RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4436
(171 letters)
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 161 bits (409), Expect = 3e-51
Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 10 PSVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGD-KVLDAGGAIIKYYRDVPAILKYL 68
S+ + PKLAVFDLD+TLWPF V V PPF K D V D G ++ Y +VP +LK L
Sbjct: 21 QSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRL 80
Query: 69 KQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDM 128
+ AAASRT+E+ A+QL++LF+ ++F H+EI+PG K THF L++ TGI + M
Sbjct: 81 QSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQM 140
Query: 129 VFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASK 170
+FFDDE RN DVS LGVTCIH+++GM+ L +GL+ +A
Sbjct: 141 IFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAKA 182
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural
genomics, PSI-2, protei structure initiative; 1.71A
{Bacteroides fragilis} PDB: 3slr_A
Length = 387
Score = 55.3 bits (132), Expect = 8e-10
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 11/143 (7%)
Query: 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNC 73
KF K + DLD+T+W V D ++G + I K + + +K LK
Sbjct: 220 KFKKCLILDLDNTIWG-GVVGDDGWENIQVGHGL-----GIGKAFTEFQEWVKKLKNRGI 273
Query: 74 LVAAASRTTE---MLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVF 130
++A S+ E + ++ K + +++ I + MVF
Sbjct: 274 IIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVF 333
Query: 131 FDDE--ERNSHDVSPLGVTCIHV 151
DD ERN GVT +
Sbjct: 334 LDDNPFERNMVREHVPGVTVPEL 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 1e-04
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 8 LDPSVKK--FPKLAVFDLD--------HTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKY 57
L+P+ + F +L+VF +W + DV+ K+ L
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 58 YRDVPAI-LKYLKQNNCLVAAASRTTEMLRAHQ-LVDLFNWNQHFDHKEIFPGQKTTHFA 115
+P+I L+ + H+ +VD +N + FD ++ P +F
Sbjct: 426 IS-IPSIYLELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 116 N-----LKKATGIEYKDM---VFFD 132
+ LK E + VF D
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLD 499
Score = 26.7 bits (58), Expect = 5.2
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 32/102 (31%)
Query: 8 LDPSVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKY 67
LD + P+ + T P + I I + + RD A
Sbjct: 311 LDCRPQDLPREVL-----TTNPRRLSI--------IAESI-----------RDGLATWDN 346
Query: 68 LKQNNC--LVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFP 107
K NC L + +L + + FD +FP
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEY------RKMFDRLSVFP 382
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 33.6 bits (77), Expect = 0.011
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 10/103 (9%)
Query: 58 YRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTH---- 113
R +L K+N S L A + N D + +
Sbjct: 20 QRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPI-RELETNGVVDK--VLLSGELGVEKPE 76
Query: 114 ---FANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 153
F A + +D V DD N G+ ++ +
Sbjct: 77 EAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQ 119
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 33.8 bits (78), Expect = 0.016
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 60 DVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH-------------KEIF 106
+V AI+ L++ V S T + + DH I
Sbjct: 95 EVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARI- 153
Query: 107 PGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP---LGVTCIHVKD 153
+ ++ +A G D VFFDD N + LG+T I VKD
Sbjct: 154 -------YQHVLQAEGFSPSDTVFFDDNADN---IEGANQLGITSILVKD 193
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD
superfamily, ST genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides thetaiotaomicron}
Length = 234
Score = 32.9 bits (75), Expect = 0.032
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 13 KKFPKLAVFDLDHTLWPFHVYID 35
K+ K+ FD D TLW +
Sbjct: 5 KELIKVIAFDADDTLWSNEPFFQ 27
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 31.6 bits (72), Expect = 0.078
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAI--IKYYRDVPAILKYLKQN--- 71
K+ FDLD TL ++ K + ++ G + Y ++ ++K N
Sbjct: 3 KVIFFDLDDTLVDTSKLAEIA--RKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPY 60
Query: 72 --NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPG 108
+ L+ V + N F + PG
Sbjct: 61 HFDYLLRRLDLPYNPKWISAGVIAY-HNTKFAYLREVPG 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.12
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 5/19 (26%)
Query: 7 KLDPSVKKF-----PKLAV 20
KL S+K + P LA+
Sbjct: 24 KLQASLKLYADDSAPALAI 42
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 31.1 bits (70), Expect = 0.14
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 20 VFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAAS 79
FD D TLW Y + + +L ++N + +
Sbjct: 17 GFDGDDTLWKSEDYYRTA--EADFEAILSGYLDLGDSRMQQH--LLAVERRNLKIFGYGA 72
Query: 80 RTTEMLRAHQLVDLFNWNQHFDHKEIF 106
+ + ++L +
Sbjct: 73 KGMTLSMIETAIELTEARIEARDIQRI 99
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 30.8 bits (70), Expect = 0.17
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 16 PKLAVFDLDHTL 27
+LA+FDLDHTL
Sbjct: 4 RRLALFDLDHTL 15
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 30.2 bits (68), Expect = 0.25
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 17 KLAVFDLDHTLWPFH 31
KL FD+ +TL +
Sbjct: 5 KLVTFDVWNTLLDLN 19
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 30.2 bits (68), Expect = 0.26
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 17 KLAVFDLDHTLWPFH 31
+ FDLD+TL
Sbjct: 19 RAVFFDLDNTLIDTA 33
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 30.0 bits (68), Expect = 0.33
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 21 FDLDHTLWPFH 31
FD+D T+ F
Sbjct: 12 FDVDDTILDFQ 22
>3u26_A PF00702 domain protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG, unknown
function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 28.9 bits (65), Expect = 0.64
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 17 KLAVFDLDHTLWPFH 31
+ FD TL
Sbjct: 3 RAVFFDSLGTLNSVE 17
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 28.7 bits (65), Expect = 0.75
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 55 IKYYRDVPAILKYLKQNNCLVAAAS---RTTEMLRAHQLVDLF 94
Y + +LK L+ N +A AS +L L F
Sbjct: 90 ADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYF 132
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116,
PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY
structural genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 29.0 bits (65), Expect = 0.79
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 7 KLDPSVKKFPKLAVFDLDHTLWPFHV 32
K +V+ + D D T +P +
Sbjct: 13 KTLSTVEHPQYIVFCDFDETYFPHTI 38
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 28.5 bits (64), Expect = 0.84
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 21 FDLDHTLWPFH 31
FDLD T+W F
Sbjct: 10 FDLDDTIWAFS 20
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 28.4 bits (64), Expect = 1.0
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 55 IKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFD 101
+L LK+NN +A S + N +FD
Sbjct: 102 FMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFD 147
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
V +L +K + AS ++ + ++ FD
Sbjct: 94 VLKVLNEVKSQGLEIGLAS-SSVKADIFRALEENRLQGFFDI 134
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
V L+++K +A A+ +T A + + + ++FD
Sbjct: 89 VREALEFVKSKRIKLALAT-STPQREALERLRRLDLEKYFDV 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.5
Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 61/188 (32%)
Query: 4 IPHKLDPS-VKKFPKLAVFDLDHTLWPFH-VYI---DV---IPPFKKIGDKVLDAGGAII 55
+ ++PS V +F ++ L+ L F Y+ D+ + D L +I
Sbjct: 68 VSSLVEPSKVGQFDQV----LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 56 K-YYRDVPAILKYLKQ--NNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTT 112
K Y + + N+ L A L A IF GQ T
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----------------IFGGQGNT 166
Query: 113 H--FANLKK--ATGIEYKDMV--FFD-------DEERNSHDVSPLGVTCIHVKDGMSHSV 159
F L+ T Y +V + R + D G++
Sbjct: 167 DDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEK------VFTQGLN--- 214
Query: 160 LHKGLKQW 167
+ +W
Sbjct: 215 ----ILEW 218
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 27.7 bits (62), Expect = 1.7
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 29/132 (21%)
Query: 38 PPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWN 97
P + + +V A+ + L Q + + + L +++ F
Sbjct: 68 QPRDFTPEDFRAVMEEQSQPRPEVLALARDLGQR-YRMYSLNNEGRDLNEYRI-RTFGLG 125
Query: 98 QHFD-------------HKEIFPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSP- 143
+ + ++ L A + ++ V DD +N V
Sbjct: 126 EFLLAFFTSSALGVMKPNPAMY------RLG-LTLA-QVRPEEAVMVDDRLQN---VQAA 174
Query: 144 --LGVTCIHVKD 153
+G+ + D
Sbjct: 175 RAVGMHAVQCVD 186
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 28.0 bits (61), Expect = 1.7
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 24/92 (26%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76
L +FD+D TL P +KI +V L+ L+ +
Sbjct: 14 VLCLFDVDGTL---------TPARQKIDPEVAAF--------------LQKLRSRVQIGV 50
Query: 77 AASRTTEMLRAHQLVDLFNWNQHFDHKEIFPG 108
+ QL D + FD+ G
Sbjct: 51 VGGSDYCKIA-EQLGDGDEVIEKFDYVFAENG 81
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 27.6 bits (60), Expect = 1.8
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 26/160 (16%)
Query: 11 SVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQ 70
S P L +FD+D TL P +KI ++ D L+ L+Q
Sbjct: 1 SAAPGPALCLFDVDGTL---------TAPRQKITKEMDDF--------------LQKLRQ 37
Query: 71 NNCLVAAASRTTEMLRAHQLVDL---FNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKD 127
+ E ++ D+ +++ + + K N++ G
Sbjct: 38 KIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQ 97
Query: 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQW 167
+ + P +V G
Sbjct: 98 DLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCS 137
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase
superfamily, L-azetidine-2- carboxylate; HET: GOL;
1.38A {Pseudomonas}
Length = 240
Score = 27.5 bits (61), Expect = 1.9
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 16 PKLAVFDLDHTLWPFH 31
K FD TL +
Sbjct: 6 FKALTFDCYGTLIDWE 21
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 27.6 bits (62), Expect = 1.9
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
V + K+ LV AS + + +++ +F+ FD
Sbjct: 99 VREAVALCKEQGLLVGLAS-ASPLHMLEKVLTMFDLRDSFDA 139
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3;
HDHD3, haloacid dehalogenase-like hydrolase domain
containin structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 27.4 bits (61), Expect = 1.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 17 KLAVFDLDHTLWPF 30
+L +D+ TL
Sbjct: 2 RLLTWDVKDTLLRL 15
Score = 25.5 bits (56), Expect = 9.3
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 58 YRDVPAILKYLKQNNCLVAAAS----RTTEMLRAHQLVDLFNW 96
L+ + +A S R +L L + F++
Sbjct: 108 LDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDF 150
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 27.3 bits (61), Expect = 2.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 16 PKLAVFDLDHTL 27
L +FD+D TL
Sbjct: 4 RTLVLFDIDGTL 15
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 27.1 bits (60), Expect = 2.5
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 23 LDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTT 82
L H +W ++ +P + LD + ++ L+ +KQ A S T
Sbjct: 3 LTHVIWDMGETLNTVP-NTRYDHHPLDTY-PEVVLRKNAKETLEKVKQLGFKQAILSNTA 60
Query: 83 EMLRAHQ--LVDLFNWNQHFDH 102
++ F +FD
Sbjct: 61 TSDTEVIKRVLTNFGIIDYFDF 82
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the
6-AU sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 27.4 bits (60), Expect = 2.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 20 VFDLDHTLWPFHVYI 34
FD+D+ L+ I
Sbjct: 61 FFDIDNCLYKSSTRI 75
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 27.3 bits (61), Expect = 2.6
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
+L+ +K + + ++ +L F H +
Sbjct: 114 AWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKEL 155
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 27.0 bits (60), Expect = 3.2
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 17 KLAVFDLDHTLWPFH 31
K + D +TL F
Sbjct: 4 KAVLVDFGNTLVGFK 18
Score = 26.2 bits (58), Expect = 5.5
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 58 YRDVPAILKYLKQNNCLVAAAS----RTTEMLRAHQLVDLFN 95
Y D L+ LK N +A S R +L L F+
Sbjct: 97 YDDTLEFLEGLKSNGYKLALVSNASPRVKTLLEKFDLKKYFD 138
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein;
3.30A {Streptococcus phage C1}
Length = 465
Score = 27.2 bits (59), Expect = 3.2
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 70 QNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQ 109
N V+A+S L DLFN N E + Q
Sbjct: 216 TGNATVSASSEANREKLKKALTDLFNNNLEHLSGEFYGNQ 255
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 26.5 bits (59), Expect = 4.6
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
+ ++L L+ V AS + A ++ + F
Sbjct: 100 IRSLLADLRAQQISVGLASVSL---NAPTILAALELREFFTF 138
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 26.5 bits (59), Expect = 4.8
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
+L +K + + + +L F +
Sbjct: 113 ALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANL 154
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 26.4 bits (58), Expect = 5.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 122 GIEYKDMVFFDDEERNSHDVSPLGVTCIHVKD 153
++VF DD N LG+ I V+D
Sbjct: 174 KASPSEVVFLDDIGANLKPARDLGMVTILVQD 205
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded
by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 26.0 bits (58), Expect = 5.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 12 VKKFPKLAVFDLDHTL 27
++K KL +FD D TL
Sbjct: 1 MEKKKKLILFDFDSTL 16
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 26.4 bits (57), Expect = 5.7
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 10 PSVKKFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLK 69
VK K+A FDLD TL I Y ++P L+ L
Sbjct: 52 SGVKPQGKVAAFDLDGTL------ITTRSGKVFPTSP-----SDWRILYPEIPKKLQELA 100
Query: 70 QNNCLVAAASRTTEMLRAHQLVDLFN 95
+ + + R ++F
Sbjct: 101 AEGYKLVIFTNQMGIGRGKLPAEVFK 126
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 26.5 bits (57), Expect = 5.9
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 110 KTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCI--HVKDGMSHSVLHKGLKQW 167
KT G ++ M + ++ + + C H M + + LK W
Sbjct: 150 KTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATMELRLYSEPLKDW 209
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 26.1 bits (58), Expect = 6.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 20 VFDLDHTLWPFHVYIDVIPPFKKIGDKVLD---AGGAIIK 56
F P + +PP K + V D G +IK
Sbjct: 301 DFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK 340
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.1 bits (58), Expect = 6.3
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 107 PGQKTTHFANLKKATGIEYKDMVF-FD-DEER------NSHDVSPLGVTCIHV 151
PG KT+H A L K G +F FD D +R GV+C +
Sbjct: 113 PGNKTSHLAALLKNQG-----KIFAFDLDAKRLASMATLLAR---AGVSCCEL 157
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition,
xanthomonas Ca signaling protein-inhibitor complex;
HET: C2E; 1.90A {Xanthomonas campestris PV}
Length = 167
Score = 25.9 bits (58), Expect = 6.5
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 22/39 (56%)
Query: 18 LAVFDLDHTLWPFHVYIDVIPPFKKI--------GDKVL 48
L V D+D+ K I GD+VL
Sbjct: 45 LFVLDMDN--------------LKPINDRFGHLAGDRVL 69
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 25.7 bits (56), Expect = 7.9
Identities = 4/42 (9%), Positives = 8/42 (19%)
Query: 61 VPAILKYLKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDH 102
+ L V + + A L+
Sbjct: 116 WKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPAS 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,812,272
Number of extensions: 164047
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 74
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)