RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4437
(131 letters)
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 93.1 bits (231), Expect = 3e-25
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+ RF
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK---RF- 118
Query: 65 SGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK---CFSR 120
CA C+ I + + + +H C C C L+
Sbjct: 119 -----------GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME 167
Query: 121 EGKLFCRNDF 130
+ +L C+ D+
Sbjct: 168 DSRLVCKADY 177
Score = 72.6 bits (178), Expect = 3e-17
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 31 RCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKF 90
R + ++ G + CAGC++ ILD+F
Sbjct: 30 RLENTQFDAANGIDDEGGSGGHMGSGGTPEIP---------------MCAGCDQHILDRF 74
Query: 91 LLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 75 ILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF 115
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 92.2 bits (229), Expect = 5e-25
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 19/130 (14%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF+ RF
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK---RFG 65
Query: 65 SGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK---CFSR 120
+ CA C+ I + + + +H C C C L+
Sbjct: 66 T------------KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLME 113
Query: 121 EGKLFCRNDF 130
+ +L C+ D+
Sbjct: 114 DSRLVCKADY 123
Score = 71.0 bits (174), Expect = 1e-16
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
S+ + CAGC++ ILD+F+L L+R WH+ C++C DCH L+++CFSR ++C++DFF
Sbjct: 2 STPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF 61
Score = 42.5 bits (100), Expect = 5e-06
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 20/106 (18%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK---CFSREGKLFCRNDFFRSP 60
CA C+ I + + + +H C C C L+ + +L C+ D+
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY---- 123
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRC 106
++ G + H ++
Sbjct: 124 -----------ETAKQGGSGGSGGSGGGTP-MVAASPERHDGGLQA 157
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 91.0 bits (226), Expect = 6e-25
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 2 LISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+ R
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 59 SPVRFPSGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--D 115
F CA C+K I + + V ++ +H +C +C C D
Sbjct: 62 ---LF----------GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGD 108
Query: 116 KCFSREGKLFCRNDFF 131
+ + C D +
Sbjct: 109 RYLLINSDIVCEQDIY 124
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 87.0 bits (215), Expect = 1e-22
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSP 60
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 61 VRFPSGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKC 117
+C+ C + I + ++ +H C C C + L D+
Sbjct: 67 GNSG-------------ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRF 113
Query: 118 FSREGKLFCRNDF 130
G LFC +D
Sbjct: 114 HYINGSLFCEHDR 126
Score = 62.0 bits (150), Expect = 4e-13
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Score = 41.2 bits (96), Expect = 2e-05
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSREGKLFCRNDFFRSPV 61
C+ C + I + ++ +H C C C + L D+ G LFC +D + +
Sbjct: 72 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI 131
Query: 62 RFPSGCGVGLSSS 74
G S
Sbjct: 132 NGHLNSGGSGGSG 144
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 78.6 bits (194), Expect = 4e-20
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 20/132 (15%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
CAGC++ I + WH C+DC L+ + + K C+ + +
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK----- 60
Query: 64 PSGCGVGLSSSMLISCAGCEKPILDKFL-LNVLERTWHA--DCVRCYDCHHTLSDKCF-S 119
+ + C GC I + + +WHA +C C C L + F
Sbjct: 61 ----------NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 110
Query: 120 REGKLFCRNDFF 131
EG +FC +
Sbjct: 111 VEGMVFCSVECK 122
Score = 37.4 bits (87), Expect = 2e-04
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 5 CAGCEKPILDKFL-LNVLERTWHA--DCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58
C GC I + + +WHA +C C C L + F EG +FC + +
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 72.1 bits (177), Expect = 5e-18
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFP 64
CAGC++ I L L++ WH C +C C L+ + S++G +C +D+ +F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHA---QFG 74
Query: 65 SGCGVG 70
SG G
Sbjct: 75 SGPSSG 80
Score = 70.2 bits (172), Expect = 2e-17
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFF 131
CAGC++ I L L++ WH C +C C L+ + S++G +C +D+
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYH 70
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 71.3 bits (174), Expect = 2e-17
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFR 58
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120
Score = 70.9 bits (173), Expect = 4e-17
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 59 SPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD--- 115
SG +G CAGC I D+FLL ++ WH+ C++C C L D
Sbjct: 44 KLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGT 103
Query: 116 KCFSREGKLFCRNDFF 131
+++ G + CRND+
Sbjct: 104 SSYTKSGMILCRNDYI 119
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 66.7 bits (163), Expect = 1e-15
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVR 62
C C KPI D ++ R WH C RC C H L+++ F +++ K+ C R
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---- 63
Query: 63 FPSGCGVGLSSSMLISCAGCEKPIL-DKFLLNVLERTWHADCVRCYDC 109
C GC K I+ + WH DC
Sbjct: 64 -----------EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 54.7 bits (132), Expect = 4e-11
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFF 131
C C KPI D ++ R WH C RC C H L+++ F +++ K+ C
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT 62
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 66.2 bits (161), Expect = 2e-15
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 57
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
Query: 58 RSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL 113
R +G + ++ + L E + + +
Sbjct: 62 RLGGSGGHM------------GSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 105
Score = 62.0 bits (150), Expect = 8e-14
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 75 MLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
L++C GC++ I D++ L +++ WH DC+ C C L + + + + G+ CR D+
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 65.0 bits (158), Expect = 7e-15
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFFRSP 60
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+ R
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR-- 64
Query: 61 VRFPSGC 67
F +
Sbjct: 65 -LFGNSG 70
Score = 63.1 bits (153), Expect = 4e-14
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDFF 131
CAGC I D+FLL ++ WH+ C++C C L D +++ G + CRND+
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 63.5 bits (154), Expect = 1e-13
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 35/161 (21%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF------- 56
C C+K + + ++H C C C L +++C++ +
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 69
Query: 57 --------------------------FRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKF 90
P+ + C C + +
Sbjct: 70 GKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE 129
Query: 91 LLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130
+ ++WH C RC C +L ++G+++C+ +
Sbjct: 130 KVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCY 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 57.4 bits (139), Expect = 2e-12
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS--REGKLFCRNDFFRSPVR 62
CA C +PILD+ L + + +H C C CH L F+ ++ C DF R +
Sbjct: 18 CATCSQPILDRIL-RAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHR---K 73
Query: 63 FPSGCGVG 70
F SG G
Sbjct: 74 FASGPSSG 81
Score = 56.2 bits (136), Expect = 7e-12
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFS--REGKLFCRNDFF 131
CA C +PILD+ L + + +H C C CH L F+ ++ C DF
Sbjct: 18 CATCSQPILDRIL-RAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFH 71
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 56.3 bits (136), Expect = 6e-12
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREGKLFCRNDFFR 58
C C I+ F+ + +R H +C C DC L K F E +++C
Sbjct: 18 CDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71
Score = 55.5 bits (134), Expect = 1e-11
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKC-FSREGKLFCRNDF 130
++ L C C I+ F+ + +R H +C C DC L K F E +++C
Sbjct: 11 NAQKLPMCDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHA 69
Query: 131 F 131
Sbjct: 70 R 70
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 53.3 bits (128), Expect = 1e-10
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58
C C I+ + ++ H +C C DC+ L K + EG+L+C
Sbjct: 28 CDKCGSGIVGAVV-KARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARA 81
Score = 53.3 bits (128), Expect = 1e-10
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 72 SSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
S+ + C C I+ + ++ H +C C DC+ L K + EG+L+C
Sbjct: 21 SAQRMPLCDKCGSGIVGAVV-KARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHA 79
Query: 131 F 131
Sbjct: 80 R 80
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 52.3 bits (126), Expect = 2e-10
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
C GC +P+L+ +L + ++ WH +C C DC + S F +G+ FC + R
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHH---RR 73
Query: 64 PSGCGVG 70
SG G
Sbjct: 74 GSGPSSG 80
Score = 50.4 bits (121), Expect = 1e-09
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFF 131
C GC +P+L+ +L + ++ WH +C C DC + S F +G+ FC +
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYH 70
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 52.0 bits (124), Expect = 9e-10
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSREGKLFCRNDFFRSPV 61
CA C+K I + + V ++ +H +C +C C S D+ + C D +
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70
Query: 62 RFPSGCGVGLSSSMLISCAGCEKP 85
G G S ++
Sbjct: 71 INGGSGGSGGSGGDVMVVGEPTLM 94
Score = 48.5 bits (115), Expect = 1e-08
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLS--DKCFSREGKLFCRNDF 130
CA C+K I + + V ++ +H +C +C C S D+ + C D
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDI 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 50.5 bits (121), Expect = 1e-09
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58
C C + + + R++H C C C L + +++C++ + +
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64
Score = 49.7 bits (119), Expect = 2e-09
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C + + + R++H C C C L + +++C++ +
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCY 62
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 49.8 bits (119), Expect = 2e-09
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 5 CAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVR 62
CA C++ I D L +R +H C RC C +L+D+ F ++ +L C + +
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCS---A 74
Query: 63 FPSGCGVG 70
F SG G
Sbjct: 75 FSSGPSSG 82
Score = 48.6 bits (116), Expect = 7e-09
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 79 CAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFF 131
CA C++ I D L +R +H C RC C +L+D+ F ++ +L C + +
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYC 72
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 49.4 bits (118), Expect = 3e-09
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
CA C + I FL L ++WH + C C +T++ F +G L+C + + F
Sbjct: 28 CAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK---FF 83
Query: 64 PSGCGVG 70
SG G
Sbjct: 84 ASGPSSG 90
Score = 47.8 bits (114), Expect = 1e-08
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
CA C + I FL L ++WH + C C +T++ F +G L+C +
Sbjct: 28 CAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 48.5 bits (116), Expect = 6e-09
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58
C C+KPI + E+ WH +C C C LS + F +R+ +C N F
Sbjct: 8 CVQCKKPITTGGV-TYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61
Score = 48.1 bits (115), Expect = 6e-09
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C+KPI + E+ WH +C C C LS + F +R+ +C N F
Sbjct: 8 CVQCKKPITTGGV-TYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 46.1 bits (110), Expect = 4e-08
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 56
C C +PI + + N + + WH + C C R+G +C +
Sbjct: 8 CGACRRPIEGRVV-NAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Score = 46.1 bits (110), Expect = 4e-08
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C +PI + + N + + WH + C C R+G +C +
Sbjct: 8 CGACRRPIEGRVV-NAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 46.6 bits (111), Expect = 4e-08
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFR 58
CA C K + + ++ WH +C+ C C L+ + F SR+ +C F
Sbjct: 18 CARCSKTLTQGGV-TYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGE 71
Score = 46.2 bits (110), Expect = 5e-08
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
CA C K + + ++ WH +C+ C C L+ + F SR+ +C F
Sbjct: 18 CARCSKTLTQGGV-TYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACF 69
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 45.6 bits (108), Expect = 6e-08
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 5 CAGCEKPILDKF---LLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 56
CAGC PI ++ ER WH DC C C +L + F + + C +
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63
Score = 45.6 bits (108), Expect = 6e-08
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 79 CAGCEKPILDKF---LLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
CAGC PI ++ ER WH DC C C +L + F + + C +
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 45.4 bits (108), Expect = 8e-08
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVR 62
C+ C + ++ L +TWH C C C L + F +G +C + +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN---K 64
Query: 63 FPSGCGVG 70
F SG G
Sbjct: 65 FASGPSSG 72
Score = 44.7 bits (106), Expect = 2e-07
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C+ C + ++ L +TWH C C C L + F +G +C +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 45.5 bits (108), Expect = 9e-08
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVR 62
C C+K I+ + +WH C C+ C + K F ++ + FC + + +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK---Q 64
Query: 63 FPSGCGVG 70
SG G
Sbjct: 65 HASGPSSG 72
Score = 44.3 bits (105), Expect = 2e-07
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C+K I+ + +WH C C+ C + K F ++ + FC +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 45.0 bits (107), Expect = 1e-07
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFFRSPVRF 63
C C+K + + L + WH C++C C TL S EGK +C + + + F
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSA--MF 60
Query: 64 -PSGCGVGLSSS 74
P G G G + S
Sbjct: 61 GPKGFGRGGAES 72
Score = 43.5 bits (103), Expect = 4e-07
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFF 131
C C+K + + L + WH C++C C TL S EGK +C + +
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 56
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 44.7 bits (106), Expect = 2e-07
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 56
C C K I + ++ WHADC C C L+ + F + E + +C + +
Sbjct: 8 CVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Score = 44.7 bits (106), Expect = 2e-07
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C K I + ++ WHADC C C L+ + F + E + +C + +
Sbjct: 8 CVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 44.3 bits (105), Expect = 2e-07
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVRF 63
C C + I+ + + + +WH +C RC C L+D F G+ CR R
Sbjct: 8 CHQCGEFIIGRVI-KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR---EK 63
Query: 64 PSGCGVG 70
SG G
Sbjct: 64 ASGPSSG 70
Score = 44.0 bits (104), Expect = 3e-07
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C + I+ + + + +WH +C RC C L+D F G+ CR
Sbjct: 8 CHQCGEFIIGRVI-KAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH 59
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 44.1 bits (104), Expect = 3e-07
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 5 CAGCEKPILDKF---LLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRN 54
C C KPI + + WH++C C C +L K F ++ ++FC+
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Score = 44.1 bits (104), Expect = 3e-07
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 79 CAGCEKPILDKF---LLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRN 128
C C KPI + + WH++C C C +L K F ++ ++FC+
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 44.0 bits (104), Expect = 3e-07
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 56
C C I ++ L+ +H D C +C L+ +G+L+C
Sbjct: 18 CQKCHAIIDEQPLI-FKNDPYHPDHFNCANCGKELTADARELKGELYCLPCH 68
Score = 44.0 bits (104), Expect = 3e-07
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130
C C I ++ L+ +H D C +C L+ +G+L+C
Sbjct: 18 CQKCHAIIDEQPLI-FKNDPYHPDHFNCANCGKELTADARELKGELYCLPCH 68
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 44.1 bits (104), Expect = 4e-07
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 56
C C+K + L ++ +H C RC C++ LS S G+++C+ F
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70
Score = 44.1 bits (104), Expect = 4e-07
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130
C C+K + L ++ +H C RC C++ LS S G+++C+ F
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 43.2 bits (102), Expect = 6e-07
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 5 CAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDFFRSPVR 62
C GC + ++ + L+R +H C C C L + F + E + +C + +
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67
Query: 63 FPSGCG 68
G
Sbjct: 68 -GPSSG 72
Score = 42.8 bits (101), Expect = 8e-07
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 73 SSMLISCAGCEKPILDK-FLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
SS C GC + ++ + L+R +H C C C L + F + E + +C +
Sbjct: 2 SSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Query: 131 F 131
Sbjct: 62 V 62
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 42.8 bits (101), Expect = 8e-07
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 68 GVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFC 126
G SS M C C+K + ++ L + WH C++C C TL +GK FC
Sbjct: 1 GSSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
Query: 127 RNDFF 131
+
Sbjct: 61 HKPCY 65
Score = 42.0 bits (99), Expect = 2e-06
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTL-SDKCFSREGKLFCRNDFF 57
C C+K + ++ L + WH C++C C TL +GK FC +
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCY 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 42.8 bits (101), Expect = 9e-07
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 CAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 56
C C+ + ++N +H C C C + F EG+ +C +DF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Score = 42.8 bits (101), Expect = 9e-07
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPI-LDKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C+ + ++N +H C C C + F EG+ +C +DF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 40.5 bits (95), Expect = 7e-06
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 56
C C+ + ++N +H C C C + F EG+ +C +DF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Score = 40.5 bits (95), Expect = 7e-06
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDKCF-SREGKLFCRNDF 130
C C+ + ++N +H C C C + F EG+ +C +DF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 40.4 bits (95), Expect = 8e-06
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 5 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDFFRSPVR 62
C GC K I+ + WH DC C +C + F + +C +
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHET---K 74
Query: 63 FPSGCGVG 70
F SG G
Sbjct: 75 FASGPSSG 82
Score = 40.4 bits (95), Expect = 9e-06
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 79 CAGCEKPIL-DKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130
C GC K I+ + WH DC C +C + F + +C
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCH 71
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 40.3 bits (94), Expect = 8e-06
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDF 56
CA C + + L V +H C RC+ C TL + +G +C
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
Score = 40.3 bits (94), Expect = 8e-06
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD---KCFSREGKLFCRNDF 130
CA C + + L V +H C RC+ C TL + +G +C
Sbjct: 18 CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 39.8 bits (93), Expect = 1e-05
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 5 CAGCEKPIL----DKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 56
CAGC+ PI ++ ++WH C C C L++K + +++C +
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74
Score = 39.8 bits (93), Expect = 1e-05
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 79 CAGCEKPIL----DKFLLNVLERTWHADCVRCYDCHHTLSDK-CFSREGKLFCRNDF 130
CAGC+ PI ++ ++WH C C C L++K + +++C +
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 39.0 bits (91), Expect = 3e-05
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF--SREGKLFCRNDFFRSPVR 62
C C++ I + + + L +T+H DC C C + C+ V
Sbjct: 18 CFSCDQFIEGEVV-SALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76
Query: 63 FPS 65
PS
Sbjct: 77 GPS 79
Score = 38.6 bits (90), Expect = 3e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDKCF--SREGKLFCRN 128
C C++ I + + + L +T+H DC C C + C+
Sbjct: 18 CFSCDQFIEGEVV-SALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 37.8 bits (88), Expect = 7e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 19/86 (22%)
Query: 48 GKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCY 107
D++ +F C GC + F+ E +H +C C
Sbjct: 2 SSGSSGKDYWG---KFG------------EFCHGCSLLMTGPFM-VAGEFKYHPECFACM 45
Query: 108 DCHHTLSDK---CFSREGKLFCRNDF 130
C + D + L+C
Sbjct: 46 SCKVIIEDGDAYALVQHATLYCGKCH 71
Score = 37.5 bits (87), Expect = 1e-04
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSDK---CFSREGKLFCRNDF 56
C GC + F+ E +H +C C C + D + L+C
Sbjct: 18 CHGCSLLMTGPFM-VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCH 71
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 32.9 bits (75), Expect = 0.004
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 5 CAGCEKPI-LDKFLLNVLERTWHA--DCVRCYDCHHTLSDKCF-SREGKLFC 52
C GC I + + +WHA +C C C L + F EG +FC
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 32.9 bits (75), Expect = 0.004
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 79 CAGCEKPI-LDKFLLNVLERTWHA--DCVRCYDCHHTLSDKCF-SREGKLFC 126
C GC I + + +WHA +C C C L + F EG +FC
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 32.4 bits (73), Expect = 0.007
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 73 SSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD 115
SS C CEK I + L E+ +H C C C ++
Sbjct: 2 SSGSSGCDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAE 43
Score = 32.0 bits (72), Expect = 0.010
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHTLSD 41
C CEK I + L E+ +H C C C ++
Sbjct: 7 GCDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAE 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.23
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 40 SDKCFSREGKLFCRNDFF---RSPVRFPSGC------------GVGLSSSMLISCAGCEK 84
S + F + FF R +P+ G+ S ML S + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQ 346
Query: 85 PILDKFL 91
+ ++
Sbjct: 347 EQVQDYV 353
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 57 FRSPVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLER----TWHADCVRCYDCHHT 112
RS ++ +G GL +++ I+ + F ++V + + VRCY+ +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSW----ESFFVSVRKAITVLFFIG--VRCYEAYPN 316
Query: 113 LS 114
S
Sbjct: 317 TS 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.7
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 33/110 (30%)
Query: 3 ISCAGCEKPILDKFLLNVLERTWH-ADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
++ C P + +L +L++ + D H+ + K + R +S
Sbjct: 187 LNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSK- 241
Query: 62 RFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYD--C 109
+ + L+ +L NV +A ++ C
Sbjct: 242 PYENC---------LL--------VLL----NV----QNAKAWNAFNLSC 266
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 49 KLFCRNDFFRSPVRFPSGCGVGLS 72
++ R F+R P + +G G+GLS
Sbjct: 164 RIGER--FYRPPGQTATGSGLGLS 185
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Length = 317
Score = 26.8 bits (58), Expect = 2.7
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 24 TWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCE 83
++ + + D HT + + + P+ G+ SSS L +
Sbjct: 62 QFYINGILQNDEEHTKISAIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKAC 121
Query: 84 KPILDKFL----LNVLERTWHADCVRC 106
+ D L L + R
Sbjct: 122 DQLFDTQLDQKALAQKAKFASGSSSRS 148
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 26.4 bits (58), Expect = 2.8
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 12 ILDKFLLNVLERT-WHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPV 61
+ +L RC C + G+L C P
Sbjct: 132 VALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALPPY 182
Score = 25.6 bits (56), Expect = 6.2
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 86 ILDKFLLNVLERT-WHADCVRCYDCHHTLSDKCFSREGKLFCRNDF 130
+ +L RC C + G+L C
Sbjct: 132 VALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCA 177
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 24.2 bits (52), Expect = 3.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADC 29
M +CA C K + +N L++ WH C
Sbjct: 2 MNPNCARCGKIVYPTEKVNCLDKFWHKAC 30
Score = 24.2 bits (52), Expect = 3.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 75 MLISCAGCEKPILDKFLLNVLERTWHADC 103
M +CA C K + +N L++ WH C
Sbjct: 2 MNPNCARCGKIVYPTEKVNCLDKFWHKAC 30
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 25.9 bits (55), Expect = 5.6
Identities = 10/88 (11%), Positives = 17/88 (19%), Gaps = 12/88 (13%)
Query: 23 RTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGC 82
++ D + K E L + C C
Sbjct: 101 NLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKE------------VGCIDC 148
Query: 83 EKPILDKFLLNVLERTWHADCVRCYDCH 110
+ K + + C CH
Sbjct: 149 HVDVNKKDKADHTKDIRMPTADTCGTCH 176
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 25.6 bits (55), Expect = 6.5
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 17/109 (15%)
Query: 28 DCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCGVGLSSSMLISCAGCEKPIL 87
CV C + L +C C ++ + C +
Sbjct: 224 KCVAC--RNFYLDGRCVET-----CPPPYYHFQDWRCVNFSFC--QDLHHKCKNSRRQGC 274
Query: 88 DKFLLNVLER--------TWHADCVRCYDCHHTLSDKCFSREGKLFCRN 128
+++++ + T ++ + C C C EG+ +
Sbjct: 275 HQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.144 0.517
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,056,313
Number of extensions: 110032
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 148
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.4 bits)