BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4437
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGCE+PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|P53411|LHX1_CHICK LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
Length = 406
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|Q9H2C1|LHX5_HUMAN LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1
Length = 402
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 23/137 (16%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
M++ CAGCE+PILD+FLLNVL+R WH CV+C +C LS+KCFSREGKL+C+NDFFR
Sbjct: 1 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFR-- 58
Query: 61 VRFPS---GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--- 114
RF + GC G+S S L+ A + +H +C C C+ LS
Sbjct: 59 -RFGTKCAGCAQGISPSDLVRKA--------------RSKVFHLNCFTCMVCNKQLSTGE 103
Query: 115 DKCFSREGKLFCRNDFF 131
+ E K C++D+
Sbjct: 104 ELYVIDENKFVCKDDYL 120
>sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 23/137 (16%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
M++ CAGCE+PILD+FLLNVL+R WH CV+C +C LS+KCFSREGKL+C+NDFFR
Sbjct: 1 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFR-- 58
Query: 61 VRFPS---GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--- 114
RF + GC G+S S L+ A + +H +C C C+ LS
Sbjct: 59 -RFGTKCAGCAQGISPSDLVRKA--------------RSKVFHLNCFTCMVCNKQLSTGE 103
Query: 115 DKCFSREGKLFCRNDFF 131
+ E K C++D+
Sbjct: 104 ELYVIDENKFVCKDDYL 120
>sp|P61375|LHX5_MOUSE LIM/homeobox protein Lhx5 OS=Mus musculus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 23/137 (16%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
M++ CAGCE+PILD+FLLNVL+R WH CV+C +C LS+KCFSREGKL+C+NDFFR
Sbjct: 1 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFR-- 58
Query: 61 VRFPS---GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--- 114
RF + GC G+S S L+ A + +H +C C C+ LS
Sbjct: 59 -RFGTKCAGCAQGISPSDLVRKA--------------RSKVFHLNCFTCMVCNKQLSTGE 103
Query: 115 DKCFSREGKLFCRNDFF 131
+ E K C++D+
Sbjct: 104 ELYVIDENKFVCKDDYL 120
>sp|P37137|LHX5_XENLA LIM/homeobox protein Lhx5 OS=Xenopus laevis GN=lhx5 PE=1 SV=2
Length = 402
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 23/137 (16%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
M+ CAGCE+PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+ DFFR
Sbjct: 1 MMAHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFR-- 58
Query: 61 VRFPS---GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--- 114
RF + GC +G+S S L+ A + +H +C C C+ LS
Sbjct: 59 -RFGTKCAGCSLGISPSDLVRKA--------------RNKVFHLNCFTCMVCNKQLSTGE 103
Query: 115 DKCFSREGKLFCRNDFF 131
+ E K C+ D+
Sbjct: 104 ELYIIDENKFVCKEDYI 120
>sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
Length = 405
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 19/134 (14%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGCE+PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFR--- 57
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLL-NVLERTWHADCVRCYDCHHTLS---DKC 117
RF CAGC + I L+ + +H +C C C+ LS +
Sbjct: 58 RF------------GTKCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELY 105
Query: 118 FSREGKLFCRNDFF 131
E K C++D+
Sbjct: 106 IIDENKFVCKDDYL 119
>sp|P52889|LHX5_DANRE LIM/homeobox protein Lhx5 OS=Danio rerio GN=lhx5 PE=2 SV=1
Length = 399
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 23/137 (16%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
M++ CAGCE+PILD+FLLNVL+R WHA CV+C +C+ L++KCFSR+GKL+C+ DFFR
Sbjct: 1 MMVHCAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFR-- 58
Query: 61 VRFPS---GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--- 114
RF + GC G+S S L+ A + +H +C C C+ LS
Sbjct: 59 -RFGTKCAGCLQGISPSDLVRRA--------------RSKVFHLNCFTCMVCNKQLSTGE 103
Query: 115 DKCFSREGKLFCRNDFF 131
+ E K C+ D+
Sbjct: 104 ELYVIDENKFVCKEDYL 120
>sp|P48742|LHX1_HUMAN LIM/homeobox protein Lhx1 OS=Homo sapiens GN=LHX1 PE=1 SV=2
Length = 406
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
GN=LHX1 PE=2 SV=1
Length = 406
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
Length = 406
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|P63007|LHX1_RAT LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|P63006|LHX1_MOUSE LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
Length = 406
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|P63008|LHX1_MESAU LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ CAGC++PILD+FLLNVL+R WH CV+C +C L++KCFSREGKL+C+NDFFR
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS---DKCF 118
+GC G+S S L+ A + +H +C C C+ LS +
Sbjct: 61 TKCAGCAQGISPSDLVRRA--------------RSKVFHLNCFTCMMCNKQLSTGEELYI 106
Query: 119 SREGKLFCRNDFF 131
E K C+ D+
Sbjct: 107 IDENKFVCKEDYL 119
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC + I+D+F+L VL+R WH+ C++C DC L+DKCFSR ++C++DFF+ RF
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDDFFK---RFG 84
Query: 65 SGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ CA C++ I + + + +H C C C L+ D+ + E
Sbjct: 85 T------------KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLME 132
Query: 122 -GKLFCRNDF 130
+L C+ D+
Sbjct: 133 DSRLVCKADY 142
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
SS + CAGC + I+D+F+L VL+R WH+ C++C DC L+DKCFSR ++C++DFF
Sbjct: 21 SSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDDFF 80
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+ RF
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFK---RFG 87
Query: 65 SGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ CA C+ I + + + +H C C C L+ D+ + E
Sbjct: 88 T------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME 135
Query: 122 -GKLFCRNDF 130
+L C+ D+
Sbjct: 136 DSRLVCKADY 145
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFF 83
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC + I+D+F+L VL+R WH+ C++C DC L++KCFSR ++C++DFF+ RF
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEKCFSRGDSVYCKDDFFK---RFG 84
Query: 65 SGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ CA C++ I + + E +H C C C L+ D+ + E
Sbjct: 85 T------------KCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLME 132
Query: 122 -GKLFCRNDF 130
+L C+ D+
Sbjct: 133 DSRLVCKADY 142
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC + I+D+F+L VL+R WH+ C++C DC L++KCFSR ++C++DFF
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEKCFSRGDSVYCKDDFF 80
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC + I+D+F+L VL+R WH+ C++C DC L++KCFSR ++C+ DFF+ RF
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFK---RFG 84
Query: 65 SGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ CA C++ I + + + +H C C C L+ D+ + E
Sbjct: 85 T------------KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLME 132
Query: 122 -GKLFCRNDF 130
+L C+ D+
Sbjct: 133 DSRLVCKADY 142
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC + I+D+F+L VL+R WH+ C++C DC L++KCFSR ++C+ DFF
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFF 80
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+ RF
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK---RFG 90
Query: 65 SGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ CA C+ I + + + +H C C C L+ D+ + E
Sbjct: 91 T------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME 138
Query: 122 -GKLFCRNDF 130
+L C+ D+
Sbjct: 139 DSRLVCKADY 148
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF 86
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
+ CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+ DFF+
Sbjct: 26 QIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK-- 83
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKC 117
RF + C C++ I + + + +H C C C+ L+ D+
Sbjct: 84 -RFGT------------KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEF 130
Query: 118 FSRE-GKLFCRNDF 130
+ E G+L C+ D+
Sbjct: 131 YLMEDGRLVCKEDY 144
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 69 VGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRN 128
+G+ + CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+
Sbjct: 20 LGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKE 79
Query: 129 DFF 131
DFF
Sbjct: 80 DFF 82
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 19/134 (14%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60
+ CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+ DFF+
Sbjct: 26 QIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK-- 83
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLS--DKC 117
RF + C C++ I + + + +H C C C+ L+ D+
Sbjct: 84 -RFGT------------KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEF 130
Query: 118 FSRE-GKLFCRNDF 130
+ E G+L C+ D+
Sbjct: 131 YLMEDGRLVCKEDY 144
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 69 VGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRN 128
+G+ + CAGC + ILDKF+L VL+R WH+ C++C DC L+D+CFSR G ++C+
Sbjct: 20 LGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKE 79
Query: 129 DFF 131
DFF
Sbjct: 80 DFF 82
>sp|Q8UVR3|LMX1B_XENLA LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis
GN=lmx1b.1 PE=2 SV=1
Length = 400
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++PI D+FL+ V E +WH +C++C C L+ C+ R+ KLFC+ D+
Sbjct: 56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDY-------- 107
Query: 65 SGCGVGLSSSMLISCAGC-EKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE 121
C+GC EK +F++ LE +H C C C L D+ +E
Sbjct: 108 -------QQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKE 160
Query: 122 GKLFCRNDF 130
G+L C++D+
Sbjct: 161 GQLLCKSDY 169
>sp|P20154|LIN11_CAEEL Protein lin-11 OS=Caenorhabditis elegans GN=lin-11 PE=1 SV=2
Length = 405
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CA C +PILD+++ VL + WH C+RC DC +S CFSR+G + C+ DF R R+
Sbjct: 68 CAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSRDGLILCKTDFSR---RYS 124
Query: 65 SGCGVGLSSSMLISCAGCEKPILDKFLL-NVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
CAGC+ + + L+ ++ +H C +C C L D+ + E
Sbjct: 125 Q------------RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIME 172
Query: 122 GKLF-CRNDF 130
G F C++DF
Sbjct: 173 GNRFVCQSDF 182
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GCE I D+F+L V ++ WH+ ++C DC LS+KCFSR +FC++DFF+
Sbjct: 282 CTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSEKCFSRGNLVFCKDDFFKRFGTKC 341
Query: 65 SGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE- 121
+ CG G+ + +I A + +H + C+ CH + D+ + E
Sbjct: 342 TACGHGIPPTEVIRRAQ--------------DNVYHLEGFCCFLCHEKMGTGDQFYLLED 387
Query: 122 GKLFCRNDF 130
+L C+ D+
Sbjct: 388 NRLVCKKDY 396
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
C GCE I D+F+L V ++ WH+ ++C DC LS+KCFSR +FC++DFF
Sbjct: 282 CTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSEKCFSRGNLVFCKDDFF 334
>sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gallus GN=LMX1B PE=2 SV=1
Length = 377
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++PI D+FL+ V E +WH +C++C C L+ C+ R+ KL+C+ D+
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTTSCYFRDRKLYCKQDY-------- 84
Query: 65 SGCGVGLSSSMLISCAGC-EKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE 121
C+GC EK +F++ LE +H C C C L D+ +E
Sbjct: 85 -------QQLFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKE 137
Query: 122 GKLFCRNDF 130
G+L C++D+
Sbjct: 138 GQLLCKSDY 146
>sp|O88609|LMX1B_MOUSE LIM homeobox transcription factor 1-beta OS=Mus musculus GN=Lmx1b
PE=2 SV=2
Length = 372
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++PI D+FL+ V E +WH +C++C C L+ C+ R+ KL+C+ D+
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY-------- 84
Query: 65 SGCGVGLSSSMLISCAGC-EKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE 121
C+GC EK +F++ LE +H C C C L D+ +E
Sbjct: 85 -------QQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKE 137
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 138 GQLLCKGDY 146
>sp|Q60564|LMX1B_MESAU LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus
auratus GN=LMX1B PE=2 SV=1
Length = 369
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++PI D+FL+ V E +WH +C++C C L+ C+ R+ KL+C+ D+
Sbjct: 23 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY-------- 74
Query: 65 SGCGVGLSSSMLISCAGC-EKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE 121
C+GC EK +F++ LE +H C C C L D+ +E
Sbjct: 75 -------QQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKE 127
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 128 GQLLCKGDY 136
>sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B
PE=1 SV=2
Length = 379
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++PI D+FL+ V E +WH +C++C C L+ C+ R+ KL+C+ D+
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY-------- 84
Query: 65 SGCGVGLSSSMLISCAGC-EKPILDKFLLNVLERTWHADCVRCYDCHHTL--SDKCFSRE 121
C+GC EK +F++ LE +H C C C L D+ +E
Sbjct: 85 -------QQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKE 137
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 138 GQLLCKGDY 146
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 54/79 (68%), Gaps = 6/79 (7%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR L+C++DFF+ RF
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESLYCKDDFFK---RFG 72
Query: 65 S---GCGVGLSSSMLISCA 80
+ C +G+ + ++ A
Sbjct: 73 TKCAACQLGIPPTQVVRRA 91
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 71 LSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130
L + CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR L+C++DF
Sbjct: 8 LGGKEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESLYCKDDF 67
Query: 131 F 131
F
Sbjct: 68 F 68
>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
Length = 397
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++R V
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + E +H C C C+ TL+ D
Sbjct: 131 QRCARCHLGISASEMV--------------MRARESVYHLSCFTCTTCNKTLTTGDHFGM 176
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 177 KDNLVYCRAHF 187
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 131
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
PE=2 SV=1
Length = 382
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++ ILD+FLL + + WH CV+C C L CF R+ KL+C+ D+ +
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEK------ 88
Query: 65 SGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ C GC + I ++F++ + +H C C C L D+ +E
Sbjct: 89 ---------LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKE 139
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 140 GQLLCKGDY 148
>sp|Q68EY3|LHX9_XENLA LIM/homeobox protein Lhx9 OS=Xenopus laevis GN=lhx9 PE=2 SV=1
Length = 331
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRSPVR 62
CAGC I D++ L +++ WH C++C +C TL + CF+++G ++C+ D++R V+
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDYYRFSVK 132
Query: 63 FPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSR 120
+ C +G+S+S ++ + E +H C C C+ TLS D+ +
Sbjct: 133 RCARCHLGISASEMV--------------MRARESVYHLSCFTCTTCNKTLSTGDQFGMK 178
Query: 121 EGKLFCRNDF 130
E ++CR F
Sbjct: 179 ENLVYCRIHF 188
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CF 118
R PS L+ CAGC I D++ L +++ WH C++C +C TL + CF
Sbjct: 60 TRMPS-----LNPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLTLESELTCF 114
Query: 119 SREGKLFCRNDFF 131
+++G ++C+ D++
Sbjct: 115 AKDGSIYCKEDYY 127
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++R V
Sbjct: 71 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + + +H C C C+ TL+ D
Sbjct: 131 QRCARCHLGISASEMV--------------MRARDSVYHLSCFTCSTCNKTLTTGDHFGM 176
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 177 KDSLVYCRAHF 187
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 131
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++
Sbjct: 71 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++R V
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + + +H C C C+ TL+ D
Sbjct: 131 QRCARCHLGISASEMV--------------MRARDSVYHLSCFTCSTCNKTLTTGDHFGM 176
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 177 KDSLVYCRAHF 187
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 131
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++R V
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + + +H C C C+ TL+ D
Sbjct: 131 QRCARCHLGISASEMV--------------MRARDSVYHLSCFTCSTCNKTLTTGDHFGM 176
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 177 KDSLVYCRAHF 187
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 131
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125
>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
Length = 396
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++R V
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + + +H C C C+ TL+ D
Sbjct: 131 QRCARCHLGISASEMV--------------MRARDSVYHLSCFTCTTCNKTLTTGDHFGM 176
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 177 KDNLVYCRVHF 187
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 131
CAGC I D++ L +++ WH C++C +C L + CF+++G ++C+ D++
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFFRS-PV 61
CAGC I D++ L +++ WH C++C +C L + CFS++G ++C+ D++R V
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DKCFS 119
+ + C +G+S+S ++ + + +H +C C C+ L+ D
Sbjct: 113 QRCARCHLGISASEMV--------------MRARDLVYHLNCFTCTTCNKMLTTGDHFGM 158
Query: 120 REGKLFCRNDF 130
++ ++CR F
Sbjct: 159 KDSLVYCRLHF 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 71 LSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRN 128
+SS CAGC I D++ L +++ WH C++C +C L + CFS++G ++C+
Sbjct: 45 ISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKE 104
Query: 129 DFF 131
D++
Sbjct: 105 DYY 107
>sp|Q8VI36|PAXI_MOUSE Paxillin OS=Mus musculus GN=Pxn PE=1 SV=1
Length = 591
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFFRSPVRF 63
C C+KPI + ++ + +TWH + C C + S F R+G+ +C D+
Sbjct: 358 CGACKKPIAGQ-VVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDY------- 409
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREG 122
S C C PILDK ++ L+RTWH + C C + F ++G
Sbjct: 410 --------HSLFSPRCYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDG 460
Query: 123 KLFCRNDFF 131
K +CR D+F
Sbjct: 461 KAYCRKDYF 469
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
C C PILDK ++ L+RTWH + C C + F ++GK +CR D+F F
Sbjct: 417 CYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFD---MF 472
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREG 122
CG GC + IL+ + ++ L WH +C C +C + F +G
Sbjct: 473 APKCG------------GCARAILENY-ISALNTLWHPECFVCRECFTPFVNGSFFEHDG 519
Query: 123 KLFC 126
+ +C
Sbjct: 520 QPYC 523
>sp|Q8QFP8|LIMK1_CHICK LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1 SV=1
Length = 662
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
L CA C + I D L L WHADC RC +C +LS + + ++G+L+C+ D++
Sbjct: 23 LPVCASCGQGIFDGQYLQALNADWHADCFRCGECGASLSHQYYEKDGRLYCKKDYW---A 79
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK---CF 118
RF C GC + I ++ E+ +H +C C +C + D
Sbjct: 80 RFGE------------LCHGCAEQITKGLVMVAGEQKYHPECFSCLNCRAFIGDGDTYAL 127
Query: 119 SREGKLFC 126
KL+C
Sbjct: 128 VERSKLYC 135
>sp|P53405|ISL1_DANRE Insulin gene enhancer protein isl-1 OS=Danio rerio GN=isl1 PE=2
SV=1
Length = 349
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCNIGFSK--------------NDFVMRARSKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
>sp|P61374|ISL1_RAT Insulin gene enhancer protein ISL-1 OS=Rattus norvegicus GN=Isl1
PE=2 SV=1
Length = 349
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCSIGFSK--------------NDFVMRARSKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
>sp|P61372|ISL1_MOUSE Insulin gene enhancer protein ISL-1 OS=Mus musculus GN=Isl1 PE=1
SV=1
Length = 349
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCSIGFSK--------------NDFVMRARSKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
>sp|P61373|ISL1_MESAU Insulin gene enhancer protein ISL-1 OS=Mesocricetus auratus GN=ISL1
PE=2 SV=1
Length = 349
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCSIGFSK--------------NDFVMRARSKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
>sp|P61371|ISL1_HUMAN Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1
SV=1
Length = 349
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDK--CFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCSIGFSK--------------NDFVMRARSKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYI 72
>sp|P50211|ISL1_CHICK Insulin gene enhancer protein ISL-1 OS=Gallus gallus GN=ISL1 PE=2
SV=1
Length = 349
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 2 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSD--KCFSREGKLFCRNDFF 57
LIS C GC I D+++L V + WHA C++C +C+ L + CF R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYI 72
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL--SD 115
R + C +G S + F++ + +H +C RC C L D
Sbjct: 73 RLYGIKCAKCSIGFSK--------------NDFVMRARAKVYHIECFRCVACSRQLIPGD 118
Query: 116 KCFSREGKLFCRND 129
+ RE LFCR D
Sbjct: 119 EFALREDGLFCRAD 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 76 LIS-CAGCEKPILDKFLLNV-LERTWHADCVRCYDCHHTLSDKC--FSREGKLFCRNDFF 131
LIS C GC I D+++L V + WHA C++C +C+ L + C F R+GK +C+ D+
Sbjct: 13 LISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYI 72
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++ I D+FLL + + WH CV+C C L CF R+ KL+C+ + +
Sbjct: 35 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEK------ 88
Query: 65 SGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ C GC + I ++F++ + +H C C C L D+ +E
Sbjct: 89 ---------LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKE 139
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 140 GQLLCKGDY 148
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
PE=2 SV=1
Length = 382
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
C GC++ I D+FLL + + WH CV+C C L CF R+ KL+C+ + +
Sbjct: 35 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEK------ 88
Query: 65 SGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSRE 121
+ C GC + I ++F++ + +H C C C L D+ +E
Sbjct: 89 ---------LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKE 139
Query: 122 GKLFCRNDF 130
G+L C+ D+
Sbjct: 140 GQLLCKGDY 148
>sp|Q66H76|PAXI_RAT Paxillin OS=Rattus norvegicus GN=Pxn PE=1 SV=1
Length = 586
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFFRSPVRF 63
C C+KPI + ++ + +TWH + C C + S F R+G+ +C D+
Sbjct: 353 CGACKKPIAGQ-VVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDY------- 404
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREG 122
S C C PILDK ++ L+RTWH + C C + F ++G
Sbjct: 405 --------HSLFSPRCYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDG 455
Query: 123 KLFCRNDFF 131
K +CR D+F
Sbjct: 456 KAYCRKDYF 464
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
C C PILDK ++ L+RTWH + C C + F ++GK +CR D+F F
Sbjct: 412 CYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFD---MF 467
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREG 122
CG GC + IL+ + ++ L WH +C C +C + F +G
Sbjct: 468 APKCG------------GCARAILENY-ISALNTLWHPECFVCRECFTPFVNGSFFEHDG 514
Query: 123 KLFC 126
+ +C
Sbjct: 515 QPYC 518
>sp|Q5FVB2|LMO41_XENTR LIM domain transcription factor LMO4.1 OS=Xenopus tropicalis
GN=lmo4.1 PE=2 SV=1
Length = 167
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSP 60
+CAGC I D+FLL +ER WH C++C C L + C+++ G + CRND+ R
Sbjct: 23 ACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIR-- 80
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTL--SDKC 117
+ SG +C+ C + I + ++ +H C C C + L D+
Sbjct: 81 LFGSSG-----------ACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRF 129
Query: 118 FSREGKLFCRND 129
G +FC +D
Sbjct: 130 HYVNGAIFCEHD 141
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
+CAGC I D+FLL +ER WH C++C C L + C+++ G + CRND+
Sbjct: 23 ACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYI 79
>sp|P49023|PAXI_HUMAN Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3
Length = 591
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 23/131 (17%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFFR--SPV 61
C C+KPI + ++ + +TWH + C C + S F R+G+ +C D+ SP
Sbjct: 358 CGACKKPIAGQ-VVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSP- 415
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SR 120
C C PILDK ++ L+RTWH + C C + F +
Sbjct: 416 ----------------RCYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEK 458
Query: 121 EGKLFCRNDFF 131
+GK +CR D+F
Sbjct: 459 DGKAYCRKDYF 469
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
C C PILDK ++ L+RTWH + C C + F ++GK +CR D+F F
Sbjct: 417 CYYCNGPILDK-VVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFD---MF 472
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREG 122
CG GC + IL+ + ++ L WH +C C +C + F +G
Sbjct: 473 APKCG------------GCARAILENY-ISALNTLWHPECFVCRECFTPFVNGSFFEHDG 519
Query: 123 KLFC 126
+ +C
Sbjct: 520 QPYC 523
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREG-KLFCRNDFFR 58
C+GC+KPI + + + + +H + C C L+ F + K +C+N F +
Sbjct: 535 CSGCQKPITGR-CITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLK 588
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.144 0.517
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,995,898
Number of Sequences: 539616
Number of extensions: 1912470
Number of successful extensions: 6076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 5101
Number of HSP's gapped (non-prelim): 693
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)