RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4436
(171 letters)
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 103 bits (258), Expect = 3e-29
Identities = 81/158 (51%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 14 KFPKLAVFDLDHTLWPFHVYIDVIPPFKKIGD-KVLDAGGAIIKYYRDVPAILKYLKQNN 72
+ PKLAVFDLD+TLWPF V V PPF K D V D G I+ Y +VP +L L+
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 73 CLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFD 132
VAAASRT+E+ A+QL++LF+ ++F +EI+PG K THF L TG+ + MVFFD
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFD 122
Query: 133 DEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWASK 170
DE RN DV LGVTCIH++DGMS L +GL+ +A
Sbjct: 123 DENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAKA 160
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 31.2 bits (70), Expect = 0.028
Identities = 20/152 (13%), Positives = 33/152 (21%), Gaps = 24/152 (15%)
Query: 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLV 75
PK +FD+D TL + +K V + K +
Sbjct: 7 PKAVIFDVDGTL------AKMNGRGPYDLEKCDTD-----VINPMVVELSKMYALMGYQI 55
Query: 76 AAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFAN-------------LKKATG 122
S + + + P K
Sbjct: 56 VVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIA 115
Query: 123 IEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154
+ + DD + +GV C V G
Sbjct: 116 PHFDVKLAIDDRTQVVEMWRRIGVECWQVASG 147
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 222
Score = 31.6 bits (70), Expect = 0.032
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 55 IKYYRDVPAILKYLKQNNCLVA---------AASRTTEMLRAHQLVDLFNWNQHFDHKEI 105
R + LK+ R + +L F++
Sbjct: 96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQ-VG 154
Query: 106 FPGQKTTHFANLKKATGIEYKDMVFFDDEERNSHDVSPLGVTCIHVKDG 154
+ + L + ++VF DD N +G+ I V +
Sbjct: 155 MIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNT 203
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 30.5 bits (67), Expect = 0.078
Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 8/139 (5%)
Query: 24 DHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTE 83
+ V P ++ D + K R + L++ A + T
Sbjct: 67 EENCRKCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTNTWL 126
Query: 84 MLRAHQL---VDLFNWNQHFDH-----KEIFPGQKTTHFANLKKATGIEYKDMVFFDDEE 135
RA + + HFD + + + L ++VF DD
Sbjct: 127 DDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIG 186
Query: 136 RNSHDVSPLGVTCIHVKDG 154
N LG+ I V+D
Sbjct: 187 ANLKPARDLGMVTILVQDT 205
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 30.3 bits (67), Expect = 0.095
Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 11/150 (7%)
Query: 17 KLAVFDLDHTLWPFHVYI-----DVIPPFKKIGDKVLDAGG----AIIKYYRDVPAILKY 67
+LA D+D L I + I +K G V G + +
Sbjct: 4 RLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPV 63
Query: 68 LKQNNCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKD 127
+N ++ + + +++ + + + + T + I+ +D
Sbjct: 64 FGENGGIMFDNDGSIKKFFSNEGTN--KFLEEMSKRTSMRSILTNRWREASTGFDIDPED 121
Query: 128 MVFFDDEERNSHDVSPLGVTCIHVKDGMSH 157
+ + E + V H+ +
Sbjct: 122 VDYVRKEAESRGFVIFYSGYSWHLMNRGED 151
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 28.5 bits (62), Expect = 0.42
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 28/101 (27%)
Query: 16 PKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLV 75
P L +FD+D TL P +KI ++ D L+ L+Q +
Sbjct: 3 PALCLFDVDGTL---------TAPRQKITKEMDDF--------------LQKLRQKIKIG 39
Query: 76 AAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFAN 116
++ + + + +FP + +
Sbjct: 40 VVGGS-----DFEKVQEQLGNDVVEKYDYVFPENGLVAYKD 75
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'
phosphatase, middle domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 195
Score = 27.0 bits (59), Expect = 1.0
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 9 DPSVKKFPKLAVFDLDHTLW---PFHVYIDVIPPFKKIGDKVLDA 50
VK K+A FDLD TL V+ ++ + ++
Sbjct: 14 ASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKK 58
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 27.1 bits (58), Expect = 1.1
Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 8/153 (5%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILK--YLKQNNCL 74
+ FDLD+TL ++ +V+ + Y + I +K +
Sbjct: 7 RAVFFDLDNTLIDTA------GASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKEC 60
Query: 75 VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDE 134
S +R + + + + + + I D+ E
Sbjct: 61 FHPYSTCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTE 120
Query: 135 ERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQW 167
R + L + + +
Sbjct: 121 LRKEVRLLLLTNGDRQTQREKIEACACQSYFDA 153
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 26.0 bits (57), Expect = 1.1
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 41 KKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVAAASRTTEMLRAHQLVD-LFNWNQH 99
+IG V + G + + L + +R L +
Sbjct: 11 ARIGLAVGEEGVPLASGRGYLV--------RKTLEEDVEALLDFVRREGLGKLVVGLPLR 62
Query: 100 FDHKEIFPGQKTTHFANLKKATGIEYKDMVFFDDE 134
D KE K +A G+E V DE
Sbjct: 63 TDLKESAQAGKVLPLVEALRARGVE----VELWDE 93
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 245
Score = 25.9 bits (55), Expect = 2.5
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76
K VFD TL DV G I + +R +L+ A
Sbjct: 3 KAVVFDAYGTL------FDVQSVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYA 56
Query: 77 AASRTTEMLRAHQLVDLFNWNQHFDHKEIFP 107
T A+ L L ++
Sbjct: 57 DFWSVTREALAYTLGTLGLEPDESFLADMAQ 87
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 26.1 bits (56), Expect = 2.7
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAII----KYYRDVPAILKYLKQNN 72
KL DLD TL + + + G ++ + + DV +I + L
Sbjct: 2 KLIAIDLDGTLLNSKHQVS--LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKT 59
Query: 73 CLVAA 77
+++A
Sbjct: 60 WVISA 64
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 25.6 bits (55), Expect = 2.7
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPF-KKIGDKVLDAGGAIIKYYRDVPAI-LKYLKQNNCL 74
++A DL+ L P ++ F +K G L A I Y + L+ L ++
Sbjct: 3 EIACLDLEGVLVP-----EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLK 57
Query: 75 VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKA 120
+ L+ + F + + F+
Sbjct: 58 LGDIQEVIATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMR 103
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 25.7 bits (55), Expect = 3.2
Identities = 20/157 (12%), Positives = 56/157 (35%), Gaps = 9/157 (5%)
Query: 17 KLAVFDLDHTLWPFHVYI-----DVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN 71
K D+D T+ + I + I + +G ++ G +++ +IL
Sbjct: 3 KAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAA-SILIGTSGP 61
Query: 72 NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131
+ + + R W + ++ FP +T++ ++A + ++ +
Sbjct: 62 VVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINV 121
Query: 132 DDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQWA 168
+ ++ L + + V G + V + + +
Sbjct: 122 ETVREIINE---LNLNLVAVDSGFAIHVKKPWINKGS 155
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 24.9 bits (53), Expect = 5.2
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCLVA 76
++ VFDLD TL ++ I ++ +K+ + R + + L K+
Sbjct: 3 RVFVFDLDGTLLNDNLEIS--EKDRRNIEKLSRKCYVVFASGRMLVSTLNVEKKYFK--- 57
Query: 77 AASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEY 125
T A+ ++ + E P + K + +
Sbjct: 58 ----RTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHW 102
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium
tepidum [TaxId: 1097]}
Length = 228
Score = 25.1 bits (53), Expect = 5.3
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 3/99 (3%)
Query: 17 KLAVFDLDHTLWPFHVYID--VIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCL 74
L +FD+D TL + ++ G D I + L
Sbjct: 3 TLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLE 62
Query: 75 VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTH 113
A + + + + LF + + G +
Sbjct: 63 RAEIADKFDKAKETYI-ALFRERARREDITLLEGVRELL 100
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 244
Score = 24.7 bits (52), Expect = 7.2
Identities = 16/156 (10%), Positives = 39/156 (25%), Gaps = 8/156 (5%)
Query: 17 KLAVFDLDHTLWPFHVYID-----VIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQN 71
L +FD+D TL P ID + + + G Y + + +
Sbjct: 2 VLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGS---DYCKIAEQLGDGDEVI 58
Query: 72 NCLVAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDMVFF 131
+ + H + Q+ +E+ + + + +
Sbjct: 59 EKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIE 118
Query: 132 DDEERNSHDVSPLGVTCIHVKDGMSHSVLHKGLKQW 167
+ T + K +++
Sbjct: 119 FRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKF 154
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas
sp., strain YL [TaxId: 306]}
Length = 220
Score = 24.5 bits (51), Expect = 7.2
Identities = 17/114 (14%), Positives = 27/114 (23%), Gaps = 6/114 (5%)
Query: 15 FPKLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAIIKYYRDVPAILKYLKQNNCL 74
+ K FDL TL DV + + G I +R +L+
Sbjct: 1 YIKGIAFDLYGTL------FDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNR 54
Query: 75 VAAASRTTEMLRAHQLVDLFNWNQHFDHKEIFPGQKTTHFANLKKATGIEYKDM 128
+ TE L + + + E K
Sbjct: 55 YVNFQQATEDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRR 108
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV)
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 24.1 bits (51), Expect = 9.0
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 17 KLAVFDLDHTLWPFHVYIDVIPPFKKIGDKVLDAGGAII----KYYRDVPAILKYLKQNN 72
K+ V D+D T + P F ++ G + Y + + LK
Sbjct: 3 KVIVTDMDGTFLNDAKTYN-QPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEI 61
Query: 73 CLV 75
V
Sbjct: 62 SFV 64
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 23.9 bits (51), Expect = 9.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 4 IPHKLDPSVKKFPKLAVFDLDH 25
P ++ V+ + V +D
Sbjct: 124 NPRDVEEGVENIEDVEVRTIDD 145
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 24.0 bits (50), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 17 KLAVFDLDHTL 27
KL +FD D TL
Sbjct: 5 KLILFDFDSTL 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,399
Number of extensions: 32257
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 51
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)