 1112 122 234566777777776543 389999887
Q ss_pred c
Q psy4436 135 E 135 (171)
Q Consensus 135 ~ 135 (171)
=
T Consensus 106 G 106 (202)
T COG0378 106 G 106 (202)
T ss_pred c
Confidence 7
No 430
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=31.64 E-value=1e+02 Score=20.13 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=19.0
Q ss_pred CCHHHHHHHHhhCCcEEEEE---cCCchhHHHHHHHHhcC
Q psy4436 59 RDVPAILKYLKQNNCLVAAA---SRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~---S~~~~~~~~~~~l~~~~ 95 (171)
...+++++.|+++|+.+... ...........+++..+
T Consensus 10 ~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 10 SKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred HHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 34556666666666554433 22222244445666665
No 431
>PRK02947 hypothetical protein; Provisional
Probab=31.59 E-value=48 Score=25.04 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTT 82 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~ 82 (171)
.+.+.++++.++++|.+++.+|+..
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 4678999999999999999999975
No 432
>KOG1050|consensus
Probab=31.57 E-value=89 Score=27.90 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=31.0
Q ss_pred CcEEEEeCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHH
Q psy4436 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAH 88 (171)
Q Consensus 16 ~k~vvfDlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~ 88 (171)
.++++||.|+|++..... . +...|+.|... +-.+.|+|+..+ ....
T Consensus 503 ~rli~ldyd~t~~~~~~~------------------------~--~~~~l~~L~~dp~n~v~i~s~~~r-~~l~ 549 (732)
T KOG1050|consen 503 KRLILLDYDLTLIPPRSI------------------------K--AISILKDLCSDPKNIVYIVSGRGR-SVLE 549 (732)
T ss_pred ceEEEecccccccCCCCc------------------------h--HHHHHHHHhcCCCCeEEEEEccCc-hhhh
Confidence 479999999999763321 0 66677777765 356778887766 4443
No 433
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=31.45 E-value=2.5e+02 Score=21.88 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcc
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~ 136 (171)
...-.+...+++.-.--.++++||...
T Consensus 96 ~V~k~~~~v~~~~~~Gy~iviiG~~~H 122 (281)
T PF02401_consen 96 FVKKIHKIVRKYAKEGYQIVIIGDKNH 122 (281)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEES-TT-
T ss_pred hHHHHHHHHHHHHhcCCEEEEECCCCC
Confidence 333344444444333345566666444
No 434
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=1e+02 Score=20.74 Aligned_cols=37 Identities=16% Similarity=0.001 Sum_probs=29.1
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
.-..+.+.|+++|+.+.|+++-.. .+...++..|+.-
T Consensus 53 ~G~~~a~~l~~~gvdvvi~~~iG~--~a~~~l~~~GIkv 89 (121)
T COG1433 53 AGIRIAELLVDEGVDVVIASNIGP--NAYNALKAAGIKV 89 (121)
T ss_pred chHHHHHHHHHcCCCEEEECccCH--HHHHHHHHcCcEE
Confidence 345678999999999999999755 3555888988773
No 435
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.01 E-value=1.9e+02 Score=20.40 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=56.0
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCC------------CCCc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGI------------EYKD 127 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~------------~~~~ 127 (171)
+..+.+.++++.|..|.=+|--+. ...+.+.++.++. |... +++..+ +++.+|+ -+.+
T Consensus 52 ~Frd~~~ef~~~~a~V~GIS~Ds~-~~~~~F~~k~~L~--f~LL---SD~~~~----v~~~ygv~~~k~~~gk~~~~~~R 121 (157)
T COG1225 52 DFRDLLEEFEKLGAVVLGISPDSP-KSHKKFAEKHGLT--FPLL---SDEDGE----VAEAYGVWGEKKMYGKEYMGIER 121 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCH-HHHHHHHHHhCCC--ceee---ECCcHH----HHHHhCcccccccCccccccccc
Confidence 466778889999999888887766 7788899999998 5443 333332 4455554 2455
Q ss_pred EEEEcCCcccccccccCCceEEEeCCCCcHHHHHHHHHHhh
Q psy4436 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWA 168 (171)
Q Consensus 128 ~l~vgD~~~di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~ 168 (171)
..||=|...-+.-++ ..++...+.++..+.++++.
T Consensus 122 ~TfvId~dG~I~~~~------~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 122 STFVIDPDGKIRYVW------RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred eEEEECCCCeEEEEe------cCCCCcccHHHHHHHHHHhc
Confidence 666655544443333 11122334555666666553
No 436
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=30.84 E-value=35 Score=25.67 Aligned_cols=10 Identities=60% Similarity=0.843 Sum_probs=8.9
Q ss_pred CCcEEEEeCC
Q psy4436 15 FPKLAVFDLD 24 (171)
Q Consensus 15 ~~k~vvfDlD 24 (171)
.|+.+|||||
T Consensus 97 ~PD~lvfDLD 106 (227)
T cd04861 97 RPDRLVFDLD 106 (227)
T ss_pred CCCEEEEECC
Confidence 5889999998
No 437
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=30.78 E-value=2.3e+02 Score=21.11 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=49.9
Q ss_pred CcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCC---cccccccccCCceE
Q psy4436 72 NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDE---ERNSHDVSPLGVTC 148 (171)
Q Consensus 72 g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~---~~di~~a~~~G~~~ 148 (171)
|..+++++.+.---+-........+. -..+...|.+.. ++.++.++|++-+++-++-=. ...+.....-|-..
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~~--~~~v~iIPgiSS--~q~a~ARlg~~~~~~~~islHgr~~~~l~~~~~~~~~~ 143 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKFS--CEEVEIIPGISS--VQLAAARLGWPLQDTEVISLHGRPVELLRPLLENGRRL 143 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhcC--ccceEEecChhH--HHHHHHHhCCChHHeEEEEecCCCHHHHHHHHhCCceE
Confidence 77777776553211111112222211 133456666555 999999999999987765443 33455555455555
Q ss_pred EEe-CCCCcHHHHHHHHHH
Q psy4436 149 IHV-KDGMSHSVLHKGLKQ 166 (171)
Q Consensus 149 i~v-~~g~~~~~~~~~~~~ 166 (171)
+.. ++.+...++-+.|.+
T Consensus 144 vil~~~~~~P~~IA~~L~~ 162 (210)
T COG2241 144 VILTPDDFGPAEIAKLLTE 162 (210)
T ss_pred EEeCCCCCCHHHHHHHHHh
Confidence 555 345556666555543
No 438
>KOG0208|consensus
Probab=30.71 E-value=1.5e+02 Score=27.64 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=48.6
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc-------ccceeeEec---CCcHHHHHHHHHHhCCCCCcEE
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ-------HFDHKEIFP---GQKTTHFANLKKATGIEYKDMV 129 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~-------~fd~~~~~~---~~k~~~~~~~~~~~~~~~~~~l 129 (171)
+..+.++.+..+|++++.+-.+..+.. .+.+..++.. -|-+...+. |+.....-.-+++- +-+.++
T Consensus 651 dy~evl~~Yt~~GfRVIAlA~K~L~~~--~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~A--nIRtVM 726 (1140)
T KOG0208|consen 651 DYQEVLKEYTHQGFRVIALASKELETS--TLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRA--NIRTVM 726 (1140)
T ss_pred cHHHHHHHHHhCCeEEEEEecCccCcc--hHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhh--cceEEE
Confidence 577788899999999987776655333 2222222221 122222222 33332222223333 456788
Q ss_pred EEcCCcc-cccccccCCc
Q psy4436 130 FFDDEER-NSHDVSPLGV 146 (171)
Q Consensus 130 ~vgD~~~-di~~a~~~G~ 146 (171)
.-||+.- -+..|+++|+
T Consensus 727 cTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 727 CTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EcCCchheeeehhhcccc
Confidence 8899998 8999999997
No 439
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.50 E-value=55 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=22.1
Q ss_pred eeCCCH--HHHHHHHhhCCcEEEEEcCC
Q psy4436 56 KYYRDV--PAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 56 ~~~~~v--~~~l~~L~~~g~~i~i~S~~ 81 (171)
+.+|+. .+.++.|+++|+++++..+.
T Consensus 61 ~~FPdp~~~~mi~~L~~~G~k~~~~i~P 88 (339)
T cd06602 61 VRFPGLKMPEFVDELHANGQHYVPILDP 88 (339)
T ss_pred ccCCCccHHHHHHHHHHCCCEEEEEEeC
Confidence 347888 99999999999999887753
No 440
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=30.41 E-value=37 Score=25.60 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=9.7
Q ss_pred cCCcEEEEeCCC
Q psy4436 14 KFPKLAVFDLDH 25 (171)
Q Consensus 14 ~~~k~vvfDlDg 25 (171)
..|+-+|||||=
T Consensus 100 e~PD~~vfDLDP 111 (231)
T cd04863 100 GPPDRLVFDLDP 111 (231)
T ss_pred CCCCEEEEECCC
Confidence 358899999984
No 441
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=30.15 E-value=2.3e+02 Score=21.54 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=18.4
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCch--hHHHHHHHHhcCcc
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTE--MLRAHQLVDLFNWN 97 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~--~~~~~~~l~~~~l~ 97 (171)
-+-.++.+..++.|..+++.|+... .+.....++++++.
T Consensus 50 TDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~ 90 (247)
T COG1212 50 TDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLP 90 (247)
T ss_pred cCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCC
Confidence 3344555555666665555553211 13333345555544
No 442
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.12 E-value=2.1e+02 Score=22.52 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcC
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~ 95 (171)
+...++++.|.++|++|.++.+....+.+..+.+.+.
T Consensus 195 e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~ 231 (334)
T COG0859 195 EHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLP 231 (334)
T ss_pred HHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcC
Confidence 3678899999999988888777644455555555554
No 443
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=30.12 E-value=1.4e+02 Score=22.29 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=52.2
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce----eeEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH----KEIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~----~~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
+..+.-.++++.|+++|+++.+-.=-+..+.. .....|- .|... ++....+-...++.+.+.+...--++-.+
T Consensus 87 P~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~--~Aa~aGa-~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkIL 163 (220)
T PRK12653 87 PVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGL--LSALAGA-EYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVL 163 (220)
T ss_pred CCCHHHHHHHHHHHHcCCCeeEEEecCHHHHH--HHHhcCC-cEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEE
Confidence 33444578899999999987533221121221 1222342 22211 11112222233444444332212233444
Q ss_pred cCCcc---cccccccCCceEEEeCC---------CCcHHHHHHHHHHhhh
Q psy4436 132 DDEER---NSHDVSPLGVTCIHVKD---------GMSHSVLHKGLKQWAS 169 (171)
Q Consensus 132 gD~~~---di~~a~~~G~~~i~v~~---------g~~~~~~~~~~~~~~~ 169 (171)
.-|.+ ++..+-.+|+..+-++. ..+.+.++...++|.+
T Consensus 164 aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~ 213 (220)
T PRK12653 164 AASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQG 213 (220)
T ss_pred EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 45544 44444468988887754 3344555555566653
No 444
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=30.04 E-value=20 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.1
Q ss_pred CCcEEEEeCCCCCC
Q psy4436 15 FPKLAVFDLDHTLW 28 (171)
Q Consensus 15 ~~k~vvfDlDgTL~ 28 (171)
.|..++||+.+||-
T Consensus 31 ~P~iV~fdmk~tld 44 (112)
T TIGR02744 31 SPVTVAFDMKQTLD 44 (112)
T ss_pred CCeEEEEecHHHHH
Confidence 57789999999994
No 445
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=29.90 E-value=40 Score=22.27 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=13.5
Q ss_pred cccCCcEEEEeCCCCCC
Q psy4436 12 VKKFPKLAVFDLDHTLW 28 (171)
Q Consensus 12 ~~~~~k~vvfDlDgTL~ 28 (171)
.+.+|++|+||+=|.+-
T Consensus 54 ~TYtPRlL~~Dlkg~lG 70 (115)
T PF10644_consen 54 VTYTPRLLLFDLKGGLG 70 (115)
T ss_pred eeECCcEEEEecCCCcC
Confidence 34679999999987774
No 446
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=29.82 E-value=71 Score=26.72 Aligned_cols=40 Identities=8% Similarity=-0.029 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ 98 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~ 98 (171)
..++.++=+.|++.|+++.+..+.+. +....+++..++..
T Consensus 54 ~esL~~L~~~L~~~G~~L~v~~G~p~-~vl~~l~~~~~~~~ 93 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQLLILQGDPV-QLIPQLAQQLGAKA 93 (471)
T ss_pred HHHHHHHHHHHHHCCCCeEEEECCHH-HHHHHHHHHcCCCE
Confidence 34455556677777888888887766 66666777666665
No 447
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=29.68 E-value=1.2e+02 Score=22.70 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccccccee----eEecCCcHHHHHHHHHHhCCCCCcEEEE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK----EIFPGQKTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~----~~~~~~k~~~~~~~~~~~~~~~~~~l~v 131 (171)
+....-.++++.|+++|+++.+--=-+..+.. .....|-. |.... +.....-...++.+.+.+...--++-.+
T Consensus 87 P~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~--~Aa~aGa~-yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkIL 163 (220)
T PRK12655 87 PVTAEGLAAIKKLKKEGIPTLGTAVYSAAQGL--LAALAGAK-YVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVL 163 (220)
T ss_pred CCCHHHHHHHHHHHHCCCceeEeEecCHHHHH--HHHHcCCe-EEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 33444578899999999988633321121221 22223322 22111 1111222233444444333221233444
Q ss_pred cCCcc---cccccccCCceEEEeCC---------CCcHHHHHHHHHHhhh
Q psy4436 132 DDEER---NSHDVSPLGVTCIHVKD---------GMSHSVLHKGLKQWAS 169 (171)
Q Consensus 132 gD~~~---di~~a~~~G~~~i~v~~---------g~~~~~~~~~~~~~~~ 169 (171)
.-|.+ ++..+-.+|...+-++. ..+.+.++...++|.+
T Consensus 164 aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~ 213 (220)
T PRK12655 164 AASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQA 213 (220)
T ss_pred EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45544 44444468988887764 3345555556666653
No 448
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=29.58 E-value=1.5e+02 Score=18.70 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=41.3
Q ss_pred HHHHHHhhCCcEEEEEc-------CCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCCCcEEEEcCCc
Q psy4436 63 AILKYLKQNNCLVAAAS-------RTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S-------~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
+.++.+-+. -+|.+.| .++.-..++.+|+..++. |..++... .++....+.+..|.+.=-.+|||+..
T Consensus 3 ~~v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~--~~~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 3 ERIKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLE--DPEIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred HHHHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCC--CHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 345555555 3455553 355546688899999986 54444432 24455555566676655678998865
No 449
>PLN02591 tryptophan synthase
Probab=29.54 E-value=2.6e+02 Score=21.35 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHhhCCcEEEEEc-CCchhHHHHHHHHhcCccccccee---eEec--C-CcHHHHHHHHHHhCCCCCcEEE
Q psy4436 58 YRDVPAILKYLKQNNCLVAAAS-RTTEMLRAHQLVDLFNWNQHFDHK---EIFP--G-QKTTHFANLKKATGIEYKDMVF 130 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S-~~~~~~~~~~~l~~~~l~~~fd~~---~~~~--~-~k~~~~~~~~~~~~~~~~~~l~ 130 (171)
+++..++.+.+++.|+..+.+- -+..++..+...+.. .-|-+. .+.. + ..+..+...+++..--.+--++
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---EGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 3557778888888886654443 443323344333332 122222 1111 1 1123344433333322455677
Q ss_pred EcCCcc---cccccccCCceEEEeCCC
Q psy4436 131 FDDEER---NSHDVSPLGVTCIHVKDG 154 (171)
Q Consensus 131 vgD~~~---di~~a~~~G~~~i~v~~g 154 (171)
+|=+.. ++..+.+.|...+.|...
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 777766 788888888888888653
No 450
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.39 E-value=24 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccccccc
Q psy4436 114 FANLKKATGIEYKDMVFFDDEERNSHDVS 142 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~~di~~a~ 142 (171)
.+.+++++|+ ++|+||+..|+...+
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQ 31 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHH
Confidence 3455565554 667777766665543
No 451
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=29.37 E-value=2.5e+02 Score=21.13 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=60.1
Q ss_pred HHHHHHHHhh--CCcEEEEEcCCchhHHHHHHHHhcCccccccee--e-EecCCcHHHHHHHHHHhCCCCCcEEEEcC-C
Q psy4436 61 VPAILKYLKQ--NNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHK--E-IFPGQKTTHFANLKKATGIEYKDMVFFDD-E 134 (171)
Q Consensus 61 v~~~l~~L~~--~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~--~-~~~~~k~~~~~~~~~~~~~~~~~~l~vgD-~ 134 (171)
|.++-+..-+ .|+.++-.+.+ . +.++..++.+.- |.+ + ..|+-+.--+..-++.-+.+ -++++|-- +
T Consensus 12 Vaeih~~yv~~~~gF~~vg~A~~-~-~ea~~~i~~~~p----DLILLDiYmPd~~Gi~lL~~ir~~~~~-~DVI~iTAA~ 84 (224)
T COG4565 12 VAEIHRRYVKQIPGFSVVGTAGT-L-EEAKMIIEEFKP----DLILLDIYMPDGNGIELLPELRSQHYP-VDVIVITAAS 84 (224)
T ss_pred HHHHHHHHHHhCCCceEEEeecc-H-HHHHHHHHhhCC----CEEEEeeccCCCccHHHHHHHHhcCCC-CCEEEEeccc
Confidence 4444444433 38877766665 3 445667776554 222 2 24555653344444444444 45555543 2
Q ss_pred cc-cccccccCCceEEEeCCCCcHHHHHHHHHHhhhc
Q psy4436 135 ER-NSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASK 170 (171)
Q Consensus 135 ~~-di~~a~~~G~~~i~v~~g~~~~~~~~~~~~~~~~ 170 (171)
.. -+..|-+.|+--++++. +..+.+++.|.+|..+
T Consensus 85 d~~tI~~alr~Gv~DYLiKP-f~~eRl~~aL~~y~~~ 120 (224)
T COG4565 85 DMETIKEALRYGVVDYLIKP-FTFERLQQALTRYRQK 120 (224)
T ss_pred hHHHHHHHHhcCchhheecc-eeHHHHHHHHHHHHHH
Confidence 22 47788889998888854 5578888899988765
No 452
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.30 E-value=48 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|++..
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~ 213 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTP 213 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 45678899999999999999999765
No 453
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=29.25 E-value=48 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.1
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCC
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRT 81 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~ 81 (171)
..+.++-+.|+++|+.+.+++-.
T Consensus 89 ~a~~~l~~~L~~~G~~v~~~~w~ 111 (130)
T PF12965_consen 89 RAIKRLGKLLKEAGCKVKIITWP 111 (130)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC
Confidence 44566778888999999999865
No 454
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=29.21 E-value=57 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|++..
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45688999999999999999998765
No 455
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=29.12 E-value=85 Score=24.91 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHhhCCcEE
Q psy4436 58 YRDVPAILKYLKQNNCLV 75 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i 75 (171)
..++.++++.|+++|+-+
T Consensus 60 i~D~~~l~~~l~e~gIY~ 77 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYP 77 (316)
T ss_pred ccCHHHHHHHHHHCCCEE
Confidence 488999999999999643
No 456
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.09 E-value=1.2e+02 Score=20.59 Aligned_cols=60 Identities=5% Similarity=-0.078 Sum_probs=35.5
Q ss_pred HHHHHHhhCCcEEEEEcCC-------chhHHHHHHHHhcCcccccceeeE--ecCCcHHHHHHHHHHhC
Q psy4436 63 AILKYLKQNNCLVAAASRT-------TEMLRAHQLVDLFNWNQHFDHKEI--FPGQKTTHFANLKKATG 122 (171)
Q Consensus 63 ~~l~~L~~~g~~i~i~S~~-------~~~~~~~~~l~~~~l~~~fd~~~~--~~~~k~~~~~~~~~~~~ 122 (171)
+=+..++++|++.+|+-.- +.....+...++.|+...|-.+.. ......+.|..++...+
T Consensus 19 ~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eae 87 (130)
T COG3453 19 ADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAE 87 (130)
T ss_pred HHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhC
Confidence 3356788899998887642 222566778888898844433311 12334466666665543
No 457
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=74 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.4
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchh
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEM 84 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~ 84 (171)
..++...+++.|++.|+++.+=||.+.+
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 3568999999999999999999988664
No 458
>KOG3111|consensus
Probab=29.05 E-value=2.4e+02 Score=20.91 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=58.0
Q ss_pred eeeCCCHHHHHHHHhhCCcEEEEEcCCchh-HHHHHHHHhcCcccccceeeEecCCc--HHHHHHHHHHhCCC-CCcEEE
Q psy4436 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEM-LRAHQLVDLFNWNQHFDHKEIFPGQK--TTHFANLKKATGIE-YKDMVF 130 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~g~~i~i~S~~~~~-~~~~~~l~~~~l~~~fd~~~~~~~~k--~~~~~~~~~~~~~~-~~~~l~ 130 (171)
.+...+..++++++++.|.+++++=+-..+ +.+..+++.+++--....--++...| .+++.++-. +.-+ |.=.+=
T Consensus 95 ~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~-lR~kyp~l~ie 173 (224)
T KOG3111|consen 95 YEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEW-LREKYPNLDIE 173 (224)
T ss_pred EeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHH-HHHhCCCceEE
Confidence 344566789999999999999998875331 33333443333221111111122222 233333221 1111 233333
Q ss_pred EcCCcc--cccccccCCceEEEeCCC----CcHHHHHHHHHH
Q psy4436 131 FDDEER--NSHDVSPLGVTCIHVKDG----MSHSVLHKGLKQ 166 (171)
Q Consensus 131 vgD~~~--di~~a~~~G~~~i~v~~g----~~~~~~~~~~~~ 166 (171)
||-+.. ++..+.++|.+.+....+ -..++..+.+++
T Consensus 174 vDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 174 VDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRN 215 (224)
T ss_pred ecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHH
Confidence 555444 788888899988877542 234555555554
No 459
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=28.63 E-value=46 Score=25.51 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEe---cCC-cHHHHHHHHHHhCCCCCcEEEEcC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF---PGQ-KTTHFANLKKATGIEYKDMVFFDD 133 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~---~~~-k~~~~~~~~~~~~~~~~~~l~vgD 133 (171)
...+.+.+..+++.|.+++++|+... ......+.......-+...+.. ..+ -...|..+++++|+++.+++.-.+
T Consensus 33 i~~~~~~I~~~~~~g~~vvlV~Sga~-~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~q~llT~~ 111 (266)
T PRK12314 33 IEQLVFVISDLMNKGKEVILVSSGAI-GAGLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVVAQILLTRD 111 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeeCcc-cccceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 44566778888899999988755322 1122122211111000000000 000 125578888888888888776655
Q ss_pred Cc
Q psy4436 134 EE 135 (171)
Q Consensus 134 ~~ 135 (171)
..
T Consensus 112 ~~ 113 (266)
T PRK12314 112 DF 113 (266)
T ss_pred cc
Confidence 44
No 460
>PF14106 DUF4279: Domain of unknown function (DUF4279)
Probab=28.61 E-value=1.7e+02 Score=18.91 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEe
Q psy4436 115 ANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHV 151 (171)
Q Consensus 115 ~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v 151 (171)
..+-+.+|+.|.++...||....-...++.+...+..
T Consensus 9 ~eiT~~Lgi~Pt~~~~kG~~~~~~~~~~~~~~W~~~~ 45 (118)
T PF14106_consen 9 DEITRLLGIEPTETWRKGDRRSNPSRPRKESSWSLSS 45 (118)
T ss_pred HHHHHHHCCCceEEEecCCcccCCCcceeeceEEEec
Confidence 5566779999999999999998755333334333333
No 461
>PRK13695 putative NTPase; Provisional
Probab=28.45 E-value=2.1e+02 Score=19.92 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=34.0
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHh
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKAT 121 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~ 121 (171)
+...+.+..+.+.|..+.++++... ...+.+.+-...-.-..+..+..+-++|..++++.
T Consensus 113 ~~~~~~l~~~~~~~~~~i~v~h~~~---~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 113 PKFVKAVEEVLDSEKPVIATLHRRS---VHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHHHHHHHhCCCeEEEEECchh---hHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 4456778888788999999998632 22233332221111112334445557788877654
No 462
>KOG3938|consensus
Probab=27.86 E-value=70 Score=24.81 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCCcEEEEc
Q psy4436 111 TTHFANLKKATGIEYKDMVFFD 132 (171)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~vg 132 (171)
-+.|+++++.+.+++++++|.-
T Consensus 76 ~ELY~kIAe~F~Is~~dIlfcT 97 (334)
T KOG3938|consen 76 RELYQKIAEAFDISPDDILFCT 97 (334)
T ss_pred HHHHHHHHHHhcCCccceEEEe
Confidence 3789999999999999999965
No 463
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=27.84 E-value=80 Score=25.16 Aligned_cols=28 Identities=4% Similarity=0.029 Sum_probs=23.9
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+.||+..+++++|++.|+++++......
T Consensus 61 ~~FPdp~~mv~~L~~~G~klv~~i~P~i 88 (332)
T cd06601 61 GGFPNPKEMFDNLHNKGLKCSTNITPVI 88 (332)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEecCce
Confidence 4489999999999999999998887543
No 464
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=27.83 E-value=73 Score=24.30 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.|.+...++..+++|.+++.+|+++.
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 57799999999999999999998766
No 465
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.81 E-value=4.2e+02 Score=23.30 Aligned_cols=108 Identities=4% Similarity=-0.001 Sum_probs=60.6
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccc-cce--e-eEecCCcH----HHHHHHHHHhCCCCCcE
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQH-FDH--K-EIFPGQKT----THFANLKKATGIEYKDM 128 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~-fd~--~-~~~~~~k~----~~~~~~~~~~~~~~~~~ 128 (171)
..+.+...++.|++.|+++++---+....... .+..+.++.. +|. + .....+.. ..+..+++.+++. +
T Consensus 676 ~~~~~~~~l~~l~~~G~~i~ld~fg~~~~~~~-~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v 751 (799)
T PRK11359 676 HDTEIFKRIQILRDMGVGLSVDDFGTGFSGLS-RLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT---V 751 (799)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCchhhHH-HHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe---E
Confidence 35667889999999999999974222212222 4555553310 111 0 11112222 2334444455542 2
Q ss_pred EEEc-CCcccccccccCCce---EEEeCCCCcHHHHHHHHHHhh
Q psy4436 129 VFFD-DEERNSHDVSPLGVT---CIHVKDGMSHSVLHKGLKQWA 168 (171)
Q Consensus 129 l~vg-D~~~di~~a~~~G~~---~i~v~~g~~~~~~~~~~~~~~ 168 (171)
++=| ++......++++|+. +..+.......++...+++|.
T Consensus 752 ia~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~ 795 (799)
T PRK11359 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred EEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhcc
Confidence 2211 333467888889974 555666777888888888875
No 466
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=27.74 E-value=3.2e+02 Score=21.83 Aligned_cols=97 Identities=6% Similarity=-0.069 Sum_probs=56.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCc--HHHHHHHHHHhC--CCCCcEEEE
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQK--TTHFANLKKATG--IEYKDMVFF 131 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k--~~~~~~~~~~~~--~~~~~~l~v 131 (171)
.--+.+.+.++.|... +-++++-.... ...+.+.+....+-.- .......|- ..-+.-+.+..+ ++.-.+.||
T Consensus 86 ~kgEsl~DTarvls~y-~D~iv~R~~~~-~~~~~~a~~~~vPVIN-a~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~v 162 (334)
T PRK01713 86 GHKESMKDTARVLGRM-YDAIEYRGFKQ-SIVNELAEYAGVPVFN-GLTDEFHPTQMLADVLTMIENCDKPLSEISYVYI 162 (334)
T ss_pred CCCcCHHHHHHHHHHh-CCEEEEEcCch-HHHHHHHHhCCCCEEE-CCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEE
Confidence 3346678888888877 66666666555 6666666666544111 111111221 111223334454 566789999
Q ss_pred cCCcc-----cccccccCCceEEEeC-CCC
Q psy4436 132 DDEER-----NSHDVSPLGVTCIHVK-DGM 155 (171)
Q Consensus 132 gD~~~-----di~~a~~~G~~~i~v~-~g~ 155 (171)
||..+ .+..+...|+....+. .++
T Consensus 163 GD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (334)
T PRK01713 163 GDARNNMGNSLLLIGAKLGMDVRICAPKAL 192 (334)
T ss_pred CCCccCHHHHHHHHHHHcCCEEEEECCchh
Confidence 99744 3556667899887774 454
No 467
>PLN00094 aconitate hydratase 2; Provisional
Probab=27.67 E-value=90 Score=28.51 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred cccccCCcEEEEeCCCCC-CCce-----eccccCCcceecCceeeccCCCeeeeCCC---HHHHHHHHhhCCcEEEEE--
Q psy4436 10 PSVKKFPKLAVFDLDHTL-WPFH-----VYIDVIPPFKKIGDKVLDAGGAIIKYYRD---VPAILKYLKQNNCLVAAA-- 78 (171)
Q Consensus 10 ~~~~~~~k~vvfDlDgTL-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~l~~L~~~g~~i~i~-- 78 (171)
+.+...+++.||-++|-. +|.- .++....|++... ... ...|+ ..+.|+.||++|++++++
T Consensus 229 ~~~~~~i~~~vfkv~ge~ntddlspa~~a~sr~diplha~~--m~~------~~~~~~~~~~~~i~~lk~~g~~iivvG~ 300 (938)
T PLN00094 229 PPVPEKITVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALA--MLK------NPREGIQGPIAQIEELKKKGHPLAYVGD 300 (938)
T ss_pred CCCcceeEEEEEEecCcCccccCCCcccccCCCCchhHHHH--Hhc------CCCCCcccHHHHHHHHHHcCCceEEECC
Confidence 445567899999999954 3311 1111122222211 111 12344 788999999999999877
Q ss_pred ---cCCchhHHHHHHH
Q psy4436 79 ---SRTTEMLRAHQLV 91 (171)
Q Consensus 79 ---S~~~~~~~~~~~l 91 (171)
+++++ +.+-..+
T Consensus 301 nfG~GSSR-esA~nsl 315 (938)
T PLN00094 301 VVGTGSSR-KSATNSV 315 (938)
T ss_pred ceecCCch-HHHHHHH
Confidence 45666 4444344
No 468
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=27.56 E-value=56 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+++.
T Consensus 107 t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 107 SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 46789999999999999999998755
No 469
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.54 E-value=2e+02 Score=23.70 Aligned_cols=44 Identities=2% Similarity=-0.002 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCCcccccccccCCceEEEeCC
Q psy4436 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 153 (171)
Q Consensus 110 k~~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~~G~~~i~v~~ 153 (171)
+..-++++++.+|+++.-++--+.+..++..+.++..+.+...+
T Consensus 174 d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~niv~~~~ 217 (427)
T cd01971 174 DLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQFNLVLSPW 217 (427)
T ss_pred cHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEEcHh
Confidence 34668888888998776554445566688888887776665544
No 470
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.38 E-value=43 Score=25.20 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=9.1
Q ss_pred CCcEEEEeCCC
Q psy4436 15 FPKLAVFDLDH 25 (171)
Q Consensus 15 ~~k~vvfDlDg 25 (171)
.|+-+|||||=
T Consensus 98 ~PD~lvfDLDP 108 (228)
T cd04865 98 HPDELVIDLDP 108 (228)
T ss_pred CCCEEEEECCC
Confidence 58899999983
No 471
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.31 E-value=83 Score=24.19 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=23.9
Q ss_pred eeeeCCCH-HHHHHHHhhCCcEEEEEcCCch
Q psy4436 54 IIKYYRDV-PAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 54 ~~~~~~~v-~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+-.+.++. .++++.+++.|+.+.+.||...
T Consensus 135 EPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 135 EPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 33356664 6899999999999999999854
No 472
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.31 E-value=66 Score=24.68 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|++..
T Consensus 195 t~~~~~~~~~a~~~g~~iI~IT~~~~ 220 (285)
T PRK15482 195 KKEIVLCAEAARKQGATVIAITSLAD 220 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46788999999999999999998765
No 473
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.20 E-value=1.5e+02 Score=19.53 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEecCCcHHHHHHHHHHhCCCC
Q psy4436 59 RDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEY 125 (171)
Q Consensus 59 ~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~~~~k~~~~~~~~~~~~~~~ 125 (171)
+.+.+..+.+++.|+.++.+|..+. +....+++..++. |.. ..+++. .+.+.+++..
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~~~~--~~~---l~D~~~----~~~~~~gv~~ 100 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFAEKYGLP--FPL---LSDPDG----KLAKAYGVWG 100 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhCCC--ceE---EECCcc----HHHHHhCCcc
Confidence 4455666777778998888886655 6667788887764 322 223332 3455667654
No 474
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=27.06 E-value=45 Score=25.10 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=9.2
Q ss_pred CCcEEEEeCCC
Q psy4436 15 FPKLAVFDLDH 25 (171)
Q Consensus 15 ~~k~vvfDlDg 25 (171)
.|+.+|||||=
T Consensus 97 ~PD~lvfDLDP 107 (227)
T cd04862 97 RPDRIVFDLDP 107 (227)
T ss_pred CCCEEEEECCC
Confidence 58899999983
No 475
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.03 E-value=59 Score=23.97 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=28.4
Q ss_pred CeeeeCCC-HHHHHHHHhhCCcEEEEEcCCch---hHHHHHHHHh
Q psy4436 53 AIIKYYRD-VPAILKYLKQNNCLVAAASRTTE---MLRAHQLVDL 93 (171)
Q Consensus 53 ~~~~~~~~-v~~~l~~L~~~g~~i~i~S~~~~---~~~~~~~l~~ 93 (171)
.+..+.++ +.++++.+++.|+++.+.||+.. .+....+++.
T Consensus 74 GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 34445666 45899999999999999999832 2344445554
No 476
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.94 E-value=1.3e+02 Score=18.83 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=21.2
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
++.++.+.|.+.|++++--.+. ...++..|+.
T Consensus 1 e~~~~a~~l~~lG~~i~AT~gT------a~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYATEGT------AKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEEEEHHH------HHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEEEChHH------HHHHHHcCCC
Confidence 4678889999999877654432 2367778876
No 477
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=26.90 E-value=77 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.4
Q ss_pred eeCCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 56 KYYRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 56 ~~~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
+.+|+..++++.|+++|+++.+..+
T Consensus 61 ~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 61 ERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 4589999999999999999976543
No 478
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.89 E-value=1.6e+02 Score=21.53 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=50.7
Q ss_pred eCCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeEe---c-----CCcHHHHHH------HHHHhC
Q psy4436 57 YYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIF---P-----GQKTTHFAN------LKKATG 122 (171)
Q Consensus 57 ~~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~~---~-----~~k~~~~~~------~~~~~~ 122 (171)
..+...++++.+++.|++.+++=|... . .. .++ .+....|.+... | +-.++.+++ ...+.+
T Consensus 90 ~~~~~~~~i~~ik~~g~k~GialnP~T-~-~~-~~~--~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~ 164 (201)
T PF00834_consen 90 ATEDPKETIKYIKEAGIKAGIALNPET-P-VE-ELE--PYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENG 164 (201)
T ss_dssp GTTTHHHHHHHHHHTTSEEEEEE-TTS---GG-GGT--TTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHT
T ss_pred chhCHHHHHHHHHHhCCCEEEEEECCC-C-ch-HHH--HHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999999887643 1 11 121 222234444221 1 111233333 333444
Q ss_pred CCCCcEEEEcCCcc--cccccccCCceEEEeC
Q psy4436 123 IEYKDMVFFDDEER--NSHDVSPLGVTCIHVK 152 (171)
Q Consensus 123 ~~~~~~l~vgD~~~--di~~a~~~G~~~i~v~ 152 (171)
+.-.+.||-+.+ ++....++|+..+.+.
T Consensus 165 --~~~~I~vDGGI~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 165 --LDFEIEVDGGINEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp --CGSEEEEESSESTTTHHHHHHHT--EEEES
T ss_pred --CceEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 456788888887 6778888998877663
No 479
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.62 E-value=63 Score=24.33 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.++++.++++|.+++.+|+...
T Consensus 60 t~~~~~~~~~a~~~g~~ii~iT~~~~ 85 (268)
T TIGR00393 60 SLELLNLIPHLKRLSHKIIAFTGSPN 85 (268)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 46788999999999999999998644
No 480
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=26.59 E-value=68 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+++.++++.++++|.+++.+||...
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~ 130 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRAD 130 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46789999999999999999999755
No 481
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=26.54 E-value=67 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCCCcEEEEcCCc
Q psy4436 114 FANLKKATGIEYKDMVFFDDEE 135 (171)
Q Consensus 114 ~~~~~~~~~~~~~~~l~vgD~~ 135 (171)
....+++.|+..-+++.|||-.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~e 66 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDYE 66 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTEE
T ss_pred HHHHHHHcCCCCCCEEEEcCEE
Confidence 5666777889999999999854
No 482
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=26.40 E-value=55 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.2
Q ss_pred eeeeCCCHHHHHHHHhhCCc-EEEEEcC
Q psy4436 54 IIKYYRDVPAILKYLKQNNC-LVAAASR 80 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~-~i~i~S~ 80 (171)
.-.++..+..++..+++.|+ ++.++|+
T Consensus 94 ~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 94 KTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 44557789999999999998 5888886
No 483
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=26.31 E-value=3.2e+02 Score=21.33 Aligned_cols=97 Identities=7% Similarity=0.016 Sum_probs=56.1
Q ss_pred CHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhc---CcccccceeeE---ecC-C-cHHHHHHHHHHhCCCCCcEEEE
Q psy4436 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLF---NWNQHFDHKEI---FPG-Q-KTTHFANLKKATGIEYKDMVFF 131 (171)
Q Consensus 60 ~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~---~l~~~fd~~~~---~~~-~-k~~~~~~~~~~~~~~~~~~l~v 131 (171)
.+.++|+..+++||-++-+.-.+. +.++..++.. +.+-.+..... +.. + -..+...++++.+++ =++-.
T Consensus 3 ~~k~ll~~A~~~~yAV~AfN~~n~-e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--ValHL 79 (282)
T TIGR01858 3 STKYMLQDAQAGGYAVPAFNIHNL-ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LALHL 79 (282)
T ss_pred cHHHHHHHHHHcCCeEEEEEeCCH-HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 367889999999999877765555 6666666664 32222211111 011 0 123455666666664 22333
Q ss_pred --cCCcccccccccCCceEEEeCC-CCcHHH
Q psy4436 132 --DDEERNSHDVSPLGVTCIHVKD-GMSHSV 159 (171)
Q Consensus 132 --gD~~~di~~a~~~G~~~i~v~~-g~~~~~ 159 (171)
|.+...+..|-++|+.++.+.. ..+.++
T Consensus 80 DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee 110 (282)
T TIGR01858 80 DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQ 110 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEeecCCCCCHHH
Confidence 2334468888889999999943 344443
No 484
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=26.30 E-value=41 Score=24.59 Aligned_cols=43 Identities=9% Similarity=-0.109 Sum_probs=24.6
Q ss_pred eeeCCCHHHHHHHHhhC-CcEEEEEcCCchhHHHHHHHHhcCcc
Q psy4436 55 IKYYRDVPAILKYLKQN-NCLVAAASRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 55 ~~~~~~v~~~l~~L~~~-g~~i~i~S~~~~~~~~~~~l~~~~l~ 97 (171)
+.+.|-..+..+.|.+. |+.-+|+||+++...+....+..+..
T Consensus 37 IDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~ 80 (199)
T PF14597_consen 37 IDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAK 80 (199)
T ss_dssp ES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--E
T ss_pred ecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCe
Confidence 45567777888999985 69999999998866666666666544
No 485
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.22 E-value=72 Score=24.82 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCch
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
.+.+.+.++.++++|.+++.+|+...
T Consensus 102 t~~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 102 AKELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred cHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45688999999999999999998755
No 486
>PRK12559 transcriptional regulator Spx; Provisional
Probab=26.14 E-value=1.7e+02 Score=19.82 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHhhCCcEEEEE---cCCchhHHHHHHHHhcC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAA---SRTTEMLRAHQLVDLFN 95 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~---S~~~~~~~~~~~l~~~~ 95 (171)
++....+++.|.++|+..-.. .+....+....+++..+
T Consensus 10 C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~ 50 (131)
T PRK12559 10 CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRLTE 50 (131)
T ss_pred ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcC
Confidence 344566677777777554332 23333355555666643
No 487
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.04 E-value=1.6e+02 Score=19.23 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhCCcEEEEE---cCCchhHHHHHHHHhcCcc
Q psy4436 58 YRDVPAILKYLKQNNCLVAAA---SRTTEMLRAHQLVDLFNWN 97 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~---S~~~~~~~~~~~l~~~~l~ 97 (171)
++..+++++.|+++|+.+... ......+....+++.+|+.
T Consensus 9 C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~ 51 (114)
T TIGR00014 9 CSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLT 51 (114)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCc
Confidence 344566777777777654433 2222224455566666653
No 488
>PRK13663 hypothetical protein; Provisional
Probab=26.03 E-value=1.3e+02 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=30.5
Q ss_pred eeeeCCCHHHHHHHHhhCCcEE--EEEc---CCchhHHHHHHHHhcCccccc
Q psy4436 54 IIKYYRDVPAILKYLKQNNCLV--AAAS---RTTEMLRAHQLVDLFNWNQHF 100 (171)
Q Consensus 54 ~~~~~~~v~~~l~~L~~~g~~i--~i~S---~~~~~~~~~~~l~~~~l~~~f 100 (171)
++..-.+|.+++..+++.|+.+ +++| +.+....-+..|+++|+..|.
T Consensus 87 GItYd~dVLRLiD~fr~~gl~V~sVVITqy~~qp~a~~F~~rLe~~GIkvy~ 138 (493)
T PRK13663 87 GITYDQDVLRLIDDFRELGLYVGSVVITQYDGQPAADAFRNRLERLGIKVYR 138 (493)
T ss_pred CCchhHHHHHHHHHHHhcCceeeeEEEEecCCChHHHHHHHHHHHCCCceEE
Confidence 4455667888888888888765 3444 333334455677778877654
No 489
>KOG1154|consensus
Probab=25.95 E-value=3.1e+02 Score=21.11 Aligned_cols=76 Identities=9% Similarity=-0.000 Sum_probs=48.1
Q ss_pred HHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCccc-ccc-eeeE---e---------cCC-cHHHHHHHHHHhCCCC
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQ-HFD-HKEI---F---------PGQ-KTTHFANLKKATGIEY 125 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~-~fd-~~~~---~---------~~~-k~~~~~~~~~~~~~~~ 125 (171)
..+-+.+|+..|.++.++|.+-. .+-++.++.-.+.. -|. .... . ..+ -...|+.+..++++..
T Consensus 37 IVEqV~~L~~~G~evilVSSGaV-A~G~qrLr~~~~~s~s~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~i 115 (285)
T KOG1154|consen 37 IVEQVSELQRMGREVILVSSGAV-AFGRQRLRQELLPSSSMRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGITI 115 (285)
T ss_pred HHHHHHHHHhcCceEEEEecchh-hhhHHHhhhhhccchhHHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccch
Confidence 55677899999999999999866 66665655543331 010 0000 0 011 1366888889999999
Q ss_pred CcEEEEcCCccc
Q psy4436 126 KDMVFFDDEERN 137 (171)
Q Consensus 126 ~~~l~vgD~~~d 137 (171)
.+++.-.....|
T Consensus 116 AQvLvT~~Di~d 127 (285)
T KOG1154|consen 116 AQVLVTRNDILD 127 (285)
T ss_pred heeeecCcchhh
Confidence 998875544433
No 490
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=25.77 E-value=2.9e+02 Score=21.93 Aligned_cols=79 Identities=8% Similarity=-0.003 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce-------------------eeEecCCcHHHHHHHH
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH-------------------KEIFPGQKTTHFANLK 118 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~-------------------~~~~~~~k~~~~~~~~ 118 (171)
.|--.++++++++.|.+|-++|...........+...+++-|+.. ++..-.|..+--..-+
T Consensus 163 RpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~~e~~r~ 242 (309)
T cd01516 163 RPRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARA 242 (309)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHH
Confidence 455678899999999999999988663333333344444433311 0110123333345556
Q ss_pred HHhCC-CCCcEEEEcCCcc
Q psy4436 119 KATGI-EYKDMVFFDDEER 136 (171)
Q Consensus 119 ~~~~~-~~~~~l~vgD~~~ 136 (171)
+++|+ ++++++..+|-..
T Consensus 243 ~~~Gi~D~~ki~~~ddLv~ 261 (309)
T cd01516 243 REMGITDPNKILTLDDLVR 261 (309)
T ss_pred HHcCCCChhheeEHHHccc
Confidence 67888 7777777776665
No 491
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=25.62 E-value=1.3e+02 Score=24.94 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCcEEEEEcCC-chhHHHHHHHHhcCccc-------------ccceeeEecCCc--HHHHHHHHHHhCCC
Q psy4436 61 VPAILKYLKQNNCLVAAASRT-TEMLRAHQLVDLFNWNQ-------------HFDHKEIFPGQK--TTHFANLKKATGIE 124 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~-~~~~~~~~~l~~~~l~~-------------~fd~~~~~~~~k--~~~~~~~~~~~~~~ 124 (171)
+.++++ .+++|-+.+|.|=+ ..|...+..++...-.. .|....+ -.|+ ..+...++++.|++
T Consensus 4 l~~lv~-~~k~G~~~gI~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTG-mtP~dF~~~V~~iA~~~g~~ 81 (424)
T PF08013_consen 4 LKELVK-RHKAGEPVGIYSVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQFGGYTG-MTPADFRDFVREIADEVGFP 81 (424)
T ss_dssp -HHHHH-HHHTT--B-EEEE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT-TTTT-B-HHHHHHHHHHHHHHCT--
T ss_pred HHHHHH-HHhCCCCCceEEecCCCHHHHHHHHHHHHhcCCeEEEEeccccccccCCcCC-CCHHHHHHHHHHHHHHcCCc
Confidence 344444 66677776665522 12345555555433222 1111111 1333 26678888999999
Q ss_pred CCcEEEEcCCcc
Q psy4436 125 YKDMVFFDDEER 136 (171)
Q Consensus 125 ~~~~l~vgD~~~ 136 (171)
.+.+++=||...
T Consensus 82 ~~~iiLGGDHLG 93 (424)
T PF08013_consen 82 RDRIILGGDHLG 93 (424)
T ss_dssp GGGEEEEEEEES
T ss_pred hhhEEecCCCCC
Confidence 999999999764
No 492
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=25.44 E-value=50 Score=24.87 Aligned_cols=11 Identities=64% Similarity=1.029 Sum_probs=9.4
Q ss_pred CCcEEEEeCCC
Q psy4436 15 FPKLAVFDLDH 25 (171)
Q Consensus 15 ~~k~vvfDlDg 25 (171)
.|+.+|||||=
T Consensus 99 ~PD~~vfDLDP 109 (228)
T cd04864 99 HPDLMVFDLDP 109 (228)
T ss_pred CCCEEEEecCC
Confidence 58899999985
No 493
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.38 E-value=84 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCccccccccc----CCceEEEeCC
Q psy4436 112 THFANLKKATGIEYKDMVFFDDEERNSHDVSP----LGVTCIHVKD 153 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~vgD~~~di~~a~~----~G~~~i~v~~ 153 (171)
......++++|-..+-+++|||+..|+....+ .++....+..
T Consensus 209 k~VaEtArk~GkGveaI~hvgDGyDdli~G~kA~ve~~vDvfvvEG 254 (505)
T COG4018 209 KRVAETARKSGKGVEAILHVGDGYDDLIDGLKAAVEEVVDVFVVEG 254 (505)
T ss_pred HHHHHHHHHhCCCceeEEEecCCcHHHHHHHHHHHHhcCcEEEEcC
Confidence 34566678899999999999999997655444 5556666654
No 494
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.29 E-value=2.4e+02 Score=20.56 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=47.0
Q ss_pred cceeeEecCCcHHHHHHHHHHhCCCCCcEEE-EcCCcc--cccccccCC--ceEEEeC-CCCcHHHHHHHHHHhhhc
Q psy4436 100 FDHKEIFPGQKTTHFANLKKATGIEYKDMVF-FDDEER--NSHDVSPLG--VTCIHVK-DGMSHSVLHKGLKQWASK 170 (171)
Q Consensus 100 fd~~~~~~~~k~~~~~~~~~~~~~~~~~~l~-vgD~~~--di~~a~~~G--~~~i~v~-~g~~~~~~~~~~~~~~~~ 170 (171)
|...+..|-.|.+.=...+.++...|.+.+. ||.+.. -++.| .+| .+.+.+. +.-..+.+++.+++|.-+
T Consensus 9 F~~~~~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 9 FERDEGGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred hccCCCCCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence 4333455656777788888999999998776 888877 46666 333 3666663 334466667888877644
No 495
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.29 E-value=49 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcC
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASR 80 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~ 80 (171)
.|.+.++++..|++|.+++.+|+
T Consensus 116 s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788999999999999988874
No 496
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=25.21 E-value=98 Score=24.71 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=25.1
Q ss_pred eCCCCCCCceeccccCCcceecCceeeccCCCeeeeCCCHHHHHHHHhhCCcEEE
Q psy4436 22 DLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76 (171)
Q Consensus 22 DlDgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~i~ 76 (171)
|++||+....+.. ..+......+...++.+..++.|....
T Consensus 303 d~ggt~~~e~v~~---------------~~g~~~~~~~~~~~l~~~i~~~g~~p~ 342 (351)
T TIGR03700 303 DLDGTVVEEKIGH---------------DAGAKSPQALSKDELVRLIRDAGRVPV 342 (351)
T ss_pred CCCccCccceeec---------------cccCCCCCCCCHHHHHHHHHHcCCCee
Confidence 7788887644432 222233345778888888888887544
No 497
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=25.20 E-value=82 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHhhCC-cEEEEEcCC
Q psy4436 58 YRDVPAILKYLKQNN-CLVAAASRT 81 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g-~~i~i~S~~ 81 (171)
.+...+.++.|.+.| +++.+|..+
T Consensus 60 ~~~~~~~l~~l~~~g~v~i~~C~~~ 84 (122)
T PF02635_consen 60 DPPLQELLKELKEAGGVKIYVCETC 84 (122)
T ss_dssp SHCHHHHHHHHHHTTT-EEEEEHHH
T ss_pred cccHHHHHHHHHhcCCcEEEEcHHH
Confidence 567889999999997 999999875
No 498
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=25.19 E-value=1.3e+02 Score=20.45 Aligned_cols=66 Identities=8% Similarity=0.035 Sum_probs=30.9
Q ss_pred HHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccceeeE---ecCCcHHHHHHHHHHhCCCCCcEEEEcCC
Q psy4436 65 LKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI---FPGQKTTHFANLKKATGIEYKDMVFFDDE 134 (171)
Q Consensus 65 l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~~~~---~~~~k~~~~~~~~~~~~~~~~~~l~vgD~ 134 (171)
-..|++.||....+..... ... .....+......+.. .+..+...|..+++.+++++++++++.=.
T Consensus 6 d~~LqeMGItqW~Lr~P~~---L~g-~~~i~lp~~~rLliVs~~~p~~~~~L~~dVLrsl~L~~~q~~~ltpe 74 (128)
T PF03603_consen 6 DWLLQEMGITQWQLRRPEV---LQG-EIAISLPESCRLLIVSDELPQLDDPLFQDVLRSLKLTPEQVLHLTPE 74 (128)
T ss_dssp HHHHHHCT--EEEES-GGG---TS---S-----TT--EEEE-SS---TTSHHHHHHHHHTT--GGGEEEE-CC
T ss_pred HHHHHHcCCCeEEeCCccc---cCC-CccccCcccceEEEEeCCCCCccChHHHHHHHHcCCCHHHhhccCHH
Confidence 3467888888888887532 221 222233332222211 22222238999999999999999987543
No 499
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=25.14 E-value=89 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHhhCCcEEEEEcCCch
Q psy4436 61 VPAILKYLKQNNCLVAAASRTTE 83 (171)
Q Consensus 61 v~~~l~~L~~~g~~i~i~S~~~~ 83 (171)
+.+++..|+++|++++++-...+
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEecCC
Confidence 55889999999999999987655
No 500
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=25.14 E-value=3.6e+02 Score=21.53 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHhhCCcEEEEEcCCchhHHHHHHHHhcCcccccce-------------------e--eEecCC--c----
Q psy4436 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH-------------------K--EIFPGQ--K---- 110 (171)
Q Consensus 58 ~~~v~~~l~~L~~~g~~i~i~S~~~~~~~~~~~l~~~~l~~~fd~-------------------~--~~~~~~--k---- 110 (171)
.|--.++++++++.|.+|-++|...........+...+++-|+.. + ...+.. +
T Consensus 163 RpRH~~lI~eiR~~GarI~Li~DGDVa~ai~~~~~~s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgRL~~~~~~~g~~~ 242 (321)
T PRK12388 163 KPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISACAVKALGGDMQAELIDFCQAKGDYT 242 (321)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEEccCcccccccc
Confidence 455678889999999999999987653333333344444433310 0 111211 0
Q ss_pred -----HHHHHHHHHHhCCCCCcEEEEcCCcc
Q psy4436 111 -----TTHFANLKKATGIEYKDMVFFDDEER 136 (171)
Q Consensus 111 -----~~~~~~~~~~~~~~~~~~l~vgD~~~ 136 (171)
.+--..-++++|+++++++..+|-..
T Consensus 243 ~~~~~~~~e~~r~~~~GiD~~kv~~~ddLv~ 273 (321)
T PRK12388 243 ENRQIAEQERKRCKAMGVDVNRVYSLDELVR 273 (321)
T ss_pred cccccCHHHHHHHHHcCCChhhEeEHHHccC
Confidence 12334556778999999888888776
Done!