BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4437
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
+ CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+ DFF+
Sbjct: 5 QIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK-- 62
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKC 117
RF + C C++ I + + + +H C C C+ L+ D+
Sbjct: 63 -RFGT------------KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEF 109
Query: 118 FSRE-GKLFCRNDF 130
+ E G+L C+ D+
Sbjct: 110 YLMEDGRLVCKEDY 123
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
S + CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+ DFF
Sbjct: 2 SMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFF 61
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 17/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKC 122
Query: 65 SGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE- 121
+ C +G+ + ++ A + +H C C C L+ D+ + E
Sbjct: 123 AACQLGIPPTQVVRRAQ--------------DFVYHLHCFACVVCKRQLATGDEFYLMED 168
Query: 122 GKLFCRNDF 130
+L C+ D+
Sbjct: 169 SRLVCKADY 177
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF 115
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKC 68
Query: 65 SGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE- 121
+ C +G+ + ++ + +H C C C L+ D+ + E
Sbjct: 69 AACQLGIPPTQVVR--------------RAQDFVYHLHCFACVVCKRQLATGDEFYLMED 114
Query: 122 GKLFCRNDF 130
+L C+ D+
Sbjct: 115 SRLVCKADY 123
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
S+ + CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 2 STPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF 61
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSPV 61
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R +
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--L 65
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTL--SDKCF 118
SG +C+ C + I + ++ +H C C C + L D+
Sbjct: 66 FGNSG-----------ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 114
Query: 119 SREGKLFCRND 129
G LFC +D
Sbjct: 115 YINGSLFCEHD 125
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSPV 61
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R +
Sbjct: 6 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--L 63
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTL--SDKCF 118
SG +C+ C + I + ++ +H C C C + L D+
Sbjct: 64 FGNSG-----------ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH 112
Query: 119 SREGKLFCRND 129
G LFC +D
Sbjct: 113 YINGSLFCEHD 123
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 6 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 61
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+ R
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 59 SPVRFPSGCGVGLSSSMLISCAGCEKPILD-KFLLNVLERTWHADCVRCYDC--HHTLSD 115
F GL CA C+K I + + V ++ +H +C +C C H + D
Sbjct: 62 L---FGQD---GL-------CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGD 108
Query: 116 KCFSREGKLFCRNDFF 131
+ + C D +
Sbjct: 109 RYLLINSDIVCEQDIY 124
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+ R
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ I L L++ WH C +C C L+ + S++G +C +D+ +F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYH---AQFG 74
Query: 65 SGCGVG 70
SG G
Sbjct: 75 SGPSSG 80
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130
CAGC++ I L L++ WH C +C C L+ + S++G +C +D+
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDY 69
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREGKLFCR 53
C GC +P+L+ +L + ++ WH +C C DC + S F +G+ FC
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCE 66
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREGKLFCR 127
C GC +P+L+ +L + ++ WH +C C DC + S F +G+ FC
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCE 66
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREG--KLFCRNDFFRS 59
L CA C +PILD+ +L + + +H C C CH L F+ + ++ C DF R
Sbjct: 15 LEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73
Query: 60 PVRFPS 65
PS
Sbjct: 74 FASGPS 79
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 74 SMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREG--KLFCRNDF 130
+ L CA C +PILD+ +L + + +H C C CH L F+ + ++ C DF
Sbjct: 13 ATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCR---NDFFRS 59
+C C+K + L ++ +H C RC C++ LS + S G+++C+ N F+S
Sbjct: 17 TCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 76
Query: 60 PVRFPSGCGVGLSS 73
+ G G G SS
Sbjct: 77 KGNYDEGFGSGPSS 90
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 68 GVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFC 126
G+ + +C C+K + L ++ +H C RC C++ LS + S G+++C
Sbjct: 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYC 66
Query: 127 RNDF 130
+ F
Sbjct: 67 KPHF 70
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 72 SSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFC 126
SS C C KPI D ++ R WH C RC C H L+++ F +++ K+ C
Sbjct: 1 GSSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC 57
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 4 SCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFC 52
C C KPI D ++ R WH C RC C H L+++ F +++ K+ C
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC 57
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRNDFFRSPVRF 63
C+ C + + + WH +C RC C +L + +EG+++C+ + ++
Sbjct: 39 CSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKN--FG 96
Query: 64 PSGCGVGLSSSMLI 77
P G G G + L+
Sbjct: 97 PKGFGYGQGAGALV 110
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRN 128
C+ C + + + WH +C RC C +L + +EG+++C+
Sbjct: 39 CSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKG 89
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 23 RTWHADCVRCYDCHHTLSDKCFS-REGKLFCRNDFFRSPVRFPSGCGVGLSSSMLI 77
+ WH +C RC C +L + +EG+++C+ + ++ P G G G + L+
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKN--FGPKGFGYGQGAGALV 110
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 97 RTWHADCVRCYDCHHTLSDKCFS-REGKLFCRN 128
+ WH +C RC C +L + +EG+++C+
Sbjct: 57 KPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKG 89
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRNDFFRSPVRF 63
C C+K + + L + WH C++C C TL+ + EGK +C + + S +
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY-SAMFG 61
Query: 64 PSGCGVGLSSS 74
P G G G + S
Sbjct: 62 PKGFGRGGAES 72
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRN 128
C C+K + + L + WH C++C C TL+ + EGK +C +
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNH 53
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSRE-GKLFCRNDFFRSPVR 62
C C + I+ + ++ + +WH +C RC C L+D F + G+ CR R
Sbjct: 7 GCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65
Query: 63 FPS 65
PS
Sbjct: 66 GPS 68
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSRE-GKLFCR 127
SS C C + I+ + ++ + +WH +C RC C L+D F + G+ CR
Sbjct: 1 GSSGSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCR 56
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRN 54
M C C+K + ++ L + WH C++C C TL+ + +GK FC
Sbjct: 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 75 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRN 128
M C C+K + ++ L + WH C++C C TL+ + +GK FC
Sbjct: 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 73 SSMLISCAGCEKPILD----KFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGK-LFCR 127
SS C C KPI KF+ + WH++C C C +L K F + K +FC+
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFIC-FQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ 60
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 5 CAGCEKPILD----KFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGK-LFCR 53
C C KPI KF+ + WH++C C C +L K F + K +FC+
Sbjct: 8 CVACSKPISGLTGAKFIC-FQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ 60
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRNDFFRSPVRF 63
C C K I + ++ WHADC C C L+ + F+ E + +C D +++ V
Sbjct: 8 CVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV-DCYKNFVSG 65
Query: 64 PS 65
PS
Sbjct: 66 PS 67
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 73 SSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFC 126
SS C C K I + ++ WHADC C C L+ + F+ E + +C
Sbjct: 2 SSGSSGCVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC 55
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 18/126 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSR-EGKLFCRNDFFRSPVRF 63
CAGC++ I + WH C+DC L+ + + K C+ + ++
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV 65
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHA--DCVRCYDCHHTL-SDKCFSR 120
GC + P + + N +WHA +C C C L K
Sbjct: 66 CQGCHNAID------------PEVQRVTYNNF--SWHASTECFLCSCCSKCLIGQKFMPV 111
Query: 121 EGKLFC 126
EG +FC
Sbjct: 112 EGMVFC 117
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRNDFFRS 59
C C + + + ++WH C RC C +L + ++G+++C+ + ++
Sbjct: 10 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKN 66
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRN 128
C C + + + ++WH C RC C +L + ++G+++C+
Sbjct: 10 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKG 61
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 31/108 (28%)
Query: 32 CYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLS-----------SSMLI--S 78
C DC L D ++ +R P + CG S +SM +
Sbjct: 114 CEDCLRELKDP----------KDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPM 163
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCFSREGK 123
C C + D +R +HA V C+DC +LS + CF E K
Sbjct: 164 CEKCSREYHDPH-----DRRFHAQPVACFDCGPSLSFVGEGCFDDEIK 206
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCFSREGK 49
C C + D +R +HA V C+DC +LS + CF E K
Sbjct: 164 CEKCSREYHDPH-----DRRFHAQPVACFDCGPSLSFVGEGCFDDEIK 206
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRNDFFRS 59
C C + + + ++WH C RC C +L + ++G+++C+ + ++
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKN 173
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRN 128
C C + + + ++WH C RC C +L + ++G+++C+
Sbjct: 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKG 168
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRC 106
+ KL RN ++ PVR V +S + + G +K LLN ++ HA RC
Sbjct: 23 DAKLGFRNHWY--PVRL--SAEVAEASPVPVQLLG------EKVLLNRVDGVVHAIADRC 72
Query: 107 YDCHHTLSDK--CFSR 120
TLSDK C+S+
Sbjct: 73 LHRGVTLSDKVECYSK 88
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFC 52
CA C K L + + ++ WH +C+ C C L+ + F SR+ +C
Sbjct: 18 CARCSK-TLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYC 65
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFC 126
CA C K L + + ++ WH +C+ C C L+ + F SR+ +C
Sbjct: 18 CARCSK-TLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYC 65
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 5 CAGCEKPIL----DKFLLNVLERTWHADCVRCYDCHHTLSDKCF 44
CAGC+ PI ++ ++WH C C C L++K F
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 79 CAGCEKPIL----DKFLLNVLERTWHADCVRCYDCHHTLSDKCF 118
CAGC+ PI ++ ++WH C C C L++K F
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCR 53
C C K + + + WH C RC C +L S ++G+L+C+
Sbjct: 2 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 51
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCR 127
C C K + + + WH C RC C +L S ++G+L+C+
Sbjct: 2 CPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 51
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 68 GVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLF 125
G ++ +CA C++ I D L +R +H C RC C +L+D+ F+ ++ +L
Sbjct: 7 GPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELL 66
Query: 126 CRN 128
C +
Sbjct: 67 CND 69
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 4 SCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS-REGKLFCRN 54
+CA C++ I D L +R +H C RC C +L+D+ F+ ++ +L C +
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCND 69
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 22 ERTWHADCVRCYDCHHTLSDKCFSRE 47
ER WH DC C C +L + F E
Sbjct: 28 ERQWHNDCFNCKKCSLSLVGRGFLTE 53
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 96 ERTWHADCVRCYDCHHTLSDKCFSRE 121
ER WH DC C C +L + F E
Sbjct: 28 ERQWHNDCFNCKKCSLSLVGRGFLTE 53
>pdb|1QN0|A Chain A, Solution Structure Of Desulfovibrio Gigas
Ferrocytochrome C3, Nmr, 20 Structures
pdb|1QN1|A Chain A, Solution Structure Of Desulfovibrio Gigas
Ferricytochrome C3, Nmr, 15 Structures
Length = 112
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 14 DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS 45
+K L V + H D V+C DCHH DK ++
Sbjct: 17 EKNLTVVFNHSTHKD-VKCDDCHHQPGDKQYA 47
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 88 DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS 119
+K L V + H D V+C DCHH DK ++
Sbjct: 17 EKNLTVVFNHSTHKD-VKCDDCHHQPGDKQYA 47
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLF 51
C GC K I+ + WH DC C +C + F +G+ F
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDF 65
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLF 125
C GC K I+ + WH DC C +C + F +G+ F
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDF 65
>pdb|1WAD|A Chain A, Cytochrome C3 With 4 Heme Groups And One Calcium Ion
Length = 112
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 14 DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS 45
+K L V + H D V+C DCHH DK ++
Sbjct: 17 EKNLTVVFNHSTHKD-VKCDDCHHDPGDKQYA 47
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 88 DKFLLNVLERTWHADCVRCYDCHHTLSDKCFS 119
+K L V + H D V+C DCHH DK ++
Sbjct: 17 EKNLTVVFNHSTHKD-VKCDDCHHDPGDKQYA 47
>pdb|2P7S|A Chain A, Enzymatic And Structural Characterisation Of Amphinase, A
Novel Cytotoxic Ribonuclease From Rana Pipiens Oocytes
Length = 114
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 10 KPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRS---PV----R 62
KP D+ + + V ++C+ T++D ++ +G+ N F S PV R
Sbjct: 1 KPKEDREWEKFKTKHITSQSVADFNCNRTMNDPAYTPDGQCKPINTFIHSTTGPVKEICR 60
Query: 63 FPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRC---YDCHHTLSDKC 117
+G V SS+ + C+ PI K+ T + C+ C Y H + KC
Sbjct: 61 RATG-RVNKSSTQQFTLTTCKNPIRCKY---SQSNTTNFICITCRDNYPVHFVKTGKC 114
>pdb|2P6Z|A Chain A, Enzymatic And Structural Characterisation Of Amphinase, A
Novel Cytotoxic Ribonuclease From Rana Pipiens Oocytes
pdb|2P6Z|B Chain B, Enzymatic And Structural Characterisation Of Amphinase, A
Novel Cytotoxic Ribonuclease From Rana Pipiens Oocytes
Length = 115
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 10 KPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRS---PV----R 62
KP D+ + + V ++C+ T++D ++ +G+ N F S PV R
Sbjct: 2 KPKEDREWEKFKTKHITSQSVADFNCNRTMNDPAYTPDGQCKPINTFIHSTTGPVKEICR 61
Query: 63 FPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRC---YDCHHTLSDKC 117
+G V SS+ + C+ PI K+ T + C+ C Y H + KC
Sbjct: 62 RATG-RVNKSSTQQFTLTTCKNPIRCKY---SQSNTTNFICITCRDNYPVHFVKTGKC 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.144 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,208,008
Number of Sequences: 62578
Number of extensions: 155624
Number of successful extensions: 720
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 70
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)