Query psy444
Match_columns 495
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 17:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 95.8 0.02 6.7E-07 59.4 8.0 12 316-327 1119-1130(1184)
2 1i84_S Smooth muscle myosin he 95.6 0.021 7.3E-07 59.1 7.5 9 349-357 1152-1160(1184)
3 1c1g_A Tropomyosin; contractIl 91.2 4.1 0.00014 31.4 17.7 14 245-258 170-183 (284)
4 2zxx_A Geminin; coiled-coil, c 84.5 1.4 4.7E-05 35.3 5.0 50 323-376 27-76 (79)
5 3oja_A Leucine-rich immune mol 80.9 22 0.00076 32.1 12.1 74 33-106 323-396 (487)
6 2dfs_A Myosin-5A; myosin-V, in 76.7 19 0.00066 37.8 11.7 43 244-286 958-1000(1080)
7 3na7_A HP0958; flagellar bioge 75.9 11 0.00037 32.8 8.2 55 208-262 77-131 (256)
8 3oja_B Anopheles plasmodium-re 72.4 29 0.001 31.7 10.5 36 236-271 457-492 (597)
9 2wvr_A Geminin; DNA replicatio 69.2 6.1 0.00021 36.3 5.2 58 323-384 108-165 (209)
10 1wlq_A Geminin; coiled-coil; 2 66.4 9.4 0.00032 30.9 5.2 50 323-376 31-80 (83)
11 3oja_B Anopheles plasmodium-re 48.1 25 0.00086 32.1 5.5 28 309-336 561-588 (597)
12 3na7_A HP0958; flagellar bioge 41.6 1.7E+02 0.0058 25.2 11.2 32 344-378 146-182 (256)
13 3swk_A Vimentin; cytoskeleton, 40.5 42 0.0014 25.9 4.9 46 64-109 1-46 (86)
14 2dfs_A Myosin-5A; myosin-V, in 40.1 55 0.0019 34.5 7.1 6 351-356 1026-1031(1080)
15 1sjj_A Actinin; 3-helix bundle 38.2 2.8E+02 0.0095 26.7 18.5 146 232-377 515-674 (863)
16 3hnw_A Uncharacterized protein 37.4 1.3E+02 0.0044 24.9 7.7 110 128-256 13-124 (138)
17 2xus_A Breast cancer metastasi 34.0 39 0.0013 25.0 3.5 29 78-106 7-36 (49)
18 3ol1_A Vimentin; structural ge 31.2 1E+02 0.0035 24.6 5.9 45 63-107 20-64 (119)
19 3uun_A Dystrophin; triple heli 31.1 1.4E+02 0.0047 21.0 7.3 39 234-272 35-73 (119)
20 3c98_B Syntaxin-1A; protein co 30.4 2.1E+02 0.0071 22.8 7.7 57 241-301 84-140 (279)
21 3vmx_A Voltage-gated hydrogen 30.0 55 0.0019 24.3 3.8 40 292-332 5-44 (48)
22 3oja_A Leucine-rich immune mol 27.7 3.3E+02 0.011 24.4 13.6 59 247-305 365-424 (487)
23 3tnu_B Keratin, type II cytosk 27.1 1.5E+02 0.0051 23.5 6.2 105 287-402 14-123 (129)
24 1zxa_A CGMP-dependent protein 27.0 34 0.0012 26.5 2.3 39 35-73 11-49 (67)
25 3tnu_A Keratin, type I cytoske 26.8 1.3E+02 0.0046 23.9 5.9 106 286-402 15-125 (131)
26 1fio_A SSO1 protein; four heli 25.8 2.5E+02 0.0087 22.3 7.6 19 9-27 4-22 (196)
27 3uul_A Utrophin; spectrin repe 23.6 2E+02 0.0068 20.3 7.1 38 235-272 36-73 (118)
28 3r2p_A Apolipoprotein A-I; amp 23.6 1.4E+02 0.0049 24.6 5.7 50 64-113 90-140 (185)
29 1cun_A Protein (alpha spectrin 22.4 2.7E+02 0.0092 21.5 11.9 37 235-271 33-69 (213)
30 1deq_A Fibrinogen (alpha chain 20.6 5.8E+02 0.02 25.1 10.1 16 314-329 142-157 (390)
31 3aon_A V-type sodium ATPase su 20.1 1.2E+02 0.0041 26.2 4.7 53 235-287 137-193 (217)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.78 E-value=0.02 Score=59.44 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy444 316 DEMREEIKRLEE 327 (495)
Q Consensus 316 demreeikrlee 327 (495)
.++..+|..+++
T Consensus 1119 ~~Le~eie~L~e 1130 (1184)
T 1i84_S 1119 RELESHISDLQE 1130 (1184)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333433333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.58 E-value=0.021 Score=59.14 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=0.0
Q ss_pred HHHHHHHhh
Q psy444 349 EIKRLKEEI 357 (495)
Q Consensus 349 eikrlkeei 357 (495)
++..|++.|
T Consensus 1152 ele~L~~~I 1160 (1184)
T 1i84_S 1152 ELEALKTEL 1160 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444433
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.24 E-value=4.1 Score=31.36 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=5.3
Q ss_pred HHHHHHHhchHHHH
Q psy444 245 KQLMSEIASKEESM 258 (495)
Q Consensus 245 kqlmseiaskeesm 258 (495)
..+.+.++.....+
T Consensus 170 ~~l~~~~~~~~~~~ 183 (284)
T 1c1g_A 170 VIIESDLERAEERA 183 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 4
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.50 E-value=1.4 Score=35.28 Aligned_cols=50 Identities=34% Similarity=0.408 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHH
Q psy444 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376 (495)
Q Consensus 323 krleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmlee 376 (495)
+.|.++|+||+-= -..-..++++|.+|++|.-.++-+.++-..||.+|++
T Consensus 27 ~AL~eaL~EN~~L----h~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 27 KALYEALKENEKL----HKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899988632 2233457899999999999999999999999999976
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.86 E-value=22 Score=32.11 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy444 33 LLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQ 106 (495)
Q Consensus 33 llefeqelretmkqkddkllelaktartkdqelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdlnq 106 (495)
..+|+.|+.-..+-.-.-|+.|--...+...++..+++..-+-..+-...+++++++.++..+....++....|
T Consensus 323 ~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
T 3oja_A 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396 (487)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhch
Confidence 45899998888777888888888888887777766666555555566678888888888888877777765544
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.68 E-value=19 Score=37.84 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=20.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccch
Q psy444 244 IKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI 286 (495)
Q Consensus 244 ikqlmseiaskeesmkklikqnnelverlnsveprievltkdi 286 (495)
..+-++++...-+.|+++-+++..+-.++.+.+-.++.+.+.+
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555444444444444444433
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.93 E-value=11 Score=32.79 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=38.1
Q ss_pred HHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHHHHHHHH
Q psy444 208 KELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262 (495)
Q Consensus 208 kelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskeesmkkli 262 (495)
+..+++.....-|+|++.|.|+|=.-...|..--..|..+|..+...++.+..+-
T Consensus 77 ~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 77 ASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666778999999998876666666666677777777766655544443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.36 E-value=29 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=16.2
Q ss_pred HHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 236 eirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
++.+-...+.++-.++...+.++...-....+..++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333333445555555555555444444443333333
No 9
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=69.21 E-value=6.1 Score=36.33 Aligned_cols=58 Identities=33% Similarity=0.392 Sum_probs=42.8
Q ss_pred HHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHHHhccccc
Q psy444 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDV 384 (495)
Q Consensus 323 krleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmleeykqnakdv 384 (495)
+.|+++|.||+--. ..-..+++||.+||+|.-..+-|+..-.-||+||++......|-
T Consensus 108 ~AL~eaLeEN~~Lh----~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~ 165 (209)
T 2wvr_A 108 KALYEALKENEKLH----KEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDN 165 (209)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 46778888876321 11233789999999999999999999999999999998777653
No 10
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.37 E-value=9.4 Score=30.90 Aligned_cols=50 Identities=34% Similarity=0.408 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhhhhhccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHH
Q psy444 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376 (495)
Q Consensus 323 krleevlkeneceraglltkekrkdeeikrlkeeigkykmlvqerdqlanmlee 376 (495)
+.|.++|.||+-= -..-..+++||.+||++....+-|.+.-..||.|++.
T Consensus 31 ~AL~eaL~EN~~L----h~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 31 KALYEALKENEKL----HKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888742 2222346899999999999999999998999999875
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.14 E-value=25 Score=32.11 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=17.1
Q ss_pred hccccccHHHHHHHHHHHHHhhhhhhhh
Q psy444 309 NEKKLELDEMREEIKRLEEVLKENECER 336 (495)
Q Consensus 309 nekkleldemreeikrleevlkenecer 336 (495)
.+-+-+...++.+|+.|++.+.+|--.|
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~~~~~~~~ 588 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKKNRNPDTR 588 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3444567778899999999999886544
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.56 E-value=1.7e+02 Score=25.17 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=15.9
Q ss_pred hcchHHHHHHHHhhhhhhHHHHhHHHHH-----HHHHHHH
Q psy444 344 KRKDEEIKRLKEEIGKYKMLVQERDQLA-----NMLEEYK 378 (495)
Q Consensus 344 krkdeeikrlkeeigkykmlvqerdqla-----nmleeyk 378 (495)
..-|..+..+..++. .+...|+.++ ..|..|.
T Consensus 146 ~~~~~~~~e~~~e~~---~l~~~r~~l~~~i~~~lL~~Ye 182 (256)
T 3na7_A 146 SLVENEVKNIKETQQ---IIFKKKEDLVEKTEPKIYSFYE 182 (256)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHH
Confidence 334455555555543 2345666554 3455554
No 13
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.51 E-value=42 Score=25.95 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy444 64 ELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTE 109 (495)
Q Consensus 64 elrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdlnqkte 109 (495)
|+++||+|......--...+-.+..++-....+..||...++..+.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~ 46 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREE 46 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999987655544455666677777777777777776665543
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.11 E-value=55 Score=34.47 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.2
Q ss_pred HHHHHh
Q psy444 351 KRLKEE 356 (495)
Q Consensus 351 krlkee 356 (495)
..|++|
T Consensus 1026 ~~L~~e 1031 (1080)
T 2dfs_A 1026 SELKEQ 1031 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 15
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.19 E-value=2.8e+02 Score=26.65 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=71.1
Q ss_pred cCchHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHHHHHHhhhhcc
Q psy444 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK 311 (495)
Q Consensus 232 hkddeirqnaskikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeeheeliqtrrnek 311 (495)
+.-+.+..-..+.+.+.++|.+.+..+..+.....++..-..+....-...+..++...+.|...-++-.+++..|+..-
T Consensus 515 ~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L 594 (863)
T 1sjj_A 515 HTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQAL 594 (863)
T ss_dssp SSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777778888888888887766655544444443321111100001122333444444444444444555554433
Q ss_pred ccccH------HHH----HHHHHHHHHhhhhhhhhh----ccchhhhcchHHHHHHHHhhhhhhHHHHhHHHHHHHHHHH
Q psy444 312 KLELD------EMR----EEIKRLEEVLKENECERA----GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEY 377 (495)
Q Consensus 312 kleld------emr----eeikrleevlkenecera----glltkekrkdeeikrlkeeigkykmlvqerdqlanmleey 377 (495)
.-.+. .+. .....++..+.+-+..-+ |.-..-...-...+.+..++..+..-+..-..++..|.+.
T Consensus 595 ~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~~~ 674 (863)
T 1sjj_A 595 MEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEA 674 (863)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 32221 222 233444444544442221 2110001112456677778888877777766676666543
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.43 E-value=1.3e+02 Score=24.92 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=67.2
Q ss_pred hhccccchhhhcccchhhhhhhhccchhHHhhhhhh--hcccccchhcccchHHHHHHHHhhcchhHHHHHHhhhhhhhh
Q psy444 128 EIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKE--NEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVK 205 (495)
Q Consensus 128 eidnrdtrikeltsdtseidkivsrkdaeieklske--neklsmdlvfkenqevtelmkevdkkdnyietllkeneanvk 205 (495)
.|.++.-+|.. ..+...+.++.+.-|..|..++.. +..+|.+-+ .+|-.+.--|.|+ +....
T Consensus 13 ~I~Gk~Y~i~g-~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~--------aVLaALNiadEl~----k~~~~--- 76 (138)
T 3hnw_A 13 ILGGKVIKLGG-YESEEYLQRVASYINNKITEFNKEESYRRMSAELR--------TDMMYLNIADDYF----KAKKM--- 76 (138)
T ss_dssp EETTEEEEECS-CSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHH--------HHHHHHHHHHHHH----HHHHH---
T ss_pred EECCEEEEecC-CCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH--------HHHHHHHHHHHHH----HHHHH---
Confidence 57888888884 334567888889999999999866 777776532 3455554444443 33332
Q ss_pred HHHHHHHHhhhhcchhhhhhhhcccccCchHHhhhHHHHHHHHHHHhchHH
Q psy444 206 LCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEE 256 (495)
Q Consensus 206 lckelekqvhelninkeldrlnheiihkddeirqnaskikqlmseiaskee 256 (495)
+..|+.++.++ .+|+-.|.|+.+-.+-.+..--..+..+-.++..-+.
T Consensus 77 -~~~L~~~l~~~--~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 77 -ADSLSLDIENK--DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp -HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554 7888889998776555444444444444444433333
No 17
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.00 E-value=39 Score=25.04 Aligned_cols=29 Identities=31% Similarity=0.629 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q psy444 78 KANTCEQHLEKIKKEFKELQEKY-QRDLNQ 106 (495)
Q Consensus 78 kantceqhlekikkefkelqeky-qrdlnq 106 (495)
+-+.|-.+|..|.++|.+|.+++ +-.|+|
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEqlY~ERl~q 36 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKLFRERLSQ 36 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999985 444554
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.22 E-value=1e+02 Score=24.65 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy444 63 QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQK 107 (495)
Q Consensus 63 qelrdlrqqtqqsvtkantceqhlekikkefkelqekyqrdlnqk 107 (495)
.++++||+|.-....--..++-.+..++.....+..||...++..
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r 64 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 578889988755444333456667778888888888888766544
No 19
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=31.07 E-value=1.4e+02 Score=21.03 Aligned_cols=39 Identities=5% Similarity=0.201 Sum_probs=33.3
Q ss_pred chHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhh
Q psy444 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERL 272 (495)
Q Consensus 234 ddeirqnaskikqlmseiaskeesmkklikqnnelverl 272 (495)
-+.+..-..+.+.++.+|.+....+..+......|+..-
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~ 73 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTG 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 356778888999999999999999999999888888653
No 20
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=30.43 E-value=2.1e+02 Score=22.84 Aligned_cols=57 Identities=16% Similarity=0.353 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccccchhhhccchhhchHHhhhhHHHHH
Q psy444 241 ASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHE 301 (495)
Q Consensus 241 askikqlmseiaskeesmkklikqnnelverlnsveprievltkdiqikteklhklaeehe 301 (495)
...+..++.+|...-..+...++.-..+.+......+. ..+|....+....||....
T Consensus 84 ~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~----~~~i~~~~~qtn~La~n~a 140 (279)
T 3c98_B 84 KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS----SADLRIRKTQHSTLSRKFV 140 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444444444444455544443332 3344444444445554433
No 21
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.05 E-value=55 Score=24.34 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=30.6
Q ss_pred HhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhh
Q psy444 292 KLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKEN 332 (495)
Q Consensus 292 klhklaeeheeliqtrrnekkleldemreeikrleevlken 332 (495)
++|||.+-...| -+|-.+-...-+++..||.||-.+|+.+
T Consensus 5 ~l~kLKe~n~~L-~~kv~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 5 QILRLKQINIQL-ATKIQHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence 577777777666 4555665666788899999999999876
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.69 E-value=3.3e+02 Score=24.36 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHhchHHHHHHHHHHhHHHHHhhhccccchhh-hccchhhchHHhhhhHHHHHHHHH
Q psy444 247 LMSEIASKEESMKKLIKQNNELVERLNSVEPRIEV-LTKDIQIKTEKLHKLAEEHEELIQ 305 (495)
Q Consensus 247 lmseiaskeesmkklikqnnelverlnsvepriev-ltkdiqikteklhklaeeheeliq 305 (495)
+..+-..-++.+.+.-+...+.-.++....-++|+ -+.+.+-...-+++....++++.+
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444442 333334444445555555555544
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.06 E-value=1.5e+02 Score=23.52 Aligned_cols=105 Identities=26% Similarity=0.418 Sum_probs=43.9
Q ss_pred hhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhcc----chhhhcchHHHHHHHHhhhhhh-
Q psy444 287 QIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGL----LTKEKRKDEEIKRLKEEIGKYK- 361 (495)
Q Consensus 287 qikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceragl----ltkekrkdeeikrlkeeigkyk- 361 (495)
+.|.+.+...+..|.+-+++-+ -++.++|..|.+|+--+..-..-++.| -.-+.+-..+++.+...|+...
T Consensus 14 ~~K~eel~~~~~~~~~~l~~~k----~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 14 QTKYEELQQTAGRHGDDLRNTK----HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89 (129)
T ss_dssp --------------------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444322 235555555555543333222222222 1223344445555665565543
Q ss_pred HHHHhHHHHHHHHHHHHhccccceeeccccchhhhhhhhhc
Q psy444 362 MLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR 402 (495)
Q Consensus 362 mlvqerdqlanmleeykqnakdvvyyedmkdkleveldklr 402 (495)
-|.+-|..++..+.+|..- =|+|-.|++|+.-.|
T Consensus 90 eL~~~r~e~~~ql~EYq~L-------lnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 90 ALQKAKQDMARLLREYQEL-------MNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3456688888888998642 245666777765443
No 24
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.05 E-value=34 Score=26.45 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=29.0
Q ss_pred hHHHHHHHHhccchhHHHHHHHhhccccHHHHHHHHHHH
Q psy444 35 EFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQ 73 (495)
Q Consensus 35 efeqelretmkqkddkllelaktartkdqelrdlrqqtq 73 (495)
..++++.+..+.||-.+-+|..+.+.+|.+++.||.+..
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999986643
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.80 E-value=1.3e+02 Score=23.92 Aligned_cols=106 Identities=29% Similarity=0.399 Sum_probs=44.3
Q ss_pred hhhchHHhhhhHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhhhhhhhhcc----chhhhcchHHHHHHHHhhhhhh
Q psy444 286 IQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGL----LTKEKRKDEEIKRLKEEIGKYK 361 (495)
Q Consensus 286 iqikteklhklaeeheeliqtrrnekkleldemreeikrleevlkeneceragl----ltkekrkdeeikrlkeeigkyk 361 (495)
.+.|.+.+...+..|.+-+++-+ -++.++|..|.+|+--+..-...++.| -.-+.+-..+++.+...|+...
T Consensus 15 y~~K~eel~~~~~~~~~~l~~~k----~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 15 FFTKTEELNREVATNSELVQSGK----SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665554433 346666666666654433222222222 1223344455566666665543
Q ss_pred -HHHHhHHHHHHHHHHHHhccccceeeccccchhhhhhhhhc
Q psy444 362 -MLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR 402 (495)
Q Consensus 362 -mlvqerdqlanmleeykqnakdvvyyedmkdkleveldklr 402 (495)
-|.+-|..++..+.+|..- -|+|-.|++|+...|
T Consensus 91 ~eL~~~r~em~~ql~EYq~L-------l~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 91 EQLAQLRCEMEQQNQEYKIL-------LDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3456688888888898642 245666777765443
No 26
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=25.75 E-value=2.5e+02 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=9.8
Q ss_pred chhhhhcchhHHHHHHHHh
Q psy444 9 FKEWHTKISEAELLVKQIE 27 (495)
Q Consensus 9 fkewhtkiseaellvkqie 27 (495)
+.+|...+.+....+..|.
T Consensus 4 ~~~f~~~~~~i~~~i~~i~ 22 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYD 22 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666555544444443
No 27
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.65 E-value=2e+02 Score=20.35 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=32.5
Q ss_pred hHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhh
Q psy444 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERL 272 (495)
Q Consensus 235 deirqnaskikqlmseiaskeesmkklikqnnelverl 272 (495)
+.+..-..+.+.++.+|.+....+..+......|+..-
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~ 73 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQG 73 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55677778899999999999999999999888888653
No 28
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.60 E-value=1.4e+02 Score=24.57 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy444 64 ELRDLRQQTQQSVTKANTC-EQHLEKIKKEFKELQEKYQRDLNQKTETIRS 113 (495)
Q Consensus 64 elrdlrqqtqqsvtkantc-eqhlekikkefkelqekyqrdlnqktetirs 113 (495)
++.++|.+...-.....+| .+|++.++..+.-+.+.|+-.+++.++.+|+
T Consensus 90 dlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~ 140 (185)
T 3r2p_A 90 DLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQE 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555554444443333 4677777777777777777777777777764
No 29
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=22.40 E-value=2.7e+02 Score=21.45 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=29.9
Q ss_pred hHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHh
Q psy444 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271 (495)
Q Consensus 235 deirqnaskikqlmseiaskeesmkklikqnnelver 271 (495)
+.+.+-..+-+.++.+|.+....+..+......|++.
T Consensus 33 ~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~ 69 (213)
T 1cun_A 33 TGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDD 69 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4555666777889999999999999998888888775
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.63 E-value=5.8e+02 Score=25.08 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHHHHHh
Q psy444 314 ELDEMREEIKRLEEVL 329 (495)
Q Consensus 314 eldemreeikrleevl 329 (495)
-|+..+.+|+|||..+
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677889999999877
No 31
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.13 E-value=1.2e+02 Score=26.22 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=39.0
Q ss_pred hHHhhhHHHHHHHHHHHhchHHHHHHHHHHhHHHHHhhhccc----cchhhhccchh
Q psy444 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVE----PRIEVLTKDIQ 287 (495)
Q Consensus 235 deirqnaskikqlmseiaskeesmkklikqnnelverlnsve----prievltkdiq 287 (495)
|+.+.+..++..++-++|+.+.++..|...-..--.|.|..| |+++---+-|.
T Consensus 137 d~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNALE~viIP~~e~tikyI~ 193 (217)
T 3aon_A 137 DRSIDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQLEETIYYIK 193 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccchHHHHHHHH
Confidence 556777888899999999999999988766666666777665 66555444443
Done!