RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4436
         (171 letters)



>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase.  This family contains
           phosphatase enzymes and other proteins of the HAD
           superfamily. It includes MDP-1 which is a eukaryotic
           magnesium-dependent acid phosphatase.
          Length = 164

 Score =  203 bits (518), Expect = 8e-68
 Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 7/163 (4%)

Query: 15  FPKLAVFDLDHTLWPFHVYIDVIPPFKKI-GDKVLDAGGAIIKYYRDVPAILKYLKQNNC 73
            PKL VFDLD+TLWPF     V PPFKK     V+D  G  +  Y DVP+IL+ LK+   
Sbjct: 2   LPKLIVFDLDYTLWPFWCDTHVGPPFKKDKNGTVVDRRGEELSLYPDVPSILQELKEKGI 61

Query: 74  LVAAASRTTEMLRAHQLVDLFNWN------QHFDHKEIFPGQKTTHFANLKKATGIEYKD 127
            +A ASRT     A +L+ L + N       +FD+ EI+PG KTTHF  + K +G+ Y D
Sbjct: 62  TIAVASRTDAPDWARELLKLLHINDGPPAIDYFDYLEIYPGSKTTHFKKIHKKSGVPYSD 121

Query: 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASK 170
           M+FFDDE RN   VS LGVT + V DG++     +GL++W  +
Sbjct: 122 MLFFDDESRNIDVVSRLGVTFVLVPDGLTREEFERGLRKWRKR 164


>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1.  This model
           represents two closely related clades of sequences from
           eukaryotes and archaea. The mouse enzyme has been
           characterized as a phosphatase and has been positively
           identified as a member of the haloacid dehalogenase
           (HAD) superfamily by site-directed mutagenesis of the
           active site residues.
          Length = 174

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 19/174 (10%)

Query: 15  FPKLAVFDLDHTLWPFHVYIDVIPPFKKIG---DKVLDAGGAIIKYYRDVPAILKYLKQN 71
            P++ VFDLD TLW  ++   +  PFK +      ++D  G  +   ++V  +L+ LK  
Sbjct: 1   LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDA 60

Query: 72  NCLVAAASRTTEMLRAHQLVDLFN---------WNQHFDHKEIFP-GQKTTHFANL---- 117
              +A AS       A++++  F           +  FD +       K      +    
Sbjct: 61  GTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120

Query: 118 --KKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWAS 169
                + ++   ++FFDD   N  +V   GVT  +   GM      K L+ W S
Sbjct: 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTFKKILEMWRS 174


>gnl|CDD|227329 COG4996, COG4996, Predicted phosphatase [General function
           prediction only].
          Length = 164

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 9/127 (7%)

Query: 17  KLAVFDLDHTLWPFHVYIDVIPPFKKIG-DKVLDAGGAIIKYYRDVPAILKYLKQNNCLV 75
           +  VFD D TLW  H    + PPF+++  + + D+ G  +  + DV   LK+ + +  ++
Sbjct: 1   RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYIL 60

Query: 76  AAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPG-------QKTTHFANLKKATGIEYKDM 128
             AS   E  +A + +   +  Q+F +  I P         +     N ++   I+  ++
Sbjct: 61  GLASWNFED-KAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEI 119

Query: 129 VFFDDEE 135
           V+ DD  
Sbjct: 120 VYLDDRR 126


>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily
           IIIC.  This model represents the IIIC subfamily of the
           Haloacid Dehalogenase (HAD) superfamily of aspartate
           nucleophile hydrolases. Subfamily III (also including
           IIIA - TIGR01662 and IIIB - pfam03767) contains
           sequences which do not contain either of the insert
           domains (between the 1st and 2nd conserved catalytic
           motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549,
           TIGR01488, TIGR01494, TIGR01658, TIGR01544 and
           TIGR01545, or between the 2nd and 3rd, subfamily II -
           TIGR01460 and TIGR01484). Subfamily IIIC contains five
           relatively distantly related clades: a family of viral
           proteins (TIGR01684), a family of eukaryotic proteins
           called MDP-1 and a family of archaeal proteins most
           closely related to MDP-1 (TIGR01685), a family of
           bacteria including the Streptomyces FkbH protein
           (TIGR01686), and a small clade including the Pasteurella
           BcbF and EcbF proteins. The overall lack of species
           overlap among these clades may indicate a conserved
           function, but the degree of divergence between the
           clades and the differences in archetecture outside of
           the domain in some clades warns against such a
           conclusion. No member of this subfamily is characterized
           with respect to function, however the MDP-1 protein is a
           characterized phosphatase. All of the characterized
           enzymes within subfamily III are phosphatases, and all
           of the active site residues characteristic of
           HAD-superfamily phosphatases are present in subfamily
           IIIC.
          Length = 128

 Score = 48.2 bits (115), Expect = 9e-08
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 17  KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76
           K+ VFDLD+TLW     + V            D    +    +++   L+ LK+N  L+A
Sbjct: 1   KVIVFDLDNTLWTGENIV-VGE----------DPIIDLEVTIKEIRDKLQTLKKNGFLLA 49

Query: 77  AASRTT------EMLRAHQLVDLFNW-NQHFDHKEIFP-GQKTTHFAN--LKKATGIEYK 126
            AS         E+L+  +   +     ++FD   I     K+       LK    ++ K
Sbjct: 50  LASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKPK 109

Query: 127 DMVFFDDEERNSHDVS 142
            ++F DD   N+ +V 
Sbjct: 110 SILFVDDRPDNNEEVD 125


>gnl|CDD|181872 PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.
          Length = 199

 Score = 32.3 bits (74), Expect = 0.076
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 120 ATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 153
           A G    D VFFDD   N    + LG+T I V D
Sbjct: 153 AEGFSAADAVFFDDNADNIEAANALGITSILVTD 186


>gnl|CDD|233443 TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily,
           subfamily IA, variant 3 with third motif having DD or
           ED.  This model represents part of one structural
           subfamily of the Haloacid Dehalogenase (HAD) superfamily
           of aspartate-nucleophile hydrolases. The superfamily is
           defined by the presence of three short catalytic motifs.
           The subfamilies are defined based on the location and
           the observed or predicted fold of a so-called "capping
           domain", or the absence of such a domain. Subfamily I
           consists of sequences in which the capping domain is
           found in between the first and second catalytic motifs.
           Subfamily II consists of sequences in which the capping
           domain is found between the second and third motifs.
           Subfamily III sequences have no capping domain in either
           of these positions.The Subfamily IA and IB capping
           domains are predicted by PSI-PRED to consist of an alpha
           helical bundle. Subfamily I encompasses such a wide
           region of sequence space (the sequences are highly
           divergent) that representing it with a single model is
           impossible, resulting in an overly broad description
           which allows in many unrelated sequences. Subfamily IA
           and IB are separated based on an aparrent phylogenetic
           bifurcation. Subfamily IA is still too broad to model,
           but cannot be further subdivided into large chunks based
           on phylogenetic trees. Of the three motifs defining the
           HAD superfamily, the third has three variant forms : (1)
           hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s
           where _s_ refers to a small amino acid and _h_ to a
           hydrophobic one. All three of these variants are found
           in subfamily IA. Individual models were made based on
           seeds exhibiting only one of the variants each. Variant
           3 (this model) is found in the enzymes
           beta-phosphoglucomutase (TIGR01990) and
           deoxyglucose-6-phosphatase, while many other enzymes of
           subfamily IA exhibit this variant as well as variant 1
           (TIGR01549). These three variant models were created
           withthe knowledge that there will be overlap among them
           - this is by design and serves the purpose of
           eliminating the overlap with models of more distantly
           relatedHAD subfamilies caused by an overly broad single
           model [Unknown function, Enzymes of unknown
           specificity].
          Length = 177

 Score = 30.5 bits (69), Expect = 0.32
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 53  AIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTT 112
             +K    V A+L+ L+     +A    T       +LV        FD   I       
Sbjct: 76  EGLKPLPGVRALLEALRARGKKLALL--TNSPRADAKLVLELGLRALFDV-VIDSSDVGL 132

Query: 113 H------FANLKKATGIEYKDMVFFDDEERN 137
                  +    K  G++  + +F DD    
Sbjct: 133 GKPDPDIYLQALKKLGLKPSECLFVDDSPAG 163


>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
           haloacid dehalogenase-like (HAD) superfamily includes
           L-2-haloacid dehalogenase, epoxide hydrolase,
           phosphoserine phosphatase, phosphomannomutase,
           phosphoglycolate phosphatase, P-type ATPase, and many
           others, all of which use a nucleophilic aspartate in
           their phosphoryl transfer reaction. All members possess
           a highly conserved alpha/beta core domain, and many also
           possess a small cap domain, the fold and function of
           which is variable. Members of this superfamily are
           sometimes referred to as belonging to the DDDD
           superfamily of phosphohydrolases.
          Length = 139

 Score = 29.6 bits (67), Expect = 0.38
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 18  LAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAA 77
             +FDLD TL      I  I                 ++ Y  V   LK LK+    +A 
Sbjct: 1   AVLFDLDGTLLDSEPGIAEI---------------EELELYPGVKEALKELKEKGIKLAL 45

Query: 78  AS-RTTEMLRAHQLVDLFNWNQHFDH 102
           A+ ++   +   +L++    + +FD 
Sbjct: 46  ATNKSRREV--LELLEELGLDDYFDP 69


>gnl|CDD|136007 PRK06698, PRK06698, bifunctional
           5'-methylthioadenosine/S-adenosylhomocysteine
           nucleosidase/phosphatase; Validated.
          Length = 459

 Score = 30.0 bits (67), Expect = 0.64
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 58  YRDVPAILKYLKQNNCLVAAASR-TTEMLRA 87
           Y +V  I  Y+K+NNC +  AS   TE LRA
Sbjct: 332 YPNVKEIFTYIKENNCSIYIASNGLTEYLRA 362


>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport
          and metabolism].
          Length = 212

 Score = 29.2 bits (66), Expect = 0.95
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKK---IGDKVLDAGGAIIKYYRDVPAILKY 67
            KLAVFDLD TL    +  ++I    +   +G++VL      ++   D    L+ 
Sbjct: 4  MKKLAVFDLDGTL----INAELIDELARGAGVGEEVLAITERAMRGELDFEESLRL 55


>gnl|CDD|237311 PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional.
          Length = 229

 Score = 28.7 bits (64), Expect = 1.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 9  DPSVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGG 52
          + +  +FP+  +FDLD TL      +D  P      + +L A G
Sbjct: 5  EVAAVRFPRAVLFDLDGTL------LDSAPDMLATVNAMLAARG 42


>gnl|CDD|185197 PRK15297, PRK15297, putative fimbrial protein StiH; Provisional.
          Length = 359

 Score = 28.5 bits (63), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 123 IEYKDMVFFDDEERNSHDVSPLGVTCIHVKDGMSHSV 159
           IE KD+    D  +NSH  + +  TC +V DG + S+
Sbjct: 240 IEGKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSM 276


>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ.  [Biosynthesis of
           cofactors, prosthetic groups, and carriers, Heme,
           porphyrin, and cobalamin].
          Length = 475

 Score = 28.2 bits (63), Expect = 2.5
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 12  VKKFPKLAVF-DLDHTLWP--FHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYL 68
           V + P+++ F D +    P  +  ++  +     +     DA   II   +   A L  L
Sbjct: 252 VVRLPRISNFTDFE----PLRYEAFVKFLDLDDSLTG--CDA--VIIPGSKSTIADLYAL 303

Query: 69  KQNN 72
           KQ+ 
Sbjct: 304 KQSG 307


>gnl|CDD|233530 TIGR01686, FkbH, FkbH-like domain.  This model describes a domain
           of a family of proteins of unknown overall function. One
           of these, however, is a modular polyketide synthase 4800
           amino acids in length from Streptomyces avermilitis in
           which this domain is the C-terminal segment. By
           contrast, the FkbH protein from Streptomyces
           hygroscopicus aparently contains only this domain. The
           remaining members of the family all contain an
           additional N-terminal domain of between 200 and 275
           amino acids which show less than 20% identity to one
           another. It seems likely then that these proteins are
           involved in disparate functions, probably the
           biosynthesis of different natural products. For
           instance, the FkbH gene is found in a gene cluster
           believed to be responsible for the biosynthesis of
           unususal "PKS extender units" in the ascomycin pathway.
           This domain is composed of two parts, the first of which
           is a member of subfamily IIIC (TIGR01681) of the
           haloacid dehalogenase (HAD) superfamily of
           aspartate-nucleophile hydrolases. All of the
           characterized enzymes within subfamily III are
           phosphatases, and all of the active site residues
           characteristic of HAD-superfamily phosphatases are
           present in this domain. The C-terminal portion of this
           domain is unique to this family (by BLAST).
          Length = 320

 Score = 27.5 bits (61), Expect = 3.5
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 31/129 (24%)

Query: 16  PKLAVFDLDHTLW------PFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLK 69
            K+ V DLD+TLW           +++ P  K + +K                  +K LK
Sbjct: 3   LKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEK------------------IKTLK 44

Query: 70  QNNCLVAAASRTTEMLRAHQLVD-----LFNWNQHFDHKEIFPGQKTTHFANLKKATGIE 124
           +   L+A AS+  E   A ++ +     +    + FD + I  G K+     + K   + 
Sbjct: 45  KQGFLLALASKNDEDD-AKKVFERRKDFILQA-EDFDARSINWGPKSESLRKIAKKLNLG 102

Query: 125 YKDMVFFDD 133
               +F DD
Sbjct: 103 TDSFLFIDD 111


>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
           transport and metabolism].
          Length = 220

 Score = 27.1 bits (61), Expect = 4.8
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 25  HTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKY----YRDVPAILKYLKQNNCLVAAA 78
            T  P  V++ V  P + I +    AG  II +       +   ++ +K+        
Sbjct: 59  ITDLPLDVHLMVENPDRYI-EAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLV 115


>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16.
          Length = 82

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 56 KYYRDVPAILKYLKQ 70
          + Y +VPAIL +L++
Sbjct: 45 QTYLNVPAILYFLEK 59


>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of
           glutamate dehydrogenase, leucine dehydrogenase,
           phenylalanine dehydrogenase, and valine dehydrogenase.
           Amino acid dehydrogenase (DH) is a widely distributed
           family of enzymes that catalyzes the oxidative
           deamination of an amino acid to its keto acid and
           ammonia with concomitant reduction of NAD(P)+. This
           subfamily includes glutamate, leucine, phenylalanine,
           and valine DHs. Glutamate DH is a multi-domain enzyme
           that catalyzes the reaction from glutamate to
           2-oxyoglutarate and ammonia in the presence of NAD or
           NADP. It is present in all organisms.  Enzymes involved
           in ammonia assimilation are typically NADP+-dependent,
           while those involved in glutamate catabolism are
           generally NAD+-dependent.  As in other NAD+-dependent
           DHs, monomers in this family have 2 domains separated by
           a deep cleft. Here the c-terminal domain contains a
           modified NAD-binding Rossmann fold with 7 rather than
           the usual 6 beta strands and one strand anti-parrallel
           to the others. Amino acid DH-like NAD(P)-binding domains
           are members of the Rossmann fold superfamily and include
           glutamate, leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 217

 Score = 26.4 bits (58), Expect = 8.4
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 45  DKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFN 95
           D V +AGG I+ Y+  V        QN   ++  +          + D+ N
Sbjct: 149 DIVANAGGVIVSYFEWV--------QNLQRLSWDAEEVRSKLEQVMTDIHN 191


>gnl|CDD|223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General
           function prediction only].
          Length = 229

 Score = 26.4 bits (58), Expect = 8.5
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 27  LWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA----AASRTT 82
           L      +      + + +++L A   ++  Y +    LK L +   L      A     
Sbjct: 71  LLELLERLLGDEDAELV-EELLAALAKLLPDYPEALEALKELGKKYKLGILTNGARPHQE 129

Query: 83  EMLRAHQLVDLFNWNQHFDHKEI---FPGQKTTH--FANLKKATGIEYKDMVFFDDEERN 137
             LR   L+D      +FD   I       K     F    +  G+  ++ +F  D   N
Sbjct: 130 RKLRQLGLLD------YFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLEN 183


>gnl|CDD|227950 COG5663, COG5663, Uncharacterized conserved protein [Function
           unknown].
          Length = 194

 Score = 26.0 bits (57), Expect = 8.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 55  IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEI 105
               + V  +L  LK+ + L+   +R  ++ R      LF  N H+DH EI
Sbjct: 71  ALLAQLVKQVLPSLKEEHRLIYITARKADLTRITYAW-LFIQNIHYDHLEI 120


>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
          Length = 1453

 Score = 26.7 bits (59), Expect = 9.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 56  KYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNW 96
           +Y RDV A+   +    CL A   R T +    ++  L N 
Sbjct: 147 QYVRDVQAVYLTVGNGPCLSACRHRLTIIQERSRMFFLLNA 187


>gnl|CDD|171912 PRK13223, PRK13223, phosphoglycolate phosphatase; Provisional.
          Length = 272

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)

Query: 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVL 48
          + P+L +FDLD TL      +D +P      D++L
Sbjct: 11 RLPRLVMFDLDGTL------VDSVPDLAAAVDRML 39


>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
          Length = 416

 Score = 26.4 bits (58), Expect = 9.9
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 71  NNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKE 104
           +  L        + ++ H    L  +N  FDH +
Sbjct: 18  DESLYPIIRDICQEVKVHGDKALKMYNLTFDHTK 51


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,014,819
Number of extensions: 829449
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 38
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)