Query psy444
Match_columns 495
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 17:04:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 97.5 0.052 1.1E-06 54.9 23.6 22 317-338 437-458 (880)
2 PRK02224 chromosome segregatio 96.8 0.51 1.1E-05 47.9 22.6 33 271-303 517-549 (880)
3 PRK03918 chromosome segregatio 96.6 0.44 9.4E-06 48.0 20.6 14 315-328 682-695 (880)
4 PRK01156 chromosome segregatio 96.3 1.6 3.4E-05 44.9 24.2 48 310-358 427-479 (895)
5 TIGR02169 SMC_prok_A chromosom 96.3 0.53 1.2E-05 47.6 19.1 15 363-377 998-1012(1164)
6 TIGR00606 rad50 rad50. This fa 96.3 0.56 1.2E-05 51.0 20.2 50 314-363 1048-1099(1311)
7 TIGR02169 SMC_prok_A chromosom 96.2 1.6 3.4E-05 44.3 22.9 13 315-327 953-965 (1164)
8 COG1196 Smc Chromosome segrega 96.0 1.3 2.8E-05 47.7 21.0 144 234-384 855-1010(1163)
9 TIGR02168 SMC_prok_B chromosom 95.6 2.8 6E-05 42.1 21.1 20 40-59 146-165 (1179)
10 TIGR00606 rad50 rad50. This fa 95.3 5 0.00011 43.9 22.6 40 314-353 823-862 (1311)
11 PF07888 CALCOCO1: Calcium bin 94.9 0.68 1.5E-05 48.2 14.2 242 192-456 144-392 (546)
12 PF10174 Cast: RIM-binding pro 94.8 2.9 6.3E-05 44.9 18.9 124 150-278 296-427 (775)
13 PRK03918 chromosome segregatio 94.4 6.4 0.00014 39.9 25.1 9 434-442 686-694 (880)
14 KOG0994|consensus 93.8 5.6 0.00012 45.8 18.9 147 70-216 1450-1605(1758)
15 COG1196 Smc Chromosome segrega 93.5 13 0.00027 40.5 20.6 90 241-331 396-485 (1163)
16 PRK04778 septation ring format 90.8 20 0.00043 36.2 18.0 74 81-154 116-192 (569)
17 PRK01156 chromosome segregatio 90.2 25 0.00054 36.4 27.4 18 25-42 184-201 (895)
18 KOG0161|consensus 88.7 60 0.0013 38.7 23.1 57 52-115 953-1012(1930)
19 PRK11637 AmiB activator; Provi 88.4 24 0.00053 33.9 17.1 50 315-364 186-235 (428)
20 KOG0161|consensus 88.3 64 0.0014 38.5 21.7 49 309-357 1121-1169(1930)
21 TIGR03185 DNA_S_dndD DNA sulfu 85.0 36 0.00077 34.6 14.8 39 243-281 377-416 (650)
22 PF05667 DUF812: Protein of un 84.0 41 0.00089 35.3 15.0 141 215-374 420-567 (594)
23 PHA02562 46 endonuclease subun 82.4 48 0.001 31.8 19.0 25 126-150 233-257 (562)
24 COG0419 SbcC ATPase involved i 82.0 73 0.0016 33.7 26.8 35 65-99 405-439 (908)
25 PF07412 Geminin: Geminin; In 81.2 2 4.4E-05 40.1 4.1 57 323-383 118-174 (200)
26 PF05667 DUF812: Protein of un 81.2 23 0.0005 37.0 12.0 148 219-384 333-484 (594)
27 COG0419 SbcC ATPase involved i 81.0 79 0.0017 33.4 23.0 27 12-38 272-298 (908)
28 KOG0250|consensus 80.6 1.1E+02 0.0024 34.9 18.1 103 269-382 832-951 (1074)
29 PF00038 Filament: Intermediat 78.8 49 0.0011 29.8 13.6 42 62-103 53-94 (312)
30 KOG0995|consensus 78.8 99 0.0021 33.2 18.4 223 10-254 155-386 (581)
31 KOG4674|consensus 78.6 1.6E+02 0.0034 35.4 21.6 129 267-404 1444-1581(1822)
32 cd00176 SPEC Spectrin repeats, 78.5 30 0.00064 27.0 11.8 138 234-376 32-174 (213)
33 PF09726 Macoilin: Transmembra 77.9 65 0.0014 34.4 14.3 52 194-251 608-659 (697)
34 COG5185 HEC1 Protein involved 76.0 59 0.0013 34.9 13.1 166 91-279 256-433 (622)
35 PF15066 CAGE1: Cancer-associa 73.1 24 0.00053 37.3 9.5 121 8-164 346-469 (527)
36 COG4942 Membrane-bound metallo 72.5 61 0.0013 33.3 12.0 59 317-375 158-216 (420)
37 PF12128 DUF3584: Protein of u 71.9 1.6E+02 0.0036 32.4 24.6 80 205-286 621-701 (1201)
38 PF15233 SYCE1: Synaptonemal c 71.3 19 0.0004 32.6 7.2 57 273-332 2-60 (134)
39 PF10174 Cast: RIM-binding pro 70.5 1.7E+02 0.0037 32.0 24.8 38 312-356 561-598 (775)
40 KOG4673|consensus 69.3 97 0.0021 34.7 13.2 228 86-333 348-625 (961)
41 PF06008 Laminin_I: Laminin Do 68.6 91 0.002 28.2 11.1 115 176-304 129-243 (264)
42 PF08580 KAR9: Yeast cortical 67.6 35 0.00076 36.2 9.4 153 191-377 130-288 (683)
43 KOG0978|consensus 66.8 94 0.002 33.9 12.4 216 144-364 400-644 (698)
44 PF06160 EzrA: Septation ring 63.7 1.8E+02 0.0038 29.7 14.6 37 86-122 210-246 (560)
45 KOG0249|consensus 61.8 52 0.0011 36.6 9.5 193 215-428 85-283 (916)
46 PF08317 Spc7: Spc7 kinetochor 61.0 1.5E+02 0.0033 28.0 14.4 32 182-213 105-136 (325)
47 PF12128 DUF3584: Protein of u 57.6 3E+02 0.0066 30.4 20.2 85 178-262 845-929 (1201)
48 PF15290 Syntaphilin: Golgi-lo 57.2 13 0.00028 37.1 3.8 44 314-359 90-135 (305)
49 PF05622 HOOK: HOOK protein; 56.3 3.7 8E-05 42.2 0.0 73 241-313 575-658 (713)
50 KOG4674|consensus 56.1 4.4E+02 0.0095 31.9 19.1 278 27-329 1028-1362(1822)
51 PF14931 IFT20: Intraflagellar 55.5 1E+02 0.0022 26.5 8.6 87 233-331 14-112 (120)
52 PF00038 Filament: Intermediat 55.3 1.6E+02 0.0035 26.5 17.0 98 36-137 52-152 (312)
53 smart00150 SPEC Spectrin repea 54.9 61 0.0013 22.7 6.1 37 235-271 31-67 (101)
54 PF05622 HOOK: HOOK protein; 53.3 4.4 9.6E-05 41.6 0.0 42 243-284 482-523 (713)
55 TIGR03495 phage_LysB phage lys 51.8 35 0.00076 30.1 5.3 66 40-105 38-103 (135)
56 PF03999 MAP65_ASE1: Microtubu 50.6 13 0.00029 37.9 2.9 145 244-388 216-373 (619)
57 KOG0976|consensus 50.1 4.6E+02 0.0099 30.3 19.4 165 125-308 132-308 (1265)
58 KOG0244|consensus 48.8 83 0.0018 35.3 8.6 121 219-361 472-592 (913)
59 KOG4593|consensus 48.7 4.2E+02 0.009 29.4 16.6 42 40-81 131-172 (716)
60 COG1340 Uncharacterized archae 47.6 3E+02 0.0064 27.4 14.1 234 202-442 3-249 (294)
61 PF00435 Spectrin: Spectrin re 47.0 97 0.0021 21.6 7.1 40 232-271 31-70 (105)
62 KOG0996|consensus 46.1 5.6E+02 0.012 30.1 17.3 108 368-486 1045-1158(1293)
63 PRK09039 hypothetical protein; 45.8 1.7E+02 0.0036 28.3 9.3 149 312-491 52-208 (343)
64 PF04849 HAP1_N: HAP1 N-termin 45.1 84 0.0018 31.2 7.2 91 219-325 211-302 (306)
65 cd00890 Prefoldin Prefoldin is 44.0 58 0.0012 25.5 5.0 40 121-160 81-120 (129)
66 KOG0612|consensus 44.0 6.1E+02 0.013 29.9 15.7 23 436-458 694-716 (1317)
67 KOG0250|consensus 43.8 5.7E+02 0.012 29.6 14.1 109 220-329 280-388 (1074)
68 PF10046 BLOC1_2: Biogenesis o 43.2 32 0.00068 27.8 3.4 54 223-276 26-79 (99)
69 KOG0976|consensus 43.1 5.8E+02 0.013 29.5 19.3 65 12-83 185-252 (1265)
70 PF08614 ATG16: Autophagy prot 41.9 76 0.0016 27.8 5.9 97 207-312 90-186 (194)
71 PF07200 Mod_r: Modifier of ru 41.1 2E+02 0.0044 23.7 9.1 64 26-100 22-85 (150)
72 PF15070 GOLGA2L5: Putative go 40.6 4.8E+02 0.01 27.8 17.0 103 178-293 88-190 (617)
73 PF08317 Spc7: Spc7 kinetochor 40.5 3.2E+02 0.007 25.8 13.8 38 267-304 153-190 (325)
74 PF12718 Tropomyosin_1: Tropom 40.2 1.1E+02 0.0024 26.4 6.5 53 315-367 16-68 (143)
75 KOG0243|consensus 40.2 6.3E+02 0.014 29.1 16.0 69 238-306 627-697 (1041)
76 cd08915 V_Alix_like Protein-in 39.7 3.2E+02 0.0069 25.5 11.7 150 245-445 129-278 (342)
77 PF08614 ATG16: Autophagy prot 37.6 1.4E+02 0.003 26.2 6.8 102 154-272 80-181 (194)
78 KOG0018|consensus 37.1 7.3E+02 0.016 28.9 18.4 111 179-289 312-449 (1141)
79 KOG0018|consensus 37.0 7.4E+02 0.016 28.9 16.0 22 90-111 193-214 (1141)
80 PF14662 CCDC155: Coiled-coil 36.9 1.7E+02 0.0036 27.7 7.6 93 64-160 44-156 (193)
81 PF07426 Dynactin_p22: Dynacti 36.6 3.2E+02 0.0069 24.6 9.1 86 234-334 32-118 (174)
82 COG1579 Zn-ribbon protein, pos 34.6 2.2E+02 0.0048 27.2 8.1 25 344-371 145-169 (239)
83 PF01765 RRF: Ribosome recycli 34.5 2.7E+02 0.0059 24.0 8.0 65 37-107 88-156 (165)
84 PRK04778 septation ring format 34.4 5.1E+02 0.011 26.3 20.7 51 86-136 214-265 (569)
85 PF08581 Tup_N: Tup N-terminal 33.2 41 0.00088 27.3 2.6 21 110-130 47-67 (79)
86 PF13863 DUF4200: Domain of un 32.4 2.1E+02 0.0046 22.7 6.6 61 315-378 41-108 (126)
87 PF07888 CALCOCO1: Calcium bin 32.2 6.6E+02 0.014 26.9 18.6 22 76-97 135-156 (546)
88 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.6 1.6E+02 0.0035 24.5 6.0 40 76-115 23-62 (132)
89 PF07200 Mod_r: Modifier of ru 31.1 82 0.0018 26.0 4.2 50 256-305 34-83 (150)
90 PF09726 Macoilin: Transmembra 31.0 3.8E+02 0.0083 28.8 9.9 125 207-331 469-612 (697)
91 PF04156 IncA: IncA protein; 31.0 2.2E+02 0.0047 24.1 6.8 13 220-232 87-99 (191)
92 PF15146 FANCAA: Fanconi anemi 30.7 61 0.0013 33.7 4.0 36 240-275 4-42 (435)
93 PF10146 zf-C4H2: Zinc finger- 30.6 1.7E+02 0.0036 27.5 6.5 65 293-358 34-98 (230)
94 PF10504 DUF2452: Protein of u 29.9 1.1E+02 0.0025 28.1 5.2 48 57-105 23-73 (159)
95 KOG0962|consensus 29.2 1E+03 0.022 28.1 15.2 326 15-358 252-655 (1294)
96 PF05557 MAD: Mitotic checkpoi 29.0 26 0.00056 36.2 1.0 21 21-41 410-430 (722)
97 PRK13182 racA polar chromosome 28.7 92 0.002 28.0 4.3 59 270-333 85-145 (175)
98 PRK03947 prefoldin subunit alp 28.6 2.1E+02 0.0045 23.5 6.1 13 62-74 5-17 (140)
99 KOG2273|consensus 27.9 5.9E+02 0.013 25.0 16.8 109 171-282 267-382 (503)
100 PF04508 Pox_A_type_inc: Viral 27.5 36 0.00078 23.0 1.2 17 430-446 3-19 (23)
101 TIGR03185 DNA_S_dndD DNA sulfu 27.0 7E+02 0.015 25.5 17.8 14 220-233 404-417 (650)
102 PF00261 Tropomyosin: Tropomyo 26.3 4.9E+02 0.011 23.5 13.4 223 124-377 5-237 (237)
103 PRK00578 prfB peptide chain re 25.9 3.9E+02 0.0085 26.8 8.5 94 291-401 7-104 (367)
104 PF15450 DUF4631: Domain of un 25.6 5.4E+02 0.012 27.7 9.8 75 265-352 414-488 (531)
105 PF14073 Cep57_CLD: Centrosome 25.3 4.7E+02 0.01 24.4 8.3 45 285-337 114-158 (178)
106 smart00503 SynN Syntaxin N-ter 25.2 3.1E+02 0.0067 20.9 7.9 21 83-103 88-108 (117)
107 PF14916 CCDC92: Coiled-coil d 24.4 37 0.00081 26.9 0.9 28 150-177 23-50 (60)
108 PF10211 Ax_dynein_light: Axon 24.1 5.1E+02 0.011 23.2 8.2 11 177-187 33-43 (189)
109 PF05557 MAD: Mitotic checkpoi 23.9 1.1E+02 0.0025 31.5 4.6 64 242-305 503-580 (722)
110 PRK04863 mukB cell division pr 23.6 1.2E+03 0.027 27.3 15.2 9 371-379 536-544 (1486)
111 PF05130 FlgN: FlgN protein; 22.8 3.5E+02 0.0075 20.5 7.2 39 233-271 82-120 (143)
112 smart00503 SynN Syntaxin N-ter 22.7 1.5E+02 0.0032 22.7 3.9 8 353-360 98-105 (117)
113 PF01576 Myosin_tail_1: Myosin 22.0 30 0.00065 37.1 0.0 58 54-111 262-319 (859)
114 PF11559 ADIP: Afadin- and alp 21.6 4.7E+02 0.01 21.7 7.5 16 343-358 135-150 (151)
115 cd00179 SynN Syntaxin N-termin 21.5 4.3E+02 0.0093 21.2 9.3 28 241-268 43-70 (151)
116 PF09602 PhaP_Bmeg: Polyhydrox 21.0 6.1E+02 0.013 23.6 8.1 47 258-304 80-127 (165)
117 PF12325 TMF_TATA_bd: TATA ele 20.7 3.6E+02 0.0077 23.3 6.2 49 82-130 66-117 (120)
118 PF13166 AAA_13: AAA domain 20.6 6.7E+02 0.015 25.1 9.0 8 78-85 257-264 (712)
119 PF14662 CCDC155: Coiled-coil 20.4 4.1E+02 0.0089 25.2 7.0 33 119-151 135-168 (193)
120 smart00787 Spc7 Spc7 kinetocho 20.4 73 0.0016 30.8 2.2 75 391-465 181-255 (312)
121 PF10212 TTKRSYEDQ: Predicted 20.3 4.1E+02 0.0089 28.3 7.7 44 122-169 284-330 (518)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=97.50 E-value=0.052 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhc
Q psy444 317 EMREEIKRLEEVLKENECERAG 338 (495)
Q Consensus 317 emreeikrleevlkenecerag 338 (495)
..+..|..++..|.++.|.-.|
T Consensus 437 ~~~~~l~~~~~~l~~~~Cp~C~ 458 (880)
T PRK02224 437 TARERVEEAEALLEAGKCPECG 458 (880)
T ss_pred HHHHHHHHHHHHHhcccCCCCC
Confidence 3444444555455566665555
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=96.78 E-value=0.51 Score=47.90 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=13.5
Q ss_pred hhhccccchhhhccchhhchHHhhhhHHHHHHH
Q psy444 271 RLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL 303 (495)
Q Consensus 271 rlnsveprievltkdiqikteklhklaeeheel 303 (495)
+++.++..++-....+....+++..+-++.+++
T Consensus 517 ~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444443
No 3
>PRK03918 chromosome segregation protein; Provisional
Probab=96.62 E-value=0.44 Score=48.01 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=5.6
Q ss_pred cHHHHHHHHHHHHH
Q psy444 315 LDEMREEIKRLEEV 328 (495)
Q Consensus 315 ldemreeikrleev 328 (495)
++.+...|..+++-
T Consensus 682 ~~~l~~~i~~l~~~ 695 (880)
T PRK03918 682 LEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 4
>PRK01156 chromosome segregation protein; Provisional
Probab=96.33 E-value=1.6 Score=44.94 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=21.4
Q ss_pred ccccccHHHHHHHHHHHHHhh----hhhhhhhcc-chhhhcchHHHHHHHHhhh
Q psy444 310 EKKLELDEMREEIKRLEEVLK----ENECERAGL-LTKEKRKDEEIKRLKEEIG 358 (495)
Q Consensus 310 ekkleldemreeikrleevlk----eneceragl-ltkekrkdeeikrlkeeig 358 (495)
+-.-+..+++.+|..|..++. ++-|.+.|= ++ +..+.+=|+.+..+|.
T Consensus 427 ~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~ 479 (895)
T PRK01156 427 SLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG-EEKSNHIINHYNEKKS 479 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC-hhhHHHHHHHHHHHHH
Confidence 333344555666555555433 344544432 22 3333333444444443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.30 E-value=0.53 Score=47.58 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=5.6
Q ss_pred HHHhHHHHHHHHHHH
Q psy444 363 LVQERDQLANMLEEY 377 (495)
Q Consensus 363 lvqerdqlanmleey 377 (495)
+...++.|..+++..
T Consensus 998 l~~~~~~l~~~i~~l 1012 (1164)
T TIGR02169 998 LEEERKAILERIEEY 1012 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=0.56 Score=51.00 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhh--hhhhHH
Q psy444 314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI--GKYKML 363 (495)
Q Consensus 314 eldemreeikrleevlkeneceraglltkekrkdeeikrlkeei--gkykml 363 (495)
..+.+..+...+.+-+..-...++++...-++.+..|..|+.++ ..|+..
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a 1099 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 34677777777877777778889999988889999999999998 456643
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.25 E-value=1.6 Score=44.26 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=6.6
Q ss_pred cHHHHHHHHHHHH
Q psy444 315 LDEMREEIKRLEE 327 (495)
Q Consensus 315 ldemreeikrlee 327 (495)
+.+++.++.+++.
T Consensus 953 ~~~l~~~l~~l~~ 965 (1164)
T TIGR02169 953 LEDVQAELQRVEE 965 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.95 E-value=1.3 Score=47.72 Aligned_cols=144 Identities=26% Similarity=0.391 Sum_probs=78.4
Q ss_pred chHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhh-----
Q psy444 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRR----- 308 (495)
Q Consensus 234 ddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrr----- 308 (495)
...+......+..+-.++.+-+..++.+-..-+++-..+..++-.+.-+...++...++++.+......+-....
T Consensus 855 ~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 934 (1163)
T COG1196 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444555555555566666666666666666666666666666666666666654333322211111
Q ss_pred --hccccccH-HHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHH----HHHHhhhhhhHHHHhHHHHHHHHHHHHhcc
Q psy444 309 --NEKKLELD-EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIK----RLKEEIGKYKMLVQERDQLANMLEEYKQNA 381 (495)
Q Consensus 309 --nekkleld-emreeikrleevlkeneceraglltkekrkdeeik----rlkeeigkykmlvqerdqlanmleeykqna 381 (495)
.+-...+. +.+..|++++.- ++.-|.+. .+.-++.. |+.+--.+|.-+.+.++.|-++++++++..
T Consensus 935 ~~~~~~~~~~~~~~~~i~~le~~-----i~~lg~VN--~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 935 LEEEYEDTLETELEREIERLEEE-----IEALGPVN--LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred hccccccchhHHHHHHHHHHHHH-----HHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 455566665543 45555554 33334443 444444566778888888888888888776
Q ss_pred ccc
Q psy444 382 KDV 384 (495)
Q Consensus 382 kdv 384 (495)
+++
T Consensus 1008 ~~~ 1010 (1163)
T COG1196 1008 RER 1010 (1163)
T ss_pred HHH
Confidence 654
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.65 E-value=2.8 Score=42.11 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=9.0
Q ss_pred HHHHhccchhHHHHHHHhhc
Q psy444 40 LRETMKQKDDKLLELAKTAR 59 (495)
Q Consensus 40 lretmkqkddkllelaktar 59 (495)
+...+..+...++++-..+-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 146 ISEIIEAKPEERRAIFEEAA 165 (1179)
T ss_pred HHHHHcCCHHHHHHHHHHHc
Confidence 33434334445555544443
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=5 Score=43.89 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHH
Q psy444 314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRL 353 (495)
Q Consensus 314 eldemreeikrleevlkeneceraglltkekrkdeeikrl 353 (495)
.++++..+|..++.-+..-.-+...+...-.....+|.+|
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655555544443333333333334444555555
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.93 E-value=0.68 Score=48.23 Aligned_cols=242 Identities=28% Similarity=0.394 Sum_probs=114.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 192 YIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 192 yietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
=++...++++.=.+.+..|++++..+ .+++++|-.+.-|.-.+.. +|.+.......+...+...+..|-..
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l--~~~v~~l~~eL~~~~ee~e-------~L~~~~kel~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQL--REEVERLEAELEQEEEEME-------QLKQQQKELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777888888553 4556666554444333333 33333323333333444444444444
Q ss_pred hhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHH
Q psy444 272 LNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIK 351 (495)
Q Consensus 272 lnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeik 351 (495)
+....-||.-|-.||..-+.+... .+.+..... +.+.++..+..+.+ .-|++..-+....++.-.+...+..
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E----~e~~~~~lk-~~~~elEq~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e 286 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKE----QEKELDKLK-ELKAELEQLEAELK---QRLKETVVQLKQEETQAQQLQQENE 286 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 444444444455555444444311 111111111 11222222222222 2222222222233333445566777
Q ss_pred HHHHhhhhhhHHHHhHHHHHHHHHHHHhccccceeeccccchhhhhhhhhcchhhh-hccccccchhh------hhhHHH
Q psy444 352 RLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAE-KIKLRDSELDK------KHEVIA 424 (495)
Q Consensus 352 rlkeeigkykmlvqerdqlanmleeykqnakdvvyyedmkdkleveldklrmesae-kiklrdseldk------khevia 424 (495)
.|++++-.-.-.++.-.|-+.+|..=...+ + .+.|+.-.+|-..|.+.|. +++|-|..+.- ...-..
T Consensus 287 ~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~---~---~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~ 360 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQQEAELLRKELSDA---V---NVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQ 360 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788777766555554444444443322111 1 2346666677777766443 22233322221 112223
Q ss_pred HhhhcchhhcchhhhHHHHHhhccccccccch
Q psy444 425 EMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456 (495)
Q Consensus 425 emklsmeannrriqdleeqlaennawineqdl 456 (495)
.+..++++--++|++|...+-.-+-|..+.--
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~ 392 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEEHLQEERM 392 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777899888887766667755433
No 12
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.83 E-value=2.9 Score=44.92 Aligned_cols=124 Identities=27% Similarity=0.316 Sum_probs=83.8
Q ss_pred hccchhHHhhhhhhhcccccchhccc-chHHHHHHHHhhcchhHHHHHHhhhhhhhh-------HHHHHHHHhhhhcchh
Q psy444 150 VSRKDAEIEKLSKENEKLSMDLVFKE-NQEVTELMKEVDKKDNYIETLLKENEANVK-------LCKELEKQVHELNINK 221 (495)
Q Consensus 150 vsrkdaeieklskeneklsmdlvfke-nqevtelmkevdkkdnyietllkeneanvk-------lckelekqvhelnink 221 (495)
+||+++||..++.+.+.+.- +|.+ -+-+.-|--.+-.+.+-.+.|-.++++=-. .|....+++. -.+.
T Consensus 296 L~rk~~E~~~~qt~l~~~~~--~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~--~~qe 371 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEE--QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE--KLQE 371 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 67888888888877664321 1111 122222333445555555666655554211 1222222222 2567
Q ss_pred hhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccc
Q psy444 222 ELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPR 278 (495)
Q Consensus 222 eldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvepr 278 (495)
|..++.-||-+..|.++.--.+|..|-..|-+-++..+.==++-.++.+||+| .|.
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d 427 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QAD 427 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 88899999999999999999999999999999999998888888999999998 664
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=94.43 E-value=6.4 Score=39.85 Aligned_cols=9 Identities=11% Similarity=0.575 Sum_probs=3.4
Q ss_pred cchhhhHHH
Q psy444 434 NRRIQDLEE 442 (495)
Q Consensus 434 nrriqdlee 442 (495)
..+|+.+++
T Consensus 686 ~~~i~~l~~ 694 (880)
T PRK03918 686 EKRREEIKK 694 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 14
>KOG0994|consensus
Probab=93.78 E-value=5.6 Score=45.79 Aligned_cols=147 Identities=22% Similarity=0.396 Sum_probs=95.6
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhhccccceeeehhh-hhhccccchhhhcccchhh
Q psy444 70 QQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKT---ETIRSLTNKNLELKVQYE-EEIDNRDTRIKELTSDTSE 145 (495)
Q Consensus 70 qqtqqsvtkantceqhlekikkefkelqekyqrdlnqkt---etirsltnknlelkvqye-eeidnrdtrikeltsdtse 145 (495)
|..|....++|.-.+..++-.+|...|-.....-|+|++ ++|+.+.++-|.|.+... ++|.+--..|++-.+..+.
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n 1529 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN 1529 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 334444555555555555555555555555555566654 678888888877766543 5677777888888888999
Q ss_pred hhhhhccchhHHh---hhhhhhc--ccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhh
Q psy444 146 IDKIVSRKDAEIE---KLSKENE--KLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHE 216 (495)
Q Consensus 146 idkivsrkdaeie---klskene--klsmdlvfkenqevtelmkevdkkdnyietllkeneanvklckelekqvhe 216 (495)
||.|++|..+.|. .|..+.+ +-+.+.|-+.-..|.+.+.+.|..-+-....++.-.++..+..++=.+|.+
T Consensus 1530 Vd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1530 VDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999998766553 2322222 223455555566777777777777777777777777777777666555543
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.52 E-value=13 Score=40.45 Aligned_cols=90 Identities=33% Similarity=0.506 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHH
Q psy444 241 ASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMRE 320 (495)
Q Consensus 241 askikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemre 320 (495)
..++-.+-++|.+.++...++-.+...+.+.+..+++.++-+..++.-.-..+..+.+.++++...+. +..-++...+.
T Consensus 396 ~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 474 (1163)
T COG1196 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK-ELERELAELQE 474 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555566666666666666666666666677776666666666666667777776666554433 22233444444
Q ss_pred HHHHHHHHhhh
Q psy444 321 EIKRLEEVLKE 331 (495)
Q Consensus 321 eikrleevlke 331 (495)
.+.++..-++.
T Consensus 475 ~~~~~~~~l~~ 485 (1163)
T COG1196 475 ELQRLEKELSS 485 (1163)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 16
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.80 E-value=20 Score=36.18 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhccccceeeehhhhhhccccchhhhcccchhhhhhhhccch
Q psy444 81 TCEQHLEKIKKEFKELQEKYQ---RDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKD 154 (495)
Q Consensus 81 tceqhlekikkefkelqekyq---rdlnqktetirsltnknlelkvqyeeeidnrdtrikeltsdtseidkivsrkd 154 (495)
.|+..+..|..++.+|.+.-. ....+--+..|.+-..=+.-..+|..-++.-+.++.++-++-+..+...+..|
T Consensus 116 ~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd 192 (569)
T PRK04778 116 LIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD 192 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455555555444433221 12222222333333333444556777777777777777777777776666555
No 17
>PRK01156 chromosome segregation protein; Provisional
Probab=90.24 E-value=25 Score=36.38 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=7.9
Q ss_pred HHhhccchhhhHHHHHHH
Q psy444 25 QIEYKNNQLLEFEQELRE 42 (495)
Q Consensus 25 qieyknnqllefeqelre 42 (495)
.+++..+++-+++.++.+
T Consensus 184 ~le~~~~~l~~~e~eL~~ 201 (895)
T PRK01156 184 NIDYLEEKLKSSNLELEN 201 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 18
>KOG0161|consensus
Probab=88.71 E-value=60 Score=38.69 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=32.0
Q ss_pred HHHHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhhhhhc
Q psy444 52 LELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEK---YQRDLNQKTETIRSLT 115 (495)
Q Consensus 52 lelaktartkdqelrdlrqqtqqsvtkantceqhlekikkefkelqek---yqrdlnqktetirslt 115 (495)
.++..-..+.+..++.|+...++ |+.+..|+-++-|++++. ++-|+.-.-+-..+|.
T Consensus 953 ~k~~~Ek~~~e~~~~~l~~e~~~-------~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~ 1012 (1930)
T KOG0161|consen 953 QKLELEKNAAENKLKNLEEEINS-------LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLN 1012 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555556666555443 888888887777776654 3444444444444444
No 19
>PRK11637 AmiB activator; Provisional
Probab=88.41 E-value=24 Score=33.86 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHH
Q psy444 315 LDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364 (495)
Q Consensus 315 ldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlv 364 (495)
..++.++...++..+.+.+-+++-|.+..+.+...+..|+.++..+.-.+
T Consensus 186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l 235 (428)
T PRK11637 186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888999999988888888999888777655443
No 20
>KOG0161|consensus
Probab=88.28 E-value=64 Score=38.47 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=34.7
Q ss_pred hccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhh
Q psy444 309 NEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357 (495)
Q Consensus 309 nekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeei 357 (495)
+.-.-...++..++..|.+-|.+-.-.-+..+-..++++.++.+|+.-.
T Consensus 1121 ~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1121 AKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456677888888877777765566667777888899998887543
No 21
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.97 E-value=36 Score=34.61 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=24.3
Q ss_pred HHHHHHHHHh-chHHHHHHHHHHhHHHHHhhhccccchhh
Q psy444 243 KIKQLMSEIA-SKEESMKKLIKQNNELVERLNSVEPRIEV 281 (495)
Q Consensus 243 kikqlmseia-skeesmkklikqnnelverlnsvepriev 281 (495)
.+.+++..+. +....+.+++++..++-+.+..+...|..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666665 34456677777777777777666655544
No 22
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.98 E-value=41 Score=35.26 Aligned_cols=141 Identities=27% Similarity=0.407 Sum_probs=85.7
Q ss_pred hhhcchhhhhhhhcccc-------cCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchh
Q psy444 215 HELNINKELDRLNHEII-------HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287 (495)
Q Consensus 215 helninkeldrlnheii-------hkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiq 287 (495)
|..-+-.|+.+|--..- ++-++|+.--.+++.+..++..|++..++|-+. +++++..-+|-. .|+-|-
T Consensus 420 ~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e----~e~~~k~~~Rs~-Yt~RIl 494 (594)
T PF05667_consen 420 HRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE----LEKLPKDVNRSA-YTRRIL 494 (594)
T ss_pred HHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCCCHHH-HHHHHH
Confidence 44444555555553333 334555555667777788888888887777653 455555544422 222222
Q ss_pred hchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhH
Q psy444 288 IKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQER 367 (495)
Q Consensus 288 ikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqer 367 (495)
=-+.-++|--++....+.- -..+..||..+..-|....-.-..++-++-+||+-.++ -||.|++-+
T Consensus 495 EIv~NI~KQk~eI~KIl~D--------Tr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rk------aYK~La~lh 560 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSD--------TRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARK------AYKLLASLH 560 (594)
T ss_pred HHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHH------HHHHHHHHH
Confidence 2233344444444433321 22466788888888888888888889999899998775 488888777
Q ss_pred HHHHHHH
Q psy444 368 DQLANML 374 (495)
Q Consensus 368 dqlanml 374 (495)
+-....+
T Consensus 561 ~~c~~Li 567 (594)
T PF05667_consen 561 ENCSQLI 567 (594)
T ss_pred HHHHHHH
Confidence 6544443
No 23
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.42 E-value=48 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=10.3
Q ss_pred hhhhccccchhhhcccchhhhhhhh
Q psy444 126 EEEIDNRDTRIKELTSDTSEIDKIV 150 (495)
Q Consensus 126 eeeidnrdtrikeltsdtseidkiv 150 (495)
+.++++-...|..+.++..+.+..+
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L 257 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAAL 257 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHH
Confidence 3344444444444444434433333
No 24
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=81.98 E-value=73 Score=33.66 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q psy444 65 LRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEK 99 (495)
Q Consensus 65 lrdlrqqtqqsvtkantceqhlekikkefkelqek 99 (495)
+.++.++..........|.+-++.+....+.++..
T Consensus 405 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~ 439 (908)
T COG0419 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555554443
No 25
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=81.25 E-value=2 Score=40.15 Aligned_cols=57 Identities=42% Similarity=0.508 Sum_probs=42.8
Q ss_pred HHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHHHhcccc
Q psy444 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKD 383 (495)
Q Consensus 323 krleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmleeykqnakd 383 (495)
+.|+++|.||+- |-..--.+++||.+|++|.+..+-++..-..||.|++.......|
T Consensus 118 ~AL~eaL~ENe~----Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~ 174 (200)
T PF07412_consen 118 KALEEALEENEK----LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELD 174 (200)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 568888888875 222223678999999999999999999999999999987765444
No 26
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.18 E-value=23 Score=37.04 Aligned_cols=148 Identities=31% Similarity=0.442 Sum_probs=89.8
Q ss_pred chhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHh---HHHHHhhhccccchhhhccchhhchHHhhh
Q psy444 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQN---NELVERLNSVEPRIEVLTKDIQIKTEKLHK 295 (495)
Q Consensus 219 inkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqn---nelverlnsveprievltkdiqikteklhk 295 (495)
+.++|+.+.+.|-.-.+++....+.++|+.+++...+..-..+-++. ..+++-|..-+-.|+-|-.-++-..+++-.
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~ 412 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVE 412 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888899999999999999999887776665554332 233444555555667777777777788887
Q ss_pred hHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHH-HH
Q psy444 296 LAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLAN-ML 374 (495)
Q Consensus 296 laeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlan-ml 374 (495)
|+.+.+.. | ..+-+++.+|++.....+-+. +++-.+|+.+++++-.-..-++.++++.+ ..
T Consensus 413 L~~qWe~~---R--------~pL~~e~r~lk~~~~~~~~e~-------~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 413 LAQQWEKH---R--------APLIEEYRRLKEKASNRESES-------KQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHH---H--------hHHHHHHHHHHHHHhhcchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766532 1 133445555554443332222 23334555555555554444555555433 33
Q ss_pred HHHHhccccc
Q psy444 375 EEYKQNAKDV 384 (495)
Q Consensus 375 eeykqnakdv 384 (495)
.+|....+|+
T Consensus 475 ~e~e~~~k~~ 484 (594)
T PF05667_consen 475 KELEKLPKDV 484 (594)
T ss_pred HHHHhCCCCC
Confidence 4566666664
No 27
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.99 E-value=79 Score=33.41 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=11.3
Q ss_pred hhhcchhHHHHHHHHhhccchhhhHHH
Q psy444 12 WHTKISEAELLVKQIEYKNNQLLEFEQ 38 (495)
Q Consensus 12 whtkiseaellvkqieyknnqllefeq 38 (495)
|+..+.+......+++-+-.+|-+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~ 298 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELER 298 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 28
>KOG0250|consensus
Probab=80.65 E-value=1.1e+02 Score=34.88 Aligned_cols=103 Identities=28% Similarity=0.246 Sum_probs=52.1
Q ss_pred HHhhhccccchhhhccchhh------chHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhc----
Q psy444 269 VERLNSVEPRIEVLTKDIQI------KTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAG---- 338 (495)
Q Consensus 269 verlnsveprievltkdiqi------kteklhklaeeheeliqtrrnekkleldemreeikrleevlkenecerag---- 338 (495)
++-.+.-+|+-+-..++-.+ +.+.+++++++... +++-++..|...++++-+-+-.-+|
T Consensus 832 ~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~-----------ei~rlk~~i~~~ee~~~~~~e~~~~~~~~ 900 (1074)
T KOG0250|consen 832 VEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKR-----------EIKRLKRQIQMCEESLGELEELHRGLHEA 900 (1074)
T ss_pred HHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHH-----------HHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444555555555444332 33444554443322 2334455555556665554444444
Q ss_pred -----cchhhhcc-hHHHHHHHHhhh-hhhHHHHhHHHHHHHHHHHHhccc
Q psy444 339 -----LLTKEKRK-DEEIKRLKEEIG-KYKMLVQERDQLANMLEEYKQNAK 382 (495)
Q Consensus 339 -----lltkekrk-deeikrlkeeig-kykmlvqerdqlanmleeykqnak 382 (495)
..+.-+.- |+-++.+.+-+| ...+.-+.|.-+.-+...+..+.-
T Consensus 901 ~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l 951 (1074)
T KOG0250|consen 901 RKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALL 951 (1074)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333 666666666664 345555667777777766665543
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.84 E-value=49 Score=29.76 Aligned_cols=42 Identities=29% Similarity=0.607 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q psy444 62 DQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRD 103 (495)
Q Consensus 62 dqelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrd 103 (495)
..+++++|++......-...-+..+..++.+..+++.+|..-
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 467888888877666655556666778888888888887655
No 30
>KOG0995|consensus
Probab=78.83 E-value=99 Score=33.24 Aligned_cols=223 Identities=24% Similarity=0.309 Sum_probs=119.0
Q ss_pred hhhhhcchhHHHHHHHHhhccchhhh-----HHHHHHHHhc-cchhHHHHHHHhhccccHHHHHHHHHHHhhhhccch-H
Q psy444 10 KEWHTKISEAELLVKQIEYKNNQLLE-----FEQELRETMK-QKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANT-C 82 (495)
Q Consensus 10 kewhtkiseaellvkqieyknnqlle-----feqelretmk-qkddkllelaktartkdqelrdlrqqtqqsvtkant-c 82 (495)
..||+-++---.||.-|.. |-++.+ -++..+.+|- ---|-...--..-..-+..-.++-++++..+++-+| -
T Consensus 155 H~WP~iL~mlhWlvdlI~~-~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i 233 (581)
T KOG0995|consen 155 HNWPHILGMLHWLVDLIRI-NTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSI 233 (581)
T ss_pred CccHHHHHHHHHHHHHHHH-hHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH
Confidence 3588887777777766654 233333 4445666665 111111111111222222245556666666665555 3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhhhhhhhhhccccceeeehhhhhhccccchhhhcccchhhhhhhhccchhHHhhh
Q psy444 83 EQHLEKIKKEFKELQEKYQR--DLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKL 160 (495)
Q Consensus 83 eqhlekikkefkelqekyqr--dlnqktetirsltnknlelkvqyeeeidnrdtrikeltsdtseidkivsrkdaeiekl 160 (495)
-.-++..++.-.+|-++|+. ..-++.++.|-.- -.....+.---+-...+++-....++.+++...||+.-
T Consensus 234 ~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~-------~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMINEREKDPGKEESLREKK-------ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH-------HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34456666666666666651 1112222221100 00001111111234455555666777777777777777
Q ss_pred hhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhh
Q psy444 161 SKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQN 240 (495)
Q Consensus 161 skeneklsmdlvfkenqevtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqn 240 (495)
..|+++++ +++++|-+-|++.+--++..=.-|-.+-+|-++|.+ |+.++|+|..++.--+++|+.-
T Consensus 307 EeE~e~lq--------~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~------i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 307 EEEIEKLQ--------KENDELKKQIELQGISGEDVERMNLERNKLKRELNK------IQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHH--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHH
Confidence 77777664 467788888887765555555555555555554443 6778888888887777777766
Q ss_pred HHHHHHHHHHHhch
Q psy444 241 ASKIKQLMSEIASK 254 (495)
Q Consensus 241 askikqlmseiask 254 (495)
+..|..+.-..++-
T Consensus 373 f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 373 FKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555554444443
No 31
>KOG4674|consensus
Probab=78.65 E-value=1.6e+02 Score=35.39 Aligned_cols=129 Identities=29% Similarity=0.334 Sum_probs=65.2
Q ss_pred HHHHhhhcccc-chhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhh----hhhccch
Q psy444 267 ELVERLNSVEP-RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENEC----ERAGLLT 341 (495)
Q Consensus 267 elverlnsvep-rievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkenec----eragllt 341 (495)
++++-.-+.+| +++.+-++|--+.+.+.+........+-+--..++ +...+..++..-+.+..- -|-- |+
T Consensus 1444 e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~~k~----e~~~e~e~~~~~~~~~~~E~lk~r~R-l~ 1518 (1822)
T KOG4674|consen 1444 ELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEGTKK----ELESEKEELKQRLTELAAENLKLRSR-LA 1518 (1822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHhh-cc
Confidence 45555556666 77777777766666665555554444422222221 222222222222222222 2222 56
Q ss_pred hhhcchHHHHHHHHhhhhhh-HHHHhHHHHHH---HHHHHHhccccceeeccccchhhhhhhhhcch
Q psy444 342 KEKRKDEEIKRLKEEIGKYK-MLVQERDQLAN---MLEEYKQNAKDVVYYEDMKDKLEVELDKLRME 404 (495)
Q Consensus 342 kekrkdeeikrlkeeigkyk-mlvqerdqlan---mleeykqnakdvvyyedmkdkleveldklrme 404 (495)
++.+...+|.|+++++++-+ -.++|+.-... |+..-. -+.---..++++.++|.-+++.
T Consensus 1519 ~eeq~~~~I~rl~~eLe~~~~~~l~E~~~~~e~s~~~~~~~----~~~~~~~~~e~~~e~lk~~~~~ 1581 (1822)
T KOG4674|consen 1519 KEEQYQKEISRLKEELESTKEAKLEENTESSETSRMLDLQN----QEEDLSAIKEKLTEELKNLPSV 1581 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccchhhH----HHHHHhhccCCcHHHhccCCCc
Confidence 66688899999999998643 22566654322 222111 1111123456777777777776
No 32
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=78.54 E-value=30 Score=27.05 Aligned_cols=138 Identities=22% Similarity=0.249 Sum_probs=80.0
Q ss_pred chHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhcccc
Q psy444 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKL 313 (495)
Q Consensus 234 ddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkl 313 (495)
-..+.+...+.+.+.+++.+....+..+...-..|++.....-+.|.-...++.-+-..|+..+..+...++.-...-+
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~- 110 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ- 110 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3477888889999999999999999999988888888655344455555566666777777777777666655332111
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhccch-----hhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHH
Q psy444 314 ELDEMREEIKRLEEVLKENECERAGLLT-----KEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376 (495)
Q Consensus 314 eldemreeikrleevlkeneceragllt-----kekrkdeeikrlkeeigkykmlvqerdqlanmlee 376 (495)
.+.+..+ +...+.+.+..-.+... .-...-.+++.++.+|..+...+..-...+..|..
T Consensus 111 ~~~~~~~----l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (213)
T cd00176 111 FFRDADD----LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLE 174 (213)
T ss_pred HHHHHHH----HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 1111111 44444444333222221 22223344566666666555554444444444433
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.92 E-value=65 Score=34.37 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=36.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHH
Q psy444 194 ETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEI 251 (495)
Q Consensus 194 etllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmsei 251 (495)
..|-.|+---..|...|-.-..++.| +.-.+..+|.||..--.||.|+|.-.
T Consensus 608 ~sLsaEtriKldLfsaLg~akrq~ei------~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 608 NSLSAETRIKLDLFSALGDAKRQLEI------AQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666666677777665555544 45567899999999999999998643
No 34
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.04 E-value=59 Score=34.89 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccceeeehhhhhhc----cccchhhhcccchhhhhhhhccchhHHhhhhhhhcc
Q psy444 91 KEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEID----NRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEK 166 (495)
Q Consensus 91 kefkelqekyqrdlnqktetirsltnknlelkvqyeeeid----nrdtrikeltsdtseidkivsrkdaeieklskenek 166 (495)
+|||---+++-.++|..++...+ +|.||.=+++--++|+ --+.+.++|++|..-....|+.-...-++-----++
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~-~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~k 334 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKT-QNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEK 334 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45555555555555555544433 4445544444444433 234566777877655544443222111111111122
Q ss_pred cccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhh-hhhhhcccccCchHHhhhHHHHH
Q psy444 167 LSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKE-LDRLNHEIIHKDDEIRQNASKIK 245 (495)
Q Consensus 167 lsmdlvfkenqevtelmkevdkkdnyietllkeneanvklckelekqvhelninke-ldrlnheiihkddeirqnaskik 245 (495)
|+...+-|| .-|+ +|++|. .+|-+||..-+|+-| ....|.|.+.-+-++-.--+++.
T Consensus 335 l~~eie~kE---------------eei~-~L~~~~------d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~ 392 (622)
T COG5185 335 LKSEIELKE---------------EEIK-ALQSNI------DELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSD 392 (622)
T ss_pred HHHHHHHHH---------------HHHH-HHHhhH------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222222 2222 223332 234444444455432 33444444444444444445555
Q ss_pred HHHHHHhchH-------HHHHHHHHHhHHHHHhhhccccch
Q psy444 246 QLMSEIASKE-------ESMKKLIKQNNELVERLNSVEPRI 279 (495)
Q Consensus 246 qlmseiaske-------esmkklikqnnelverlnsvepri 279 (495)
.||+++.+.+ +|+.|+..|-+.|..++.-+...|
T Consensus 393 ~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 6666655543 566677777777777765553333
No 35
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.05 E-value=24 Score=37.26 Aligned_cols=121 Identities=29% Similarity=0.488 Sum_probs=78.3
Q ss_pred cchhhhhcchhHHHHHHHHhhccchhhhHHHHHHHHhccchhHHHHHH---HhhccccHHHHHHHHHHHhhhhccchHHH
Q psy444 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELA---KTARTKDQELRDLRQQTQQSVTKANTCEQ 84 (495)
Q Consensus 8 kfkewhtkiseaellvkqieyknnqllefeqelretmkqkddkllela---ktartkdqelrdlrqqtqqsvtkantceq 84 (495)
++++...|++.-..+|.-|. +++.-+.+.+..|-.-+||-- +|.+.-..-|.+.....|.|-.--.|-.-
T Consensus 346 kvkeLQ~k~~kQqvfvDiin-------kLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLql 418 (527)
T PF15066_consen 346 KVKELQMKITKQQVFVDIIN-------KLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQL 418 (527)
T ss_pred HHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46677777777777776552 122222233333333344322 22222222344445566677777778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccceeeehhhhhhccccchhhhcccchhhhhhhhccchhHHhhhhhhh
Q psy444 85 HLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKEN 164 (495)
Q Consensus 85 hlekikkefkelqekyqrdlnqktetirsltnknlelkvqyeeeidnrdtrikeltsdtseidkivsrkdaeieklsken 164 (495)
.|.|||..|--|||+|.-.+.||..++. ---|+|+++|.|+.+|+.|....
T Consensus 419 elkK~k~nyv~LQEry~~eiQqKnksvs-----------------------------qclEmdk~LskKeeeverLQ~lk 469 (527)
T PF15066_consen 419 ELKKIKANYVHLQERYMTEIQQKNKSVS-----------------------------QCLEMDKTLSKKEEEVERLQQLK 469 (527)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhHHH-----------------------------HHHHHHHHhhhhHHHHHHHHHHH
Confidence 8999999999999999999988876653 23478999999999999887543
No 36
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.45 E-value=61 Score=33.34 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHH
Q psy444 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLE 375 (495)
Q Consensus 317 emreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmle 375 (495)
++++.|+.|..+++.---.++.+......-..-.-...++..+-.++.+||.++-.-|+
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777665555555443333333344667788888899999988765443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.85 E-value=1.6e+02 Score=32.43 Aligned_cols=80 Identities=25% Similarity=0.493 Sum_probs=51.9
Q ss_pred hHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHh-HHHHHhhhccccchhhhc
Q psy444 205 KLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQN-NELVERLNSVEPRIEVLT 283 (495)
Q Consensus 205 klckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqn-nelverlnsveprievlt 283 (495)
..+.++|++... +|+.++.+..++.+.--+..++-.++.++..+-.+.+......++.- ..+...+++++-.+..+.
T Consensus 621 ~~~~~~e~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 621 ERQEELEKQLKQ--INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888855 57888888888877777777777777777777666555554444433 334455566555555554
Q ss_pred cch
Q psy444 284 KDI 286 (495)
Q Consensus 284 kdi 286 (495)
..+
T Consensus 699 ~e~ 701 (1201)
T PF12128_consen 699 QEL 701 (1201)
T ss_pred HHH
Confidence 433
No 38
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=71.30 E-value=19 Score=32.59 Aligned_cols=57 Identities=33% Similarity=0.417 Sum_probs=33.9
Q ss_pred hccccchhhhccchhhchHHhhhhHHHHHHHHHhh--hhccccccHHHHHHHHHHHHHhhhh
Q psy444 273 NSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR--RNEKKLELDEMREEIKRLEEVLKEN 332 (495)
Q Consensus 273 nsveprievltkdiqikteklhklaeeheeliqtr--rnekkleldemreeikrleevlken 332 (495)
.|.+||||+|..-|.---. ..|- -+++|-.++ ...-+-|||.+..|--+|++||..-
T Consensus 2 gsLeP~iE~LInrInelQQ-aKKk--~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkK 60 (134)
T PF15233_consen 2 GSLEPQIEDLINRINELQQ-AKKK--SSEELGEAQALWEALQRELDSLNGEKVHLEEILNKK 60 (134)
T ss_pred CCccchHHHHHHHHHHHHH-HHHH--hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4789999999776531111 1111 123333222 2233458999999999999998643
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.51 E-value=1.7e+02 Score=32.00 Aligned_cols=38 Identities=32% Similarity=0.569 Sum_probs=24.9
Q ss_pred ccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHh
Q psy444 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE 356 (495)
Q Consensus 312 kleldemreeikrleevlkeneceraglltkekrkdeeikrlkee 356 (495)
+-+....+.||.||-..|++-+-++. -++.+|++|..+
T Consensus 561 ~ee~~kaq~EVERLl~~L~~~E~EK~-------~ke~ki~~Leke 598 (775)
T PF10174_consen 561 REESEKAQAEVERLLDILREAENEKN-------DKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHH
Confidence 34455667788888888877766553 245567777666
No 40
>KOG4673|consensus
Probab=69.28 E-value=97 Score=34.65 Aligned_cols=228 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh------------------hhhhhhhhhhhcccc---------------ceeeehhhhhhccc
Q psy444 86 LEKIKKEFKELQEKYQRD------------------LNQKTETIRSLTNKN---------------LELKVQYEEEIDNR 132 (495)
Q Consensus 86 lekikkefkelqekyqrd------------------lnqktetirsltnkn---------------lelkvqyeeeidnr 132 (495)
|+|.+++++.|.++.+.. +|++++..+--.|.. +|-|||.- +..|
T Consensus 348 LdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~--~kER 425 (961)
T KOG4673|consen 348 LDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQAL--TKER 425 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH--HHhH
Q ss_pred cchhhhcccchhhhhhhhcc-----chhHHhhhhhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhhHH
Q psy444 133 DTRIKELTSDTSEIDKIVSR-----KDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLC 207 (495)
Q Consensus 133 dtrikeltsdtseidkivsr-----kdaeieklskeneklsmdlvfkenqevtelmkevdkkdnyietllkeneanvklc 207 (495)
|+--++..|--.+.-.-+-+ ||.-|..|-.|.||||-...-..++ +|.+..|+.--+||++.+..-|+..
T Consensus 426 Dalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~i-----IkKLRAk~ke~etl~~K~ge~i~~L 500 (961)
T KOG4673|consen 426 DALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAI-----IKKLRAKIKEAETLEEKKGELITKL 500 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHhhhhhHHHHHhhhHHHHH
Q ss_pred HHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchh
Q psy444 208 KELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287 (495)
Q Consensus 208 kelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiq 287 (495)
.+ |+.+|..-.-.|..-=++-...|+.+-++..+.++-.-.+-.--.+|-+++-+......-+.+|.|
T Consensus 501 ~s------------E~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq 568 (961)
T KOG4673|consen 501 QS------------EENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ 568 (961)
T ss_pred HH------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q ss_pred hchHHhh--hhHHHHHHHHHh--------hhhccccccHH--HHHHHHHHHHHhhhhh
Q psy444 288 IKTEKLH--KLAEEHEELIQT--------RRNEKKLELDE--MREEIKRLEEVLKENE 333 (495)
Q Consensus 288 ikteklh--klaeeheeliqt--------rrnekklelde--mreeikrleevlkene 333 (495)
|...|. .+.++|+.|.|. ++.|..+--.| ||.||..|..-|.+.|
T Consensus 569 -k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE 625 (961)
T KOG4673|consen 569 -KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAE 625 (961)
T ss_pred -HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 41
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.61 E-value=91 Score=28.21 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=56.6
Q ss_pred chHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchH
Q psy444 176 NQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKE 255 (495)
Q Consensus 176 nqevtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaske 255 (495)
-.++..+|+++.+.+ +.......+.-.+.|..|=..|... .--.-.+-+--+..|...+++..+|=
T Consensus 129 l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~------------~~~~~~~~~~l~~~i~~~L~~~~~kL 194 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKW------------FQKPQQENESLAEAIRDDLNDYNAKL 194 (264)
T ss_pred HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666677776664 4455555555555555554444432 11111222233455666666666666
Q ss_pred HHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHH
Q psy444 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELI 304 (495)
Q Consensus 256 esmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeli 304 (495)
..+..++..-..-+..-+.+-..+...-.+++-|...+.....+-.+.|
T Consensus 195 ~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 195 QDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666554333322222223344444455555555544444444444
No 42
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=67.59 E-value=35 Score=36.24 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=76.7
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHH---HHhchHHHHHHHHHHhHH
Q psy444 191 NYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMS---EIASKEESMKKLIKQNNE 267 (495)
Q Consensus 191 nyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlms---eiaskeesmkklikqnne 267 (495)
+-|.+|-.|-+.+.++|-|++..-|.-.+..-+|-.+-+ .|-..|. -...+.-+|-.+..|...
T Consensus 130 ~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le-------------~Ive~~~~~~~~~~~~~~lPtF~~~Des 196 (683)
T PF08580_consen 130 DVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELE-------------TIVEEMPSSTNSSNKRFSLPTFSPQDES 196 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHH-------------HHHHhccccCCCCcCCcCCCCCCcHHHH
Confidence 347889999999999999999888876663223222211 1111120 001223333334445555
Q ss_pred HHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcch
Q psy444 268 LVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKD 347 (495)
Q Consensus 268 lverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkd 347 (495)
+.+.|-.++-||.-|..-+.|=..+|... ++|. +.- .....++ -+-.+.+|..+-+--.
T Consensus 197 l~~~ll~L~arm~PLraSLdfLP~Ri~~F--------~~ra-~~~--fp~a~e~----------L~~r~~~L~~k~~~L~ 255 (683)
T PF08580_consen 197 LYSSLLALFARMQPLRASLDFLPMRIEEF--------QSRA-ESI--FPSACEE----------LEDRYERLEKKWKKLE 255 (683)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH--------HHHH-HHh--hHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 55555555555555555444433333222 1221 000 0111111 1122334445555555
Q ss_pred HHHHHHHHhhhhhhHHHH---hHHHHHHHHHHH
Q psy444 348 EEIKRLKEEIGKYKMLVQ---ERDQLANMLEEY 377 (495)
Q Consensus 348 eeikrlkeeigkykmlvq---erdqlanmleey 377 (495)
.+++-||.|+|.-+..+- -=+|+..|++..
T Consensus 256 ~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esv 288 (683)
T PF08580_consen 256 KEAESLKKELIEDRWNIVFRNLGRQAQKMCESV 288 (683)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 677788888876554332 336777777654
No 43
>KOG0978|consensus
Probab=66.85 E-value=94 Score=33.87 Aligned_cols=216 Identities=29% Similarity=0.362 Sum_probs=0.0
Q ss_pred hhhhhhhccchhHHhhhhhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhh-----------hhhHHHHHHH
Q psy444 144 SEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA-----------NVKLCKELEK 212 (495)
Q Consensus 144 seidkivsrkdaeieklskeneklsmdlvfkenqevtelmkevdkkdnyietllkenea-----------nvklckelek 212 (495)
.|++....+.-+--+.-..+..+..+|+.-+--..|.++.+++.++-.-...++.+++. |.+|.-++++
T Consensus 400 ~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~e 479 (698)
T KOG0978|consen 400 AETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELRE 479 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H--------hhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhcc
Q psy444 213 Q--------VHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTK 284 (495)
Q Consensus 213 q--------vhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltk 284 (495)
. -...+.|.....|--+..--++.|-+-.+...-+--.|.--++-+..+-..-+-+..-+--..--+|...+
T Consensus 480 kdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk 559 (698)
T KOG0978|consen 480 KDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK 559 (698)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH
Q ss_pred chhhchHHhhhhHHHHHHH------HHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHH----HHHHH
Q psy444 285 DIQIKTEKLHKLAEEHEEL------IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEE----IKRLK 354 (495)
Q Consensus 285 diqikteklhklaeeheel------iqtrrnekkleldemreeikrleevlkeneceraglltkekrkdee----ikrlk 354 (495)
-++=-...++.|-.+-+.. ||+.-++..++++-++.-.+||+| ||++..---..-++.+. +..|.
T Consensus 560 ~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE-----E~e~L~~kle~~k~~~~~~s~d~~L~ 634 (698)
T KOG0978|consen 560 KAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE-----ELERLKRKLERLKKEESGASADEVLA 634 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccccccccccHHHH
Q ss_pred HhhhhhhHHH
Q psy444 355 EEIGKYKMLV 364 (495)
Q Consensus 355 eeigkykmlv 364 (495)
+|+..||-++
T Consensus 635 EElk~yK~~L 644 (698)
T KOG0978|consen 635 EELKEYKELL 644 (698)
T ss_pred HHHHHHHhce
No 44
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=63.72 E-value=1.8e+02 Score=29.71 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccceee
Q psy444 86 LEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK 122 (495)
Q Consensus 86 lekikkefkelqekyqrdlnqktetirsltnknlelk 122 (495)
+++|-.-+++++..|-..|+.-...++.+...+.-+.
T Consensus 210 ~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~ 246 (560)
T PF06160_consen 210 MEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE 246 (560)
T ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC
Confidence 3344444455555555556665666666666655443
No 45
>KOG0249|consensus
Probab=61.77 E-value=52 Score=36.64 Aligned_cols=193 Identities=31% Similarity=0.385 Sum_probs=106.5
Q ss_pred hhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhcccc----chhhhccchhhch
Q psy444 215 HELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP----RIEVLTKDIQIKT 290 (495)
Q Consensus 215 helninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvep----rievltkdiqikt 290 (495)
....|+.--|.|+|++-.+|.++|||-.+..+|-..++--|+-...-.+ .+.|-+||. |+.-+|
T Consensus 85 e~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-----ae~lpeveael~qr~~al~------- 152 (916)
T KOG0249|consen 85 ESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-----AETLPEVEAELAQRNAALT------- 152 (916)
T ss_pred CCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-----hhhhhhhHHHHHHHHHHHH-------
Confidence 3456777779999999999999999999998887666655544332222 223333322 222222
Q ss_pred HHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccc-hhhhcchHHHHHHHHhhhhhhHHHHhHHH
Q psy444 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL-TKEKRKDEEIKRLKEEIGKYKMLVQERDQ 369 (495)
Q Consensus 291 eklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceragll-tkekrkdeeikrlkeeigkykmlvqerdq 369 (495)
.|++|-.-+-+|-..-..++++.-.|+.|+-.-++-|+--.-||. |-+.|-+--.+..-.-..+-.-|.|+-++
T Consensus 153 -----~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s 227 (916)
T KOG0249|consen 153 -----KAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELES 227 (916)
T ss_pred -----HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244444444444444445677778888888888887776666654 33333332333333333444556666666
Q ss_pred HHHHHHHHHhccccceeeccccchhhhhhhhhcchhhhhc-cccccchhhhhhHHHHhhh
Q psy444 370 LANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKI-KLRDSELDKKHEVIAEMKL 428 (495)
Q Consensus 370 lanmleeykqnakdvvyyedmkdkleveldklrmesaeki-klrdseldkkheviaemkl 428 (495)
+++-|++.... +|-. -.-+..|.-+++.||-.++++- ++|| -+++..+-+.++-.
T Consensus 228 ~kk~l~~~~~~-k~rl--~~d~E~Lr~e~~qL~~~~~~~~~~mrd-~~~~~~e~~~~~~~ 283 (916)
T KOG0249|consen 228 VKKQLEEMRHD-KDKL--RTDIEDLRGELDQLRRSSLEKEQELRD-HLRTYAERRRETET 283 (916)
T ss_pred HHHHHHHHHHH-HHHH--hhhHHHHHHHHHHHHHHHHhhhhhhcc-hhhhhHHHHHhhcc
Confidence 66666554321 1111 1123456677788875555543 3343 23344444444433
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.00 E-value=1.5e+02 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHhhcchhHHHHHHhhhhhhhhHHHHHHHH
Q psy444 182 LMKEVDKKDNYIETLLKENEANVKLCKELEKQ 213 (495)
Q Consensus 182 lmkevdkkdnyietllkeneanvklckelekq 213 (495)
|++|.-.-+.-+..+++..-.+||-+-.++..
T Consensus 105 Lf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK 136 (325)
T PF08317_consen 105 LFREYYTADPDMRLLMDNQFQLVKTYARLEAK 136 (325)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566667777777788877766643
No 47
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.55 E-value=3e+02 Score=30.44 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHH
Q psy444 178 EVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEES 257 (495)
Q Consensus 178 evtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskees 257 (495)
++....++.+.+-.+++..+..-+...+-++.+-..+..+......+-..|.+-+.-....+....+++++..+...-+.
T Consensus 845 ~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 924 (1201)
T PF12128_consen 845 EVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVER 924 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666665555555555555554444444444444444455556666666666666666666
Q ss_pred HHHHH
Q psy444 258 MKKLI 262 (495)
Q Consensus 258 mkkli 262 (495)
++.+|
T Consensus 925 f~~~l 929 (1201)
T PF12128_consen 925 FKGVL 929 (1201)
T ss_pred HHHHH
Confidence 66666
No 48
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.16 E-value=13 Score=37.10 Aligned_cols=44 Identities=48% Similarity=0.718 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhh--hccchhhhcchHHHHHHHHhhhh
Q psy444 314 ELDEMREEIKRLEEVLKENECER--AGLLTKEKRKDEEIKRLKEEIGK 359 (495)
Q Consensus 314 eldemreeikrleevlkenecer--aglltkekrkdeeikrlkeeigk 359 (495)
|+++++-.+-|+.|=.-|.||-| |-|.-||.|| |||.||.-|..
T Consensus 90 EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARk--EIkQLkQvieT 135 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECHRVEAQLALKEARK--EIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45555555555555555556655 4455555543 55555554443
No 49
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.27 E-value=3.7 Score=42.15 Aligned_cols=73 Identities=30% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhHHHH-----------HhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhh
Q psy444 241 ASKIKQLMSEIASKEESMKKLIKQNNELV-----------ERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN 309 (495)
Q Consensus 241 askikqlmseiaskeesmkklikqnnelv-----------erlnsveprievltkdiqikteklhklaeeheeliqtrrn 309 (495)
..+|..|-..+.++++.|+..=......| .+.|...|-|.+|.+.++-+..+++.|-.+++..-+.|.-
T Consensus 575 ~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~ 654 (713)
T PF05622_consen 575 SQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSKQMREQ 654 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666666666665543322222222 2333334445556666666666666665555555544444
Q ss_pred cccc
Q psy444 310 EKKL 313 (495)
Q Consensus 310 ekkl 313 (495)
|-+|
T Consensus 655 EekL 658 (713)
T PF05622_consen 655 EEKL 658 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 4444
No 50
>KOG4674|consensus
Probab=56.12 E-value=4.4e+02 Score=31.87 Aligned_cols=278 Identities=26% Similarity=0.392 Sum_probs=141.9
Q ss_pred hhccchhhhHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH------------
Q psy444 27 EYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFK------------ 94 (495)
Q Consensus 27 eyknnqllefeqelretmkqkddkllelaktartkdqelrdlrqqtqqsvtkantceqhlekikkefk------------ 94 (495)
.-.-|++....--++.++...+..++..|.+. |.|.+||.+.- .|-.-+.++++.+.
T Consensus 1028 ~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~----q~l~kl~ee~~-------~~~~e~~~Lk~~~~~~~~~l~e~~~~ 1096 (1822)
T KOG4674|consen 1028 EDLQNDLKTETEQLRKAQSKYESELVQHADLT----QKLIKLREEFA-------KCNDELLKLKKSRESRHALLSEQERD 1096 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHHhhHHHHHhHHhhcccc
Confidence 33344444444455666666666666665543 56667766543 23333333333333
Q ss_pred --HHHHHHHhhhhhhhhhhhhhccccceeeehhhhhhcc----ccchhhhcccchhhhhhhhccchhHH-------hhhh
Q psy444 95 --ELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDN----RDTRIKELTSDTSEIDKIVSRKDAEI-------EKLS 161 (495)
Q Consensus 95 --elqekyqrdlnqktetirsltnknlelkvqyeeeidn----rdtrikeltsdtseidkivsrkdaei-------ekls 161 (495)
+-+.-|.+.++-....|-+|-.-|--|--|+++--++ +.+--++- -|.++.||+.-..|- .-+.
T Consensus 1097 w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g---~sdL~~iv~~LR~Ekei~~tk~~~lk 1173 (1822)
T KOG4674|consen 1097 WSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG---LSDLQNIVSFLRKEKEIAETKLDTLK 1173 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 3334455556666677777776665555666655444 22211111 456788887433322 2233
Q ss_pred hhhcccccchh-----------------------cccchHHHHHHHHhhc-----chhHHHHHHhhhhhhhhHHHHHHHH
Q psy444 162 KENEKLSMDLV-----------------------FKENQEVTELMKEVDK-----KDNYIETLLKENEANVKLCKELEKQ 213 (495)
Q Consensus 162 keneklsmdlv-----------------------fkenqevtelmkevdk-----kdnyietllkeneanvklckelekq 213 (495)
.+|-.|.--.. ..--++..++|+.|.. -+|. .|-++|++|.--|.||.+.
T Consensus 1174 ~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~--~LRee~~~~~~k~qEl~~~ 1251 (1822)
T KOG4674|consen 1174 RENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNK--VLREENEANLEKIQELRDK 1251 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHH
Confidence 33332211000 0001122222222211 1121 3556788888888888887
Q ss_pred hhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccc-hhhhccchhhchHH
Q psy444 214 VHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPR-IEVLTKDIQIKTEK 292 (495)
Q Consensus 214 vhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvepr-ievltkdiqiktek 292 (495)
+..++. ++-.| +-++-+--++|--.+.++-.-++.+...-+++++|++..-.+.|- ++-|..+|.---++
T Consensus 1252 i~kl~~--el~pl-------q~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1252 IEKLNF--ELAPL-------QNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHHHHh--hHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 766543 23333 334455556777778888888889999999999999986655552 34444443221111
Q ss_pred h---hhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHh
Q psy444 293 L---HKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVL 329 (495)
Q Consensus 293 l---hklaeeheeliqtrrnekkleldemreeikrleevl 329 (495)
| ..+.++....+-+-++--+..+|+.-.++..+.+.+
T Consensus 1323 l~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~ 1362 (1822)
T KOG4674|consen 1323 LEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKEL 1362 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333333333333444455565555554444433
No 51
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=55.54 E-value=1e+02 Score=26.50 Aligned_cols=87 Identities=28% Similarity=0.428 Sum_probs=60.9
Q ss_pred CchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhh------------HHHH
Q psy444 233 KDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKL------------AEEH 300 (495)
Q Consensus 233 kddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhkl------------aeeh 300 (495)
-|+++......++.--.+..+|-.++.++++.--+.++.+... |.++||..+ .+..
T Consensus 14 ldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~------------VE~eKlkAIG~RN~l~s~~k~R~~~ 81 (120)
T PF14931_consen 14 LDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKR------------VENEKLKAIGARNLLKSEAKQREAQ 81 (120)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 3677788888888888888888888888887766666554321 233444322 2333
Q ss_pred HHHHHhhhhccccccHHHHHHHHHHHHHhhh
Q psy444 301 EELIQTRRNEKKLELDEMREEIKRLEEVLKE 331 (495)
Q Consensus 301 eeliqtrrnekkleldemreeikrleevlke 331 (495)
...+|..-.||+.+|+.++-|...|..|-.+
T Consensus 82 ~q~lq~~I~Ek~~eLERl~~E~~sL~kve~e 112 (120)
T PF14931_consen 82 QQQLQALIAEKKMELERLRSEYESLQKVEQE 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999888887776554
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=55.31 E-value=1.6e+02 Score=26.53 Aligned_cols=98 Identities=30% Similarity=0.424 Sum_probs=47.5
Q ss_pred HHHHHHHHhccchhHHHHHHHhhc---cccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy444 36 FEQELRETMKQKDDKLLELAKTAR---TKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIR 112 (495)
Q Consensus 36 feqelretmkqkddkllelaktar---tkdqelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdlnqktetir 112 (495)
|+.+++....+-|+-..+-|+.-- +-..++.++|.+.......-..++.-+..+++.....- ...-||..+..+..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~-~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEET-LARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhHhHHHHHHHHHH
Confidence 666666665555554444443321 11245666766666665555566666666665554321 12233433333222
Q ss_pred hhccccceeeehhhhhhccccchhh
Q psy444 113 SLTNKNLELKVQYEEEIDNRDTRIK 137 (495)
Q Consensus 113 sltnknlelkvqyeeeidnrdtrik 137 (495)
..=--++-.|+++|..-..++.
T Consensus 131 ---eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 131 ---EELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTSTT--
T ss_pred ---HHHHHHHhhhhhhhhhhhhccc
Confidence 1111234456666666555554
No 53
>smart00150 SPEC Spectrin repeats.
Probab=54.86 E-value=61 Score=22.70 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.1
Q ss_pred hHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 235 deirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
+.+..-..+.+.++.+|.....++..+...-+.|+..
T Consensus 31 ~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 31 ESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 4566667788899999999999999999988888875
No 54
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.30 E-value=4.4 Score=41.61 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhcc
Q psy444 243 KIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTK 284 (495)
Q Consensus 243 kikqlmseiaskeesmkklikqnnelverlnsveprievltk 284 (495)
++..|-+.+........+|-.++...-+++..++-.++-+.+
T Consensus 482 ~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 482 KLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555444444555555555544554444444444333
No 55
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.77 E-value=35 Score=30.14 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=56.4
Q ss_pred HHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q psy444 40 LRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLN 105 (495)
Q Consensus 40 lretmkqkddkllelaktartkdqelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdln 105 (495)
.+....+++..|--|...++..++.-..||++..+.-+.+..+++-++.++.|-..|..-|--.|-
T Consensus 38 ~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LP 103 (135)
T TIGR03495 38 QQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLP 103 (135)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCc
Confidence 455566677888888899999999999999999999999999999999999998888877765554
No 56
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=50.64 E-value=13 Score=37.87 Aligned_cols=145 Identities=29% Similarity=0.385 Sum_probs=24.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchh-hhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHH
Q psy444 244 IKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE-VLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322 (495)
Q Consensus 244 ikqlmseiaskeesmkklikqnnelverlnsveprie-vltkdiqikteklhklaeeheeliqtrrnekkleldemreei 322 (495)
+.+|-.+.....+-...|..+--+|.++|.--+.-++ .+...--+....+..+..|...|-+-++.--+.=+...|.||
T Consensus 216 ~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei 295 (619)
T PF03999_consen 216 LQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEI 295 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444455555666666777777765444444 233333344455666666776666666555555566677777
Q ss_pred HHHHHHhhhhhhhhhcc---c----hh--hhcchHHHHHHHHhhhhhhH---HHHhHHHHHHHHHHHHhccccceeec
Q psy444 323 KRLEEVLKENECERAGL---L----TK--EKRKDEEIKRLKEEIGKYKM---LVQERDQLANMLEEYKQNAKDVVYYE 388 (495)
Q Consensus 323 krleevlkeneceragl---l----tk--ekrkdeeikrlkeeigkykm---lvqerdqlanmleeykqnakdvvyye 388 (495)
..|=..+--.+-+|.-+ . +. =..-+.||.+|+++...++- +|+.|..+.+-..++...++|--.|-
T Consensus 296 ~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~ 373 (619)
T PF03999_consen 296 EELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLN 373 (619)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG-
T ss_pred HHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc
Confidence 66654443222222111 0 10 02346789999998888775 46677777766666667777776665
No 57
>KOG0976|consensus
Probab=50.11 E-value=4.6e+02 Score=30.28 Aligned_cols=165 Identities=25% Similarity=0.344 Sum_probs=91.5
Q ss_pred hhhhhccccchhhhcccchhhhhhhhccchhHHhhhhhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhh-hhh
Q psy444 125 YEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKEN-EAN 203 (495)
Q Consensus 125 yeeeidnrdtrikeltsdtseidkivsrkdaeieklskeneklsmdlvfkenqevtelmkevdkkdnyietllken-ean 203 (495)
|++....-.|+|.+++|...+..+-+|.+..+|-..-+. .-..|.++|++-.+. .|++.+| +.|
T Consensus 132 ~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~--------L~nk~~~lt~~~~q~-------~tkl~e~~~en 196 (1265)
T KOG0976|consen 132 AQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED--------LHDKNEELNEFNMEF-------QTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH--------HhhhhhHHhHHHHHH-------HHHHHHHHHHH
Confidence 344444445566666665555555555555555332211 112234444443332 2333332 223
Q ss_pred hhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhH-HHHHHHHHHHhc----------hHHHHHHHHHHhHHHHHhh
Q psy444 204 VKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNA-SKIKQLMSEIAS----------KEESMKKLIKQNNELVERL 272 (495)
Q Consensus 204 vklckelekqvhelninkeldrlnheiihkddeirqna-skikqlmseias----------keesmkklikqnnelverl 272 (495)
-.+-.-+++--..+..|.+..-+ .|+|++.+|+. +...||-|...- -+|..-.|---|.++.|..
T Consensus 197 ~~le~k~~k~~e~~~~nD~~sle----~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m 272 (1265)
T KOG0976|consen 197 KALEEKLEKFKEDLIEKDQKSLE----LHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKM 272 (1265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555444332 46788888875 345566544321 1222223444567777888
Q ss_pred hccccchhhhccchhhchHHhhhhHHHHHHHHHhhh
Q psy444 273 NSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRR 308 (495)
Q Consensus 273 nsveprievltkdiqikteklhklaeeheeliqtrr 308 (495)
+..+..-.||++...-|++-...+.++.+.+-|||-
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t 308 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRT 308 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999988899988888899888888874
No 58
>KOG0244|consensus
Probab=48.79 E-value=83 Score=35.29 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=59.5
Q ss_pred chhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHH
Q psy444 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAE 298 (495)
Q Consensus 219 inkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklae 298 (495)
+..||..++-.+--|+..+|+-++.+.+.-.--.+.|..+..|+. ++-.++.-.+-|-..+..-.-.-.+|++
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~-------e~~~le~E~~~l~~el~~~~~~~~kl~e 544 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEA-------EKSPLESERSRLRNELNVFNRLAAKLGE 544 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHH-------HhcccccccHHHHHHHHhhhHHHHHhhh
Confidence 556666666666666666666555433322222223333333222 2222221111111111111113445666
Q ss_pred HHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhh
Q psy444 299 EHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYK 361 (495)
Q Consensus 299 eheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkyk 361 (495)
++...++ .+..+|.-|+..+. .++||+..-.+-.+..++|+.||--.|
T Consensus 545 er~qklk-----------~le~q~s~lkk~l~----~~~~l~~~~~~~~~~~~kl~~ei~~~k 592 (913)
T KOG0244|consen 545 ERVQKLK-----------SLETQISLLKKKLS----SQRKLIKPKPKSEGIRAKLLQEIHIAK 592 (913)
T ss_pred HHHHHHH-----------HHHHHHHHHHHhhH----HHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 6555443 34455665555554 477888777777777778887775443
No 59
>KOG4593|consensus
Probab=48.69 E-value=4.2e+02 Score=29.40 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccch
Q psy444 40 LRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANT 81 (495)
Q Consensus 40 lretmkqkddkllelaktartkdqelrdlrqqtqqsvtkant 81 (495)
.|.-|++.+++.+++..++-.+++++-.||++.-+|..+++.
T Consensus 131 ~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 131 NRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999887754
No 60
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.62 E-value=3e+02 Score=27.39 Aligned_cols=234 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhh
Q psy444 202 ANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEV 281 (495)
Q Consensus 202 anvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvepriev 281 (495)
+-.....+++.... .+-+++++++-.. +++++-++.+...-.+...+---|...+..-.+--.-+|.--.-+--
T Consensus 3 ~~~~~~~E~e~K~~--~lk~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 3 AMLDKLDELELKRK--QLKEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred hHHHhhhHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHh------hhhhhhhhccchhhhcchHHHHHHHH
Q psy444 282 LTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVL------KENECERAGLLTKEKRKDEEIKRLKE 355 (495)
Q Consensus 282 ltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevl------keneceraglltkekrkdeeikrlke 355 (495)
--.+|-.++..|.+-+.++-+.+.-.+ -....+...+.+|.+|+... .+-|-+..+-++.-...-+.++...+
T Consensus 77 kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 77 KRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHhccccce-----eeccccchhhh--hhhhhcchhhhhccccccchhhhhhHHHHhhh
Q psy444 356 EIGKYKMLVQERDQLANMLEEYKQNAKDVV-----YYEDMKDKLEV--ELDKLRMESAEKIKLRDSELDKKHEVIAEMKL 428 (495)
Q Consensus 356 eigkykmlvqerdqlanmleeykqnakdvv-----yyedmkdklev--eldklrmesaekiklrdseldkkheviaemkl 428 (495)
.-++.+-+..+-|.+-.-..+|..-+.-.+ |+++|..-++- ++.+-.-+--+++-=..-..|..|+-+-...-
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred cchhhcchhhhHHH
Q psy444 429 SMEANNRRIQDLEE 442 (495)
Q Consensus 429 smeannrriqdlee 442 (495)
.....+.+|..|..
T Consensus 236 elre~~k~ik~l~~ 249 (294)
T COG1340 236 ELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHH
No 61
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=46.97 E-value=97 Score=21.61 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=31.5
Q ss_pred cCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 232 hkddeirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
+.-+.+..-..+.+.+..+|.+....+..+...-..|...
T Consensus 31 ~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~ 70 (105)
T PF00435_consen 31 SDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDS 70 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345677777889999999999999999888877777443
No 62
>KOG0996|consensus
Probab=46.08 E-value=5.6e+02 Score=30.15 Aligned_cols=108 Identities=27% Similarity=0.366 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhccccceeeccccchh-hhhhhhhcchhhhhccccccchh----hhhhHHHHhhhcchhhcchhhhHHH
Q psy444 368 DQLANMLEEYKQNAKDVVYYEDMKDKL-EVELDKLRMESAEKIKLRDSELD----KKHEVIAEMKLSMEANNRRIQDLEE 442 (495)
Q Consensus 368 dqlanmleeykqnakdvvyyedmkdkl-eveldklrmesaekiklrdseld----kkheviaemklsmeannrriqdlee 442 (495)
..+++|-|---|--.|+..||..-+.+ +-.+. ++|.+-...++ -.-.||+|..-..+--+.|..+|+-
T Consensus 1045 l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~-------e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~ 1117 (1293)
T KOG0996|consen 1045 LSLCNMTETRPQIELDVESPEELEAEMLEDNIN-------EKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEK 1117 (1293)
T ss_pred cccccchhhccccccccCChHHHHhhhcHhhHH-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655566667777777644333 11111 12222211111 1234677766666666666666653
Q ss_pred HHhhccccccccchhHHHHH-HHhccCccchHHHHHhhhhhhhhh
Q psy444 443 QLAENNAWINEQDLKIQEIQ-RTLLEPIEPLSELVMKRRNIFQTL 486 (495)
Q Consensus 443 qlaennawineqdlkiqeiq-rtllepieplselvmkrrnifqtl 486 (495)
-....+. ---+.++++ |.|-|-.+.+..+-|+-.-+||++
T Consensus 1118 ~t~kr~~----~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmI 1158 (1293)
T KOG0996|consen 1118 FTQKRDE----HREKLEELRKRRLDEFMAGFNIISMKLKEMYQMI 1158 (1293)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 111222332 334444455555555555556654
No 63
>PRK09039 hypothetical protein; Validated
Probab=45.80 E-value=1.7e+02 Score=28.33 Aligned_cols=149 Identities=25% Similarity=0.319 Sum_probs=75.6
Q ss_pred ccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHHHhccccceeecccc
Q psy444 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMK 391 (495)
Q Consensus 312 kleldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmleeykqnakdvvyyedmk 391 (495)
.-+|+++..+|..|-++|.-+.-..+ +-+.++..+... |..+-..|+.|.+.+..- ++ ..
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~-------~l~~~l~~l~~~---l~~a~~~r~~Le~~~~~~---------~~-~~ 111 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQ-------DLQDSVANLRAS---LSAAEAERSRLQALLAEL---------AG-AG 111 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh---------hh-hc
Confidence 34577777777777776654433222 224455555543 446777777776655421 11 11
Q ss_pred chhhhhhhhhcchhhhhccccccchhhhhhHHHHhhhcchhhcchhhhHHHH-------HhhccccccccchhHHHHHHH
Q psy444 392 DKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQ-------LAENNAWINEQDLKIQEIQRT 464 (495)
Q Consensus 392 dkleveldklrmesaekiklrdseldkkheviaemklsmeannrriqdleeq-------laennawineqdlkiqeiqrt 464 (495)
.-++..+..+. .+|+.....+++..--+..-|+.|..|+.| |+.-.+=..++..+|.++++.
T Consensus 112 ~~~~~~~~~l~-----------~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 112 AAAEGRAGELA-----------QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred chHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222221 223333333333333333334444444444 444444445566677777766
Q ss_pred hccCccc-hHHHHHhhhhhhhhhhhhhc
Q psy444 465 LLEPIEP-LSELVMKRRNIFQTLDLILG 491 (495)
Q Consensus 465 llepiep-lselvmkrrnifqtldlilg 491 (495)
|-.-+.- ..+|---|.++|..|--++|
T Consensus 181 L~~a~~~~~~~l~~~~~~~~~~l~~~~~ 208 (343)
T PRK09039 181 LNVALAQRVQELNRYRSEFFGRLREILG 208 (343)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 6555533 55666778888877743443
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.05 E-value=84 Score=31.17 Aligned_cols=91 Identities=30% Similarity=0.482 Sum_probs=65.3
Q ss_pred chhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhc-hHHhhhhH
Q psy444 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK-TEKLHKLA 297 (495)
Q Consensus 219 inkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqik-teklhkla 297 (495)
-|..+..|..++.-|-++...--..|-+|+++|+..+...+.+--.|.+|.-.|.. +|++|-. +..|+.|.
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------SKESQRQLQAELQELQ 282 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 46677888888888888887778899999999999999999999999999988864 4555532 23355555
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHHH
Q psy444 298 EEHEELIQTRRNEKKLELDEMREEIKRL 325 (495)
Q Consensus 298 eeheeliqtrrnekkleldemreeikrl 325 (495)
+.+.|... -|-|.++|+|.+
T Consensus 283 dkY~E~~~--------mL~EaQEElk~l 302 (306)
T PF04849_consen 283 DKYAECMA--------MLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHH--------HHHHHHHHHHHh
Confidence 55544432 244555666554
No 65
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.00 E-value=58 Score=25.51 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=17.8
Q ss_pred eeehhhhhhccccchhhhcccchhhhhhhhccchhHHhhh
Q psy444 121 LKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKL 160 (495)
Q Consensus 121 lkvqyeeeidnrdtrikeltsdtseidkivsrkdaeiekl 160 (495)
+...+++-++.-+.|+..+......+++..+...+++..+
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445444444444444444444444333
No 66
>KOG0612|consensus
Probab=43.96 E-value=6.1e+02 Score=29.94 Aligned_cols=23 Identities=30% Similarity=0.370 Sum_probs=17.8
Q ss_pred hhhhHHHHHhhccccccccchhH
Q psy444 436 RIQDLEEQLAENNAWINEQDLKI 458 (495)
Q Consensus 436 riqdleeqlaennawineqdlki 458 (495)
|+|+-|.|.++--.|++++----
T Consensus 694 ~L~~~e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 694 RLQDKEAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHhhHHHHHHHHHHHhcccccHH
Confidence 66777889999999998875443
No 67
>KOG0250|consensus
Probab=43.84 E-value=5.7e+02 Score=29.56 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred hhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHH
Q psy444 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEE 299 (495)
Q Consensus 220 nkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaee 299 (495)
-++|..+.|+|-++-+.+-.--.+|+.....+.+-...|+..=++-++++.--+.-.+.|+-+-+|.+-+--....+-++
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777666555555566666666666666666666777777777777777777777766554444444333
Q ss_pred HHHHHHhhhhccccccHHHHHHHHHHHHHh
Q psy444 300 HEELIQTRRNEKKLELDEMREEIKRLEEVL 329 (495)
Q Consensus 300 heeliqtrrnekkleldemreeikrleevl 329 (495)
..+ ++..-++.|-+.|.++..|..+++-+
T Consensus 360 ~~~-~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 360 IRE-IENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 34445556666777777776666544
No 68
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.24 E-value=32 Score=27.84 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=43.9
Q ss_pred hhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccc
Q psy444 223 LDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVE 276 (495)
Q Consensus 223 ldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsve 276 (495)
|..+|...+++-..+.+.|+.+..-+..+..+-++++..++|-+.+-..+...|
T Consensus 26 Le~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999999888888877555444443
No 69
>KOG0976|consensus
Probab=43.05 E-value=5.8e+02 Score=29.49 Aligned_cols=65 Identities=29% Similarity=0.413 Sum_probs=38.2
Q ss_pred hhhcchhHHHHHHHHhhccchhhhHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHH---HhhhhccchHH
Q psy444 12 WHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQT---QQSVTKANTCE 83 (495)
Q Consensus 12 whtkiseaellvkqieyknnqllefeqelretmkqkddkllelaktartkdqelrdlrqqt---qqsvtkantce 83 (495)
+.|+.+++--+ ||++.+.-+.+++.|..+|.+.+++.+.--+...-+...+|-+ |---..-.||.
T Consensus 185 ~~tkl~e~~~e-------n~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 185 FQTKLAEANRE-------KKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence 34555555444 4555555677899999999999998765444333333444433 33333445664
No 70
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.88 E-value=76 Score=27.78 Aligned_cols=97 Identities=33% Similarity=0.453 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccch
Q psy444 207 CKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI 286 (495)
Q Consensus 207 ckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdi 286 (495)
|-++..++-.++ .++..+.-++-.....|+.-...+.+|-.+|...++.++..-+.+..+-.-+-+ |.--.
T Consensus 90 ~~el~~~L~~~~--~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~-------L~l~~ 160 (194)
T PF08614_consen 90 KGELAQQLVELN--DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA-------LQLQL 160 (194)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred cccccccccccc--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 344444444332 233444444444444444444444444444444444444444333333222221 11122
Q ss_pred hhchHHhhhhHHHHHHHHHhhhhccc
Q psy444 287 QIKTEKLHKLAEEHEELIQTRRNEKK 312 (495)
Q Consensus 287 qikteklhklaeeheeliqtrrnekk 312 (495)
-.-.+++.+|-.|+.+|++.--..+.
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23457788888888888876543333
No 71
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.12 E-value=2e+02 Score=23.67 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=35.6
Q ss_pred HhhccchhhhHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Q psy444 26 IEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKY 100 (495)
Q Consensus 26 ieyknnqllefeqelretmkqkddkllelaktartkdqelrdlrqqtqqsvtkantceqhlekikkefkelqeky 100 (495)
+-..-+++..+.+....++. ....+|..--.+.+++..+|.+++...... ..++.+|.++...|
T Consensus 22 ~v~~l~~~~~~~~~~~~l~~----~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~-------~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 22 FVKSLPQVQELQQEREELLA----ENEELAEQNLSLEPELEELRSQLQELYEEL-------KELESEYQEKEQQQ 85 (150)
T ss_dssp HGGGGS--HHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHH----HHHHHHHHhcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44445556666666555554 355677777778899999999988665544 34444444444433
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=40.63 E-value=4.8e+02 Score=27.76 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHH
Q psy444 178 EVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEES 257 (495)
Q Consensus 178 evtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskees 257 (495)
++..|.++++.-..=+...++.|+.--.|+.+.+.++.++ ...+.++.- .+-...+|+..+.|-...
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~EL--E~~le~~~e-----------~~~D~~kLLe~lqsdk~t 154 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAEL--EEELERLQE-----------QQEDRQKLLEQLQSDKAT 154 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----------HHHHHHHHHhhhcccchH
Confidence 3445556655544445556666666666677777766665 233444432 222345678888888889
Q ss_pred HHHHHHHhHHHHHhhhccccchhhhccchhhchHHh
Q psy444 258 MKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKL 293 (495)
Q Consensus 258 mkklikqnnelverlnsveprievltkdiqiktekl 293 (495)
....+.||-+|.+.|-.+.-++..||.|----|.+|
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 999999999999999999999988887732224444
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.50 E-value=3.2e+02 Score=25.80 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=19.8
Q ss_pred HHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHH
Q psy444 267 ELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELI 304 (495)
Q Consensus 267 elverlnsveprievltkdiqikteklhklaeeheeli 304 (495)
.|.+.+..+.---.+|+++++.-.+-+.++.+.|..|.
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~ 190 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELE 190 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555443
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.20 E-value=1.1e+02 Score=26.42 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhH
Q psy444 315 LDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQER 367 (495)
Q Consensus 315 ldemreeikrleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqer 367 (495)
.+++...+|.|+.-....+++-.+|-.+-..-..++..+.+.++..+-.+.+-
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35566777777777766666666665555555555555555555444444333
No 75
>KOG0243|consensus
Probab=40.16 E-value=6.3e+02 Score=29.07 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHhchHHHH--HHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHh
Q psy444 238 RQNASKIKQLMSEIASKEESM--KKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQT 306 (495)
Q Consensus 238 rqnaskikqlmseiaskeesm--kklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqt 306 (495)
|.-.+.+.+.|..+.-....+ -.+..-++..+--+|+++-.++-.....+-....++.-...+.+....
T Consensus 627 r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l 697 (1041)
T KOG0243|consen 627 RDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSL 697 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344444545444443322211 123333444555566666666666666655555555444444444443
No 76
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=39.66 E-value=3.2e+02 Score=25.49 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=81.3
Q ss_pred HHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHH
Q psy444 245 KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKR 324 (495)
Q Consensus 245 kqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikr 324 (495)
..+..++..-..++.....-++.+...+++..|-+.+|..+..- |.+ .+..+
T Consensus 129 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~----l~~-------~~Ps~----------------- 180 (342)
T cd08915 129 KELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKE----LKA-------FIPSP----------------- 180 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHH----HHH-------hCCCc-----------------
Confidence 34555555555666666667777888888888888888765422 111 11100
Q ss_pred HHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHHHhccccceeeccccchhhhhhhhhcch
Q psy444 325 LEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRME 404 (495)
Q Consensus 325 leevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmleeykqnakdvvyyedmkdkleveldklrme 404 (495)
.+-++ ..-...+..|+.-+.+...+.++|+++.+.|++-.++ .|+..+|-....+..-.
T Consensus 181 ------------~~~~~--~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~-------ddI~~~ll~~~~~~~~~ 239 (342)
T cd08915 181 ------------YPALD--PEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRN-------NDILPKLITEYKKNGTT 239 (342)
T ss_pred ------------cccCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCCcHHHHHHhhccccc
Confidence 00000 0112456677777777888888888888888653222 34555554443322100
Q ss_pred hhhhccccccchhhhhhHHHHhhhcchhhcchhhhHHHHHh
Q psy444 405 SAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLA 445 (495)
Q Consensus 405 saekiklrdseldkkheviaemklsmeannrriqdleeqla 445 (495)
..+ .+-..+|.|-......+.-+..+...-++++....+
T Consensus 240 ~~e--~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~ 278 (342)
T cd08915 240 EFE--DLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQ 278 (342)
T ss_pred hhH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 244556655445555666666666655665554433
No 77
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.62 E-value=1.4e+02 Score=26.18 Aligned_cols=102 Identities=29% Similarity=0.406 Sum_probs=43.8
Q ss_pred hhHHhhhhhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccC
Q psy444 154 DAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHK 233 (495)
Q Consensus 154 daeieklskeneklsmdlvfkenqevtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihk 233 (495)
-.|+..+.+.+..++-- +...|.++.++-++...+..=|..|-.++..--.-|+.++..+.+.+- -+..++-
T Consensus 80 ~~ELael~r~~~el~~~-L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k--~~e~l~D----- 151 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQ-LVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK--ANEILQD----- 151 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----
T ss_pred ccccccccccccccccc-ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----
Confidence 34444444555444332 334555666666666666667777777766666666777766665532 2222222
Q ss_pred chHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhh
Q psy444 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERL 272 (495)
Q Consensus 234 ddeirqnaskikqlmseiaskeesmkklikqnnelverl 272 (495)
|+ -.|--+...-++.+.+|=+.|.+||+|+
T Consensus 152 --E~-------~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 152 --EL-------QALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp --HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222355667889999999999999997
No 78
>KOG0018|consensus
Probab=37.13 E-value=7.3e+02 Score=28.92 Aligned_cols=111 Identities=25% Similarity=0.368 Sum_probs=68.7
Q ss_pred HHHHHHHhhcchhHHHHHHhhhh----hhhhHHHHHHHHhh----hhcchhhh-------------------hhhhcccc
Q psy444 179 VTELMKEVDKKDNYIETLLKENE----ANVKLCKELEKQVH----ELNINKEL-------------------DRLNHEII 231 (495)
Q Consensus 179 vtelmkevdkkdnyietllkene----anvklckelekqvh----elninkel-------------------drlnheii 231 (495)
+...-+..+....||+.+=++-. +--.+|++.+..-+ ++|+++.. +-+|.+.-
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r 391 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMR 391 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344455556667776655533 33446777776666 56665443 24444444
Q ss_pred cCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhc
Q psy444 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK 289 (495)
Q Consensus 232 hkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqik 289 (495)
-+-+....--++-.++-+.+-....|...+-++++.|...++|...-.+-+..|+.-.
T Consensus 392 ~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l 449 (1141)
T KOG0018|consen 392 SDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSL 449 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Confidence 4444444444455566677777788888888888988888888877777666666543
No 79
>KOG0018|consensus
Probab=36.97 E-value=7.4e+02 Score=28.91 Aligned_cols=22 Identities=45% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q psy444 90 KKEFKELQEKYQRDLNQKTETI 111 (495)
Q Consensus 90 kkefkelqekyqrdlnqkteti 111 (495)
.|++++.-++||+-.+.+....
T Consensus 193 aK~~k~eaeky~~lkde~~~~q 214 (1141)
T KOG0018|consen 193 AKEGKEEAEKYQRLKDEKGKAQ 214 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 4567788889988777665543
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.95 E-value=1.7e+02 Score=27.72 Aligned_cols=93 Identities=33% Similarity=0.472 Sum_probs=57.8
Q ss_pred HHHHHHHH---HHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hhhhhccccceeeehhhhhhc
Q psy444 64 ELRDLRQQ---TQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTE----------TIRSLTNKNLELKVQYEEEID 130 (495)
Q Consensus 64 elrdlrqq---tqqsvtkantceqhlekikkefkelqekyqrdlnqkte----------tirsltnknlelkvqyeeeid 130 (495)
++-+||.| +||.+-+|-+-+.-++.+|-..+.|.+.|..-+.|--. -|-.|-+.|-.+.+ ++|
T Consensus 44 e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~----e~~ 119 (193)
T PF14662_consen 44 EITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLA----ERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----hhh
Confidence 34445443 68889999999999999999999999999877766432 24444444444332 344
Q ss_pred cccchhhhcccchh-------hhhhhhccchhHHhhh
Q psy444 131 NRDTRIKELTSDTS-------EIDKIVSRKDAEIEKL 160 (495)
Q Consensus 131 nrdtrikeltsdts-------eidkivsrkdaeiekl 160 (495)
.--.|+++|.+-+. +.+.+++.+|+.+..-
T Consensus 120 ~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~ 156 (193)
T PF14662_consen 120 GLKKRSKELATEKATLQRQLCEFESLICQRDAILSER 156 (193)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666644322 3445555566555433
No 81
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=36.62 E-value=3.2e+02 Score=24.58 Aligned_cols=86 Identities=30% Similarity=0.474 Sum_probs=57.3
Q ss_pred chHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhc-hHHhhhhHHHHHHHHHhhhhccc
Q psy444 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK-TEKLHKLAEEHEELIQTRRNEKK 312 (495)
Q Consensus 234 ddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqik-teklhklaeeheeliqtrrnekk 312 (495)
+..+-.+.-.+.+.++.++|+.+..+.++|..++|..-| .|.. ...+++- .-|++-+-..-.++.++
T Consensus 32 ~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YL---DP~~---~e~~~l~~~~K~~~ILa~e~~i~~~------ 99 (174)
T PF07426_consen 32 PEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYL---DPNF---IEEIQLPDSAKLQIILAEEDEIKST------ 99 (174)
T ss_pred chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHc---Cchh---hhhcccchHHHHHHHHHccHHHHHH------
Confidence 445556677888999999999999999999999986655 4442 1223322 23655443333444443
Q ss_pred cccHHHHHHHHHHHHHhhhhhh
Q psy444 313 LELDEMREEIKRLEEVLKENEC 334 (495)
Q Consensus 313 leldemreeikrleevlkenec 334 (495)
.++-+.|+.|+.||.....
T Consensus 100 ---~~~Leki~~L~pvL~se~i 118 (174)
T PF07426_consen 100 ---AELLEKIKSLEPVLDSESI 118 (174)
T ss_pred ---HHHHHHHHHhhhhcCcHHH
Confidence 3566788999998876554
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.59 E-value=2.2e+02 Score=27.22 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=11.5
Q ss_pred hcchHHHHHHHHhhhhhhHHHHhHHHHH
Q psy444 344 KRKDEEIKRLKEEIGKYKMLVQERDQLA 371 (495)
Q Consensus 344 krkdeeikrlkeeigkykmlvqerdqla 371 (495)
.+-++++.-+.++.- -+.++|+.|.
T Consensus 145 ~~~e~e~~~i~e~~~---~~~~~~~~L~ 169 (239)
T COG1579 145 ARLEEEVAEIREEGQ---ELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 334445544444332 2345566554
No 83
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=34.52 E-value=2.7e+02 Score=23.99 Aligned_cols=65 Identities=25% Similarity=0.504 Sum_probs=46.5
Q ss_pred HHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy444 37 EQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKAN----TCEQHLEKIKKEFKELQEKYQRDLNQK 107 (495)
Q Consensus 37 eqelretmkqkddkllelaktartkdqelrdlrqqtqqsvtkan----tceqhlekikkefkelqekyqrdlnqk 107 (495)
-+|.|+.+...-.++.|-|+ ..+|.+|+..+..+-+.. .-+....+..+++..+..+|-..+.+-
T Consensus 88 T~E~R~~l~k~~k~~~E~~k------~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 88 TEERRKELVKQAKKIAEEAK------VSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667766655556666665 578999998888776665 567777788888888888887766543
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.38 E-value=5.1e+02 Score=26.31 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccceee-ehhhhhhccccchh
Q psy444 86 LEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK-VQYEEEIDNRDTRI 136 (495)
Q Consensus 86 lekikkefkelqekyqrdlnqktetirsltnknlelk-vqyeeeidnrdtri 136 (495)
++.|-+-+++++..|-..|+.-...++.+...+..+. +..+.+|..-..+|
T Consensus 214 ~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 214 MEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Confidence 3444455566666666667777777777777776665 23444444333333
No 85
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.19 E-value=41 Score=27.32 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=13.6
Q ss_pred hhhhhccccceeeehhhhhhc
Q psy444 110 TIRSLTNKNLELKVQYEEEID 130 (495)
Q Consensus 110 tirsltnknlelkvqyeeeid 130 (495)
++-.|-.....+|-+||+||.
T Consensus 47 ~v~eLE~~h~kmK~~YEeEI~ 67 (79)
T PF08581_consen 47 KVYELEQAHRKMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455567888999884
No 86
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.42 E-value=2.1e+02 Score=22.67 Aligned_cols=61 Identities=38% Similarity=0.605 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhhhhccchhh-------hcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q psy444 315 LDEMREEIKRLEEVLKENECERAGLLTKE-------KRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYK 378 (495)
Q Consensus 315 ldemreeikrleevlkeneceraglltke-------krkdeeikrlkeeigkykmlvqerdqlanmleeyk 378 (495)
-..+.+.+-++...|++|+-.+..-+-+. ..+..+|++|..+|+.-+ .++..+..-+..|+
T Consensus 41 e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~---~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 41 EQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELK---SEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34566777788888998887765544322 235667778877776543 45555655555554
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.19 E-value=6.6e+02 Score=26.90 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=11.5
Q ss_pred hhccchHHHHHHHHHHHHHHHH
Q psy444 76 VTKANTCEQHLEKIKKEFKELQ 97 (495)
Q Consensus 76 vtkantceqhlekikkefkelq 97 (495)
+||+.-+...++++.++..+|.
T Consensus 135 ~~ka~~lQ~qlE~~qkE~eeL~ 156 (546)
T PF07888_consen 135 TTKAQLLQNQLEECQKEKEELL 156 (546)
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554
No 88
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.56 E-value=1.6e+02 Score=24.53 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=27.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy444 76 VTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLT 115 (495)
Q Consensus 76 vtkantceqhlekikkefkelqekyqrdlnqktetirslt 115 (495)
......-.+-++.-.+..++.|.+|.|.|..-.+++..|+
T Consensus 23 ~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~ 62 (132)
T PF07926_consen 23 EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQ 62 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333334445566666778888999999988888877775
No 89
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.13 E-value=82 Score=25.99 Aligned_cols=50 Identities=34% Similarity=0.436 Sum_probs=39.3
Q ss_pred HHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHH
Q psy444 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQ 305 (495)
Q Consensus 256 esmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliq 305 (495)
.....++.+|-.+.++.-+.+|+++-+-..++.+...+..|..++.++.+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999988899999999999999999999999999888776
No 90
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.03 E-value=3.8e+02 Score=28.81 Aligned_cols=125 Identities=26% Similarity=0.388 Sum_probs=73.4
Q ss_pred HHHHHHHhhhhcchhhhhhhhcccccC--chHHhhhHHHHHHHHHHHhchHHHHHHHHHH-----------hHHHHHhhh
Q psy444 207 CKELEKQVHELNINKELDRLNHEIIHK--DDEIRQNASKIKQLMSEIASKEESMKKLIKQ-----------NNELVERLN 273 (495)
Q Consensus 207 ckelekqvhelninkeldrlnheiihk--ddeirqnaskikqlmseiaskeesmkklikq-----------nnelverln 273 (495)
|.+|+..+|.|.--++-|+.+-.-.-+ -+|-++-++-=+||-.|=.++-+.-.+.-+. ..-+-.|..
T Consensus 469 ne~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~ 548 (697)
T PF09726_consen 469 NEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRR 548 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHH
Confidence 456777777777777776654333222 2455565665666666654332211111110 011333555
Q ss_pred ccccchhhhccchhhchHHhhhhHHHHHHHHHh-hhhccccc-----cHHHHHHHHHHHHHhhh
Q psy444 274 SVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQT-RRNEKKLE-----LDEMREEIKRLEEVLKE 331 (495)
Q Consensus 274 sveprievltkdiqikteklhklaeeheeliqt-rrnekkle-----ldemreeikrleevlke 331 (495)
..|-.+--|..|...|.|.+..+-.+-.+|-.. +.+++..| |..|++.-..||.-|..
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 556667777788888888888887777776665 55555443 56788888888876653
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.96 E-value=2.2e+02 Score=24.08 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=5.4
Q ss_pred hhhhhhhhccccc
Q psy444 220 NKELDRLNHEIIH 232 (495)
Q Consensus 220 nkeldrlnheiih 232 (495)
+..+.++.+++.+
T Consensus 87 ~~~l~~l~~el~~ 99 (191)
T PF04156_consen 87 QQQLQQLQEELDQ 99 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 92
>PF15146 FANCAA: Fanconi anemia-associated
Probab=30.68 E-value=61 Score=33.75 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhchHH---HHHHHHHHhHHHHHhhhcc
Q psy444 240 NASKIKQLMSEIASKEE---SMKKLIKQNNELVERLNSV 275 (495)
Q Consensus 240 naskikqlmseiaskee---smkklikqnnelverlnsv 275 (495)
-..+||.|.|-|.+--| +.||.|+|.|+..--||.|
T Consensus 4 aGqrIKeLLSgIG~VsERvS~LK~avdqrN~aL~~LNqv 42 (435)
T PF15146_consen 4 AGQRIKELLSGIGDVSERVSSLKKAVDQRNQALTCLNQV 42 (435)
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999987554 7899999999988888864
No 93
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.56 E-value=1.7e+02 Score=27.53 Aligned_cols=65 Identities=38% Similarity=0.507 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhh
Q psy444 293 LHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIG 358 (495)
Q Consensus 293 lhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeeig 358 (495)
|..+..|-+.|.+.|+.- --+|...-..|..||.+++.-+-+|--....-.|.-+|+.+||.+|.
T Consensus 34 L~e~~kE~~~L~~Er~~h-~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAH-VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665432 22455567788899999987776665444444445555555554443
No 94
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=29.89 E-value=1.1e+02 Score=28.06 Aligned_cols=48 Identities=38% Similarity=0.532 Sum_probs=36.0
Q ss_pred hhcc-ccHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q psy444 57 TART-KDQELRDLRQQTQQS--VTKANTCEQHLEKIKKEFKELQEKYQRDLN 105 (495)
Q Consensus 57 tart-kdqelrdlrqqtqqs--vtkantceqhlekikkefkelqekyqrdln 105 (495)
++|. ....|-+|-+|.|.. ..++|||-+ |..|.+.++.||+.|..-+.
T Consensus 23 ~~~~~~~~dlv~la~~iq~Ad~~~~~~t~~k-L~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 23 VSRLGDPFDLVDLAQQIQKADSAMRANTCNK-LEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444 345677787777764 568899975 77999999999999977654
No 95
>KOG0962|consensus
Probab=29.16 E-value=1e+03 Score=28.12 Aligned_cols=326 Identities=24% Similarity=0.235 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHhhccchhhhHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhh----hccchHHHHHHHHH
Q psy444 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSV----TKANTCEQHLEKIK 90 (495)
Q Consensus 15 kiseaellvkqieyknnqllefeqelretmkqkddkllelaktartkdqelrdlrqqtqqsv----tkantceqhlekik 90 (495)
+|++-+.-++-++---++.-..+.+....++|-..--..+-+--.-.|.++-.+-+-.++-+ ++.--|+-|+.+++
T Consensus 252 ~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 252 KIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHH----------------------HHHh----------------------------hhhhhhhhhhhhccccce
Q psy444 91 KEFKELQE----------------------KYQR----------------------------DLNQKTETIRSLTNKNLE 120 (495)
Q Consensus 91 kefkelqe----------------------kyqr----------------------------dlnqktetirsltnknle 120 (495)
.+-..|.. +|++ --|-.++-+..++.+-..
T Consensus 332 ~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q 411 (1294)
T KOG0962|consen 332 EERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQ 411 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred eeehhhhhhccccchhhhcccchhhhhhhhccchhHHhhhhhhhcccccchhcccchHHHHHHHHhhcchhHHHHHHhhh
Q psy444 121 LKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKEN 200 (495)
Q Consensus 121 lkvqyeeeidnrdtrikeltsdtseidkivsrkdaeieklskeneklsmdlvfkenqevtelmkevdkkdnyietllken 200 (495)
++....+-..+-.+-++++|....++-..---++.-.- +|-.+.-..-...+--+..|+..++..+..+.+++.-
T Consensus 412 ~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~~s~ 486 (1294)
T KOG0962|consen 412 RKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKK-----LESKGLKDKSFQYEDSTDDLKKLDERLKEAERLLESA 486 (1294)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHhh
Q ss_pred hhhhh--------------------HHHHHHHHhhhhcchhhhh----hhhcccccCchHHhhhHHHHHHHHHHHhchHH
Q psy444 201 EANVK--------------------LCKELEKQVHELNINKELD----RLNHEIIHKDDEIRQNASKIKQLMSEIASKEE 256 (495)
Q Consensus 201 eanvk--------------------lckelekqvhelninkeld----rlnheiihkddeirqnaskikqlmseiaskee 256 (495)
..+.. +-+.+..++.-+|+..+.- .+--..-.|++.++.-++...++|....+-..
T Consensus 487 ~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~ 566 (1294)
T KOG0962|consen 487 EKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPL 566 (1294)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCc
Q ss_pred HHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhh
Q psy444 257 SMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECER 336 (495)
Q Consensus 257 smkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkenecer 336 (495)
.|. ++.+--..-+.+++++.-++++.+.-+...+-..+-+--+-.-|.+.++++-.+..|+.--|.-
T Consensus 567 ~~~-------------~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~ 633 (1294)
T KOG0962|consen 567 TND-------------RSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTI 633 (1294)
T ss_pred cch-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccch
Q ss_pred hccchhhhcchHHHHHHHHhhh
Q psy444 337 AGLLTKEKRKDEEIKRLKEEIG 358 (495)
Q Consensus 337 aglltkekrkdeeikrlkeeig 358 (495)
+-....-++-+.+|+......+
T Consensus 634 ~~~~~~le~l~~eie~~rk~l~ 655 (1294)
T KOG0962|consen 634 DEYLDLLERLKGEIEKARKDLA 655 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.02 E-value=26 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhhhHHHHHH
Q psy444 21 LLVKQIEYKNNQLLEFEQELR 41 (495)
Q Consensus 21 llvkqieyknnqllefeqelr 41 (495)
|+++.++|-.+||-.|+.+..
T Consensus 410 L~~kE~d~LR~~L~syd~e~~ 430 (722)
T PF05557_consen 410 LATKERDYLRAQLKSYDKEET 430 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 677888899999999988763
No 97
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.74 E-value=92 Score=28.05 Aligned_cols=59 Identities=29% Similarity=0.512 Sum_probs=37.7
Q ss_pred HhhhccccchhhhccchhhchHHhhhhHHH--HHHHHHhhhhccccccHHHHHHHHHHHHHhhhhh
Q psy444 270 ERLNSVEPRIEVLTKDIQIKTEKLHKLAEE--HEELIQTRRNEKKLELDEMREEIKRLEEVLKENE 333 (495)
Q Consensus 270 erlnsveprievltkdiqikteklhklaee--heeliqtrrnekkleldemreeikrleevlkene 333 (495)
+|+.-+++..+.++..|.-=.+.+..+|.. +-.|+|.|| |++||...|..||.-++.-|
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~-----e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRR-----EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444334444444443 457889988 79999999999999888743
No 98
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.61 E-value=2.1e+02 Score=23.52 Aligned_cols=13 Identities=46% Similarity=0.596 Sum_probs=6.6
Q ss_pred cHHHHHHHHHHHh
Q psy444 62 DQELRDLRQQTQQ 74 (495)
Q Consensus 62 dqelrdlrqqtqq 74 (495)
.++|+.|..+.++
T Consensus 5 ~~~l~~l~~~~~~ 17 (140)
T PRK03947 5 EQELEELAAQLQA 17 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 99
>KOG2273|consensus
Probab=27.91 E-value=5.9e+02 Score=24.99 Aligned_cols=109 Identities=29% Similarity=0.348 Sum_probs=56.8
Q ss_pred hhcccc-hHHHHHHHHhhcchhHHHHHHhhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHH
Q psy444 171 LVFKEN-QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMS 249 (495)
Q Consensus 171 lvfken-qevtelmkevdkkdnyietllkeneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlms 249 (495)
..|+++ ++++++...+++-..-+..+.+.....++.-.+|..-..+++ +-+.++.....+-+ ++-..-+.+...++
T Consensus 267 ~~~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g--~~~~~l~~~~~~~~-~l~~~~~~~~~~~~ 343 (503)
T KOG2273|consen 267 KKFKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELG--KALAQLSALEGETD-ELSEALSGLAKVIE 343 (503)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhchH-HHHHHHHHHHHHHH
Confidence 344443 778888888877777777766666665555555555555432 33444444433333 33333333333333
Q ss_pred HHhchHH------HHHHHHHHhHHHHHhhhccccchhhh
Q psy444 250 EIASKEE------SMKKLIKQNNELVERLNSVEPRIEVL 282 (495)
Q Consensus 250 eiaskee------smkklikqnnelverlnsveprievl 282 (495)
.++..-+ ..+.+..+-++++..+.++.--++-.
T Consensus 344 ~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r 382 (503)
T KOG2273|consen 344 SLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQR 382 (503)
T ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 22445555666666666555444433
No 100
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.47 E-value=36 Score=23.03 Aligned_cols=17 Identities=53% Similarity=0.690 Sum_probs=14.0
Q ss_pred chhhcchhhhHHHHHhh
Q psy444 430 MEANNRRIQDLEEQLAE 446 (495)
Q Consensus 430 meannrriqdleeqlae 446 (495)
|..--+||.|||.||++
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667899999999975
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.02 E-value=7e+02 Score=25.55 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=7.2
Q ss_pred hhhhhhhhcccccC
Q psy444 220 NKELDRLNHEIIHK 233 (495)
Q Consensus 220 nkeldrlnheiihk 233 (495)
..+++.++..+-..
T Consensus 404 e~el~~l~~~l~~~ 417 (650)
T TIGR03185 404 EEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHhcC
Confidence 34555555555443
No 102
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=26.31 E-value=4.9e+02 Score=23.49 Aligned_cols=223 Identities=27% Similarity=0.393 Sum_probs=0.0
Q ss_pred hhhhhhccccchhhhcccchhhhhhhhccchhHHhhhhhhhcccccchhcccc------hHHHHHHHHhhcchhHHHHHH
Q psy444 124 QYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKEN------QEVTELMKEVDKKDNYIETLL 197 (495)
Q Consensus 124 qyeeeidnrdtrikeltsdtseidkivsrkdaeieklskeneklsmdlvfken------qevtelmkevdkkdnyietll 197 (495)
+...++|.-..++..+.....+..+-...-.+++..|.....-+--+|=--+. +.+.++-+..|....-...|=
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhcccc
Q psy444 198 KENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP 277 (495)
Q Consensus 198 keneanvklckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsvep 277 (495)
..+...-.-|..||.|+ .+.+.-+...-+-..+++.+ ...+-......-+|+..++.
T Consensus 85 ~r~~~~eeri~~lE~~l--------------------~ea~~~~ee~e~k~~E~~rk---l~~~E~~Le~aEeR~e~~E~ 141 (237)
T PF00261_consen 85 NREQSDEERIEELEQQL--------------------KEAKRRAEEAERKYEEVERK---LKVLEQELERAEERAEAAES 141 (237)
T ss_dssp HHHHHHHHHHHHCHHHH--------------------HHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhch
Q ss_pred chhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhh
Q psy444 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357 (495)
Q Consensus 278 rievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkekrkdeeikrlkeei 357 (495)
+|..|-..+..-+..|..|-.-.+..-+. .+.+.+.|+.|..-|++.++..-..-..-.+-...|.+|..++
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~r--------e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASER--------EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h----hhhHHHHhHHHHHHHHHHH
Q psy444 358 G----KYKMLVQERDQLANMLEEY 377 (495)
Q Consensus 358 g----kykmlvqerdqlanmleey 377 (495)
. +|+.+-.+-|+..+=|.+|
T Consensus 214 ~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 214 EKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
No 103
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=25.92 E-value=3.9e+02 Score=26.80 Aligned_cols=94 Identities=30% Similarity=0.461 Sum_probs=50.6
Q ss_pred HHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhh----hhhccchhhhcchHHHHHHHHhhhhhhHHHHh
Q psy444 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENEC----ERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQE 366 (495)
Q Consensus 291 eklhklaeeheeliqtrrnekkleldemreeikrleevlkenec----eraglltkekrkdeeikrlkeeigkykmlvqe 366 (495)
+.+..|+.....+.. -+.++.+..++..|++.+..... .++.-+ -.+...|+.-+..|+-+-+.
T Consensus 7 ~~~~~~~~~~~~~~~------~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l------~ke~~~L~~iv~~~~~l~~~ 74 (367)
T PRK00578 7 ERLKDLDEKLENIRG------VLDVDALKERLEELEAEAEDPDFWNDQERAQKV------TKELSSLKAKLDTLEELRQR 74 (367)
T ss_pred HHHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHHhcCCccccCHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 345555555544443 46777888888888887754321 112111 23556666666666666666
Q ss_pred HHHHHHHHHHHHhccccceeeccccchhhhhhhhh
Q psy444 367 RDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL 401 (495)
Q Consensus 367 rdqlanmleeykqnakdvvyyedmkdkleveldkl 401 (495)
.+.+..+.+-.+. ..| .+|++-++.++..|
T Consensus 75 ~~e~~~~~ell~~-e~D----~el~~~a~~e~~~l 104 (367)
T PRK00578 75 LDDLEELLELAEE-EDD----EETLAEAEAELKAL 104 (367)
T ss_pred HHHHHHHHHHHhh-cCC----HHHHHHHHHHHHHH
Confidence 6665555544422 223 24555554444443
No 104
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=25.57 E-value=5.4e+02 Score=27.66 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=40.7
Q ss_pred hHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhccchhhh
Q psy444 265 NNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEK 344 (495)
Q Consensus 265 nnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceraglltkek 344 (495)
-.++.++++|+.+-|+-+. .|..-.-.+..-.|.|--+....++..||+|+..+-.-+.-..-.-+|
T Consensus 414 l~~v~eKVd~LpqqI~~vs-------~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~------ 480 (531)
T PF15450_consen 414 LKEVQEKVDSLPQQIEEVS-------DKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG------ 480 (531)
T ss_pred HHHHHHHHHhhhHHHHHHH-------HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh------
Confidence 3445555556666565443 222222234444566666666788999999999854332222112222
Q ss_pred cchHHHHH
Q psy444 345 RKDEEIKR 352 (495)
Q Consensus 345 rkdeeikr 352 (495)
||+.+|++
T Consensus 481 rkiaeiqg 488 (531)
T PF15450_consen 481 RKIAEIQG 488 (531)
T ss_pred hhHHHHHH
Confidence 66666654
No 105
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=25.34 E-value=4.7e+02 Score=24.44 Aligned_cols=45 Identities=42% Similarity=0.510 Sum_probs=28.1
Q ss_pred chhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhh
Q psy444 285 DIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337 (495)
Q Consensus 285 diqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkenecera 337 (495)
+++-+-+||..|-.|+-.|-.|-..- ..-|+-||+-|.+.+|.|-
T Consensus 114 ~~~~klekLe~LE~E~~rLt~~Q~~a--------e~Ki~~LE~KL~eEehqRK 158 (178)
T PF14073_consen 114 ELQAKLEKLEKLEKEYLRLTATQSLA--------ETKIKELEEKLQEEEHQRK 158 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776665554321 2346777777777777764
No 106
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=25.25 E-value=3.1e+02 Score=20.87 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy444 83 EQHLEKIKKEFKELQEKYQRD 103 (495)
Q Consensus 83 eqhlekikkefkelqekyqrd 103 (495)
..+.+++.+.|+++-..||.-
T Consensus 88 ~~q~~~L~~~f~~~m~~fq~~ 108 (117)
T smart00503 88 KAQTEKLRKKFKEVMNEFQRL 108 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888753
No 107
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=24.42 E-value=37 Score=26.90 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=23.2
Q ss_pred hccchhHHhhhhhhhcccccchhcccch
Q psy444 150 VSRKDAEIEKLSKENEKLSMDLVFKENQ 177 (495)
Q Consensus 150 vsrkdaeieklskeneklsmdlvfkenq 177 (495)
...--+||+.|.++|..|.++|+++...
T Consensus 23 L~~LH~EIe~Lq~~~~dL~~kL~m~~~~ 50 (60)
T PF14916_consen 23 LKGLHAEIERLQKRNKDLTFKLIMKQPS 50 (60)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCC
Confidence 3444689999999999999999998653
No 108
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.13 E-value=5.1e+02 Score=23.20 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=6.3
Q ss_pred hHHHHHHHHhh
Q psy444 177 QEVTELMKEVD 187 (495)
Q Consensus 177 qevtelmkevd 187 (495)
.+|..|.+.+|
T Consensus 33 ~dVi~L~e~Ld 43 (189)
T PF10211_consen 33 QDVIQLQEWLD 43 (189)
T ss_pred HHHHHHHHHHH
Confidence 45666665544
No 109
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.86 E-value=1.1e+02 Score=31.53 Aligned_cols=64 Identities=30% Similarity=0.420 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhc-------cccchhhh-------ccchhhchHHhhhhHHHHHHHHH
Q psy444 242 SKIKQLMSEIASKEESMKKLIKQNNELVERLNS-------VEPRIEVL-------TKDIQIKTEKLHKLAEEHEELIQ 305 (495)
Q Consensus 242 skikqlmseiaskeesmkklikqnnelverlns-------veprievl-------tkdiqikteklhklaeeheeliq 305 (495)
.++..|-.++.+-+....+|-.++..|-.+|.+ ..+++-|| ..+-+||...|..|-.|.+.|+.
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777788888888887777765 34444443 24445555666666666555554
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.63 E-value=1.2e+03 Score=27.28 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=5.0
Q ss_pred HHHHHHHHh
Q psy444 371 ANMLEEYKQ 379 (495)
Q Consensus 371 anmleeykq 379 (495)
.+++.+|.+
T Consensus 536 ~~~~~~~~~ 544 (1486)
T PRK04863 536 ERLLAEFCK 544 (1486)
T ss_pred HHHHHHHHH
Confidence 345666655
No 111
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.78 E-value=3.5e+02 Score=20.54 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=31.3
Q ss_pred CchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 233 KDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 233 kddeirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
.++++++-...+..++.++....+.-..++.+.-..+..
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~ 120 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQ 120 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888889988888888888888776665554
No 112
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.73 E-value=1.5e+02 Score=22.66 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=3.1
Q ss_pred HHHhhhhh
Q psy444 353 LKEEIGKY 360 (495)
Q Consensus 353 lkeeigky 360 (495)
|++.+..|
T Consensus 98 f~~~m~~f 105 (117)
T smart00503 98 FKEVMNEF 105 (117)
T ss_pred HHHHHHHH
Confidence 33333333
No 113
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=22.00 E-value=30 Score=37.10 Aligned_cols=58 Identities=29% Similarity=0.520 Sum_probs=0.0
Q ss_pred HHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy444 54 LAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETI 111 (495)
Q Consensus 54 laktartkdqelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdlnqkteti 111 (495)
|+...+.-..++..|+.|........+.++..+.+...++..+..+|..+..++++.+
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Eel 319 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEEL 319 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHH
Confidence 3444444445555555555555555555666666666666666666666666555443
No 114
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.55 E-value=4.7e+02 Score=21.68 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=11.0
Q ss_pred hhcchHHHHHHHHhhh
Q psy444 343 EKRKDEEIKRLKEEIG 358 (495)
Q Consensus 343 ekrkdeeikrlkeeig 358 (495)
-+|++-||.+||+-++
T Consensus 135 ~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 135 LRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4566777877777654
No 115
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.49 E-value=4.3e+02 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhHHH
Q psy444 241 ASKIKQLMSEIASKEESMKKLIKQNNEL 268 (495)
Q Consensus 241 askikqlmseiaskeesmkklikqnnel 268 (495)
..++..++.++...-...+..|++-...
T Consensus 43 ~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 43 KQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666556666666554433
No 116
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=21.00 E-value=6.1e+02 Score=23.56 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHhHHHHHhhhccccchhhhccch-hhchHHhhhhHHHHHHHH
Q psy444 258 MKKLIKQNNELVERLNSVEPRIEVLTKDI-QIKTEKLHKLAEEHEELI 304 (495)
Q Consensus 258 mkklikqnnelverlnsveprievltkdi-qikteklhklaeeheeli 304 (495)
-..+-.+-|++-+++|.+..+|.-|+-+. -+.+..|...-+..+|.+
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv 127 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETV 127 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHH
Confidence 34455566788888888888887776553 345566666655555544
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.71 E-value=3.6e+02 Score=23.26 Aligned_cols=49 Identities=35% Similarity=0.605 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhccccceeeehhhhhhc
Q psy444 82 CEQHLEKIKKEFKELQEKYQRDL---NQKTETIRSLTNKNLELKVQYEEEID 130 (495)
Q Consensus 82 ceqhlekikkefkelqekyqrdl---nqktetirsltnknlelkvqyeeeid 130 (495)
...-+..++.++++|+.+|+.-| ..|+|.+-.|-+.-..+|--|...|+
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999764 67888888888777777777766654
No 118
>PF13166 AAA_13: AAA domain
Probab=20.60 E-value=6.7e+02 Score=25.11 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=4.9
Q ss_pred ccchHHHH
Q psy444 78 KANTCEQH 85 (495)
Q Consensus 78 kantceqh 85 (495)
....|.|.
T Consensus 257 ~CpfC~q~ 264 (712)
T PF13166_consen 257 TCPFCQQE 264 (712)
T ss_pred cCCCCCCc
Confidence 34467785
No 119
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.42 E-value=4.1e+02 Score=25.18 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceeee-hhhhhhccccchhhhcccchhhhhhhhc
Q psy444 119 LELKV-QYEEEIDNRDTRIKELTSDTSEIDKIVS 151 (495)
Q Consensus 119 lelkv-qyeeeidnrdtrikeltsdtseidkivs 151 (495)
|-.+| .|+.-|-.||.-+.+-|..+.+.-+.|-
T Consensus 135 Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 135 LQRQLCEFESLICQRDAILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344 6777787777777666666666554443
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.40 E-value=73 Score=30.81 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=0.0
Q ss_pred cchhhhhhhhhcchhhhhccccccchhhhhhHHHHhhhcchhhcchhhhHHHHHhhccccccccchhHHHHHHHh
Q psy444 391 KDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTL 465 (495)
Q Consensus 391 kdkleveldklrmesaekiklrdseldkkheviaemklsmeannrriqdleeqlaennawineqdlkiqeiqrtl 465 (495)
.+.|..++..|+-...+--..-.++|+.-.+-|++.....++....+.+++.|+.+-++=|++---++++++-.+
T Consensus 181 ~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 181 KDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 121
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.33 E-value=4.1e+02 Score=28.34 Aligned_cols=44 Identities=34% Similarity=0.482 Sum_probs=32.7
Q ss_pred eehhhhhhccccchhhhcccchhhhhh---hhccchhHHhhhhhhhccccc
Q psy444 122 KVQYEEEIDNRDTRIKELTSDTSEIDK---IVSRKDAEIEKLSKENEKLSM 169 (495)
Q Consensus 122 kvqyeeeidnrdtrikeltsdtseidk---ivsrkdaeieklskeneklsm 169 (495)
.|-|++-+.||.. |+|.|...+. -|+..-..|.+|.+|.|-+-+
T Consensus 284 svpy~~a~~n~ri----l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~L 330 (518)
T PF10212_consen 284 SVPYEEALANRRI----LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWML 330 (518)
T ss_pred cCChHHHHhhhHH----HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999843 6777776654 467777888888888876543
Done!