RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4437
(131 letters)
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 48.2 bits (115), Expect = 9e-10
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADC 29
L++C GC++ I D++ L +++ WH DC
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
Score = 48.2 bits (115), Expect = 9e-10
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 75 MLISCAGCEKPILDKFLLNVLERTWHADC 103
L++C GC++ I D++ L +++ WH DC
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 44.7 bits (106), Expect = 2e-08
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADCV 30
CAGC I D+FLL ++ WH+ C+
Sbjct: 5 CAGCGGKIADRFLLYAMDSYWHSRCL 30
Score = 44.7 bits (106), Expect = 2e-08
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADCV 104
CAGC I D+FLL ++ WH+ C+
Sbjct: 5 CAGCGGKIADRFLLYAMDSYWHSRCL 30
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 31.6 bits (72), Expect = 0.003
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 66 GCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADC 103
+ CA C + I F L L ++WH +
Sbjct: 8 RAEHIPAGKRTPMCAHCNQVIRGPF-LVALGKSWHPEE 44
Score = 30.9 bits (70), Expect = 0.005
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADC 29
CA C + I F L L ++WH +
Sbjct: 21 CAHCNQVIRGPF-LVALGKSWHPEE 44
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 29.3 bits (66), Expect = 0.015
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHAD 28
C C +PI + ++N + + WH +
Sbjct: 8 CGACRRPIEGR-VVNAMGKQWHVE 30
Score = 29.3 bits (66), Expect = 0.015
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 79 CAGCEKPILDKFLLNVLERTWHAD 102
C C +PI + ++N + + WH +
Sbjct: 8 CGACRRPIEGR-VVNAMGKQWHVE 30
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.7 bits (62), Expect = 0.058
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADC 29
C GC +P+L+ + L+ ++ WH +C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34
Score = 27.7 bits (62), Expect = 0.058
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADC 103
C GC +P+L+ + L+ ++ WH +C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 26.0 bits (57), Expect = 0.29
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 SCAGCEKPILDKFLLNVLERTWHADC 29
CAGC++ I L L++ WH C
Sbjct: 10 HCAGCKEEIKHGQSLLALDKQWHVSC 35
Score = 26.0 bits (57), Expect = 0.29
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 78 SCAGCEKPILDKFLLNVLERTWHADC 103
CAGC++ I L L++ WH C
Sbjct: 10 HCAGCKEEIKHGQSLLALDKQWHVSC 35
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 25.5 bits (56), Expect = 0.55
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 31 RCYDCHHTL-SDKCFSREGKLFCRNDFFRSPVRF-PSGCGVGLSSSML 76
RC C +L S ++G+++C+ + + F P G G G + L
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCYAK---NFGPKGFGFGQGAGAL 45
Score = 24.7 bits (54), Expect = 1.3
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 105 RCYDCHHTL-SDKCFSREGKLFCRNDF 130
RC C +L S ++G+++C+ +
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCY 27
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 26.5 bits (57), Expect = 1.2
Identities = 12/113 (10%), Positives = 20/113 (17%), Gaps = 13/113 (11%)
Query: 4 SCAGCEKP----ILDKFLLNVLERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRS 59
C C + + + ++ D + K E L
Sbjct: 78 DCVECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEK 137
Query: 60 PVRFPSGCGVGLSSSMLISCAGCEKPILDKFLLNVLERTWHADCVRCYDCHHT 112
GC I C + C C+
Sbjct: 138 ETLKEVGC---------IDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFA 181
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 23.3 bits (50), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 MLISCAGCEKPILDKFLLNVLERTWHADC 29
M +CA C K + +N L++ WH C
Sbjct: 1 MNPNCARCGKIVYPTEKVNCLDKFWHKAC 29
Score = 23.3 bits (50), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 75 MLISCAGCEKPILDKFLLNVLERTWHADC 103
M +CA C K + +N L++ WH C
Sbjct: 1 MNPNCARCGKIVYPTEKVNCLDKFWHKAC 29
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.1 bits (47), Expect = 5.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 5 CAGCEKPIL---DKFLLNVLERTWHADC 29
CAGC PI ++ ER WH DC
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDC 28
Score = 22.1 bits (47), Expect = 5.8
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 79 CAGCEKPIL---DKFLLNVLERTWHADC 103
CAGC PI ++ ER WH DC
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDC 28
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.4 bits (48), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 5 CAGCEKPILDKFLLNVLERTWHADC 29
CA C +PILD+ +L + + +H C
Sbjct: 11 CATCSQPILDR-ILRAMGKAYHPGC 34
Score = 22.4 bits (48), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 79 CAGCEKPILDKFLLNVLERTWHADC 103
CA C +PILD+ +L + + +H C
Sbjct: 11 CATCSQPILDR-ILRAMGKAYHPGC 34
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 23.9 bits (51), Expect = 6.4
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 12 ILDKFLLNVLERT-WHADCVRCYDCHHTLSDKCFSREGKLFCRN 54
+ +L RC C + G+L C
Sbjct: 52 VALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSK 95
Score = 23.9 bits (51), Expect = 6.4
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 86 ILDKFLLNVLERT-WHADCVRCYDCHHTLSDKCFSREGKLFCRN 128
+ +L RC C + G+L C
Sbjct: 52 VALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSK 95
>g1gg6.1 b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(ogen) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 238
Score = 23.9 bits (50), Expect = 8.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 21 LERTWHADCVRCYDCHHTLSDKCFSREGKLFCRNDFFRSPVRFPSGCG--VGLSSSMLIS 78
L + +C + + + C G C D V +G VG+ S S
Sbjct: 153 LPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWG-SS 211
Query: 79 CAGCEKP 85
P
Sbjct: 212 TCSTSTP 218
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
transactivation domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 239
Score = 23.7 bits (51), Expect = 9.2
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 25 WHADCVRCYDCHHTLSDK-CFSREGKLFCRNDFFRSPVRFPSGCG 68
W + H + +EG +F F + F G G
Sbjct: 105 WAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSG 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.144 0.517
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,552
Number of extensions: 25279
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 89
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)