Query psy4437
Match_columns 131
No_of_seqs 202 out of 1226
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 17:01:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 100.0 1.8E-34 6.2E-39 184.3 4.1 115 2-130 3-121 (126)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 3.3E-34 1.1E-38 184.2 3.9 116 1-130 1-123 (131)
3 1b8t_A Protein (CRP1); LIM dom 100.0 5E-34 1.7E-38 194.1 3.8 128 3-130 8-170 (192)
4 2jtn_A LIM domain-binding prot 100.0 4.2E-33 1.4E-37 188.2 5.4 115 2-130 60-177 (182)
5 2rgt_A Fusion of LIM/homeobox 100.0 3.8E-33 1.3E-37 186.4 2.6 115 2-130 6-123 (169)
6 1rut_X Flinc4, fusion protein 100.0 1.4E-32 4.8E-37 186.4 2.2 115 2-130 5-126 (188)
7 2cup_A Skeletal muscle LIM-pro 100.0 5E-29 1.7E-33 153.4 6.5 95 2-110 5-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 1.1E-25 3.6E-30 142.9 1.4 100 2-130 5-110 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 3.3E-23 1.1E-27 129.9 3.7 95 2-130 3-102 (114)
10 2ehe_A Four and A half LIM dom 99.8 2.3E-21 7.8E-26 114.8 6.6 71 47-131 1-72 (82)
11 2egq_A FHL1 protein; LIM domai 99.8 2.9E-21 1E-25 113.0 2.9 73 47-130 1-74 (77)
12 1iml_A CRIP, cysteine rich int 99.8 1.5E-20 5.3E-25 109.7 3.3 70 3-72 1-72 (76)
13 2cuq_A Four and A half LIM dom 99.8 1.4E-20 4.8E-25 110.8 3.1 68 47-130 1-69 (80)
14 1x63_A Skeletal muscle LIM-pro 99.8 1.6E-20 5.6E-25 111.0 3.4 70 47-130 1-71 (82)
15 1x3h_A Leupaxin; paxillin fami 99.8 2.1E-20 7.2E-25 110.1 3.0 68 47-130 1-69 (80)
16 1x68_A FHL5 protein; four-and- 99.8 1.3E-19 4.3E-24 105.8 5.4 67 2-68 5-75 (76)
17 2dj7_A Actin-binding LIM prote 99.8 4E-20 1.4E-24 109.0 3.2 65 2-66 15-79 (80)
18 1a7i_A QCRP2 (LIM1); LIM domai 99.8 1.7E-20 5.8E-25 110.8 1.4 70 2-71 7-77 (81)
19 2cu8_A Cysteine-rich protein 2 99.8 1.4E-19 4.8E-24 105.6 3.2 66 1-66 8-75 (76)
20 1x6a_A LIMK-2, LIM domain kina 99.8 2.2E-19 7.6E-24 105.9 3.5 68 47-130 1-71 (81)
21 2ehe_A Four and A half LIM dom 99.7 9.9E-19 3.4E-23 103.3 4.8 65 2-66 15-81 (82)
22 2dlo_A Thyroid receptor-intera 99.7 3.2E-19 1.1E-23 105.3 2.6 67 47-130 2-70 (81)
23 2d8z_A Four and A half LIM dom 99.7 5.8E-19 2E-23 101.3 2.8 64 2-66 5-69 (70)
24 1x4l_A Skeletal muscle LIM-pro 99.7 1E-18 3.4E-23 100.9 3.8 63 2-64 5-71 (72)
25 1wyh_A SLIM 2, skeletal muscle 99.7 5.3E-19 1.8E-23 102.0 2.3 65 2-66 5-71 (72)
26 1x4k_A Skeletal muscle LIM-pro 99.7 6.6E-19 2.3E-23 101.6 2.5 65 2-66 5-71 (72)
27 2cur_A Skeletal muscle LIM-pro 99.7 4.8E-19 1.7E-23 101.4 1.8 64 2-66 5-69 (69)
28 2dar_A PDZ and LIM domain prot 99.7 1.9E-18 6.5E-23 103.9 3.2 64 2-66 25-89 (90)
29 2cor_A Pinch protein; LIM doma 99.7 2.6E-18 8.9E-23 100.9 3.4 63 2-65 15-77 (79)
30 2dlo_A Thyroid receptor-intera 99.7 2.4E-18 8.3E-23 101.4 2.7 64 2-66 15-80 (81)
31 1x3h_A Leupaxin; paxillin fami 99.7 1.9E-18 6.5E-23 101.6 2.2 64 2-66 15-79 (80)
32 1nyp_A Pinch protein; LIM doma 99.7 1.4E-18 4.9E-23 98.6 1.4 61 2-63 5-66 (66)
33 1g47_A Pinch protein; LIM doma 99.7 1.7E-18 5.9E-23 101.1 1.5 64 2-65 11-76 (77)
34 2d8y_A Eplin protein; LIM doma 99.7 4.3E-18 1.5E-22 102.5 3.3 64 2-65 15-79 (91)
35 2co8_A NEDD9 interacting prote 99.7 1.9E-17 6.6E-22 97.8 5.0 63 2-64 15-80 (82)
36 1v6g_A Actin binding LIM prote 99.7 3.6E-18 1.2E-22 100.7 1.8 67 48-130 2-70 (81)
37 2cuq_A Four and A half LIM dom 99.7 5.1E-18 1.8E-22 99.8 2.4 64 2-66 15-79 (80)
38 1x64_A Alpha-actinin-2 associa 99.7 7E-18 2.4E-22 101.2 2.8 63 2-65 25-88 (89)
39 2dj7_A Actin-binding LIM prote 99.7 1.7E-17 5.8E-22 97.6 4.0 58 73-130 12-69 (80)
40 2d8x_A Protein pinch; LIM doma 99.7 1E-17 3.4E-22 96.1 2.4 61 2-63 5-66 (70)
41 1x62_A C-terminal LIM domain p 99.7 3.2E-18 1.1E-22 100.5 0.2 63 2-65 15-78 (79)
42 1b8t_A Protein (CRP1); LIM dom 99.7 1.5E-17 5.1E-22 112.8 2.5 69 3-71 116-185 (192)
43 1wig_A KIAA1808 protein; LIM d 99.7 5.2E-17 1.8E-21 93.9 4.0 60 2-62 5-66 (73)
44 2co8_A NEDD9 interacting prote 99.7 9.7E-17 3.3E-21 94.8 5.1 58 74-131 13-73 (82)
45 1x63_A Skeletal muscle LIM-pro 99.7 2.6E-17 8.9E-22 97.2 2.5 64 2-65 15-80 (82)
46 2l4z_A DNA endonuclease RBBP8, 99.6 3.2E-17 1.1E-21 103.8 1.8 59 3-61 62-123 (123)
47 1x61_A Thyroid receptor intera 99.6 2.8E-17 9.6E-22 94.7 1.4 60 2-61 5-66 (72)
48 1x68_A FHL5 protein; four-and- 99.6 2.5E-16 8.7E-21 91.6 5.1 55 77-131 6-64 (76)
49 2l4z_A DNA endonuclease RBBP8, 99.6 3.9E-16 1.3E-20 98.8 5.6 56 75-130 60-118 (123)
50 3f6q_B LIM and senescent cell 99.6 5.6E-17 1.9E-21 93.3 1.6 60 2-61 11-72 (72)
51 2iyb_E Testin, TESS, TES; LIM 99.6 1.1E-16 3.6E-21 90.6 2.5 58 2-59 2-64 (65)
52 1wig_A KIAA1808 protein; LIM d 99.6 1.9E-16 6.6E-21 91.5 3.2 53 77-130 6-60 (73)
53 2d8x_A Protein pinch; LIM doma 99.6 1.2E-16 4.3E-21 91.5 2.4 54 76-130 5-59 (70)
54 1x6a_A LIMK-2, LIM domain kina 99.6 8.7E-17 3E-21 94.7 1.7 64 2-66 15-81 (81)
55 2egq_A FHL1 protein; LIM domai 99.6 1.4E-16 4.7E-21 92.9 2.4 57 2-58 15-76 (77)
56 2cu8_A Cysteine-rich protein 2 99.6 3.9E-16 1.3E-20 90.8 3.8 54 77-130 10-65 (76)
57 1x4l_A Skeletal muscle LIM-pro 99.6 1.8E-16 6.3E-21 91.3 2.2 54 77-130 6-63 (72)
58 1nyp_A Pinch protein; LIM doma 99.6 1.2E-16 4E-21 90.6 1.2 53 77-130 6-59 (66)
59 1x4k_A Skeletal muscle LIM-pro 99.6 2.1E-16 7.1E-21 91.0 2.2 54 77-130 6-61 (72)
60 1iml_A CRIP, cysteine rich int 99.6 3.9E-16 1.3E-20 90.8 3.0 53 78-130 2-56 (76)
61 2cur_A Skeletal muscle LIM-pro 99.6 2.7E-16 9.1E-21 89.9 2.1 53 77-130 6-59 (69)
62 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.4E-16 8.3E-21 92.8 1.9 55 76-130 7-62 (81)
63 1wyh_A SLIM 2, skeletal muscle 99.6 3.8E-16 1.3E-20 89.9 2.4 54 77-130 6-61 (72)
64 2cor_A Pinch protein; LIM doma 99.6 5.4E-16 1.8E-20 91.0 2.9 54 76-130 15-68 (79)
65 3f6q_B LIM and senescent cell 99.6 3.6E-16 1.2E-20 89.8 2.1 54 77-130 12-67 (72)
66 2d8z_A Four and A half LIM dom 99.6 3.9E-16 1.3E-20 89.4 2.1 53 77-130 6-59 (70)
67 1x61_A Thyroid receptor intera 99.6 5.7E-16 2E-20 89.2 2.7 54 77-130 6-61 (72)
68 2l3k_A Rhombotin-2, linker, LI 99.6 2.6E-16 9E-21 99.6 1.2 71 4-74 10-83 (123)
69 1x62_A C-terminal LIM domain p 99.6 3.1E-16 1.1E-20 91.9 1.0 55 75-130 14-69 (79)
70 1g47_A Pinch protein; LIM doma 99.6 8.5E-16 2.9E-20 89.5 2.5 54 77-130 12-67 (77)
71 2d8y_A Eplin protein; LIM doma 99.6 7.3E-16 2.5E-20 92.7 2.2 55 76-130 15-70 (91)
72 2dar_A PDZ and LIM domain prot 99.6 7.8E-16 2.7E-20 92.3 2.3 53 77-130 26-79 (90)
73 1j2o_A FLIN2, fusion of rhombo 99.6 7.5E-16 2.6E-20 96.3 2.1 55 76-130 3-60 (114)
74 2iyb_E Testin, TESS, TES; LIM 99.6 5.8E-16 2E-20 87.5 1.3 54 77-130 3-61 (65)
75 1x64_A Alpha-actinin-2 associa 99.6 1.1E-15 3.9E-20 91.4 2.5 54 76-130 25-79 (89)
76 2l3k_A Rhombotin-2, linker, LI 99.5 5E-15 1.7E-19 93.7 4.2 61 56-130 1-65 (123)
77 2xqn_T Testin, TESS; metal-bin 99.5 2.8E-15 9.7E-20 95.1 2.0 54 77-130 4-58 (126)
78 2cup_A Skeletal muscle LIM-pro 99.5 4.5E-15 1.5E-19 90.7 2.5 54 77-130 6-61 (101)
79 1m3v_A FLIN4, fusion of the LI 99.5 2.1E-15 7.2E-20 95.3 1.0 54 77-130 6-62 (122)
80 2xjy_A Rhombotin-2; oncoprotei 99.5 9E-15 3.1E-19 93.3 2.3 54 77-130 3-59 (131)
81 2jtn_A LIM domain-binding prot 99.5 2.2E-14 7.5E-19 96.4 3.5 55 76-130 60-114 (182)
82 1rut_X Flinc4, fusion protein 99.5 6.6E-14 2.3E-18 94.5 5.1 97 4-106 71-170 (188)
83 1v6g_A Actin binding LIM prote 99.4 3.3E-14 1.1E-18 83.5 2.7 59 2-61 15-75 (81)
84 2rgt_A Fusion of LIM/homeobox 99.4 2.2E-14 7.6E-19 95.3 1.8 55 76-130 6-60 (169)
85 1zfo_A LAsp-1; LIM domain, zin 98.7 5E-09 1.7E-13 50.1 1.3 30 1-30 2-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.4 1.3E-07 4.4E-12 45.1 2.1 28 77-104 4-31 (31)
87 2ysm_A Myeloid/lymphoid or mix 90.5 0.63 2.2E-05 27.9 5.0 68 3-84 8-77 (111)
88 2kwj_A Zinc finger protein DPF 89.8 0.14 4.6E-06 31.2 1.6 71 3-84 2-81 (114)
89 4ap4_A E3 ubiquitin ligase RNF 87.0 0.1 3.5E-06 31.9 -0.3 23 94-116 96-126 (133)
90 2e6s_A E3 ubiquitin-protein li 85.0 1.5 5E-05 24.7 3.9 47 46-105 7-57 (77)
91 1bor_A Transcription factor PM 82.5 2.8 9.6E-05 21.5 4.2 40 30-70 7-46 (56)
92 1jm7_B BARD1, BRCA1-associated 80.4 2.7 9.3E-05 25.1 4.2 43 30-72 23-66 (117)
93 2ct0_A Non-SMC element 1 homol 77.9 1.4 4.8E-05 24.6 2.1 37 78-114 17-63 (74)
94 2jrp_A Putative cytoplasmic pr 76.4 1.8 6.1E-05 24.7 2.2 13 104-116 52-64 (81)
95 2ecm_A Ring finger and CHY zin 72.4 3.3 0.00011 20.8 2.6 20 95-114 27-54 (55)
96 2ecy_A TNF receptor-associated 71.9 0.91 3.1E-05 24.2 0.3 31 29-59 15-45 (66)
97 3nw0_A Non-structural maintena 70.6 2.5 8.6E-05 29.0 2.3 40 77-116 181-230 (238)
98 1jjd_A Metallothionein, SMTA; 70.4 2.2 7.6E-05 22.4 1.5 22 105-126 9-31 (55)
99 3ng2_A RNF4, snurf, ring finge 70.0 1.8 6.2E-05 23.1 1.3 41 76-116 10-64 (71)
100 3nw0_A Non-structural maintena 69.4 2 6.8E-05 29.5 1.6 14 2-15 180-193 (238)
101 2ect_A Ring finger protein 126 69.0 7.5 0.00026 21.1 3.8 45 30-74 16-65 (78)
102 1twf_L ABC10-alpha, DNA-direct 68.8 3.5 0.00012 22.8 2.2 26 63-88 30-57 (70)
103 2ysl_A Tripartite motif-contai 68.4 1.9 6.6E-05 23.2 1.1 31 29-59 20-50 (73)
104 2egp_A Tripartite motif-contai 68.4 3.5 0.00012 22.4 2.3 53 30-88 13-65 (79)
105 2cs3_A Protein C14ORF4, MY039 68.3 3.7 0.00013 23.4 2.3 35 74-108 13-47 (93)
106 1chc_A Equine herpes virus-1 r 67.6 3.2 0.00011 21.9 1.9 39 78-116 7-53 (68)
107 2xeu_A Ring finger protein 4; 65.7 2.2 7.5E-05 22.2 1.0 39 78-116 5-57 (64)
108 1v9x_A Poly (ADP-ribose) polym 64.1 2.3 7.8E-05 25.9 0.9 21 56-76 15-35 (114)
109 2djb_A Polycomb group ring fin 64.0 3.5 0.00012 22.2 1.7 40 77-116 16-63 (72)
110 2ecv_A Tripartite motif-contai 62.9 3.6 0.00012 22.6 1.6 29 30-58 20-48 (85)
111 3l11_A E3 ubiquitin-protein li 61.4 5.7 0.00019 23.5 2.4 31 30-60 16-46 (115)
112 2d8t_A Dactylidin, ring finger 60.5 2.4 8.1E-05 22.8 0.5 30 29-58 15-44 (71)
113 2dmj_A Poly (ADP-ribose) polym 59.5 1.8 6.2E-05 25.9 -0.1 21 56-76 20-40 (106)
114 2ecn_A Ring finger protein 141 58.9 3.2 0.00011 22.1 0.9 38 77-116 16-61 (70)
115 1t1h_A Gspef-atpub14, armadill 58.4 2.9 9.9E-05 22.9 0.6 31 28-58 7-37 (78)
116 2ea6_A Ring finger protein 4; 58.3 4 0.00014 21.5 1.2 39 77-115 16-68 (69)
117 3od8_A Poly [ADP-ribose] polym 57.9 1.9 6.6E-05 26.3 -0.2 21 56-76 33-53 (116)
118 1x4j_A Ring finger protein 38; 57.2 4.7 0.00016 21.8 1.4 47 28-74 22-73 (75)
119 2ep4_A Ring finger protein 24; 56.8 5.1 0.00017 21.5 1.5 44 30-73 16-64 (74)
120 2kiz_A E3 ubiquitin-protein li 56.3 5.8 0.0002 21.0 1.7 26 48-73 36-63 (69)
121 2gvi_A Conserved hypothetical 56.0 2 6.7E-05 28.8 -0.4 30 29-58 172-202 (204)
122 2jne_A Hypothetical protein YF 54.7 4.8 0.00016 23.7 1.2 27 26-57 30-56 (101)
123 4ic3_A E3 ubiquitin-protein li 54.3 6.9 0.00023 21.3 1.8 30 30-59 25-55 (74)
124 2e5r_A Dystrobrevin alpha; ZZ 53.5 6.8 0.00023 21.0 1.6 37 20-58 4-44 (63)
125 4ayc_A E3 ubiquitin-protein li 53.4 3.8 0.00013 25.3 0.6 28 30-57 54-81 (138)
126 4gne_A Histone-lysine N-methyl 52.7 34 0.0012 20.3 5.5 11 119-129 92-102 (107)
127 3v43_A Histone acetyltransfera 51.3 33 0.0011 20.3 4.6 71 3-84 6-85 (112)
128 1jm7_A BRCA1, breast cancer ty 51.3 4.5 0.00015 23.7 0.7 28 30-57 22-49 (112)
129 1iym_A EL5; ring-H2 finger, ub 49.8 11 0.00037 18.7 2.0 11 4-14 7-17 (55)
130 2ecl_A Ring-box protein 2; RNF 49.7 4.7 0.00016 22.4 0.6 9 4-12 17-25 (81)
131 1uw0_A DNA ligase III; DNA rep 49.7 3.3 0.00011 25.2 -0.1 9 97-105 49-57 (117)
132 2ecg_A Baculoviral IAP repeat- 49.0 7.6 0.00026 21.1 1.4 28 30-57 26-54 (75)
133 2con_A RUH-035 protein, NIN on 48.9 11 0.00038 21.2 2.0 27 62-88 16-42 (79)
134 2ecw_A Tripartite motif-contai 48.6 9.4 0.00032 20.8 1.8 29 30-58 20-48 (85)
135 2lo3_A SAGA-associated factor 46.9 4.7 0.00016 19.9 0.2 13 3-15 18-30 (44)
136 2y43_A E3 ubiquitin-protein li 46.7 7.4 0.00025 22.3 1.1 39 77-115 23-69 (99)
137 2i5o_A DNA polymerase ETA; zin 46.4 6 0.0002 19.2 0.6 18 71-88 4-21 (39)
138 2vpb_A Hpygo1, pygopus homolog 45.9 6.6 0.00023 21.1 0.8 27 3-29 9-39 (65)
139 2csy_A Zinc finger protein 183 45.5 9 0.00031 21.0 1.3 37 77-114 16-60 (81)
140 2yur_A Retinoblastoma-binding 45.4 8.2 0.00028 20.8 1.1 31 29-59 15-46 (74)
141 3vk6_A E3 ubiquitin-protein li 43.5 12 0.0004 22.2 1.6 23 76-99 37-59 (101)
142 3odc_A Poly [ADP-ribose] polym 42.6 5 0.00017 24.2 -0.1 19 58-76 16-34 (111)
143 3hcs_A TNF receptor-associated 41.9 5.3 0.00018 25.4 -0.0 45 30-74 19-66 (170)
144 1twf_J DNA-directed RNA polyme 40.2 13 0.00043 20.5 1.3 13 2-14 4-16 (70)
145 2eqg_A Tumor necrosis factor, 39.7 2.4 8.1E-05 21.1 -1.5 14 117-130 22-35 (49)
146 1ef4_A Subunit N, DNA-directed 39.5 13 0.00043 19.5 1.2 12 2-13 3-14 (55)
147 2csz_A Synaptotagmin-like prot 39.4 9.4 0.00032 21.4 0.7 11 30-40 26-36 (76)
148 3fl2_A E3 ubiquitin-protein li 39.2 13 0.00043 22.3 1.4 37 78-115 54-99 (124)
149 2l0b_A E3 ubiquitin-protein li 38.8 10 0.00035 21.4 0.9 44 30-73 41-89 (91)
150 1rmd_A RAG1; V(D)J recombinati 38.2 6.5 0.00022 23.3 -0.1 44 30-73 24-70 (116)
151 2ckl_A Polycomb group ring fin 38.0 16 0.00053 21.2 1.6 39 77-115 16-62 (108)
152 2ecj_A Tripartite motif-contai 37.2 11 0.00037 18.9 0.7 29 30-58 16-44 (58)
153 3h0g_L DNA-directed RNA polyme 36.7 33 0.0011 18.4 2.6 15 75-89 37-51 (63)
154 2d8v_A Zinc finger FYVE domain 36.5 13 0.00045 20.2 1.0 27 32-58 11-37 (67)
155 3hct_A TNF receptor-associated 35.5 16 0.00054 21.7 1.4 39 77-116 19-66 (118)
156 2kre_A Ubiquitin conjugation f 35.0 15 0.00053 21.3 1.2 31 27-57 27-57 (100)
157 2ea5_A Cell growth regulator w 34.8 26 0.00087 18.7 2.1 28 30-57 16-44 (68)
158 1e4u_A Transcriptional repress 34.5 19 0.00064 19.9 1.5 30 30-59 12-45 (78)
159 2das_A Zinc finger MYM-type pr 34.2 26 0.00088 18.6 1.9 11 106-116 23-33 (62)
160 3ztg_A E3 ubiquitin-protein li 33.9 5.1 0.00018 22.6 -1.0 30 29-58 13-43 (92)
161 2lbz_A Thuricin17, thurincin H 33.8 14 0.00048 16.2 0.7 14 28-41 6-19 (31)
162 2ct2_A Tripartite motif protei 33.7 29 0.001 18.9 2.3 21 95-115 37-68 (88)
163 1kbe_A Kinase suppressor of RA 33.2 23 0.00079 17.8 1.6 10 30-39 15-24 (49)
164 3asl_A E3 ubiquitin-protein li 33.1 20 0.00068 19.5 1.4 11 27-38 17-27 (70)
165 3ask_A E3 ubiquitin-protein li 33.0 71 0.0024 21.7 4.4 46 47-105 156-205 (226)
166 1z6u_A NP95-like ring finger p 31.7 20 0.00068 22.4 1.5 39 77-116 79-126 (150)
167 1znf_A 31ST zinc finger from X 31.4 24 0.00083 13.6 1.3 12 30-41 2-13 (27)
168 1g25_A CDK-activating kinase a 31.4 8.9 0.00031 20.0 -0.2 12 47-58 26-37 (65)
169 1ard_A Yeast transcription fac 30.8 19 0.00065 14.2 0.9 13 104-116 3-15 (29)
170 1weo_A Cellulose synthase, cat 30.3 49 0.0017 19.1 2.8 27 60-86 15-45 (93)
171 2yho_A E3 ubiquitin-protein li 30.1 27 0.00092 19.2 1.7 29 31-59 20-49 (79)
172 3lrq_A E3 ubiquitin-protein li 29.4 24 0.00084 20.2 1.5 39 78-116 24-71 (100)
173 1k81_A EIF-2-beta, probable tr 29.2 27 0.00092 16.3 1.3 26 78-106 2-27 (36)
174 1wgm_A Ubiquitin conjugation f 29.1 22 0.00077 20.5 1.3 32 27-58 20-52 (98)
175 1paa_A Yeast transcription fac 28.9 22 0.00077 14.2 1.0 13 104-116 3-15 (30)
176 2e6r_A Jumonji/ARID domain-con 28.8 30 0.001 19.8 1.8 6 77-82 32-37 (92)
177 4ayb_N DNA-directed RNA polyme 28.7 23 0.0008 19.2 1.2 13 2-14 4-16 (66)
178 3d00_A Tungsten formylmethanof 28.3 8.4 0.00029 25.5 -0.8 27 28-59 162-188 (191)
179 2puy_A PHD finger protein 21A; 28.0 61 0.0021 16.6 2.8 6 99-104 27-32 (60)
180 1wil_A KIAA1045 protein; ring 28.0 28 0.00094 20.0 1.4 10 96-105 36-45 (89)
181 2ckl_B Ubiquitin ligase protei 27.5 25 0.00084 22.1 1.4 39 77-115 55-102 (165)
182 2kvh_A Zinc finger and BTB dom 27.4 17 0.00057 14.3 0.4 12 104-115 4-15 (27)
183 2cs2_A Poly [ADP-ribose] polym 27.0 16 0.00053 22.8 0.3 21 56-76 22-42 (134)
184 4av1_A Poly [ADP-ribose] polym 26.7 13 0.00043 25.3 -0.1 21 56-76 34-54 (223)
185 2m0e_A Zinc finger and BTB dom 26.6 25 0.00086 13.7 0.9 13 104-116 3-15 (29)
186 3shb_A E3 ubiquitin-protein li 26.5 36 0.0012 18.8 1.8 13 26-39 24-36 (77)
187 3h4n_A Cytochrome C7, cytochro 26.5 3.3 0.00011 22.8 -2.6 17 24-40 19-36 (72)
188 2yt5_A Metal-response element- 26.1 46 0.0016 17.4 2.2 8 4-11 8-15 (66)
189 4ayb_P DNA-directed RNA polyme 25.8 67 0.0023 16.1 2.5 10 77-86 24-33 (48)
190 2lvu_A Zinc finger and BTB dom 31.7 14 0.00049 14.4 0.0 13 104-116 3-15 (26)
191 1klr_A Zinc finger Y-chromosom 25.8 27 0.00091 13.7 1.0 13 104-116 3-15 (30)
192 1faq_A RAF-1; transferase, ser 25.6 29 0.00098 17.2 1.2 7 5-11 17-23 (52)
193 2kr4_A Ubiquitin conjugation f 25.6 16 0.00054 20.4 0.2 38 77-115 15-60 (85)
194 3na7_A HP0958; flagellar bioge 25.0 32 0.0011 23.6 1.6 11 77-87 223-233 (256)
195 2jny_A Uncharacterized BCR; st 24.6 52 0.0018 17.7 2.1 12 76-87 10-21 (67)
196 1wfp_A Zinc finger (AN1-like) 24.3 63 0.0022 17.9 2.4 10 77-86 26-35 (74)
197 2kvf_A Zinc finger and BTB dom 24.3 21 0.00071 14.1 0.4 13 104-116 4-16 (28)
198 2d8s_A Cellular modulator of i 24.1 59 0.002 17.9 2.4 11 3-13 16-26 (80)
199 1rik_A E6APC1 peptide; E6-bind 24.1 22 0.00075 14.0 0.5 13 104-116 3-15 (29)
200 1pft_A TFIIB, PFTFIIBN; N-term 24.0 51 0.0017 16.2 2.0 13 104-116 25-37 (50)
201 2xb1_A Pygopus homolog 2, B-ce 24.0 46 0.0016 19.5 2.0 50 3-59 4-62 (105)
202 2m0f_A Zinc finger and BTB dom 23.8 21 0.00072 14.0 0.4 13 104-116 3-15 (29)
203 2hf1_A Tetraacyldisaccharide-1 23.6 55 0.0019 17.7 2.1 11 77-87 9-19 (68)
204 2lcq_A Putative toxin VAPC6; P 23.3 32 0.0011 21.7 1.3 26 61-86 132-158 (165)
205 1vq8_U 50S ribosomal protein L 23.0 48 0.0016 17.9 1.8 11 78-88 5-15 (66)
206 3t6p_A Baculoviral IAP repeat- 22.8 58 0.002 23.5 2.7 30 30-59 296-326 (345)
207 2jr6_A UPF0434 protein NMA0874 22.7 60 0.002 17.5 2.1 12 76-87 8-19 (68)
208 2js4_A UPF0434 protein BB2007; 22.4 56 0.0019 17.8 2.0 12 76-87 8-19 (70)
209 2dkt_A Ring finger and CHY zin 22.3 56 0.0019 20.5 2.2 51 31-84 38-91 (143)
210 3c6w_A P28ING5, inhibitor of g 22.2 39 0.0013 17.6 1.3 9 97-105 33-41 (59)
211 1f62_A Transcription factor WS 22.2 63 0.0021 15.8 2.1 20 64-83 3-22 (51)
212 2m0d_A Zinc finger and BTB dom 22.0 24 0.00082 13.9 0.4 13 104-116 4-16 (30)
213 3j21_V 50S ribosomal protein L 21.8 52 0.0018 17.8 1.8 12 77-88 5-16 (66)
214 2fc7_A ZZZ3 protein; structure 21.7 46 0.0016 18.6 1.6 36 22-58 15-57 (82)
215 1p7a_A BF3, BKLF, kruppel-like 21.7 34 0.0012 14.6 0.9 13 104-116 12-24 (37)
216 2lri_C Autoimmune regulator; Z 21.7 36 0.0012 18.2 1.1 7 76-82 24-30 (66)
217 2kvg_A Zinc finger and BTB dom 21.5 21 0.00071 14.1 0.1 12 104-115 4-15 (27)
218 2lvr_A Zinc finger and BTB dom 26.7 20 0.00069 14.3 0.0 13 104-116 4-16 (30)
219 2elr_A Zinc finger protein 406 20.8 37 0.0013 14.3 0.9 13 104-116 10-22 (36)
220 2yu4_A E3 SUMO-protein ligase 20.4 24 0.00081 20.0 0.2 27 77-104 8-35 (94)
221 1rim_A E6APC2 peptide; E6-bind 20.3 38 0.0013 14.2 0.9 13 104-116 3-15 (33)
222 2ctu_A Zinc finger protein 483 20.3 36 0.0012 17.2 0.9 34 77-116 19-52 (73)
223 1wfh_A Zinc finger (AN1-like) 20.2 86 0.0029 16.8 2.4 10 77-86 16-25 (64)
224 2lvt_A Zinc finger and BTB dom 25.4 22 0.00075 14.1 0.0 13 104-116 3-15 (29)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=184.35 Aligned_cols=115 Identities=22% Similarity=0.576 Sum_probs=102.3
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCccccCCCCccccc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCA 80 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~ 80 (131)
.++|++|+++|.+++++.++|+.||++||+|+.|+++|.++.| .++|++||+.||.++++++|.+|+++|.+.+.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~---- 78 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQ---- 78 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSC----
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCce----
Confidence 5789999999998878999999999999999999999998766 89999999999999999887777777765433
Q ss_pred cCCcccccceeeeecCCccc--ccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 81 GCEKPILDKFLLNVLERTWH--ADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 81 ~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
+++++++.|| ++||+|..|+++|++. |++.+|++||..+|
T Consensus 79 ----------~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~ 121 (126)
T 2xqn_T 79 ----------RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121 (126)
T ss_dssp ----------EEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHH
T ss_pred ----------EEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHh
Confidence 2389999999 9999999999999977 88899999998654
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=3.3e-34 Score=184.19 Aligned_cols=116 Identities=23% Similarity=0.709 Sum_probs=99.2
Q ss_pred CCCccccCCccccCceeEeecCCccccCCcccCCCcCcCCC--Ccc-CcCCeeecccCcCCCCCC--CCCCCccccCCCC
Q psy4437 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD--KCF-SREGKLFCRNDFFRSPVR--FPSGCGVGLSSSM 75 (131)
Q Consensus 1 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~f-~~~~~~~C~~c~~~~~~~--~C~~c~~~i~~~~ 75 (131)
++++|++|+++|.+++++.++|+.||++||+|+.|+.+|.+ ..| .++|++||+.||.+++++ +|.+|+++|.+.+
T Consensus 1 s~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred CcccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 36789999999999888999999999999999999999963 444 899999999999999887 5666665554432
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccc-cc-eeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS-DK-CFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~-~~~~~g~~~C~~cy 130 (131)
.+++++++.||++||+|..|+++|+ +. |++.+|++||..||
T Consensus 81 --------------~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~ 123 (131)
T 2xjy_A 81 --------------MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123 (131)
T ss_dssp --------------EEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGH
T ss_pred --------------eeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHH
Confidence 2348999999999999999999995 44 88999999999986
No 3
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=5e-34 Score=194.11 Aligned_cols=128 Identities=18% Similarity=0.514 Sum_probs=113.1
Q ss_pred CccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCccccCC--------
Q psy4437 3 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGLSS-------- 73 (131)
Q Consensus 3 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i~~-------- 73 (131)
++|.+|+++|.+++.+.++|+.||++||+|+.|+++|.+..| .++|++||+.||.++++++|.+|+++...
T Consensus 8 ~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~ 87 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGES 87 (192)
T ss_dssp EECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCC
T ss_pred CcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcc
Confidence 579999999987777889999999999999999999999766 89999999999999999999988754210
Q ss_pred -------------------------CCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecC
Q psy4437 74 -------------------------SMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCR 127 (131)
Q Consensus 74 -------------------------~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~ 127 (131)
+...+|..|+++|.+.+.+.++++.||++||+|+.|+++|.++ |++++|++||+
T Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~ 167 (192)
T 1b8t_A 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCK 167 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEH
T ss_pred cccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCH
Confidence 1134699999999987777999999999999999999999877 89999999999
Q ss_pred CCC
Q psy4437 128 NDF 130 (131)
Q Consensus 128 ~cy 130 (131)
.||
T Consensus 168 ~cy 170 (192)
T 1b8t_A 168 GCY 170 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 4
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.97 E-value=4.2e-33 Score=188.15 Aligned_cols=115 Identities=32% Similarity=0.918 Sum_probs=102.7
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccccCCCCcccccc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAG 81 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~ 81 (131)
.++|.+|+++|.+++++.++|+.||++||+|+.|+++|.+..|.++|++||+.||.++++++|.+|+++|.+.+..+
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~--- 136 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR--- 136 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC---
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEE---
Confidence 46899999999998888999999999999999999999998889999999999999999998888888887654432
Q ss_pred CCcccccceeeeecCCcccccCccccccccccccc--ee-ccCCeeecCCCC
Q psy4437 82 CEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CF-SREGKLFCRNDF 130 (131)
Q Consensus 82 C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~--~~-~~~g~~~C~~cy 130 (131)
.+.++.||++||+|..|+++|..+ |+ ..+|++||..||
T Consensus 137 -----------~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy 177 (182)
T 2jtn_A 137 -----------RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177 (182)
T ss_dssp -----------EETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred -----------ecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHH
Confidence 799999999999999999999854 65 568999998876
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.97 E-value=3.8e-33 Score=186.37 Aligned_cols=115 Identities=32% Similarity=0.912 Sum_probs=100.8
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccccCCCCcccccc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAG 81 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~ 81 (131)
.++|.+|+++|.+++++.++|+.||++||+|+.|+++|.+..|+++|++||+.||.++++++|.+|+++|.+.+..
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v---- 81 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVV---- 81 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEE----
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEE----
Confidence 4689999999999888899999999999999999999999888999999999999999998888877777654432
Q ss_pred CCcccccceeeeecCCcccccCccccccccccccc--ee-ccCCeeecCCCC
Q psy4437 82 CEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CF-SREGKLFCRNDF 130 (131)
Q Consensus 82 C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~--~~-~~~g~~~C~~cy 130 (131)
+.++++.||++||+|..|+++|..+ |+ ..||++||..||
T Consensus 82 ----------~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~ 123 (169)
T 2rgt_A 82 ----------RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123 (169)
T ss_dssp ----------EEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHH
T ss_pred ----------EEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHH
Confidence 3899999999999999999999744 65 568999998876
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=1.4e-32 Score=186.41 Aligned_cols=115 Identities=31% Similarity=0.771 Sum_probs=98.2
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCC---CccCcCCeeecccCcCCCCCC--CCCCCccccCCCCc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSPVR--FPSGCGVGLSSSML 76 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~f~~~~~~~C~~c~~~~~~~--~C~~c~~~i~~~~~ 76 (131)
.++|++|+++|.+++++.++++.||++||+|+.|+++|.+ .+|.++|++||+.||.+++++ +|.+|+++|.+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e- 83 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE- 83 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS-
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc-
Confidence 4689999999999888999999999999999999999985 345899999999999999886 4555555554332
Q ss_pred cccccCCcccccceeeeecCCcccccCcccccccccccc-c-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD-K-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~-~~~~~g~~~C~~cy 130 (131)
.++.++++.||++||+|..|+++|.. . |++.++++||..||
T Consensus 84 -------------~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~ 126 (188)
T 1rut_X 84 -------------LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126 (188)
T ss_dssp -------------EEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGC
T ss_pred -------------EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHH
Confidence 23489999999999999999999964 3 88999999999998
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.95 E-value=5e-29 Score=153.38 Aligned_cols=95 Identities=26% Similarity=0.563 Sum_probs=83.5
Q ss_pred CCccccCCcccc-CceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCccccCCCCcccc
Q psy4437 2 LISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISC 79 (131)
Q Consensus 2 ~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C 79 (131)
.++|.+|+++|. +++++.++|+.||++||+|+.|+++|.+..| .++|++||+.||.++++++|.+|+++|.+++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~-- 82 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN-- 82 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE--
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE--
Confidence 468999999996 4778999999999999999999999988766 899999999999999998888877777654332
Q ss_pred ccCCcccccceeeeecCCcccccCccccccc
Q psy4437 80 AGCEKPILDKFLLNVLERTWHADCVRCYDCH 110 (131)
Q Consensus 80 ~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~ 110 (131)
++++++.||++||+|+.|+
T Consensus 83 ------------~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 83 ------------VEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ------------EESSSCEEETTTCCCTTCC
T ss_pred ------------EEeCCcchHHhCCCCCCCC
Confidence 3899999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=1.1e-25 Score=142.92 Aligned_cols=100 Identities=29% Similarity=0.576 Sum_probs=82.6
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCC---CccCcCCeeecccCcCCCCCC--CCCCCccccCCCCc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSPVR--FPSGCGVGLSSSML 76 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~f~~~~~~~C~~c~~~~~~~--~C~~c~~~i~~~~~ 76 (131)
.++|++|+++|.+++++.++++.||++||+|+.|+++|.+ .+|.++|++||+.||.++|++ +|.+|+++|.+..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 5789999999999887899999999999999999999972 345899999999999999988 77777666655332
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
++.++ .+|.+. |++++++|||..||
T Consensus 85 ----------------~~~g~-------------~~l~g~~f~~~~~~~yC~~~~ 110 (122)
T 1m3v_A 85 ----------------MVVGE-------------PTLMGGEFGDEDERLITRLEN 110 (122)
T ss_dssp ----------------SSSSS-------------SSCCSCTTCCTTCCCCEECTT
T ss_pred ----------------EEcCC-------------cCCCCCccEecCCEeEccCcc
Confidence 44442 246555 99999999999987
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=3.3e-23 Score=129.92 Aligned_cols=95 Identities=24% Similarity=0.558 Sum_probs=78.2
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCC---CccCcCCeeecccCcCCCCCCCCCCCccccCCCCccc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLIS 78 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~ 78 (131)
+++|++|+++|.+++++.++++.||++||+|+.|+++|.+ .+|.++|+|||+.||.++|+++|..|... ..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~----~~-- 76 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGG----DV-- 76 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSC----SC--
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCC----ce--
Confidence 5789999999999988999999999999999999999974 44599999999999999999998887521 11
Q ss_pred cccCCcccccceeeeecCCcccccCccccccccc-cccc-eeccCCeeecCCCC
Q psy4437 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHT-LSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 79 C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~-l~~~-~~~~~g~~~C~~cy 130 (131)
| . |+.+ |.+. |++++++|||..||
T Consensus 77 -------~------~---------------~~~~~~~g~~f~~~~~~~~C~~~~ 102 (114)
T 1j2o_A 77 -------M------V---------------VGEPTLMGGEFGDEDERLITRLEN 102 (114)
T ss_dssp -------C------C---------------SSCSSTTSSBCCCSSSCCCEEEEC
T ss_pred -------e------E---------------cCCccCCCCeeEEcCCEeecchhh
Confidence 0 1 2233 4444 88999999999887
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=114.78 Aligned_cols=71 Identities=17% Similarity=0.348 Sum_probs=61.2
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLF 125 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~ 125 (131)
+|+|||++||.++++++|.+|+++|.+.+. ++.++++.||++||+|+.|+++|++. |++++|+||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~--------------~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~ 66 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSR--------------ELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELL 66 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCC--------------BCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCcE--------------EEEeCCccccccCCeecCCCCccCCCccEeeCCEEE
Confidence 589999999999999877777777764332 33889999999999999999999987 889999999
Q ss_pred cCCCCC
Q psy4437 126 CRNDFF 131 (131)
Q Consensus 126 C~~cy~ 131 (131)
|+.||.
T Consensus 67 C~~c~~ 72 (82)
T 2ehe_A 67 CNDCYC 72 (82)
T ss_dssp ETTTSS
T ss_pred CHHHHh
Confidence 999984
No 11
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-21 Score=113.01 Aligned_cols=73 Identities=14% Similarity=0.309 Sum_probs=60.6
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLF 125 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~ 125 (131)
+++|||++||.++++++|.+|+++|.+.+. +..++.++++.||++||+|+.|+++|++. |++.+|+||
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~-----------~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~y 69 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGK-----------GSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVY 69 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSS-----------CCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEEC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCC-----------CceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEE
Confidence 478999999999999877777777764110 22345999999999999999999999987 889999999
Q ss_pred cCCCC
Q psy4437 126 CRNDF 130 (131)
Q Consensus 126 C~~cy 130 (131)
|+.||
T Consensus 70 C~~cy 74 (77)
T 2egq_A 70 CPDCA 74 (77)
T ss_dssp CHHHH
T ss_pred ChHHh
Confidence 98876
No 12
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.5e-20 Score=109.68 Aligned_cols=70 Identities=26% Similarity=0.484 Sum_probs=63.4
Q ss_pred CccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecc-cCcCCCCCCCCCCCccccC
Q psy4437 3 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCR-NDFFRSPVRFPSGCGVGLS 72 (131)
Q Consensus 3 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~-~c~~~~~~~~C~~c~~~i~ 72 (131)
++|.+|+++|.+++.|.++|+.||++||+|+.|+++|.+..| .++|++||+ .||.++++++|.+|++++.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 579999999986667899999999999999999999998666 899999999 6999999999999987654
No 13
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.4e-20 Score=110.84 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=58.0
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLF 125 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~ 125 (131)
+|+|||++||.++++++|.+|+++|.+ . .+.++++.||++||+|+.|+++|.+. |++++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~---------------~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~y 64 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQ---------------G-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPY 64 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCS---------------C-CEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecC---------------c-EEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEE
Confidence 588999999999998776666666543 2 23899999999999999999999876 899999999
Q ss_pred cCCCC
Q psy4437 126 CRNDF 130 (131)
Q Consensus 126 C~~cy 130 (131)
|+.||
T Consensus 65 C~~cy 69 (80)
T 2cuq_A 65 CVACF 69 (80)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 98876
No 14
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.6e-20 Score=111.04 Aligned_cols=70 Identities=16% Similarity=0.343 Sum_probs=58.9
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLF 125 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~ 125 (131)
++.+||++||.++++++|.+|+++|.+.+. ++.++++.||++||+|..|+++|.++ |+++++++|
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~--------------~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~y 66 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQ--------------NVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFY 66 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSC--------------EEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCce--------------EEEECccccccccCchhhCCCccCCCccEeeCCEEE
Confidence 468999999999998776666666654332 23899999999999999999999988 899999999
Q ss_pred cCCCC
Q psy4437 126 CRNDF 130 (131)
Q Consensus 126 C~~cy 130 (131)
|+.||
T Consensus 67 C~~cy 71 (82)
T 1x63_A 67 CVTCH 71 (82)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 98876
No 15
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=2.1e-20 Score=110.07 Aligned_cols=68 Identities=24% Similarity=0.598 Sum_probs=57.7
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLF 125 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~ 125 (131)
+|++||++||.++++++|.+|+++|. +.. +.++++.||++||+|+.|+++|.++ |++++|+||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~---------------~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~y 64 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVL---------------ENY-LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF 64 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCC---------------SSC-EEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEE
T ss_pred CCCccchhHHhhhcCCccccCCCeec---------------cee-EEECCCeEecCcCChhhCCCCCCCCcEEeECCEEE
Confidence 57899999999999876666665554 322 3899999999999999999999887 999999999
Q ss_pred cCCCC
Q psy4437 126 CRNDF 130 (131)
Q Consensus 126 C~~cy 130 (131)
|+.||
T Consensus 65 C~~~y 69 (80)
T 1x3h_A 65 CELHY 69 (80)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98876
No 16
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=1.3e-19 Score=105.81 Aligned_cols=67 Identities=22% Similarity=0.563 Sum_probs=61.0
Q ss_pred CCccccCCccccC---ceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCc
Q psy4437 2 LISCAGCEKPILD---KFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCG 68 (131)
Q Consensus 2 ~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~ 68 (131)
.++|++|+++|.+ .+++.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|..++
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 4789999999985 467899999999999999999999998766 899999999999999999998765
No 17
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4e-20 Score=108.98 Aligned_cols=65 Identities=29% Similarity=0.680 Sum_probs=59.5
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+++|.+++++||+.||.++|+++|++
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHHcCCCCCC
Confidence 46799999999877789999999999999999999999987669999999999999999998864
No 18
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=1.7e-20 Score=110.79 Aligned_cols=70 Identities=17% Similarity=0.420 Sum_probs=55.1
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCcccc
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGL 71 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i 71 (131)
..+|.+|+++|.+.+.+.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.+|+++.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 3679999999987778899999999999999999999998766 899999999999999999999998764
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.4e-19 Score=105.59 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=59.6
Q ss_pred CCCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecc-cCcCCCCCCCCCC
Q psy4437 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCR-NDFFRSPVRFPSG 66 (131)
Q Consensus 1 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~-~c~~~~~~~~C~~ 66 (131)
+.++|.+|+++|.+.+.|.++++.||++||+|+.|+++|.+..| .+++++||+ .||.++|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 35789999999997767889999999999999999999998766 899999999 7999999998864
No 20
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=2.2e-19 Score=105.91 Aligned_cols=68 Identities=19% Similarity=0.458 Sum_probs=55.5
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc--ee-ccCCe
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK--CF-SREGK 123 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~--~~-~~~g~ 123 (131)
++.+||++||.++++++|.+|+++|. +.. +.++++.||++||+|+.|+++|..+ |+ +.+++
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~---------------~~~-~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~ 64 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMT---------------GPF-MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHAT 64 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCC---------------SCC-BCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSC
T ss_pred CCCccchhHHhhhcCCcCccCCCCcC---------------ceE-EEECCceeccccCCccCCCCccCCCCcEEEeeCCE
Confidence 36799999999999976666666655 222 3899999999999999999999753 66 58999
Q ss_pred eecCCCC
Q psy4437 124 LFCRNDF 130 (131)
Q Consensus 124 ~~C~~cy 130 (131)
|||+.||
T Consensus 65 ~~C~~c~ 71 (81)
T 1x6a_A 65 LYCGKCH 71 (81)
T ss_dssp EEEHHHH
T ss_pred EECHHHH
Confidence 9998876
No 21
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=103.34 Aligned_cols=65 Identities=29% Similarity=0.615 Sum_probs=59.0
Q ss_pred CCccccCCcccc-CceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|++|+++|. ++.++.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 468999999998 5667889999999999999999999998777 8999999999999999998864
No 22
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=3.2e-19 Score=105.26 Aligned_cols=67 Identities=25% Similarity=0.636 Sum_probs=54.1
Q ss_pred CCeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eecc-CCee
Q psy4437 47 EGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSR-EGKL 124 (131)
Q Consensus 47 ~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~-~g~~ 124 (131)
+|+|||++||. +++++ |.+|+++|.+. ++.++++.||++||+|+.|+++|++. |+.. +|+|
T Consensus 2 ~g~~yC~~~y~-~~~~~---------------C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~ 64 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEK---------------CATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQI 64 (81)
T ss_dssp CCCCCCCCCCC-SSCCB---------------CTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCC
T ss_pred cCCEECHHHhh-cCCCc---------------cccCCCeecce-eEEECCccccHHhcCcccCCCccCCCeeEECCCCEE
Confidence 68999999998 66655 55555555543 34999999999999999999999977 6665 7999
Q ss_pred ecCCCC
Q psy4437 125 FCRNDF 130 (131)
Q Consensus 125 ~C~~cy 130 (131)
||+.||
T Consensus 65 yC~~cy 70 (81)
T 2dlo_A 65 HCIEDF 70 (81)
T ss_dssp EEHHHH
T ss_pred ECHHHH
Confidence 998876
No 23
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=5.8e-19 Score=101.34 Aligned_cols=64 Identities=31% Similarity=0.643 Sum_probs=58.1
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. .+.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.+
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCcccCCeeccc-eEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 46899999999876 4889999999999999999999998766 8999999999999999998864
No 24
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1e-18 Score=100.90 Aligned_cols=63 Identities=27% Similarity=0.601 Sum_probs=57.0
Q ss_pred CCccccCCccccC---ceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCC
Q psy4437 2 LISCAGCEKPILD---KFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFP 64 (131)
Q Consensus 2 ~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C 64 (131)
.++|.+|+++|.+ .+++.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 4689999999985 467889999999999999999999998877 79999999999999998764
No 25
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=5.3e-19 Score=102.00 Aligned_cols=65 Identities=23% Similarity=0.562 Sum_probs=58.9
Q ss_pred CCccccCCccccCc-eeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. +++.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 47899999999863 67889999999999999999999998766 8999999999999999998864
No 26
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=6.6e-19 Score=101.60 Aligned_cols=65 Identities=23% Similarity=0.588 Sum_probs=59.0
Q ss_pred CCccccCCccccCc-eeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. .++.++++.||++||+|..|+++|.+..| .+++++||+.||.++++++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 46899999999875 57899999999999999999999998766 8999999999999999998863
No 27
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.8e-19 Score=101.43 Aligned_cols=64 Identities=27% Similarity=0.600 Sum_probs=58.2
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. .|.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.+
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 5 SSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred cCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 46899999999876 5889999999999999999999998766 8999999999999999998864
No 28
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.9e-18 Score=103.88 Aligned_cols=64 Identities=27% Similarity=0.558 Sum_probs=57.7
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. .|.++++.||++||+|..|+++|.+..| .+++++||+.||.++|+++|+.
T Consensus 25 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCccCCCEecce-EEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 46799999999765 6789999999999999999999998766 8999999999999999998863
No 29
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.6e-18 Score=100.92 Aligned_cols=63 Identities=24% Similarity=0.423 Sum_probs=56.8
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~ 65 (131)
.++|.+|+++|.+. .|.++++.||++||+|..|+++|.+..|.++|++||+.||.++++|.++
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 15 KYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHHhCCCCCC
Confidence 46899999999955 5889999999999999999999999878999999999999999987543
No 30
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.4e-18 Score=101.45 Aligned_cols=64 Identities=34% Similarity=0.762 Sum_probs=57.8
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-Cc-CCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SR-EGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~-~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|++|+++|.+. ++.++++.||++||+|+.|+++|.+..| .. +|++||+.||.++|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 15 LEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 46899999999875 7899999999999999999999998877 44 78999999999999998864
No 31
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.9e-18 Score=101.62 Aligned_cols=64 Identities=30% Similarity=0.809 Sum_probs=58.0
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|++|+++|.+. .|.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.+
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp SCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 46899999999885 6889999999999999999999998655 8999999999999999998864
No 32
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.71 E-value=1.4e-18 Score=98.62 Aligned_cols=61 Identities=20% Similarity=0.571 Sum_probs=54.6
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~ 63 (131)
.++|++|+++|.+ +++.++|+.||++||+|+.|+++|.+..| .++|++||+.||.++|+++
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECCS-CEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEecc-eEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4689999999995 46889999999999999999999998666 8999999999999888764
No 33
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.7e-18 Score=101.08 Aligned_cols=64 Identities=20% Similarity=0.474 Sum_probs=56.1
Q ss_pred CCccccCCccccC-ceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILD-KFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~ 65 (131)
..+|.+|+++|.+ +.++.++|+.||++||+|..|+++|.+..| .++|++||+.||.++++++|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4689999999974 556789999999999999999999998666 899999999999999998875
No 34
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=4.3e-18 Score=102.52 Aligned_cols=64 Identities=23% Similarity=0.506 Sum_probs=58.7
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~ 65 (131)
..+|.+|+++|.+.+.|.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 3579999999988778899999999999999999999998655 899999999999999999887
No 35
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.9e-17 Score=97.82 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=55.5
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc---CcCCeeecccCcCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF---SREGKLFCRNDFFRSPVRFP 64 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f---~~~~~~~C~~c~~~~~~~~C 64 (131)
..+|.+|+++|.+.+.+.++++.||++||+|+.|+++|.+..| .++|++||+.||.++++...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 4679999999988777889999999999999999999998765 37999999999999887543
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.6e-18 Score=100.70 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=53.5
Q ss_pred CeeecccCcCCCCCCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCC-eee
Q psy4437 48 GKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREG-KLF 125 (131)
Q Consensus 48 ~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g-~~~ 125 (131)
+.+||++||.++++++|.+|+++|. +. +++++++.||++||+|..|+++|..+ ++..++ .+|
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~---------------~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~ 65 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE---------------GE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECM 65 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC---------------SC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEE
T ss_pred CCCcchHHHHhHhCCcCccccCEec---------------cc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEE
Confidence 5689999999999976666666554 22 23899999999999999999999866 666555 579
Q ss_pred cCCCC
Q psy4437 126 CRNDF 130 (131)
Q Consensus 126 C~~cy 130 (131)
|..||
T Consensus 66 C~~C~ 70 (81)
T 1v6g_A 66 CQKCS 70 (81)
T ss_dssp EHHHH
T ss_pred Chhhh
Confidence 98775
No 37
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=5.1e-18 Score=99.76 Aligned_cols=64 Identities=27% Similarity=0.576 Sum_probs=58.0
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|.+|+++|.+. .|.++++.||++||+|+.|+++|.+..| .+++++||+.||.++++++|+.
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp SCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 46899999999876 6889999999999999999999988666 8999999999999999998863
No 38
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7e-18 Score=101.18 Aligned_cols=63 Identities=24% Similarity=0.537 Sum_probs=56.6
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~ 65 (131)
..+|.+|+++|.+. ++.++++.||++||+|..|+++|.+..| .+++++||+.||.++|++++.
T Consensus 25 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46799999999875 6889999999999999999999998544 899999999999999998765
No 39
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.7e-17 Score=97.63 Aligned_cols=58 Identities=29% Similarity=0.747 Sum_probs=51.8
Q ss_pred CCCccccccCCcccccceeeeecCCcccccCccccccccccccceeccCCeeecCCCC
Q psy4437 73 SSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130 (131)
Q Consensus 73 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~g~~~C~~cy 130 (131)
......|..|+++|.+.+.+.++++.||++||+|..|+++|.+.|+++||+|||+.||
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y 69 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDY 69 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHH
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHH
Confidence 3445789999999987777799999999999999999999986699999999999987
No 40
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1e-17 Score=96.13 Aligned_cols=61 Identities=26% Similarity=0.670 Sum_probs=55.0
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~ 63 (131)
..+|.+|+++|.+. ++.++++.||++||+|..|+++|.+..| .+++++||+.||.++++++
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp SSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 46899999999865 6889999999999999999999999777 7999999999999888764
No 41
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.2e-18 Score=100.53 Aligned_cols=63 Identities=24% Similarity=0.490 Sum_probs=56.6
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~ 65 (131)
..+|.+|+++|.+. ++.++++.||++||+|..|+++|.+..| .+++++||+.||.+++++++.
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46899999999886 6889999999999999999999987655 899999999999999988754
No 42
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.67 E-value=1.5e-17 Score=112.78 Aligned_cols=69 Identities=20% Similarity=0.576 Sum_probs=63.4
Q ss_pred CccccCCccccCceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCCCCcccc
Q psy4437 3 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGL 71 (131)
Q Consensus 3 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i 71 (131)
.+|.+|+++|.+.+.|.++++.||++||+|+.|+++|.+..| .++|++||+.||.++++++|.+|++++
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 359999999987777889999999999999999999987656 899999999999999999999999885
No 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.2e-17 Score=93.93 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=53.0
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCC-CCcc-CcCCeeecccCcCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS-DKCF-SREGKLFCRNDFFRSPVR 62 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f-~~~~~~~C~~c~~~~~~~ 62 (131)
.++|++|+++|.+. +|.++++.||++||+|+.|+++|. +..| .+++++||..||.+.++.
T Consensus 5 ~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 5 SSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 47899999999885 688999999999999999999998 5555 899999999999877653
No 44
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=9.7e-17 Score=94.79 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=51.1
Q ss_pred CCccccccCCcccccceeeeecCCcccccCccccccccccccc-ee--ccCCeeecCCCCC
Q psy4437 74 SMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CF--SREGKLFCRNDFF 131 (131)
Q Consensus 74 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~--~~~g~~~C~~cy~ 131 (131)
....+|.+|+++|.+.+.+.++++.||++||+|+.|+++|... |+ ++||++||+.||.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 3457899999999887777899999999999999999999988 65 5799999999984
No 45
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=2.6e-17 Score=97.15 Aligned_cols=64 Identities=23% Similarity=0.543 Sum_probs=56.8
Q ss_pred CCccccCCccccCc-eeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRFPS 65 (131)
Q Consensus 2 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~~~C~ 65 (131)
.++|++|+++|... .++.++++.||++||+|..|+++|.+..| .+++++||+.||.+++++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 46899999999853 35889999999999999999999998766 899999999999999988764
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-17 Score=103.84 Aligned_cols=59 Identities=36% Similarity=0.926 Sum_probs=53.0
Q ss_pred CccccCCccccCceeEeecCCccccCCcccCCCcCcCC--C-CccCcCCeeecccCcCCCCC
Q psy4437 3 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--D-KCFSREGKLFCRNDFFRSPV 61 (131)
Q Consensus 3 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~-~~f~~~~~~~C~~c~~~~~~ 61 (131)
++|.+|+++|.+++++.++++.||++||+|..|+++|. + .+|.++|++||+.||.++|+
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 57999999999988899999999999999999999997 3 45589999999999987764
No 47
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.8e-17 Score=94.73 Aligned_cols=60 Identities=22% Similarity=0.585 Sum_probs=53.3
Q ss_pred CCccccCCccccC-ceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCC
Q psy4437 2 LISCAGCEKPILD-KFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPV 61 (131)
Q Consensus 2 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~ 61 (131)
.++|.+|+++|.+ +.++.++++.||++||+|+.|+++|.+..| .+++++||+.||.+++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4689999999986 457889999999999999999999988766 89999999999987764
No 48
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.5e-16 Score=91.65 Aligned_cols=55 Identities=25% Similarity=0.692 Sum_probs=45.7
Q ss_pred cccccCCccccc---ceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCCC
Q psy4437 77 ISCAGCEKPILD---KFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDFF 131 (131)
Q Consensus 77 ~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy~ 131 (131)
.+|..|+++|.+ ..++.++++.||++||+|+.|+++|.+. |++++|+|||+.||.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 346666666663 3455999999999999999999999877 899999999999984
No 49
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=98.80 Aligned_cols=56 Identities=36% Similarity=0.984 Sum_probs=50.6
Q ss_pred CccccccCCcccccceeeeecCCcccccCccccccccccc--c-ceeccCCeeecCCCC
Q psy4437 75 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--D-KCFSREGKLFCRNDF 130 (131)
Q Consensus 75 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~-~~~~~~g~~~C~~cy 130 (131)
...+|.+|+++|.++.++.++++.||++||+|..|+++|. + .|++++|+|||+.||
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy 118 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHH
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHh
Confidence 3478999999999988779999999999999999999997 2 399999999999887
No 50
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.63 E-value=5.6e-17 Score=93.26 Aligned_cols=60 Identities=22% Similarity=0.540 Sum_probs=52.6
Q ss_pred CCccccCCccccCce-eEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCCCCC
Q psy4437 2 LISCAGCEKPILDKF-LLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPV 61 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~~~~ 61 (131)
..+|++|+++|.+.+ ++.++++.||++||+|+.|+++|.+..| .++|++||+.||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 568999999998654 5689999999999999999999988655 89999999999977653
No 51
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=90.60 Aligned_cols=58 Identities=28% Similarity=0.579 Sum_probs=51.0
Q ss_pred CCccccCCccccC-ceeEeecCCccc--cCCcccCCCcCcCCCCcc-CcCCeeec-ccCcCCC
Q psy4437 2 LISCAGCEKPILD-KFLLNVLERTWH--ADCVRCYDCHHTLSDKCF-SREGKLFC-RNDFFRS 59 (131)
Q Consensus 2 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~f-~~~~~~~C-~~c~~~~ 59 (131)
.++|.+|+++|.+ ++.|.++|+.|| ++||+|+.|+++|.+..| .++|+||| .+||.+.
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999985 367899999999 999999999999998766 89999999 7887543
No 52
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.9e-16 Score=91.53 Aligned_cols=53 Identities=21% Similarity=0.528 Sum_probs=44.5
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccc-cc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS-DK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~-~~~~~g~~~C~~cy 130 (131)
+.|.+|+++|.+.. +.++++.||++||+|+.|+++|. +. |++.++++||..||
T Consensus 6 ~~C~~C~~~I~~~~-v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~ 60 (73)
T 1wig_A 6 SGCDSCEKYITGRV-LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACR 60 (73)
T ss_dssp CSCSSSCCCCSSCC-BCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHH
T ss_pred CCcccCCCEecCee-EEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHC
Confidence 45666666776643 48999999999999999999998 44 88999999999986
No 53
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.2e-16 Score=91.52 Aligned_cols=54 Identities=26% Similarity=0.736 Sum_probs=47.9
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
...|..|+++|.+.. +.++++.||++||+|..|+++|.+. |+.++|++||+.||
T Consensus 5 ~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 59 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRV-IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH 59 (70)
T ss_dssp SSBCSSSCCBCCSCC-EEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHH
T ss_pred CCcCccCCCEecceE-EEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHh
Confidence 457888888888654 5999999999999999999999988 88899999999886
No 54
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=8.7e-17 Score=94.70 Aligned_cols=64 Identities=20% Similarity=0.469 Sum_probs=55.4
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCC-Ccc--CcCCeeecccCcCCCCCCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD-KCF--SREGKLFCRNDFFRSPVRFPSG 66 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~f--~~~~~~~C~~c~~~~~~~~C~~ 66 (131)
.++|++|+++|.+. .+.++++.||++||+|..|+++|.+ ..| ++++++||+.||.+++++.+++
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 15 GEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp SCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred CCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 46899999999954 6889999999999999999999964 556 4899999999999988876653
No 55
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=92.94 Aligned_cols=57 Identities=26% Similarity=0.691 Sum_probs=51.1
Q ss_pred CCccccCCccccC----ceeEeecCCccccCCcccCCCcCcCCCCcc-CcCCeeecccCcCC
Q psy4437 2 LISCAGCEKPILD----KFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58 (131)
Q Consensus 2 ~~~C~~C~~~I~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~ 58 (131)
.++|++|+++|.+ ++++.++++.||++||+|+.|+++|.+..| .+++++||+.||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 4789999999984 567899999999999999999999998766 89999999999853
No 56
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.9e-16 Score=90.83 Aligned_cols=54 Identities=28% Similarity=0.690 Sum_probs=48.3
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecC-CCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCR-NDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~-~cy 130 (131)
.+|..|+++|.+.+.+.++++.||++||+|..|+++|.+. |++++++|||+ .||
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy 65 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCY 65 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHH
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHH
Confidence 5788888888866666999999999999999999999987 89999999999 686
No 57
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.8e-16 Score=91.28 Aligned_cols=54 Identities=30% Similarity=0.762 Sum_probs=46.4
Q ss_pred cccccCCccccc---ceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILD---KFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
..|..|+++|.+ ..++.++++.||++||+|+.|+++|.+. |++++|+|||..||
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 63 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHH
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHc
Confidence 567777777774 3556899999999999999999999877 88899999998876
No 58
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.60 E-value=1.2e-16 Score=90.62 Aligned_cols=53 Identities=23% Similarity=0.789 Sum_probs=46.4
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|.+|+++|.+. .+.++++.||++||+|+.|+++|.+. |++++|++||+.||
T Consensus 6 ~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 59 (66)
T 1nyp_A 6 PICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59 (66)
T ss_dssp CEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHH
T ss_pred CCCcccCCEecce-EEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHH
Confidence 4677888888744 45999999999999999999999887 99999999999886
No 59
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=2.1e-16 Score=91.01 Aligned_cols=54 Identities=22% Similarity=0.661 Sum_probs=46.0
Q ss_pred cccccCCcccccc-eeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.+. .++.++++.||++||+|..|+++|.++ |++++|++||+.||
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHH
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHH
Confidence 4566677777653 455999999999999999999999988 89999999999886
No 60
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=3.9e-16 Score=90.81 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=47.6
Q ss_pred ccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecC-CCC
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCR-NDF 130 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~-~cy 130 (131)
+|.+|+++|.+.+.+.++++.||++||+|..|+++|+++ |++++|++||+ .||
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy 56 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 56 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHH
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHH
Confidence 588888888866666999999999999999999999987 89999999999 586
No 61
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=2.7e-16 Score=89.88 Aligned_cols=53 Identities=26% Similarity=0.710 Sum_probs=46.3
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.+.. +.++++.||++||+|+.|+++|.+. |++++++|||+.||
T Consensus 6 ~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 59 (69)
T 2cur_A 6 SGCVKCNKAITSGG-ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59 (69)
T ss_dssp CCCSSSCCCCCTTC-EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHH
T ss_pred CCCcccCCEeCcce-EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHh
Confidence 56777888887654 4999999999999999999999876 89999999998876
No 62
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.59 E-value=2.4e-16 Score=92.77 Aligned_cols=55 Identities=16% Similarity=0.521 Sum_probs=49.1
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
..+|..|+++|.+.+.+.+.++.||++||+|+.|+++|... |+++++++||+.||
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 62 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCY 62 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHH
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHH
Confidence 36788999999766667999999999999999999999988 89999999999886
No 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=3.8e-16 Score=89.89 Aligned_cols=54 Identities=22% Similarity=0.655 Sum_probs=45.9
Q ss_pred cccccCCcccccc-eeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.+. .++.++++.||++||+|+.|+++|.++ |++++|++||+.||
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHH
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHH
Confidence 4566677777652 555999999999999999999999987 89999999999876
No 64
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=5.4e-16 Score=90.95 Aligned_cols=54 Identities=22% Similarity=0.466 Sum_probs=47.4
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccceeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~g~~~C~~cy 130 (131)
..+|..|+++|.+.. +.++++.||++||+|..|+++|.+.+++++|+|||..||
T Consensus 15 ~~~C~~C~~~I~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy 68 (79)
T 2cor_A 15 KYICQKCHAIIDEQP-LIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCH 68 (79)
T ss_dssp CCBCTTTCCBCCSCC-CCCSSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHH
T ss_pred CCCCccCCCEecceE-EEECcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHH
Confidence 367888888888555 499999999999999999999998866999999999886
No 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.58 E-value=3.6e-16 Score=89.83 Aligned_cols=54 Identities=22% Similarity=0.667 Sum_probs=44.6
Q ss_pred cccccCCcccccce-eeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKF-LLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|.+|+++|.+.+ ++.+.++.||++||+|+.|+++|.++ |++++|++||+.||
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHH
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHH
Confidence 45666666666432 34899999999999999999999988 88999999999886
No 66
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=3.9e-16 Score=89.40 Aligned_cols=53 Identities=32% Similarity=0.744 Sum_probs=46.5
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.+.. +.++++.||++||+|..|+++|.+. |++++++|||+.||
T Consensus 6 ~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 59 (70)
T 2d8z_A 6 SGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59 (70)
T ss_dssp CBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHH
T ss_pred CCCcccCCeeccce-EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHH
Confidence 46778888887655 4999999999999999999999877 88999999998876
No 67
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=5.7e-16 Score=89.15 Aligned_cols=54 Identities=22% Similarity=0.674 Sum_probs=46.2
Q ss_pred cccccCCccccc-ceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILD-KFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|.+|+++|.+ ..++.++++.||++||+|..|+++|.+. |++++++|||+.||
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHH
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHH
Confidence 467777777765 3455999999999999999999999876 99999999999886
No 68
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.58 E-value=2.6e-16 Score=99.61 Aligned_cols=71 Identities=21% Similarity=0.543 Sum_probs=61.2
Q ss_pred ccccCCccccC-ceeEeecCCccccCCcccCCCcCcC-CCCcc-CcCCeeecccCcCCCCCCCCCCCccccCCC
Q psy4437 4 SCAGCEKPILD-KFLLNVLERTWHADCVRCYDCHHTL-SDKCF-SREGKLFCRNDFFRSPVRFPSGCGVGLSSS 74 (131)
Q Consensus 4 ~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~ 74 (131)
+|.+|+++|.+ ..++.++++.||++||+|..|+++| .+..| .+++++||..||.++++++|..++.++.+.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 79999999986 3467899999999999999999999 45545 899999999999999999998877665543
No 69
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.1e-16 Score=91.91 Aligned_cols=55 Identities=27% Similarity=0.648 Sum_probs=49.0
Q ss_pred CccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 75 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 75 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
...+|..|+++|.+. ++.++++.||++||+|..|+++|.+. |+++++++||+.||
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy 69 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHA 69 (79)
T ss_dssp CCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHH
T ss_pred CCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHH
Confidence 346899999999886 45999999999999999999999876 99999999999887
No 70
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=8.5e-16 Score=89.51 Aligned_cols=54 Identities=22% Similarity=0.681 Sum_probs=46.4
Q ss_pred cccccCCccccc-ceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILD-KFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
..|.+|+++|.+ ..++.++++.||++||+|..|+++|.++ |++++|++||+.||
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHH
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHH
Confidence 567777777763 4445899999999999999999999987 89999999999886
No 71
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=7.3e-16 Score=92.65 Aligned_cols=55 Identities=27% Similarity=0.625 Sum_probs=49.6
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
...|..|+++|.+.+.+.++++.||++||+|..|+++|..+ |+++++++||+.||
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 70 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHH
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHH
Confidence 36788888988876667999999999999999999999988 99999999999876
No 72
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=7.8e-16 Score=92.34 Aligned_cols=53 Identities=28% Similarity=0.695 Sum_probs=46.0
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.+..+ .++++.||++||+|..|+++|.+. |++.+|++||+.||
T Consensus 26 ~~C~~C~~~I~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy 79 (90)
T 2dar_A 26 PMCAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79 (90)
T ss_dssp CBBSSSCCBCCSCEE-EETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHH
T ss_pred CCCccCCCEecceEE-EECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHH
Confidence 567777777765544 899999999999999999999987 88999999999887
No 73
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=7.5e-16 Score=96.27 Aligned_cols=55 Identities=33% Similarity=0.987 Sum_probs=49.8
Q ss_pred ccccccCCcccccceeeeecCCcccccCcccccccccccc---ceeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~---~~~~~~g~~~C~~cy 130 (131)
..+|.+|+++|.+..++.++++.||++||+|+.|+++|+. .|++++|+|||+.||
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y 60 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHH
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHH
Confidence 3679999999999877799999999999999999999984 399999999999887
No 74
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.56 E-value=5.8e-16 Score=87.53 Aligned_cols=54 Identities=26% Similarity=0.608 Sum_probs=45.5
Q ss_pred cccccCCccccc-ceeeeecCCccc--ccCccccccccccccc-eeccCCeeec-CCCC
Q psy4437 77 ISCAGCEKPILD-KFLLNVLERTWH--ADCVRCYDCHHTLSDK-CFSREGKLFC-RNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~-~~~~~g~~~C-~~cy 130 (131)
..|.+|+++|.+ ...++++++.|| ++||+|+.|+++|.+. |++++|+||| .+||
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~ 61 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECK 61 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHH
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHh
Confidence 357778888875 245599999999 9999999999999887 9999999999 5554
No 75
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.1e-15 Score=91.45 Aligned_cols=54 Identities=28% Similarity=0.680 Sum_probs=48.5
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
..+|..|+++|.+.. +.++++.||++||+|..|+++|..+ |+++++++||+.||
T Consensus 25 ~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 79 (89)
T 1x64_A 25 MPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHA 79 (89)
T ss_dssp CCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHH
T ss_pred CCCcccCCCEecccE-EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHH
Confidence 467999999998854 5999999999999999999999987 99999999999887
No 76
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.53 E-value=5e-15 Score=93.70 Aligned_cols=61 Identities=16% Similarity=0.525 Sum_probs=46.4
Q ss_pred cCCCCCC--CCCCCccccCCCCccccccCCcccccceeeeecCCcccccCccccccccccc-cc-eeccCCeeecCCCC
Q psy4437 56 FFRSPVR--FPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS-DK-CFSREGKLFCRNDF 130 (131)
Q Consensus 56 ~~~~~~~--~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~-~~~~~g~~~C~~cy 130 (131)
|.++|++ +|.+|+++|.+.+ .++.++++.||++||+|..|+++|. +. |++.++++||..||
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e--------------~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy 65 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE--------------MTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC--------------CCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGH
T ss_pred ChhhhCCCCcccCCCCeecCCc--------------eEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHh
Confidence 4566665 5555555554432 2338999999999999999999995 43 89999999999987
No 77
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.51 E-value=2.8e-15 Score=95.07 Aligned_cols=54 Identities=24% Similarity=0.631 Sum_probs=48.8
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|.+|+++|.++.++.++|+.||++||+|+.|+++|++. |+++||+|||+.||
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy 58 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCY 58 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHH
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHh
Confidence 5688888888877677999999999999999999999987 89999999999886
No 78
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.51 E-value=4.5e-15 Score=90.69 Aligned_cols=54 Identities=31% Similarity=0.773 Sum_probs=47.7
Q ss_pred cccccCCcccc-cceeeeecCCcccccCccccccccccccc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~g~~~C~~cy 130 (131)
.+|.+|+++|. +..++.++++.||++||+|..|+++|.+. |++++|++||+.||
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy 61 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT 61 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHH
T ss_pred CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHh
Confidence 57888888886 36666999999999999999999999877 89999999999887
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=2.1e-15 Score=95.29 Aligned_cols=54 Identities=37% Similarity=1.033 Sum_probs=48.2
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccc--cc-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLS--DK-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.++.++.++++.||++||+|+.|+++|+ +. |++++|+|||+.||
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy 62 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHH
T ss_pred CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHH
Confidence 57888888888887669999999999999999999997 23 99999999999887
No 80
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.48 E-value=9e-15 Score=93.28 Aligned_cols=54 Identities=31% Similarity=0.981 Sum_probs=48.8
Q ss_pred cccccCCcccccceeeeecCCcccccCcccccccccccc--c-eeccCCeeecCCCC
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD--K-CFSREGKLFCRNDF 130 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~-~~~~~g~~~C~~cy 130 (131)
.+|..|+++|.++.++.++++.||++||+|+.|+++|+. . |+.+||+|||+.||
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y 59 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 59 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHH
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCch
Confidence 579999999998877799999999999999999999963 3 89999999999886
No 81
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.47 E-value=2.2e-14 Score=96.36 Aligned_cols=55 Identities=47% Similarity=1.284 Sum_probs=50.2
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccceeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~g~~~C~~cy 130 (131)
...|..|+++|.++.++.++++.||++||+|+.|+++|.+..|.++|+|||+.||
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y 114 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDF 114 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHH
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCcc
Confidence 4789999999999877799999999999999999999998866899999998886
No 82
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.45 E-value=6.6e-14 Score=94.47 Aligned_cols=97 Identities=19% Similarity=0.393 Sum_probs=63.7
Q ss_pred ccccCCccccCc-eeEeecCCccccCCcccCCCcCcCC-CCcc-CcCCeeecccCcCCCCCCCCCCCccccCCCCccccc
Q psy4437 4 SCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLS-DKCF-SREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCA 80 (131)
Q Consensus 4 ~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~f-~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~ 80 (131)
+|.+|+++|.+. .++.++++.||++||+|..|+++|. +..| .+++++||..||.+.++++|.+.+........
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~~~~~~~---- 146 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGS---- 146 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-------------------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCCCCccccc----
Confidence 699999999864 4678999999999999999999996 4555 89999999999999999988776653211000
Q ss_pred cCCcccccceeeeecCCcccccCccc
Q psy4437 81 GCEKPILDKFLLNVLERTWHADCVRC 106 (131)
Q Consensus 81 ~C~~~I~~~~~~~~~~~~~H~~Cf~C 106 (131)
.=+..+.+. ...++..+|+...+.
T Consensus 147 ~~~v~vvge--p~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 147 GGDVMVVGE--PTLMGGEFGDEDERL 170 (188)
T ss_dssp -CCCEECCC--CEETTCCCCCTTEEE
T ss_pred CCcccccCC--CcccCCCCCCCCCce
Confidence 000001111 166778888877765
No 83
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=3.3e-14 Score=83.53 Aligned_cols=59 Identities=22% Similarity=0.512 Sum_probs=49.4
Q ss_pred CCccccCCccccCceeEeecCCccccCCcccCCCcCcCCCC-ccCcCC-eeecccCcCCCCC
Q psy4437 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREG-KLFCRNDFFRSPV 61 (131)
Q Consensus 2 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-~f~~~~-~~~C~~c~~~~~~ 61 (131)
.++|++|+++|.+. ++.++++.||++||+|..|+++|.+. .|..++ .+||..||.+.+.
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 15 GTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 46899999999864 78999999999999999999999864 555554 5799999977654
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.44 E-value=2.2e-14 Score=95.28 Aligned_cols=55 Identities=47% Similarity=1.284 Sum_probs=49.5
Q ss_pred ccccccCCcccccceeeeecCCcccccCccccccccccccceeccCCeeecCCCC
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~g~~~C~~cy 130 (131)
...|.+|+++|.++.++.++|+.||++||+|+.|+++|++..+++||++||+.||
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y 60 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDF 60 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHH
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccc
Confidence 3689999999998877799999999999999999999998866899999998886
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.68 E-value=5e-09 Score=50.15 Aligned_cols=30 Identities=33% Similarity=0.713 Sum_probs=27.9
Q ss_pred CCCccccCCccccCceeEeecCCccccCCc
Q psy4437 1 MLISCAGCEKPILDKFLLNVLERTWHADCV 30 (131)
Q Consensus 1 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 30 (131)
|..+|..|++.|+..+.+.++|+.||..||
T Consensus 2 m~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCCcCCccCCEEecceeEEECCeEecccCC
Confidence 788999999999988888899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.40 E-value=1.3e-07 Score=45.11 Aligned_cols=28 Identities=32% Similarity=0.749 Sum_probs=25.5
Q ss_pred cccccCCcccccceeeeecCCcccccCc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV 104 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 104 (131)
..|+.|++.|+..+.+.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 4799999999988888999999999998
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.51 E-value=0.63 Score=27.94 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=37.3
Q ss_pred CccccCCccccCceeEeec--CCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccccCCCCccccc
Q psy4437 3 ISCAGCEKPILDKFLLNVL--ERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCA 80 (131)
Q Consensus 3 ~~C~~C~~~I~~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~ 80 (131)
..|..|+..=....+|.-. ++.||..|+.=.. .+ ...+.-+|.+|. .|..|++.-....+..|.
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~------~~~~~W~C~~C~------~C~~C~~~~~~~~ll~Cd 73 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP------LKRAGWQCPECK------VCQNCKQSGEDSKMLVCD 73 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT------TTSTTCCCTTTC------CCTTTCCCSCCTTEEECS
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc------ccccCccCCcCC------cccccCccCCCCCeeECC
Confidence 3577777652212223222 5788988865321 11 234556676664 566777665555566666
Q ss_pred cCCc
Q psy4437 81 GCEK 84 (131)
Q Consensus 81 ~C~~ 84 (131)
.|.+
T Consensus 74 ~C~~ 77 (111)
T 2ysm_A 74 TCDK 77 (111)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 6654
No 88
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=89.83 E-value=0.14 Score=31.25 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=38.4
Q ss_pred CccccCCcccc-------CceeEeec--CCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccccCC
Q psy4437 3 ISCAGCEKPIL-------DKFLLNVL--ERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSS 73 (131)
Q Consensus 3 ~~C~~C~~~I~-------~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~ 73 (131)
..|..|...-. ++++|.-. ++.||+.|+.=. +......+.+.-+|.+|. .|..|++.-.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~-----~~~~~~~~~~~W~C~~C~------~C~~C~~~~~~ 70 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT-----LNMTEAVKTYKWQCIECK------SCILCGTSEND 70 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC-----HHHHHHHHHTTCCCGGGC------CCTTTTCCTTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh-----hhhhhccCCCccCccccC------ccCcccccCCC
Confidence 56778866431 12344444 678888876311 000001234556676662 57777776555
Q ss_pred CCccccccCCc
Q psy4437 74 SMLISCAGCEK 84 (131)
Q Consensus 74 ~~~~~C~~C~~ 84 (131)
+.+..|..|.+
T Consensus 71 ~~ll~Cd~C~~ 81 (114)
T 2kwj_A 71 DQLLFCDDCDR 81 (114)
T ss_dssp TTEEECSSSCC
T ss_pred CceEEcCCCCc
Confidence 66666666643
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=87.02 E-value=0.1 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.613 Sum_probs=15.1
Q ss_pred ecCCcccccCc--------cccccccccccc
Q psy4437 94 VLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 94 ~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
.=|..||..|. .|..|..++...
T Consensus 96 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 96 ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp TTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 34666776664 577888777654
No 90
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.03 E-value=1.5 Score=24.71 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred cCCeeecccCcCCCC----CCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCcc
Q psy4437 46 REGKLFCRNDFFRSP----VRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVR 105 (131)
Q Consensus 46 ~~~~~~C~~c~~~~~----~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~ 105 (131)
+.+.++|..|-.+.. .-.|..|++.-.++.+..|..|. +.||..|..
T Consensus 7 ~~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~-------------~~yH~~Cl~ 57 (77)
T 2e6s_A 7 GRNDTECDLCGGDPEKKCHSCSCRVCGGKHEPNMQLLCDECN-------------VAYHIYCLN 57 (77)
T ss_dssp CCCCCCCTTTCSCSSSCCSSSSCSSSCCCCCSTTEEECSSSC-------------CEEETTSSS
T ss_pred ccCCccChhhcCCCCeECCCCCCcCcCCcCCCCCEEEcCCCC-------------ccccccccC
Confidence 345667766654321 12455565554455555555553 457877754
No 91
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.55 E-value=2.8 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=22.1
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccc
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVG 70 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~ 70 (131)
+.|..|...+.+.....=|..||..|..+ ....|..|.+.
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~ 46 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEA-SGMQCPICQAP 46 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSBTTTCSS-SSSSCSSCCSS
T ss_pred CCceEeCCccCCeEEcCCCCcccHHHHcc-CCCCCCcCCcE
Confidence 56777776665533334466777777655 23344444443
No 92
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.38 E-value=2.7 Score=25.14 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.0
Q ss_pred cccCCCcCcCCCCccC-cCCeeecccCcCCCCCCCCCCCccccC
Q psy4437 30 VRCYDCHHTLSDKCFS-REGKLFCRNDFFRSPVRFPSGCGVGLS 72 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~-~~~~~~C~~c~~~~~~~~C~~c~~~i~ 72 (131)
+.|..|...+.+.... .=|..||..|..+.....|..|..++.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 7788888777654444 568888988887665556666666654
No 93
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.86 E-value=1.4 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=18.5
Q ss_pred ccccCCcccccceeeeecCCcccccCcc----------ccccccccc
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADCVR----------CYDCHHTLS 114 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf~----------C~~C~~~l~ 114 (131)
.|..|...|.....-..=+..||.+|+. |..|+.++.
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3444444443322212335567777762 666766654
No 94
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.43 E-value=1.8 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
+-|..|+..++..
T Consensus 52 yFC~~C~~LiSkk 64 (81)
T 2jrp_A 52 YFCQNGHGLISKK 64 (81)
T ss_dssp ECCTTTTCCCCTT
T ss_pred eeeccCCCEeecc
Confidence 4577787777765
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=72.38 E-value=3.3 Score=20.79 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=12.7
Q ss_pred cCCcccccCc--------cccccccccc
Q psy4437 95 LERTWHADCV--------RCYDCHHTLS 114 (131)
Q Consensus 95 ~~~~~H~~Cf--------~C~~C~~~l~ 114 (131)
=+..||.+|+ +|..|..++.
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4666777774 4666666654
No 96
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.88 E-value=0.91 Score=24.18 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=20.5
Q ss_pred CcccCCCcCcCCCCccCcCCeeecccCcCCC
Q psy4437 29 CVRCYDCHHTLSDKCFSREGKLFCRNDFFRS 59 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~ 59 (131)
=+.|..|...+.+.....=|..||..|..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~ 45 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRFCESCMAAL 45 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCCCHHHHHHH
T ss_pred CCCCCCCChHhcCeeECCCCCHHHHHHHHHH
Confidence 3778888877765433455777888876543
No 97
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=70.56 E-value=2.5 Score=29.00 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=22.8
Q ss_pred cccccCCcccccceeeeecCCcccccCc----------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV----------RCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf----------~C~~C~~~l~~~ 116 (131)
..|..|...|..+..-..-+..||..|+ +|..|+.++...
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3444454444433221123566888887 688888877654
No 98
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=70.45 E-value=2.2 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=16.2
Q ss_pred cccccccccccc-eeccCCeeec
Q psy4437 105 RCYDCHHTLSDK-CFSREGKLFC 126 (131)
Q Consensus 105 ~C~~C~~~l~~~-~~~~~g~~~C 126 (131)
.|..|+..++.. .+.+||+.||
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YC 31 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYC 31 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEES
T ss_pred cCCCCeeEechHHhhhcCCeEEe
Confidence 366777777765 7778888887
No 99
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=70.04 E-value=1.8 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=26.0
Q ss_pred ccccccCCcccccc----e--eeeecCCcccccCc--------cccccccccccc
Q psy4437 76 LISCAGCEKPILDK----F--LLNVLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 76 ~~~C~~C~~~I~~~----~--~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
...|..|...+.+. . ++..=|..||.+|+ +|..|..++...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 34566666665442 1 22445777888876 688888887654
No 100
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=69.37 E-value=2 Score=29.50 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=8.9
Q ss_pred CCccccCCccccCc
Q psy4437 2 LISCAGCEKPILDK 15 (131)
Q Consensus 2 ~~~C~~C~~~I~~~ 15 (131)
...|..|++.|..+
T Consensus 180 i~~C~iC~~iv~~g 193 (238)
T 3nw0_A 180 VKICNICHSLLIQG 193 (238)
T ss_dssp CCBCTTTCSBCSSC
T ss_pred CCcCcchhhHHhCC
Confidence 34677777777543
No 101
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.02 E-value=7.5 Score=21.07 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=23.3
Q ss_pred cccCCCcCcCCCC-cc--CcCCeeecccCcCCC--CCCCCCCCccccCCC
Q psy4437 30 VRCYDCHHTLSDK-CF--SREGKLFCRNDFFRS--PVRFPSGCGVGLSSS 74 (131)
Q Consensus 30 f~C~~C~~~l~~~-~f--~~~~~~~C~~c~~~~--~~~~C~~c~~~i~~~ 74 (131)
+.|..|...+... .. ..=+..||..|..+. ....|..|...+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4556665555432 11 123556666665321 234677777766543
No 102
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.83 E-value=3.5 Score=22.76 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=15.9
Q ss_pred CCCCCccc--cCCCCccccccCCccccc
Q psy4437 63 FPSGCGVG--LSSSMLISCAGCEKPILD 88 (131)
Q Consensus 63 ~C~~c~~~--i~~~~~~~C~~C~~~I~~ 88 (131)
+|..|+.. +...+.+.|..|+..|+.
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 56666655 444555677777775554
No 103
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.43 E-value=1.9 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=21.2
Q ss_pred CcccCCCcCcCCCCccCcCCeeecccCcCCC
Q psy4437 29 CVRCYDCHHTLSDKCFSREGKLFCRNDFFRS 59 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~ 59 (131)
=+.|..|...+.+.....=|..||..|..+.
T Consensus 20 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~ 50 (73)
T 2ysl_A 20 EVICPICLDILQKPVTIDCGHNFCLKCITQI 50 (73)
T ss_dssp CCBCTTTCSBCSSEEECTTCCEEEHHHHHHH
T ss_pred CCEeccCCcccCCeEEcCCCChhhHHHHHHH
Confidence 3778888887765433455778888887543
No 104
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=68.43 E-value=3.5 Score=22.43 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=29.0
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccccCCCCccccccCCccccc
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILD 88 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~i~~~~~~~C~~C~~~I~~ 88 (131)
+.|..|...+.+.....=|..||..|..+..... .........|+.|++++..
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~------~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEA------VTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCC------SSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhc------ccCCCCCCcCCCCCCcCCH
Confidence 6788887776653333456778888876543210 0000113456667666643
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.31 E-value=3.7 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=26.3
Q ss_pred CCccccccCCcccccceeeeecCCcccccCccccc
Q psy4437 74 SMLISCAGCEKPILDKFLLNVLERTWHADCVRCYD 108 (131)
Q Consensus 74 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~ 108 (131)
+....|.-|.+.+.+...|.-....-|+=||-|++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 34457777888777776667777788999999865
No 106
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.55 E-value=3.2 Score=21.95 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=23.2
Q ss_pred ccccCCcccccceeeeecCCcccccCc--------cccccccccccc
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
.|..|...+.+..++..=+..||..|. +|..|+.++...
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 455555554443232344666777775 488888888754
No 107
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=65.72 E-value=2.2 Score=22.17 Aligned_cols=39 Identities=18% Similarity=0.507 Sum_probs=24.6
Q ss_pred ccccCCcccccc------eeeeecCCcccccCc--------cccccccccccc
Q psy4437 78 SCAGCEKPILDK------FLLNVLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 78 ~C~~C~~~I~~~------~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
.|+.|...+.+. .++..=|..||.+|+ +|..|..++...
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 455565555432 122455777888886 588888888754
No 108
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=64.08 E-value=2.3 Score=25.86 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=12.0
Q ss_pred cCCCCCCCCCCCccccCCCCc
Q psy4437 56 FFRSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 56 ~~~~~~~~C~~c~~~i~~~~~ 76 (131)
|-+.....|..|++.|..+++
T Consensus 15 YAKS~RA~Ck~Ck~kI~KgeL 35 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKENF 35 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSSSE
T ss_pred EeCCCCCCchhhCCccCCCCE
Confidence 334444566667766666554
No 109
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.96 E-value=3.5 Score=22.19 Aligned_cols=40 Identities=23% Similarity=0.574 Sum_probs=25.5
Q ss_pred cccccCCcccccceeeeecCCcccccCc--------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
..|..|...+.+...+..=+..||..|. +|..|+.++...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4566666665554332355677777775 588888887654
No 110
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.91 E-value=3.6 Score=22.61 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=19.1
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
+.|..|...+.+.....=|..||..|..+
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 48 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTA 48 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHH
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHH
Confidence 77888887776533334466777777643
No 111
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=61.43 E-value=5.7 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCCCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFRSP 60 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~ 60 (131)
+.|..|...+.......=|..||..|..+..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHH
Confidence 7788888777653333457788988876654
No 112
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.45 E-value=2.4 Score=22.85 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=20.1
Q ss_pred CcccCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 29 CVRCYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
-+.|..|...+.+.....=|..||..|..+
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKG 44 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEEEEHHHHHH
T ss_pred CCCCccCCcccCCCEEccCCCHHHHHHHHH
Confidence 367888877776543334577888888654
No 113
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=59.48 E-value=1.8 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCccccCCCCc
Q psy4437 56 FFRSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 56 ~~~~~~~~C~~c~~~i~~~~~ 76 (131)
|-+.....|..|++.|..+++
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kgel 40 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSL 40 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCE
T ss_pred EeCCCCCcchhhCCccCCCCE
Confidence 444445566667666665554
No 114
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.90 E-value=3.2 Score=22.13 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=23.2
Q ss_pred cccccCCcccccceeeeecCCcccccCc--------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 116 (131)
..|..|...+.+ ++..=+..||..|. +|..|..++...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 345556555555 32445666777774 488888877654
No 115
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=58.41 E-value=2.9 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCcccCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 28 DCVRCYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 28 ~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
+=|.|..|...+.+.....-|..||..|..+
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~ 37 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQK 37 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHH
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHH
Confidence 3478888888776543346788999888644
No 116
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.31 E-value=4 Score=21.45 Aligned_cols=39 Identities=15% Similarity=0.506 Sum_probs=23.0
Q ss_pred cccccCCcccccc------eeeeecCCcccccCc--------ccccccccccc
Q psy4437 77 ISCAGCEKPILDK------FLLNVLERTWHADCV--------RCYDCHHTLSD 115 (131)
Q Consensus 77 ~~C~~C~~~I~~~------~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 115 (131)
..|..|...+.+. .++..=+..||.+|+ +|..|+.++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4566666655432 122445777888876 47777776653
No 117
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=57.92 E-value=1.9 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=13.4
Q ss_pred cCCCCCCCCCCCccccCCCCc
Q psy4437 56 FFRSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 56 ~~~~~~~~C~~c~~~i~~~~~ 76 (131)
|-+.....|..|++.|..+++
T Consensus 33 yAkS~RA~Ck~C~~kI~KgeL 53 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDSL 53 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTSE
T ss_pred EeccCCccCcccCCccCCCCE
Confidence 445555677777777766554
No 118
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.23 E-value=4.7 Score=21.83 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=27.4
Q ss_pred CCcccCCCcCcCCCC-cc--CcCCeeecccCcCCC--CCCCCCCCccccCCC
Q psy4437 28 DCVRCYDCHHTLSDK-CF--SREGKLFCRNDFFRS--PVRFPSGCGVGLSSS 74 (131)
Q Consensus 28 ~Cf~C~~C~~~l~~~-~f--~~~~~~~C~~c~~~~--~~~~C~~c~~~i~~~ 74 (131)
+-..|..|...+... .. ..=+..||..|..+. ....|..|...+.+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345677777666542 11 223667777775332 245788888877654
No 119
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.84 E-value=5.1 Score=21.54 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=23.7
Q ss_pred cccCCCcCcCCCCcc---CcCCeeecccCcCCC--CCCCCCCCccccCC
Q psy4437 30 VRCYDCHHTLSDKCF---SREGKLFCRNDFFRS--PVRFPSGCGVGLSS 73 (131)
Q Consensus 30 f~C~~C~~~l~~~~f---~~~~~~~C~~c~~~~--~~~~C~~c~~~i~~ 73 (131)
..|..|...+..... ..=+..||..|..+. ....|..|...+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 456666666544221 133566666665321 13467777777654
No 120
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=56.35 E-value=5.8 Score=20.97 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=13.0
Q ss_pred CeeecccCcCCC--CCCCCCCCccccCC
Q psy4437 48 GKLFCRNDFFRS--PVRFPSGCGVGLSS 73 (131)
Q Consensus 48 ~~~~C~~c~~~~--~~~~C~~c~~~i~~ 73 (131)
|..||..|..+. ....|..|...|..
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 445555554321 12356677666654
No 121
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=55.98 E-value=2 Score=28.81 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=24.4
Q ss_pred CcccCCCcCcCCCCcc-CcCCeeecccCcCC
Q psy4437 29 CVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f-~~~~~~~C~~c~~~ 58 (131)
=.+|+.|+.......- ..+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3689999998877554 68999999999854
No 122
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=54.73 E-value=4.8 Score=23.73 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=15.4
Q ss_pred ccCCcccCCCcCcCCCCccCcCCeeecccCcC
Q psy4437 26 HADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 57 (131)
Q Consensus 26 H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~ 57 (131)
|.+ ..|..|+.+|.- .++..+|..|..
T Consensus 30 ~M~-~~CP~Cq~eL~~----~g~~~hC~~C~~ 56 (101)
T 2jne_A 30 HME-LHCPQCQHVLDQ----DNGHARCRSCGE 56 (101)
T ss_dssp -CC-CBCSSSCSBEEE----ETTEEEETTTCC
T ss_pred ccc-ccCccCCCccee----cCCEEECccccc
Confidence 344 677777777753 244555666653
No 123
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=54.25 E-value=6.9 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=17.8
Q ss_pred cccCCCcCcCCCCccCcCCee-ecccCcCCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKL-FCRNDFFRS 59 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~-~C~~c~~~~ 59 (131)
+.|..|...+.+..+..=|.. +|..|..+.
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence 467777666655433333555 788776543
No 124
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.48 E-value=6.8 Score=20.98 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=22.7
Q ss_pred ecCCccccCCcccCCCcCc-CCCCcc---CcCCeeecccCcCC
Q psy4437 20 VLERTWHADCVRCYDCHHT-LSDKCF---SREGKLFCRNDFFR 58 (131)
Q Consensus 20 ~~~~~~H~~Cf~C~~C~~~-l~~~~f---~~~~~~~C~~c~~~ 58 (131)
+....+|+ ..|..|+.. +.+..| .=.+--+|..||.+
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 34556787 889999864 776544 12344566666643
No 125
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=53.40 E-value=3.8 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=17.6
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFF 57 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~ 57 (131)
+.|..|...+.+.....=|..||..|..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCIN 81 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHH
T ss_pred CCCcccCcccCCceECCCCCCccHHHHH
Confidence 5677777766553333446778888754
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=52.74 E-value=34 Score=20.31 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=7.1
Q ss_pred ccCCeeecCCC
Q psy4437 119 SREGKLFCRND 129 (131)
Q Consensus 119 ~~~g~~~C~~c 129 (131)
..+|.+.|.++
T Consensus 92 ~~~~~~c~~~~ 102 (107)
T 4gne_A 92 ALEGRLCCSEH 102 (107)
T ss_dssp TTTTCEECTTS
T ss_pred CCCCceecCCC
Confidence 46777777654
No 127
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.30 E-value=33 Score=20.30 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=32.9
Q ss_pred CccccCCccc------cCceeEeec--CCccccCCcccCCCcCcCCCCccCcCCeeecccCcCCCCCCCCCCCccc-cCC
Q psy4437 3 ISCAGCEKPI------LDKFLLNVL--ERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVG-LSS 73 (131)
Q Consensus 3 ~~C~~C~~~I------~~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~~~~C~~c~~~-i~~ 73 (131)
..|..|.+.- .++++|.-. ++.||+.|+.=. ..+ .....++.-+|.+|. .|..|+.. -..
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~---~~~--~~~~~~~~W~C~~C~------~C~vC~~~~~~~ 74 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFS---PEL--TVRVKALRWQCIECK------TCSSCRDQGKNA 74 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCC---HHH--HHHHHTSCCCCTTTC------CBTTTCCCCCTT
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCC---HHH--HHHhhccccccccCC------ccccccCcCCCc
Confidence 4677776542 122333322 466777665311 000 001234455566653 45666653 233
Q ss_pred CCccccccCCc
Q psy4437 74 SMLISCAGCEK 84 (131)
Q Consensus 74 ~~~~~C~~C~~ 84 (131)
+.+..|..|.+
T Consensus 75 ~~ll~Cd~C~~ 85 (112)
T 3v43_A 75 DNMLFCDSCDR 85 (112)
T ss_dssp CCCEECTTTCC
T ss_pred cceEEcCCCCC
Confidence 44566666654
No 128
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.29 E-value=4.5 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.488 Sum_probs=16.7
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFF 57 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~ 57 (131)
+.|..|...+.+.....=|..||..|..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 49 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCML 49 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHH
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHH
Confidence 5677776666543323346677777754
No 129
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=49.83 E-value=11 Score=18.71 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=6.0
Q ss_pred ccccCCccccC
Q psy4437 4 SCAGCEKPILD 14 (131)
Q Consensus 4 ~C~~C~~~I~~ 14 (131)
.|..|.+.+.+
T Consensus 7 ~C~IC~~~~~~ 17 (55)
T 1iym_A 7 ECAVCLAELED 17 (55)
T ss_dssp CCTTTCCCCCT
T ss_pred cCccCCccccC
Confidence 45556655543
No 130
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.70 E-value=4.7 Score=22.41 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=5.0
Q ss_pred ccccCCccc
Q psy4437 4 SCAGCEKPI 12 (131)
Q Consensus 4 ~C~~C~~~I 12 (131)
.|+.|...+
T Consensus 17 ~C~IC~~~~ 25 (81)
T 2ecl_A 17 TCAICRVQV 25 (81)
T ss_dssp CBTTTTBCT
T ss_pred CCcccChhh
Confidence 455555555
No 131
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=49.70 E-value=3.3 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=6.7
Q ss_pred CcccccCcc
Q psy4437 97 RTWHADCVR 105 (131)
Q Consensus 97 ~~~H~~Cf~ 105 (131)
.-||..||.
T Consensus 49 ~W~H~~Cf~ 57 (117)
T 1uw0_A 49 EWYHIKCMF 57 (117)
T ss_dssp CBCCHHHHH
T ss_pred eeECcccch
Confidence 456888886
No 132
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.02 E-value=7.6 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=17.1
Q ss_pred cccCCCcCcCCCCccCcCCee-ecccCcC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKL-FCRNDFF 57 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~-~C~~c~~ 57 (131)
+.|..|...+.+..+..=|.. +|..|..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 457777666655444344555 7877764
No 133
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=48.88 E-value=11 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=12.6
Q ss_pred CCCCCCccccCCCCccccccCCccccc
Q psy4437 62 RFPSGCGVGLSSSMLISCAGCEKPILD 88 (131)
Q Consensus 62 ~~C~~c~~~i~~~~~~~C~~C~~~I~~ 88 (131)
.+|.+|..........-|+.|+..-+.
T Consensus 16 LrC~aCf~~t~~~~k~FCp~CGn~TL~ 42 (79)
T 2con_A 16 LRCHGCFKTTSDMNRVFCGHCGNKTLK 42 (79)
T ss_dssp EECSSSCCEESCSSCCSCSSSCCSCCE
T ss_pred eEecccceECCCcccccccccCcccce
Confidence 344444444433334455555554443
No 134
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.63 E-value=9.4 Score=20.79 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=19.1
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
+.|..|...+.......=|..||..|..+
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITL 48 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHH
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHH
Confidence 67888877776543334566788777643
No 135
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=46.94 E-value=4.7 Score=19.89 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=9.7
Q ss_pred CccccCCccccCc
Q psy4437 3 ISCAGCEKPILDK 15 (131)
Q Consensus 3 ~~C~~C~~~I~~~ 15 (131)
+.|.+|++||.-.
T Consensus 18 RvC~~CgkPi~ls 30 (44)
T 2lo3_A 18 RVCEKCGKPLALT 30 (44)
T ss_dssp EECTTTCCEEETT
T ss_pred hhhcccCCcchHH
Confidence 4688999998544
No 136
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=46.70 E-value=7.4 Score=22.29 Aligned_cols=39 Identities=15% Similarity=0.473 Sum_probs=23.2
Q ss_pred cccccCCcccccceeeeecCCcccccCc--------ccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLSD 115 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 115 (131)
..|..|...+.+...+..=|..||..|. +|..|+.++..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3466665555543332245666777664 68888887764
No 137
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=46.38 E-value=6 Score=19.16 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=10.5
Q ss_pred cCCCCccccccCCccccc
Q psy4437 71 LSSSMLISCAGCEKPILD 88 (131)
Q Consensus 71 i~~~~~~~C~~C~~~I~~ 88 (131)
+.+.....|.+|++.|..
T Consensus 4 ~~~~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVPV 21 (39)
T ss_dssp --CCCEEECTTTCCEEEG
T ss_pred CCcCCCcccccccCcCCc
Confidence 344455677888777654
No 138
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=45.87 E-value=6.6 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=16.0
Q ss_pred CccccCCccccC-ceeEeec---CCccccCC
Q psy4437 3 ISCAGCEKPILD-KFLLNVL---ERTWHADC 29 (131)
Q Consensus 3 ~~C~~C~~~I~~-~~~~~~~---~~~~H~~C 29 (131)
..|..|++++.+ ...|.-. ++-||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 468888888754 3445444 45566654
No 139
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.45 E-value=9 Score=20.98 Aligned_cols=37 Identities=19% Similarity=0.590 Sum_probs=24.0
Q ss_pred cccccCCcccccceeeeecCCcccccCc--------cccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLS 114 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 114 (131)
..|..|...+.+..+ ..=+..||..|+ +|..|+.++.
T Consensus 16 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 356666666554333 455777777775 4888888875
No 140
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=45.42 E-value=8.2 Score=20.83 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcccCCCcCcCCCCccCc-CCeeecccCcCCC
Q psy4437 29 CVRCYDCHHTLSDKCFSR-EGKLFCRNDFFRS 59 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f~~-~~~~~C~~c~~~~ 59 (131)
=+.|..|...+.+..... =|..||..|..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~ 46 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTA 46 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHH
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHH
Confidence 377888877776543344 3788888886443
No 141
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=43.51 E-value=12 Score=22.23 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=14.8
Q ss_pred ccccccCCcccccceeeeecCCcc
Q psy4437 76 LISCAGCEKPILDKFLLNVLERTW 99 (131)
Q Consensus 76 ~~~C~~C~~~I~~~~~~~~~~~~~ 99 (131)
..+|+.|+.+|..-+. ...|..|
T Consensus 37 ~k~Cp~C~~~V~rVe~-~~~~~if 59 (101)
T 3vk6_A 37 DKMCPGCSDPVQRIEQ-CTRGSLF 59 (101)
T ss_dssp CCBCTTTCCBCSEEEE-EEGGGCC
T ss_pred CCCCcCcCCeeeeeEE-eccCCEE
Confidence 3578888888876555 3445553
No 142
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=42.60 E-value=5 Score=24.19 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=10.8
Q ss_pred CCCCCCCCCCccccCCCCc
Q psy4437 58 RSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 58 ~~~~~~C~~c~~~i~~~~~ 76 (131)
+.....|.+|++.|..+.+
T Consensus 16 kS~Ra~Ck~C~~kI~Kg~l 34 (111)
T 3odc_A 16 KSNRSTCKGCMEKIEKGQV 34 (111)
T ss_dssp SSSCCBCTTTCCBCCTTCE
T ss_pred ecCCccccccCCCccCCce
Confidence 3334566666666665544
No 143
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=41.86 E-value=5.3 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=32.6
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCCCC---CCCCCCCccccCCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFRSP---VRFPSGCGVGLSSS 74 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~---~~~C~~c~~~i~~~ 74 (131)
|.|..|...+.+.....-|..||..|..+.. ...|..|..++...
T Consensus 19 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 7888998888764335678889999876543 24888888877653
No 144
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=40.19 E-value=13 Score=20.51 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=7.4
Q ss_pred CCccccCCccccC
Q psy4437 2 LISCAGCEKPILD 14 (131)
Q Consensus 2 ~~~C~~C~~~I~~ 14 (131)
+.+|..||++|.+
T Consensus 4 PVRCFTCGkvi~~ 16 (70)
T 1twf_J 4 PVRCFSCGKVVGD 16 (70)
T ss_dssp CSBCTTTCCBCTT
T ss_pred CeecCCCCCChHH
Confidence 4456666666643
No 145
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=39.69 E-value=2.4 Score=21.12 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.2
Q ss_pred eeccCCeeecCCCC
Q psy4437 117 CFSREGKLFCRNDF 130 (131)
Q Consensus 117 ~~~~~g~~~C~~cy 130 (131)
|..++-+|||.+||
T Consensus 22 ~mSVnTQP~CHEC~ 35 (49)
T 2eqg_A 22 FMSVNTQPLCHECS 35 (49)
T ss_dssp BCCTTTTTSCHHHH
T ss_pred EEEecCccchHHHH
Confidence 44578888887765
No 146
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=39.47 E-value=13 Score=19.48 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=8.2
Q ss_pred CCccccCCcccc
Q psy4437 2 LISCAGCEKPIL 13 (131)
Q Consensus 2 ~~~C~~C~~~I~ 13 (131)
+.+|..||++|.
T Consensus 3 PVRCFTCGkvi~ 14 (55)
T 1ef4_A 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CeecCCCCCChh
Confidence 456777777774
No 147
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.44 E-value=9.4 Score=21.41 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=6.2
Q ss_pred cccCCCcCcCC
Q psy4437 30 VRCYDCHHTLS 40 (131)
Q Consensus 30 f~C~~C~~~l~ 40 (131)
-.|..|..+|.
T Consensus 26 r~CarC~~~LG 36 (76)
T 2csz_A 26 RTCARCQESLG 36 (76)
T ss_dssp CBCSSSCCBCS
T ss_pred cchhhhCcccc
Confidence 45566666654
No 148
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=39.25 E-value=13 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=23.6
Q ss_pred ccccCCcccccceeeeecCCcccccCc---------ccccccccccc
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADCV---------RCYDCHHTLSD 115 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 115 (131)
.|..|...+.+... ..=|..|+..|. .|..|..++..
T Consensus 54 ~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46666655554433 345666777665 78888888865
No 149
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=38.76 E-value=10 Score=21.42 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=25.0
Q ss_pred cccCCCcCcCCCCc-c--CcCCeeecccCcCC--CCCCCCCCCccccCC
Q psy4437 30 VRCYDCHHTLSDKC-F--SREGKLFCRNDFFR--SPVRFPSGCGVGLSS 73 (131)
Q Consensus 30 f~C~~C~~~l~~~~-f--~~~~~~~C~~c~~~--~~~~~C~~c~~~i~~ 73 (131)
..|..|...+.... . ..=|..||..|..+ .....|..|...+.+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 56777766654421 1 22356677766532 224578888877654
No 150
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=38.18 E-value=6.5 Score=23.27 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=27.4
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCCCC---CCCCCCCccccCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFRSP---VRFPSGCGVGLSS 73 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~~~---~~~C~~c~~~i~~ 73 (131)
+.|..|...+.+.....=|..||..|..+.. ...|..|..++..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 6788888877654334568888988864332 2345555555443
No 151
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=37.96 E-value=16 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=24.6
Q ss_pred cccccCCcccccceeeeecCCcccccC--------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADC--------VRCYDCHHTLSD 115 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~C--------f~C~~C~~~l~~ 115 (131)
..|..|...+.+...+..=|..||..| ..|..|+.++..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 356666666555433225577777777 368888888764
No 152
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.24 E-value=11 Score=18.91 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=17.6
Q ss_pred cccCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
+.|..|...+.+.....=|..||..|..+
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACITR 44 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHHH
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHHH
Confidence 56777777766533334466677776543
No 153
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.67 E-value=33 Score=18.37 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=9.6
Q ss_pred CccccccCCcccccc
Q psy4437 75 MLISCAGCEKPILDK 89 (131)
Q Consensus 75 ~~~~C~~C~~~I~~~ 89 (131)
+.++|..|+-.|+-.
T Consensus 37 ~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 37 EVIRCRECGHRVMYK 51 (63)
T ss_dssp SCCCCSSSCCCCCBC
T ss_pred CceECCCCCcEEEEE
Confidence 446777777766643
No 154
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.45 E-value=13 Score=20.20 Aligned_cols=27 Identities=26% Similarity=0.714 Sum_probs=14.7
Q ss_pred cCCCcCcCCCCccCcCCeeecccCcCC
Q psy4437 32 CYDCHHTLSDKCFSREGKLFCRNDFFR 58 (131)
Q Consensus 32 C~~C~~~l~~~~f~~~~~~~C~~c~~~ 58 (131)
|..|+..-.-+...=+|.+||..||..
T Consensus 11 C~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 11 CCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred eEEeCCCCeEEecCCCCceehHHHHHH
Confidence 344444322233344678899888853
No 155
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=35.49 E-value=16 Score=21.65 Aligned_cols=39 Identities=13% Similarity=0.345 Sum_probs=24.5
Q ss_pred cccccCCcccccceeeeecCCcccccCc---------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV---------RCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 116 (131)
..|+.|...+.+... ..=|..|+..|+ +|..|+.++...
T Consensus 19 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 356666655554433 445666777765 788888887654
No 156
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.96 E-value=15 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=24.2
Q ss_pred cCCcccCCCcCcCCCCccCcCCeeecccCcC
Q psy4437 27 ADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 57 (131)
Q Consensus 27 ~~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~ 57 (131)
++=|.|..|...+.+-.....|..||..|-.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~ 57 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIIL 57 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHH
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHH
Confidence 5679999998888775555589999988754
No 157
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.83 E-value=26 Score=18.65 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=13.4
Q ss_pred cccCCCcCcCCCCccCcCCee-ecccCcC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKL-FCRNDFF 57 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~-~C~~c~~ 57 (131)
..|..|.....+..+.-=|.. +|..|..
T Consensus 16 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp SCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred CCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 345555554444333333444 6666654
No 158
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=34.54 E-value=19 Score=19.89 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=17.7
Q ss_pred cccCCCcCcCCC--CccC--cCCeeecccCcCCC
Q psy4437 30 VRCYDCHHTLSD--KCFS--REGKLFCRNDFFRS 59 (131)
Q Consensus 30 f~C~~C~~~l~~--~~f~--~~~~~~C~~c~~~~ 59 (131)
+.|..|-.++.. ..+. .=|..+|..|..+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~ 45 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI 45 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHH
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHH
Confidence 567777777643 2221 24777888776543
No 159
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=34.18 E-value=26 Score=18.64 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=5.5
Q ss_pred ccccccccccc
Q psy4437 106 CYDCHHTLSDK 116 (131)
Q Consensus 106 C~~C~~~l~~~ 116 (131)
|+.|+++|..+
T Consensus 23 C~~CKk~lqKG 33 (62)
T 2das_A 23 CANCKKPLQKG 33 (62)
T ss_dssp CTTTCCBCCTT
T ss_pred hhhccchhhcC
Confidence 44455555444
No 160
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=33.90 E-value=5.1 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=21.1
Q ss_pred CcccCCCcCcCCCCccCc-CCeeecccCcCC
Q psy4437 29 CVRCYDCHHTLSDKCFSR-EGKLFCRNDFFR 58 (131)
Q Consensus 29 Cf~C~~C~~~l~~~~f~~-~~~~~C~~c~~~ 58 (131)
=+.|..|...+.+..... =|..||..|..+
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~ 43 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRT 43 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHH
Confidence 378888988776543344 388899888654
No 161
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=33.83 E-value=14 Score=16.20 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=10.1
Q ss_pred CCcccCCCcCcCCC
Q psy4437 28 DCVRCYDCHHTLSD 41 (131)
Q Consensus 28 ~Cf~C~~C~~~l~~ 41 (131)
+|+.|..|+..|-.
T Consensus 6 sclvcaacsvell~ 19 (31)
T 2lbz_A 6 SCLVCAACSVELLX 19 (31)
T ss_dssp GGGGGGGCCSCSGG
T ss_pred HHHHHHHhHHHHHH
Confidence 57888888776643
No 162
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.73 E-value=29 Score=18.89 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=13.4
Q ss_pred cCCcccccC-----------cccccccccccc
Q psy4437 95 LERTWHADC-----------VRCYDCHHTLSD 115 (131)
Q Consensus 95 ~~~~~H~~C-----------f~C~~C~~~l~~ 115 (131)
=|..||..| .+|..|++++..
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 455666666 467778777654
No 163
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=33.16 E-value=23 Score=17.83 Aligned_cols=10 Identities=20% Similarity=0.710 Sum_probs=6.7
Q ss_pred cccCCCcCcC
Q psy4437 30 VRCYDCHHTL 39 (131)
Q Consensus 30 f~C~~C~~~l 39 (131)
-.|..|++.|
T Consensus 15 t~C~~C~k~i 24 (49)
T 1kbe_A 15 QVCNVCQKSM 24 (49)
T ss_dssp CCCSSSCCSS
T ss_pred cCccccCcee
Confidence 4577777766
No 164
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.06 E-value=20 Score=19.46 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=5.8
Q ss_pred cCCcccCCCcCc
Q psy4437 27 ADCVRCYDCHHT 38 (131)
Q Consensus 27 ~~Cf~C~~C~~~ 38 (131)
++| .|..|++.
T Consensus 17 ~~C-~C~~C~~~ 27 (70)
T 3asl_A 17 RVC-ACHLCGGR 27 (70)
T ss_dssp TTT-SBTTTCCC
T ss_pred CCC-CCcCCCCc
Confidence 345 56666543
No 165
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.99 E-value=71 Score=21.69 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCeeecccCcCCCC----CCCCCCCccccCCCCccccccCCcccccceeeeecCCcccccCcc
Q psy4437 47 EGKLFCRNDFFRSP----VRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVR 105 (131)
Q Consensus 47 ~~~~~C~~c~~~~~----~~~C~~c~~~i~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~ 105 (131)
.+.++|..|..... .-.|..|+..-.++.+..|..|. +.||..|..
T Consensus 156 ~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~-------------~~yH~~CL~ 205 (226)
T 3ask_A 156 KSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECD-------------MAFHIYCLD 205 (226)
T ss_dssp CCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSC-------------CEECSCC--
T ss_pred cCCcccccccCCcCEecCCCCCcCCCCCCCCCCeEEcCCCC-------------cceeCccCC
Confidence 44556665532211 12456666544445555555553 457777754
No 166
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=31.68 E-value=20 Score=22.43 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=26.9
Q ss_pred cccccCCcccccceeeeecCCcccccCc---------cccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV---------RCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 116 (131)
..|..|...+.+... ..=|..|+..|. .|..|..++...
T Consensus 79 ~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 467777776665444 556777877774 688888888754
No 167
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.45 E-value=24 Score=13.61 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=7.1
Q ss_pred cccCCCcCcCCC
Q psy4437 30 VRCYDCHHTLSD 41 (131)
Q Consensus 30 f~C~~C~~~l~~ 41 (131)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 456667666544
No 168
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.44 E-value=8.9 Score=19.96 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=6.9
Q ss_pred CCeeecccCcCC
Q psy4437 47 EGKLFCRNDFFR 58 (131)
Q Consensus 47 ~~~~~C~~c~~~ 58 (131)
=|..+|..|..+
T Consensus 26 CgH~fC~~Ci~~ 37 (65)
T 1g25_A 26 CGHTLCESCVDL 37 (65)
T ss_dssp TCCCEEHHHHHH
T ss_pred CCCHhHHHHHHH
Confidence 355666666543
No 169
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.79 E-value=19 Score=14.21 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 5677888777654
No 170
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.31 E-value=49 Score=19.12 Aligned_cols=27 Identities=22% Similarity=0.605 Sum_probs=16.6
Q ss_pred CCCCCCCCccccC----CCCccccccCCccc
Q psy4437 60 PVRFPSGCGVGLS----SSMLISCAGCEKPI 86 (131)
Q Consensus 60 ~~~~C~~c~~~i~----~~~~~~C~~C~~~I 86 (131)
.++.|..|+..|. +...+.|..|+-||
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv 45 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPA 45 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChh
Confidence 4567777776553 23446677777665
No 171
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=30.10 E-value=27 Score=19.18 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=16.4
Q ss_pred ccCCCcCcCCCCccCcCCee-ecccCcCCC
Q psy4437 31 RCYDCHHTLSDKCFSREGKL-FCRNDFFRS 59 (131)
Q Consensus 31 ~C~~C~~~l~~~~f~~~~~~-~C~~c~~~~ 59 (131)
.|..|...+.+..+..=|.. +|..|..+.
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 56666655555444334555 777776543
No 172
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=29.40 E-value=24 Score=20.15 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred ccccCCcccccceeeeecCCcccccC---------ccccccccccccc
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADC---------VRCYDCHHTLSDK 116 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~C---------f~C~~C~~~l~~~ 116 (131)
.|+.|...+.+...+..=|..||..| +.|..|..++...
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45555555443222123355566555 4688888777654
No 173
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=29.23 E-value=27 Score=16.33 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=13.9
Q ss_pred ccccCCcccccceeeeecCCcccccCccc
Q psy4437 78 SCAGCEKPILDKFLLNVLERTWHADCVRC 106 (131)
Q Consensus 78 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C 106 (131)
.|..|+.|=+. + ...++.|...|-.|
T Consensus 2 lC~~C~~peT~--l-~~~~~~~~l~C~aC 27 (36)
T 1k81_A 2 ICRECGKPDTK--I-IKEGRVHLLKCMAC 27 (36)
T ss_dssp CCSSSCSCEEE--E-EEETTEEEEEEETT
T ss_pred CCcCCCCCCcE--E-EEeCCcEEEEhhcC
Confidence 46666665333 2 33566676655544
No 174
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=29.13 E-value=22 Score=20.47 Aligned_cols=32 Identities=13% Similarity=-0.051 Sum_probs=23.9
Q ss_pred cCCcccCCCcCcCCCCccCcCC-eeecccCcCC
Q psy4437 27 ADCVRCYDCHHTLSDKCFSREG-KLFCRNDFFR 58 (131)
Q Consensus 27 ~~Cf~C~~C~~~l~~~~f~~~~-~~~C~~c~~~ 58 (131)
++=|.|..|...+.+-.....| ..||..|..+
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~ 52 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIAR 52 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHH
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHH
Confidence 5569999998888775555667 9999887543
No 175
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.93 E-value=22 Score=14.16 Aligned_cols=13 Identities=15% Similarity=0.554 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 5677888777654
No 176
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.85 E-value=30 Score=19.78 Aligned_cols=6 Identities=50% Similarity=1.625 Sum_probs=2.2
Q ss_pred cccccC
Q psy4437 77 ISCAGC 82 (131)
Q Consensus 77 ~~C~~C 82 (131)
..|..|
T Consensus 32 l~CD~C 37 (92)
T 2e6r_A 32 LFCDGC 37 (92)
T ss_dssp EECTTT
T ss_pred EEcCCC
Confidence 333333
No 177
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=28.66 E-value=23 Score=19.19 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=8.2
Q ss_pred CCccccCCccccC
Q psy4437 2 LISCAGCEKPILD 14 (131)
Q Consensus 2 ~~~C~~C~~~I~~ 14 (131)
+.+|..||++|.+
T Consensus 4 PVRCFTCGkvi~~ 16 (66)
T 4ayb_N 4 PIRCFTCGSLIAD 16 (66)
T ss_dssp CSBCTTTCCBCHH
T ss_pred CcccCCCcHhHHH
Confidence 4567777777643
No 178
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.28 E-value=8.4 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=20.0
Q ss_pred CCcccCCCcCcCCCCccCcCCeeecccCcCCC
Q psy4437 28 DCVRCYDCHHTLSDKCFSREGKLFCRNDFFRS 59 (131)
Q Consensus 28 ~Cf~C~~C~~~l~~~~f~~~~~~~C~~c~~~~ 59 (131)
.=.+|+.|+...... |+++|..|+.+.
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~~~ 188 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQGGS 188 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHTTC
T ss_pred CCEECCcCCCChhhC-----CCcCCccccCCC
Confidence 446799998766543 888999998654
No 179
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=27.99 E-value=61 Score=16.63 Aligned_cols=6 Identities=50% Similarity=1.492 Sum_probs=2.7
Q ss_pred ccccCc
Q psy4437 99 WHADCV 104 (131)
Q Consensus 99 ~H~~Cf 104 (131)
||..|.
T Consensus 27 fH~~Cl 32 (60)
T 2puy_A 27 YHLDCL 32 (60)
T ss_dssp ECGGGS
T ss_pred EECCcC
Confidence 444443
No 180
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.99 E-value=28 Score=19.97 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=4.4
Q ss_pred CCcccccCcc
Q psy4437 96 ERTWHADCVR 105 (131)
Q Consensus 96 ~~~~H~~Cf~ 105 (131)
++.||..|++
T Consensus 36 ~RvfH~~CL~ 45 (89)
T 1wil_A 36 TRVFHDGCLR 45 (89)
T ss_dssp SSCCCHHHHH
T ss_pred cccccHhhcc
Confidence 3444444443
No 181
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=27.48 E-value=25 Score=22.12 Aligned_cols=39 Identities=21% Similarity=0.527 Sum_probs=25.2
Q ss_pred cccccCCcccccceeeeecCCcccccCc---------ccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV---------RCYDCHHTLSD 115 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf---------~C~~C~~~l~~ 115 (131)
..|+.|...+.+...+..=|..||..|+ .|..|..++..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4677777766654332245777777764 48888888753
No 182
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.44 E-value=17 Score=14.32 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=7.9
Q ss_pred cccccccccccc
Q psy4437 104 VRCYDCHHTLSD 115 (131)
Q Consensus 104 f~C~~C~~~l~~ 115 (131)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 567777776654
No 183
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.96 E-value=16 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=11.8
Q ss_pred cCCCCCCCCCCCccccCCCCc
Q psy4437 56 FFRSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 56 ~~~~~~~~C~~c~~~i~~~~~ 76 (131)
|-+.....|..|++.|..+.+
T Consensus 22 YAKSgRA~CK~C~~kI~KgeL 42 (134)
T 2cs2_A 22 YAKSNRSTCKGCMEKIEKGQV 42 (134)
T ss_dssp ECSSSCCBCSSSCCBCCTTSE
T ss_pred EeCCCCccchhcCCcccCCCe
Confidence 444444566666666665544
No 184
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=26.70 E-value=13 Score=25.30 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=12.8
Q ss_pred cCCCCCCCCCCCccccCCCCc
Q psy4437 56 FFRSPVRFPSGCGVGLSSSML 76 (131)
Q Consensus 56 ~~~~~~~~C~~c~~~i~~~~~ 76 (131)
|-+.....|..|++.|..+++
T Consensus 34 yAkS~RA~Ck~Ck~kI~Kg~L 54 (223)
T 4av1_A 34 YAKSGRASCKKCSESIPKDSL 54 (223)
T ss_dssp ECSSTTCBCTTTCCBCCTTCE
T ss_pred EecCCCccCcccCCccCCCce
Confidence 444445567777777766554
No 185
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.63 E-value=25 Score=13.68 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=8.2
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 4677777766543
No 186
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.53 E-value=36 Score=18.85 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=7.8
Q ss_pred ccCCcccCCCcCcC
Q psy4437 26 HADCVRCYDCHHTL 39 (131)
Q Consensus 26 H~~Cf~C~~C~~~l 39 (131)
=++| .|..|+..-
T Consensus 24 C~~C-~C~vC~~~~ 36 (77)
T 3shb_A 24 CRVC-ACHLCGGRQ 36 (77)
T ss_dssp CTTT-SBTTTCCCS
T ss_pred CCCC-cCCccCCCC
Confidence 3556 677776543
No 187
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=26.46 E-value=3.3 Score=22.81 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=10.4
Q ss_pred ccccCCc-ccCCCcCcCC
Q psy4437 24 TWHADCV-RCYDCHHTLS 40 (131)
Q Consensus 24 ~~H~~Cf-~C~~C~~~l~ 40 (131)
..|.+=+ .|..|...+.
T Consensus 19 ~~H~~~~~~C~~CH~~~~ 36 (72)
T 3h4n_A 19 KKHAGVKGECKACHETEA 36 (72)
T ss_dssp GGGSSCTTGGGGTSSSTT
T ss_pred HHHhhhcCChhhhcCCCc
Confidence 3455433 6888877665
No 188
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=26.11 E-value=46 Score=17.36 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=4.4
Q ss_pred ccccCCcc
Q psy4437 4 SCAGCEKP 11 (131)
Q Consensus 4 ~C~~C~~~ 11 (131)
.|..|+..
T Consensus 8 ~C~vC~~~ 15 (66)
T 2yt5_A 8 VCTICQEE 15 (66)
T ss_dssp CBSSSCCC
T ss_pred CCCCCCCC
Confidence 45566554
No 189
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.83 E-value=67 Score=16.12 Aligned_cols=10 Identities=30% Similarity=0.756 Sum_probs=4.6
Q ss_pred cccccCCccc
Q psy4437 77 ISCAGCEKPI 86 (131)
Q Consensus 77 ~~C~~C~~~I 86 (131)
+.|+-|+-.|
T Consensus 24 IrCpyCGyri 33 (48)
T 4ayb_P 24 VRCPYCGYKI 33 (48)
T ss_dssp SCCTTTCCSC
T ss_pred cccCccCcEE
Confidence 3454454444
No 190
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.73 E-value=14 Score=14.37 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=8.8
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5677787776654
No 191
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.79 E-value=27 Score=13.74 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=8.8
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 5677777777654
No 192
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=25.65 E-value=29 Score=17.19 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=2.9
Q ss_pred cccCCcc
Q psy4437 5 CAGCEKP 11 (131)
Q Consensus 5 C~~C~~~ 11 (131)
|..|++.
T Consensus 17 C~~C~~~ 23 (52)
T 1faq_A 17 CDICQKF 23 (52)
T ss_dssp CTTSSSE
T ss_pred CCCcccc
Confidence 4444443
No 193
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=25.58 E-value=16 Score=20.41 Aligned_cols=38 Identities=5% Similarity=-0.117 Sum_probs=24.6
Q ss_pred cccccCCcccccceeeeecCCcccccCc--------ccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCV--------RCYDCHHTLSD 115 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 115 (131)
..|+-|.....+..+ ..-|.+|-..|. +|..|+.+|..
T Consensus 15 ~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred eECcccCchhcCCeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 578888777666555 556777777776 35555555543
No 194
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.02 E-value=32 Score=23.55 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=5.8
Q ss_pred cccccCCcccc
Q psy4437 77 ISCAGCEKPIL 87 (131)
Q Consensus 77 ~~C~~C~~~I~ 87 (131)
+.|+.|+..++
T Consensus 223 v~Cp~CgRIL~ 233 (256)
T 3na7_A 223 ITCPYCGRILY 233 (256)
T ss_dssp EECTTTCCEEE
T ss_pred EECCCCCeeEE
Confidence 45555555544
No 195
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.59 E-value=52 Score=17.74 Aligned_cols=12 Identities=17% Similarity=0.598 Sum_probs=8.3
Q ss_pred ccccccCCcccc
Q psy4437 76 LISCAGCEKPIL 87 (131)
Q Consensus 76 ~~~C~~C~~~I~ 87 (131)
...|+.|+.++.
T Consensus 10 iL~CP~ck~~L~ 21 (67)
T 2jny_A 10 VLACPKDKGPLR 21 (67)
T ss_dssp CCBCTTTCCBCE
T ss_pred HhCCCCCCCcCe
Confidence 357888887654
No 196
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.31 E-value=63 Score=17.89 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=5.8
Q ss_pred cccccCCccc
Q psy4437 77 ISCAGCEKPI 86 (131)
Q Consensus 77 ~~C~~C~~~I 86 (131)
.+|..|++.+
T Consensus 26 ~RC~~C~kkv 35 (74)
T 1wfp_A 26 TRCLSCNKKV 35 (74)
T ss_dssp CBCSSSCCBC
T ss_pred ccchhhcCcc
Confidence 4566666554
No 197
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.26 E-value=21 Score=14.07 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 4 YSCSVCGKRFSLK 16 (28)
T ss_dssp EECSSSCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5677777766543
No 198
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.11 E-value=59 Score=17.89 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=6.3
Q ss_pred CccccCCcccc
Q psy4437 3 ISCAGCEKPIL 13 (131)
Q Consensus 3 ~~C~~C~~~I~ 13 (131)
..|..|.....
T Consensus 16 ~~C~IC~~~~~ 26 (80)
T 2d8s_A 16 DICRICHCEGD 26 (80)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCeEcCcccc
Confidence 35666765553
No 199
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.06 E-value=22 Score=14.04 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 5677777776554
No 200
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.04 E-value=51 Score=16.21 Aligned_cols=13 Identities=15% Similarity=0.649 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
+.|..|+..+...
T Consensus 25 lvC~~CG~v~~e~ 37 (50)
T 1pft_A 25 IVCAKCGYVIEEN 37 (50)
T ss_dssp EEESSSCCBCCCC
T ss_pred EECcccCCccccc
Confidence 5688888777654
No 201
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.99 E-value=46 Score=19.51 Aligned_cols=50 Identities=12% Similarity=0.376 Sum_probs=29.1
Q ss_pred CccccCCccccC-ceeEeec---CCccccCCcccCCCcCcCCCCcc-----CcCCeeecccCcCCC
Q psy4437 3 ISCAGCEKPILD-KFLLNVL---ERTWHADCVRCYDCHHTLSDKCF-----SREGKLFCRNDFFRS 59 (131)
Q Consensus 3 ~~C~~C~~~I~~-~~~~~~~---~~~~H~~Cf~C~~C~~~l~~~~f-----~~~~~~~C~~c~~~~ 59 (131)
-.|..|+++..+ +..|.-. +.-||..|. .|+...+ ..+++.+|..|..+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC-------CcCHHHHHhhccCCCCCEECccccCcC
Confidence 468999999743 3445444 456777662 3433222 134677888876543
No 202
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.82 E-value=21 Score=14.00 Aligned_cols=13 Identities=15% Similarity=0.800 Sum_probs=8.2
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 3 LKCRECGKQFTTS 15 (29)
T ss_dssp EECTTTSCEESCH
T ss_pred ccCCCCCCccCCh
Confidence 5677777766543
No 203
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.64 E-value=55 Score=17.66 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=7.6
Q ss_pred cccccCCcccc
Q psy4437 77 ISCAGCEKPIL 87 (131)
Q Consensus 77 ~~C~~C~~~I~ 87 (131)
..|+.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 46888887654
No 204
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.28 E-value=32 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=12.9
Q ss_pred CCCCCCCccccCCC-CccccccCCccc
Q psy4437 61 VRFPSGCGVGLSSS-MLISCAGCEKPI 86 (131)
Q Consensus 61 ~~~C~~c~~~i~~~-~~~~C~~C~~~I 86 (131)
.-+|.+|++..... ....|+.|+.++
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 34555555544321 123566666654
No 205
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=22.96 E-value=48 Score=17.90 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.8
Q ss_pred ccccCCccccc
Q psy4437 78 SCAGCEKPILD 88 (131)
Q Consensus 78 ~C~~C~~~I~~ 88 (131)
.|+-|+.+|.+
T Consensus 5 ~C~Fcg~~IyP 15 (66)
T 1vq8_U 5 ECDYCGTDIEP 15 (66)
T ss_dssp BCTTTCCBCCS
T ss_pred EecCcCCcccC
Confidence 45555555554
No 206
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.79 E-value=58 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=19.3
Q ss_pred cccCCCcCcCCCCccCcCCee-ecccCcCCC
Q psy4437 30 VRCYDCHHTLSDKCFSREGKL-FCRNDFFRS 59 (131)
Q Consensus 30 f~C~~C~~~l~~~~f~~~~~~-~C~~c~~~~ 59 (131)
+.|..|...+.+..+..=|.. +|..|..+.
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSL 326 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence 677888777665444334555 888887643
No 207
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.67 E-value=60 Score=17.53 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=8.4
Q ss_pred ccccccCCcccc
Q psy4437 76 LISCAGCEKPIL 87 (131)
Q Consensus 76 ~~~C~~C~~~I~ 87 (131)
...|+.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2jr6_A 8 ILVCPVTKGRLE 19 (68)
T ss_dssp CCBCSSSCCBCE
T ss_pred heECCCCCCcCe
Confidence 357888887654
No 208
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.43 E-value=56 Score=17.76 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=8.5
Q ss_pred ccccccCCcccc
Q psy4437 76 LISCAGCEKPIL 87 (131)
Q Consensus 76 ~~~C~~C~~~I~ 87 (131)
...|+.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (70)
T 2js4_A 8 ILVCPVCKGRLE 19 (70)
T ss_dssp CCBCTTTCCBEE
T ss_pred heECCCCCCcCE
Confidence 357888888654
No 209
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=22.29 E-value=56 Score=20.54 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=26.1
Q ss_pred ccCCCcCcCCCCccC--cCCeeecccCcCC-CCCCCCCCCccccCCCCccccccCCc
Q psy4437 31 RCYDCHHTLSDKCFS--REGKLFCRNDFFR-SPVRFPSGCGVGLSSSMLISCAGCEK 84 (131)
Q Consensus 31 ~C~~C~~~l~~~~f~--~~~~~~C~~c~~~-~~~~~C~~c~~~i~~~~~~~C~~C~~ 84 (131)
.|..|...+.+..+. ....+.|..|... ..+..|..|+..+.. ..|..|+.
T Consensus 38 ~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~~f~~---Y~C~~C~l 91 (143)
T 2dkt_A 38 TCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGE---YYCSICHL 91 (143)
T ss_dssp SSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSSSCCBSCS---EECSSSCC
T ss_pred chhhhhccccccccchhccceeeecccCccccccCcCCCCCcccee---eEeceeec
Confidence 344555555443332 2345677777543 334566666655543 34555543
No 210
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.23 E-value=39 Score=17.55 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=5.6
Q ss_pred CcccccCcc
Q psy4437 97 RTWHADCVR 105 (131)
Q Consensus 97 ~~~H~~Cf~ 105 (131)
..||..|..
T Consensus 33 ~wfH~~Cvg 41 (59)
T 3c6w_A 33 EWFHFACVD 41 (59)
T ss_dssp CEEETGGGT
T ss_pred CCEecccCC
Confidence 456777654
No 211
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.23 E-value=63 Score=15.84 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.8
Q ss_pred CCCCccccCCCCccccccCC
Q psy4437 64 PSGCGVGLSSSMLISCAGCE 83 (131)
Q Consensus 64 C~~c~~~i~~~~~~~C~~C~ 83 (131)
|..|+++-.++.+..|..|.
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~ 22 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECN 22 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTC
T ss_pred CCCCCCCCCCCCEEECCCCC
Confidence 44555443344455565553
No 212
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.02 E-value=24 Score=13.90 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=8.5
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 4 ~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 4 YQCDYCGRSFSDP 16 (30)
T ss_dssp EECTTTCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5677777776543
No 213
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.83 E-value=52 Score=17.77 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=6.5
Q ss_pred cccccCCccccc
Q psy4437 77 ISCAGCEKPILD 88 (131)
Q Consensus 77 ~~C~~C~~~I~~ 88 (131)
..|.-|+.+|.+
T Consensus 5 ~~C~Fcg~~IyP 16 (66)
T 3j21_V 5 NVCSYCGKPFEP 16 (66)
T ss_dssp CBCTTTCSBCCT
T ss_pred eEecCcCCcccC
Confidence 345556665554
No 214
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.73 E-value=46 Score=18.64 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=20.5
Q ss_pred CCccccCCcccCCCcC-cCCCCcc---CcCC---eeecccCcCC
Q psy4437 22 ERTWHADCVRCYDCHH-TLSDKCF---SREG---KLFCRNDFFR 58 (131)
Q Consensus 22 ~~~~H~~Cf~C~~C~~-~l~~~~f---~~~~---~~~C~~c~~~ 58 (131)
...+|.. +.|..|++ ++.+..| .=.+ --+|..||..
T Consensus 15 ~~~~H~~-~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 15 GFVQHVG-FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp TSCEESS-CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred cCCeeCc-CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 4456664 78888885 5666444 1112 4466666654
No 215
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.72 E-value=34 Score=14.58 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 12 ~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 12 FQCPDCDRSFSRS 24 (37)
T ss_dssp BCCTTTCCCBSSH
T ss_pred ccCCCCCcccCcH
Confidence 6788888777654
No 216
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.68 E-value=36 Score=18.21 Aligned_cols=7 Identities=29% Similarity=1.265 Sum_probs=2.8
Q ss_pred ccccccC
Q psy4437 76 LISCAGC 82 (131)
Q Consensus 76 ~~~C~~C 82 (131)
+..|..|
T Consensus 24 ll~Cd~C 30 (66)
T 2lri_C 24 VLRCTHC 30 (66)
T ss_dssp CEECSSS
T ss_pred EEECCCC
Confidence 3344444
No 217
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.55 E-value=21 Score=14.12 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=8.0
Q ss_pred cccccccccccc
Q psy4437 104 VRCYDCHHTLSD 115 (131)
Q Consensus 104 f~C~~C~~~l~~ 115 (131)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 567777776654
No 218
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.72 E-value=20 Score=14.28 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=9.2
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 5778888777654
No 219
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=37 Score=14.28 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 10 ~~C~~C~k~f~~~ 22 (36)
T 2elr_A 10 HLCDMCGKKFKSK 22 (36)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eecCcCCCCcCch
Confidence 6788888777654
No 220
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=24 Score=20.05 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=15.7
Q ss_pred cccccCCcccccceeeee-cCCcccccCc
Q psy4437 77 ISCAGCEKPILDKFLLNV-LERTWHADCV 104 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~-~~~~~H~~Cf 104 (131)
..|+.|..++.+..+ .. -|.+|-..|.
T Consensus 8 ~~CPI~~~~~~dPV~-~~~cGh~f~r~cI 35 (94)
T 2yu4_A 8 FTCPITKEEMKKPVK-NKVCGHTYEEDAI 35 (94)
T ss_dssp CBCTTTCSBCSSEEE-ESSSCCEEEHHHH
T ss_pred eECcCcCchhcCCEE-cCCCCCeecHHHH
Confidence 567777776665443 42 5666655444
No 221
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.32 E-value=38 Score=14.22 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=9.2
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~F~~~ 15 (33)
T 1rim_A 3 FACPECPKRFMRS 15 (33)
T ss_dssp CCCSSSCCCCSSH
T ss_pred ccCCCCCchhCCH
Confidence 5677888777654
No 222
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=36 Score=17.23 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=18.3
Q ss_pred cccccCCcccccceeeeecCCcccccCccccccccccccc
Q psy4437 77 ISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK 116 (131)
Q Consensus 77 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~ 116 (131)
..|..|++.......+.. ..=|.|..|++.+...
T Consensus 19 ~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCC
T ss_pred eeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCH
Confidence 345555554443322222 3347788888777654
No 223
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.21 E-value=86 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=6.6
Q ss_pred cccccCCccc
Q psy4437 77 ISCAGCEKPI 86 (131)
Q Consensus 77 ~~C~~C~~~I 86 (131)
.+|..|++.+
T Consensus 16 ~rC~~C~kkv 25 (64)
T 1wfh_A 16 NRCTVCRKRV 25 (64)
T ss_dssp CCCTTTCCCC
T ss_pred CcChhhCCcc
Confidence 5677777754
No 224
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.42 E-value=22 Score=14.13 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=9.2
Q ss_pred ccccccccccccc
Q psy4437 104 VRCYDCHHTLSDK 116 (131)
Q Consensus 104 f~C~~C~~~l~~~ 116 (131)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 5678888777654
Done!