RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy444
(495 letters)
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 63.2 bits (154), Expect = 2e-10
Identities = 75/344 (21%), Positives = 162/344 (47%), Gaps = 13/344 (3%)
Query: 34 LEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEF 93
L+ +E ++ + +KL E K+ + + + L DL ++ ++ + + + L++
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728
Query: 94 KELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRK 153
+E E+ Q L + E + L + EL+ + EE + ++ + L EI+++ ++
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
Query: 154 DAEIEKLSKENEKLSM--DLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELE 211
A E+L + E+L + +E+ L + ++ + IE L +E E + ELE
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 212 KQVHEL-----NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNN 266
+++ EL + +EL+ L E +DE+++ + ++L E+ E + +L ++
Sbjct: 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908
Query: 267 ELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLE 326
+L ERL +E ++E L ++ E+L EE T E + E++ + EEI+ L
Sbjct: 909 KLRERLEELEAKLERLEVELPELEEEL------EEEYEDTLETELEREIERLEEEIEALG 962
Query: 327 EVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL 370
V E + + + + + L+E K +++E D+
Sbjct: 963 PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006
Score = 62.8 bits (153), Expect = 2e-10
Identities = 87/345 (25%), Positives = 179/345 (51%), Gaps = 6/345 (1%)
Query: 128 EIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVD 187
+ +KEL + +E++ + + + E++ L E L DL+ + +++ EL ++++
Sbjct: 661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLE-DLLEELRRQLEELERQLE 719
Query: 188 KKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQL 247
+ + L +E E +ELE+++ EL +EL+ L + ++E+ + +L
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELE--EELEELQERLEELEEELESLEEALAKL 777
Query: 248 MSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR 307
EI EE + L ++ EL E L E R++ L ++++ ++ +L +E EEL +
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL-EEE 836
Query: 308 RNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQE- 366
E + +LDE+ EE++ LE+ L+E + E L +++ ++E+K L+EE + + ++E
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896
Query: 367 RDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL-RMESAEKIKLRDSELDKKHEVIAE 425
+LA + EE ++ + + E ++LEVEL +L E ++EL+++ E + E
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE 956
Query: 426 MKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIE 470
++ N R + E++ E + Q ++E + LLE IE
Sbjct: 957 EIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIE 1001
Score = 52.0 bits (125), Expect = 5e-07
Identities = 78/360 (21%), Positives = 176/360 (48%), Gaps = 21/360 (5%)
Query: 126 EEEIDNRDTRIKELTSDTSEIDKIVS--RKDAEI----EKLSKENEKLSMDLVFKENQEV 179
E +++ + ++ L E++K + + AE ++L E +L + L+ + +E+
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237
Query: 180 TELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQ 239
+ ++E++++ + +E L+E + ++ E EK++ EL EL+ L E+ +E+ +
Sbjct: 238 RKELEELEEELSRLEEELEELQEELE---EAEKEIEELK--SELEELREELEELQEELLE 292
Query: 240 NASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEE 299
+I++L EI+ E +++L + EL ERL ++ +IE L ++++ + L +L +
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352
Query: 300 HEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGK 359
EL + + E + +L + EE++ L E L+E E L + + + EE+KR E
Sbjct: 353 LAEL-EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES--- 408
Query: 360 YKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKK 419
L + ++L+ LE+ K+ K++ + EL++ E E+++ L +
Sbjct: 409 ---LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465
Query: 420 HEVIAEMKLSMEANNRRIQDLEEQLAE---NNAWINEQDLKIQEIQRTLLEPIEPLSELV 476
+AE++ ++ + + LE +L ++ ++ L P++EL+
Sbjct: 466 ERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELI 525
Score = 51.3 bits (123), Expect = 1e-06
Identities = 64/308 (20%), Positives = 142/308 (46%), Gaps = 6/308 (1%)
Query: 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQ 74
++ E + + +E + QL +EL E +++ +++L EL + ++EL L + +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDT 134
+ E+ + +++E +EL+E+ + ++ + + + + + E+EI+ +
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEEL-EEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 135 RIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
I+EL E+++ + + E+E+L +E E+L + + E+ EL +E ++ + +
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKE-ELEDELKELEEEKEELEEELR 894
Query: 195 TLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK 254
L E + ++L +++ EL E + + ++ E + +L EI
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954
Query: 255 EESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
EE ++ L N +E VE R E L E L + E+ E+I+ EK+
Sbjct: 955 EEEIEALGPVNLRAIEEYEEVEERYEELKSQR----EDLEEAKEKLLEVIEELDKEKRER 1010
Query: 315 LDEMREEI 322
E ++I
Sbjct: 1011 FKETFDKI 1018
Score = 50.1 bits (120), Expect = 2e-06
Identities = 61/286 (21%), Positives = 129/286 (45%), Gaps = 19/286 (6%)
Query: 62 DQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLEL 121
++EL L ++ ++ + E+ +E++K E +EL+E+ + ++ + E
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE--------LQEELLELKEE 296
Query: 122 KVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTE 181
+ E EI R++EL ++ E+++ + +IE L +E E+ L+ + Q + E
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE-TLLEELEQLLAE 355
Query: 182 LMKEVDKKDNYIETLLKENEANVKLCKELEKQV--HELNINKELDRLNHEIIHKDDEIRQ 239
L + ++ + + LL+E E + +E ++ I EL+ L EI ++ + +
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415
Query: 240 NASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEE 299
+ +++ L E+ E +++L + EL E L +E ++E L + K E
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL--------KELER 467
Query: 300 HEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKR 345
+Q + EL + + RLE + ++ RA L E
Sbjct: 468 ELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513
Score = 49.3 bits (118), Expect = 4e-06
Identities = 61/279 (21%), Positives = 139/279 (49%), Gaps = 6/279 (2%)
Query: 218 NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP 277
+ +EL L ++ ++E++ ++++ L + +++L +Q EL L ++E
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337
+E L ++ E+L +L EE EEL Q R E + EL+ + E + +L+E ++E E +R
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEEL-QERLEELEEELESLEEALAKLKEEIEELEEKRQ 789
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKM-LVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEV 396
L + + +EE++ + + + L + + +E ++ +++ E+ D+LE
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849
Query: 397 ELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456
EL++L ++++ EL++ E++ ++ ++LEE+L E + + E
Sbjct: 850 ELEELE----KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
Query: 457 KIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLTPE 495
+I++++ L E L L ++ + + L+ T E
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE 944
Score = 47.0 bits (112), Expect = 2e-05
Identities = 57/249 (22%), Positives = 127/249 (51%), Gaps = 6/249 (2%)
Query: 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRI 279
+ E+ ++E+ + +++++L E+ S + ++ L EL +L +E ++
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 280 EVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGL 339
E L +++ E+L +L EEL + E + EL+E++E ++ LEE L+ E A L
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEE-ELEELEEELEELQERLEELEEELESLEEALAKL 777
Query: 340 LTKEKRKDEEIKRLKEEIGKYKMLVQE-RDQLANMLEEYKQNAKDVVYYEDMKDKLEVEL 398
+ + +E+ + L+EE+ + + ++E +L + E + + E ++LE E+
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837
Query: 399 DKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKI 458
++L EK+ + EL++ + + E+K +E ++LE++L E E + ++
Sbjct: 838 EEL----EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 459 QEIQRTLLE 467
+E++ L E
Sbjct: 894 RELESELAE 902
Score = 41.6 bits (98), Expect = 0.001
Identities = 46/226 (20%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL------IQTRRNEKKLELD 316
++ EL E L +E ++E L ++++ +L L + EEL ++ + E K EL
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376
+ EE+++L+ L+E E E L + + E ++ L+EE+ + + +L +EE
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE---EALAKLKEEIEE 783
Query: 377 YKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRR 436
++ + + + ++ E ++ +++ + ++ + I E++ +E +
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
Query: 437 IQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNI 482
+ +LEE+L E + E +++E++ E + L EL ++ +
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889
Score = 38.9 bits (91), Expect = 0.006
Identities = 58/263 (22%), Positives = 121/263 (46%), Gaps = 18/263 (6%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEE----SMKKLIKQNNELVERLNSVE 276
++L+R + +D + + ++++L + E + + L+ +L +
Sbjct: 179 RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELR 238
Query: 277 PRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECER 336
+E L +++ E+L +L EE EE + E K EL+E+REE++ L+E L E + E
Sbjct: 239 KELEELEEELSRLEEELEELQEELEE-AEKEIEELKSELEELREELEELQEELLELKEEI 297
Query: 337 AGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEV 396
L + E ++ L+ E+ + L + ++L +E K+ ++ + ++L
Sbjct: 298 EELEGEISLLRERLEELENEL---EELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 397 ELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456
EL++ + E EK+ EL++ E + E + +LE +LAE + E
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALRE----------ELAELEAELAEIRNELEELKR 404
Query: 457 KIQEIQRTLLEPIEPLSELVMKR 479
+I+ ++ L E L +L +
Sbjct: 405 EIESLEERLERLSERLEDLKEEL 427
Score = 35.8 bits (83), Expect = 0.060
Identities = 39/181 (21%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 14 TKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQ 73
++ E E +++++ + +L ++EL + +K+ +++ EL + R + EL +L+++ +
Sbjct: 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908
Query: 74 QSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQY-------- 125
+ + E LE+++ E EL+E+ + + ET + LE +++
Sbjct: 909 KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRA 968
Query: 126 EEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKE 185
EE + + R +EL S ++++ + IE+L KE + + K N+ +E+ KE
Sbjct: 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKE 1028
Query: 186 V 186
+
Sbjct: 1029 L 1029
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 60.8 bits (148), Expect = 9e-10
Identities = 72/317 (22%), Positives = 151/317 (47%), Gaps = 11/317 (3%)
Query: 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQ 74
+I E E ++++E K +L + ELR+ +++ +++L +L K +++ LR+ +
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDT 134
+ E+ + ++ KE EL+ + E + + E + E EI+ +
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEA--------EIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 135 RIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
+I++L + + + + AE+ L++E L L E + + + ++ + IE
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR-IAATERRLEDLEEQIE 848
Query: 195 TLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK 254
L ++ E+ +ELE+ + EL EL+ L +E ++ + S++++L E+
Sbjct: 849 ELSEDIESLAAEIEELEELIEEL--ESELEALLNERASLEEALALLRSELEELSEELREL 906
Query: 255 EESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
E +L ++ EL E+L +E R+E L I E+L + E + N+ + +
Sbjct: 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDD 966
Query: 315 LDEMREEIKRLEEVLKE 331
+E R +KRLE +KE
Sbjct: 967 EEEARRRLKRLENKIKE 983
Score = 55.1 bits (133), Expect = 7e-08
Identities = 59/285 (20%), Positives = 125/285 (43%), Gaps = 16/285 (5%)
Query: 198 KENEANVKLCKELEKQVHELNIN-----KELDRLNHEIIHKDDEIRQNASKIKQLMSEIA 252
+E E + +ELE+++ EL KEL+ L E+ E+ + + +I L ++A
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
Query: 253 SKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKK 312
E +++L ++ +L + L +E IE L + ++ E+L + E EEL + + + K
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-EAQIEQLK 795
Query: 313 LELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLAN 372
EL +RE + L L +R + +R+ + + L ++ ++L+
Sbjct: 796 EELKALREALDELRAELTL---LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
Query: 373 MLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEA 432
+E +++ + + L R E + L SEL++ E + E+
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL------ 906
Query: 433 NNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVM 477
+ +L +L E + + +L+++ ++ + E LSE
Sbjct: 907 -ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
Score = 54.3 bits (131), Expect = 1e-07
Identities = 70/323 (21%), Positives = 157/323 (48%), Gaps = 20/323 (6%)
Query: 134 TRIKELTSDTSEIDKIVS--RKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDN 191
R KEL ++ E++ + R + E+L + E+L + +E+ EL E+ + +
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEELQEELK-----EAEEELEELTAELQELEE 267
Query: 192 YIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEI 251
+E L E ELE+++ E + KEL L +EI + + + ++ L ++
Sbjct: 268 KLEELRLEVS-------ELEEEIEE--LQKELYALANEISRLEQQKQILRERLANLERQL 318
Query: 252 ASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK 311
E +++L + +EL E L +E ++E L ++++ +L +L E EEL ++R E
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-ESRLEEL 377
Query: 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGK--YKMLVQERDQ 369
+ +L+ +R ++ +LE + E L + +R ++ +RL++EI + K+ E +
Sbjct: 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
Query: 370 LANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLS 429
L LEE ++ +++ + ++ EL + E+ + + + EL + + ++
Sbjct: 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-R 496
Query: 430 MEANNRRIQDLEEQLAENNAWIN 452
++ N + + L +N + ++
Sbjct: 497 LQENLEGFSEGVKALLKNQSGLS 519
Score = 48.1 bits (115), Expect = 1e-05
Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 12/284 (4%)
Query: 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPR 278
I + N I+ + EI + KI++L +IA E+++ +L K+ EL E L +
Sbjct: 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
Query: 279 IEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAG 338
+E L++ I + L +L E E+L + K EL E+ EI+ LEE L+E E E A
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSK-ELTELEAEIEELEERLEEAEEELAE 779
Query: 339 LLTKEKRKDEEIKRLKEEIGKYK--------MLVQERDQLANMLEEYKQNAKDVVYYEDM 390
+ + + +I++LKEE+ + L ++ AN+ E + + + E
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
Query: 391 KDKLEVELDKLRMESAEKIKLRDS---ELDKKHEVIAEMKLSMEANNRRIQDLEEQLAEN 447
+ LE ++++L + + +++ + + + + L +L E
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
Query: 448 NAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILG 491
+ + E + K E++R L E E L++L ++ + +D +
Sbjct: 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
Score = 45.4 bits (108), Expect = 6e-05
Identities = 68/326 (20%), Positives = 155/326 (47%), Gaps = 39/326 (11%)
Query: 38 QELRETMKQKD-----DKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKE 92
+EL+ +++ + +L EL + +EL++ ++ ++ + E+ LE+++ E
Sbjct: 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
Query: 93 FKELQEK---YQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKI 149
EL+E+ Q++L I L + K E + N + +++EL + +++++
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEA---QLEEL 328
Query: 150 VSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKE 209
S+ D E+L++ EKL EL +E +E+L E E +E
Sbjct: 329 ESKLDELAEELAELEEKL------------EELKEE-------LESLEAELEELEAELEE 369
Query: 210 LEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELV 269
LE ++ EL ++L+ L ++ + +I ++I++L + + E+ ++L ++ EL+
Sbjct: 370 LESRLEEL--EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
Query: 270 ERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVL 329
++L E ++ L +++ E+L +L EE E L + ++ EL+E + + E L
Sbjct: 428 KKL--EEAELKELQAELEELEEELEELQEELERLEEALEELRE-ELEEAEQALDAAEREL 484
Query: 330 KENECERAGLLTKEKRKDEEIKRLKE 355
+ + L ++ + + +K
Sbjct: 485 AQLQARLDSLERLQENLEGFSEGVKA 510
Score = 41.2 bits (97), Expect = 0.001
Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 11/212 (5%)
Query: 257 SMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELD 316
+++L ++ EL E L E +E LT ++Q EKL +L E EL + E + EL
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELY 291
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376
+ EI RLE+ + A L + + + +++ L+ ++ + + E ++ L+E
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
Query: 377 YKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRR 436
E ++ +LE EL+ E +++ + +L+ +A+++L + + N
Sbjct: 352 E---------LESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
Query: 437 IQDLEEQLAENNAWINEQDLKIQEIQRTLLEP 468
I+ LE +L +I+E+ + L E
Sbjct: 402 IERLEARLERLEDRRERLQQEIEELLKKLEEA 433
Score = 40.8 bits (96), Expect = 0.002
Identities = 59/293 (20%), Positives = 127/293 (43%), Gaps = 23/293 (7%)
Query: 6 NLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQEL 65
+ KE ++ E ++++E K +L EL E +++ +L LA +Q+
Sbjct: 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
Query: 66 RDLRQQTQQSVTKA-------NTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKN 118
+ LR++ + E L+++ +E EL+EK + + L
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Query: 119 LELKV------QYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMD-- 170
EL+ + EE+++ +++ +L + ++ + R +A +E+L E+L +
Sbjct: 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
Query: 171 --LVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNH 228
L E E+ EL E+++ + +E L +E E + +EL +++ E + LD
Sbjct: 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE--AEQALDAAER 482
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEV 281
E+ +++ +++L + E +K L+K + L L + I V
Sbjct: 483 EL----AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
Score = 33.5 bits (77), Expect = 0.30
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 41/163 (25%)
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364
+ RR E + +L+ RE + RLE++L E E + L ++ K E K LK E+
Sbjct: 171 KERRKETERKLERTRENLDRLEDILNELE-RQLKSLERQAEKAERYKELKAEL------- 222
Query: 365 QERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIA 424
+LE+ L LR+E + EL++ E +
Sbjct: 223 ---------------------------RELELALLVLRLEELRE------ELEELQEELK 249
Query: 425 EMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
E + +E +Q+LEE+L E ++E + +I+E+Q+ L
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Score = 33.1 bits (76), Expect = 0.39
Identities = 30/124 (24%), Positives = 58/124 (46%)
Query: 16 ISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQS 75
I E E L++++E + LL L E + +L EL++ R + + +LR++ ++
Sbjct: 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
Query: 76 VTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTR 135
K E LE ++ LQE+ + + E +L NK + + + + + +
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Query: 136 IKEL 139
IKEL
Sbjct: 981 IKEL 984
Score = 32.0 bits (73), Expect = 1.0
Identities = 33/158 (20%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 14 TKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQ 73
+++EAE ++++E + QL E + LRE + + +L L + A + L L ++
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
Query: 74 QSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRD 133
+ + E+ +E++ ++ + L +L + E + S L + EE +
Sbjct: 835 ATERRLEDLEEQIEELSEDIESL-AAEIEELEELIEELESELEALLNERASLEEALALLR 893
Query: 134 TRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDL 171
+ ++EL+ + E++ S E+E+L ++ +L + L
Sbjct: 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 53.9 bits (130), Expect = 2e-07
Identities = 72/340 (21%), Positives = 150/340 (44%), Gaps = 42/340 (12%)
Query: 127 EEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEV 186
E+ + R+ EL+ + S+ + + + EIE+L +E EKL + + EL +++
Sbjct: 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL--------KERLEELEEDL 746
Query: 187 DKKDNYIETLLKENEANVKLCKELEKQVHEL-----------------NINKELDRLNHE 229
+ IE + E + +ELE+ +H+L I EL +L E
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806
Query: 230 IIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK 289
+ + +R+ K+ +L E E+ +++L +Q +L E++ S+E IE L +
Sbjct: 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
Query: 290 TEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEE 349
E+L +L +L L ++++E LE L+E E + L + ++K +
Sbjct: 867 EEELEELEAALRDLES--------RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
Query: 350 IKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR------M 403
+ LK ++ + + E + EE + + + ++E E+ L +
Sbjct: 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAI 978
Query: 404 ESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQ 443
+ E++ R EL +K + E + ++ RI++ E++
Sbjct: 979 QEYEEVLKRLDELKEKRAKLEEERKAIL---ERIEEYEKK 1015
Score = 53.1 bits (128), Expect = 2e-07
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 21/285 (7%)
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRI-KELTSD 142
Q LE++++E +E E+YQ L +K E K E + +E I+ + + +EL
Sbjct: 198 QQLERLRRE-REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA 202
T EI ++ R + + L + N+K+ DL +E V E + E++ + +E + E E
Sbjct: 257 TEEISELEKRLEEIEQLLEELNKKI-KDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
Query: 203 NVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
++ +E ++ E+D+L EI + EI + + +L E A +E +
Sbjct: 316 ELEDAEERLAKLEA-----EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL---- 366
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN------EKKLELD 316
+L L V+ +++ EKL KL E EL + EL
Sbjct: 367 ---EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYK 361
++ I +E + E E E+ + K+++ ++++L ++ KY+
Sbjct: 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
Score = 50.8 bits (122), Expect = 1e-06
Identities = 78/345 (22%), Positives = 151/345 (43%), Gaps = 39/345 (11%)
Query: 124 QYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVF---KENQEVT 180
+++ + + ++E+ + +D I+ K ++E+L +E EK K E
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY 226
Query: 181 ELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELN-----INKELDRLNHEIIHKDD 235
EL+KE + + E + ++ + + ++L +++ EL I + L+ LN +I +
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
Query: 236 E--------IRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
E I + ++I L IA KE ++ ++ +L ++ + IE L ++I+
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 288 IKTEKLHKLAEEHEELIQTRR------NEKKLELDEMREEIKRLEEVLKENECERAGLLT 341
+ ++ KL EE+ EL + E E E R+E+K E L++ + E L
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
Query: 342 KEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL 401
+ R EE++RL EE+ + + N LEE K ED +++ + KL
Sbjct: 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK---------EDKALEIKKQEWKL 457
Query: 402 RMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAE 446
+A+ K D K E + + + L+ +LAE
Sbjct: 458 EQLAADLSKYEQELYDLKEE--------YDRVEKELSKLQRELAE 494
Score = 48.9 bits (117), Expect = 5e-06
Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 42/351 (11%)
Query: 39 ELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQE 98
EL + + K+ E+ K +QE L+++ ++ ++ EQ +E +K E KEL+
Sbjct: 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
Query: 99 KYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIE 158
+ + E + L +L+ + RI E+ ++ S++++ VSR +A +
Sbjct: 766 ----RIEELEEDLHKLEEALNDLEARLSHS------RIPEIQAELSKLEEEVSRIEARLR 815
Query: 159 KLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELN 218
++ ++ +L+++ + E +E+ EL ++ I K +EK++ LN
Sbjct: 816 EIEQKLNRLTLEKEYLE-KEIQELQEQRIDLKEQI--------------KSIEKEIENLN 860
Query: 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPR 278
KE L E+ + +R S++ L E E +++L ++ EL ++ R
Sbjct: 861 GKKE--ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
Query: 279 IEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK-----KLELDEMREEIKRLEEVLKENE 333
+ L ++ E+L ++ + E + E + EL + EEI+ LE V
Sbjct: 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPV----- 973
Query: 334 CERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDV 384
+ + +E +KRL E K L +ER + +EEY++ ++V
Sbjct: 974 -----NMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
Score = 48.1 bits (115), Expect = 9e-06
Identities = 79/379 (20%), Positives = 173/379 (45%), Gaps = 34/379 (8%)
Query: 36 FEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKE 95
F + +++ ++L L + + ELR + + + + + + + +I+KE ++
Sbjct: 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
Query: 96 LQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDA 155
L+++ + K E + EE++ + + I+ + S+ E++ + +
Sbjct: 728 LEQEEE---------------KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
Query: 156 EIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVH 215
++ KL + L L E+ + +++++ + IE L+E E + LEK+
Sbjct: 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN-RLTLEKEYL 831
Query: 216 ELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSV 275
E KE+ L + I ++I+ +I+ L + EE +++L +L RL +
Sbjct: 832 E----KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
Query: 276 EPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
+ + L ++ K+ +L + E+ + R +E K +L+ + EE+ +E+ E+E
Sbjct: 888 KKERDELEAQLRELERKIEELEAQIEKKRK-RLSELKAKLEALEEELSEIEDPKGEDEEI 946
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANML--EEYKQNAKDVVYYEDMKDK 393
L+ E + E++R++EEI + NML +EY++ K + ++ + K
Sbjct: 947 PEEELSLEDVQ-AELQRVEEEI--------RALEPVNMLAIQEYEEVLKRLDELKEKRAK 997
Query: 394 LEVELD--KLRMESAEKIK 410
LE E R+E EK K
Sbjct: 998 LEEERKAILERIEEYEKKK 1016
Score = 47.4 bits (113), Expect = 1e-05
Identities = 70/317 (22%), Positives = 150/317 (47%), Gaps = 20/317 (6%)
Query: 26 IEYKNNQL--LEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCE 83
I+ K QL L E+E E + + E K E L +Q + + + E
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLK--EKEALERQKEAIERQLASLE 250
Query: 84 QHLEKIKKEFKELQEKY---QRDLNQKTETIRSLT-NKNLELKVQYEE---EIDNRDTRI 136
+ LEK+ +E EL+++ ++ L + + I+ L + L +K + E EI + + I
Sbjct: 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310
Query: 137 KELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDL------VFKENQEVTELMKEVDKKD 190
E + + ++ +++ +AEI+KL E E+L ++ K +E EL +E++
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
Query: 191 NYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSE 250
+E + KE K+ +++ +L +E++ L E+ +E+++ + ++ L +
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLK--REINELKRELDRLQEELQRLSEELADLNAA 428
Query: 251 IASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNE 310
IA E + +L ++ + + E ++E L D+ ++L+ L EE++ ++ ++
Sbjct: 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR-VEKELSK 487
Query: 311 KKLELDEMREEIKRLEE 327
+ EL E + + EE
Sbjct: 488 LQRELAEAEAQARASEE 504
Score = 44.7 bits (106), Expect = 1e-04
Identities = 69/323 (21%), Positives = 143/323 (44%), Gaps = 20/323 (6%)
Query: 175 ENQEVTELMKEVDKKDNYIETLLKENEANV-KLCKELEKQVHELNINKELDRLNHEIIHK 233
+ ++ E ++EV++ ++ ++ E + +L +E EK + KE + K
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230
Query: 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKL 293
E + + + ++AS EE ++KL ++ +EL +RL +E +E L K I+ E+
Sbjct: 231 --EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Query: 294 H-----KLAEEHEELIQTRRN--EKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRK 346
K+ E E+ R+ EK+ EL++ E + +LE + + E L + + +
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Query: 347 DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESA 406
+ +L EE Y L +E + L LEE + + D +L+KL+ E
Sbjct: 349 RKRRDKLTEE---YAELKEELEDLRAELEEVDKEFAETR---DELKDYREKLEKLKREIN 402
Query: 407 EKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLL 466
E + D ++ + E+ N I +E ++ E ++ L+I++ + L
Sbjct: 403 ELKRELDRLQEELQRLSEEL----ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
Query: 467 EPIEPLSELVMKRRNIFQTLDLI 489
+ LS+ + ++ + D +
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRV 481
Score = 41.2 bits (97), Expect = 0.001
Identities = 48/268 (17%), Positives = 116/268 (43%), Gaps = 19/268 (7%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
+ L R + + I ++ Q +S+ + ++ K+ +L + ++ R+E
Sbjct: 684 EGLKRELSSLQSELRRIENRLDELSQELSD---ASRKIGEIEKEIEQLEQEEEKLKERLE 740
Query: 281 VLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
L +D+ +++ + E +EL R E + +L ++ E + LE L R +
Sbjct: 741 ELEEDLSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEALNDLEARLSH---SRIPEI 796
Query: 341 TKEKRK-DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKD-VVYYEDMKDKLEVEL 398
E K +EE+ R++ + + + + LE+ Q ++ + ++ +E E+
Sbjct: 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
Query: 399 DKLRM------ESAEKIKLRDSELDKKHEVIA----EMKLSMEANNRRIQDLEEQLAENN 448
+ L E E+++ +L+ + + E++ + R+I++LE Q+ +
Sbjct: 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
Query: 449 AWINEQDLKIQEIQRTLLEPIEPLSELV 476
++E K++ ++ L E +P E
Sbjct: 917 KRLSELKAKLEALEEELSEIEDPKGEDE 944
Score = 38.1 bits (89), Expect = 0.011
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 291 EKLHKLAEEHEEL------IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEK 344
+L +L E E L +Q+ + LDE+ +E+ + E E E L +E+
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
Query: 345 RKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL-RM 403
+ E ++ L+E++ + ++ N+ E K+ + E+ KLE L+ L
Sbjct: 734 KLKERLEELEEDLSSLE------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
Query: 404 ESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQD-------LEEQLAENNAWINEQDL 456
S +I +EL K E ++ ++ + +++ LE+++ E +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
Query: 457 KIQEIQRTL 465
+I+ I++ +
Sbjct: 848 QIKSIEKEI 856
Score = 37.7 bits (88), Expect = 0.015
Identities = 52/287 (18%), Positives = 126/287 (43%), Gaps = 11/287 (3%)
Query: 18 EAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAK-TARTKDQELRDLRQQTQQSV 76
E L + + ++ + EL+E + ++ +L K D E R + +
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797
Query: 77 TKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRI 136
+ + E+ + +I+ +E+++K R L + E + + E ++ +E+I + + I
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
Query: 137 KELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETL 196
+ L E+++ + +A + L L KE E+ ++E+++K +E
Sbjct: 857 ENLNGKKEELEEELEELEAALRDLESRLGDLK-----KERDELEAQLRELERKIEELEAQ 911
Query: 197 LKENEANVKLCKE-LEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKE 255
+++ + K LE EL+ ++ + EI ++ + ++++++ EI + E
Sbjct: 912 IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971
Query: 256 ESMKKLIKQNNELVERLNSVEPRIEVLT---KDIQIKTEKLHKLAEE 299
I++ E+++RL+ ++ + L K I + E+ K E
Sbjct: 972 PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Score = 35.8 bits (83), Expect = 0.052
Identities = 50/274 (18%), Positives = 113/274 (41%), Gaps = 8/274 (2%)
Query: 18 EAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVT 77
E E L ++I +L E EQ L E K+ D E + K + +L +
Sbjct: 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK---IGELEAEIASLER 308
Query: 78 KANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIK 137
E+ LE ++ +L+ + + L + E R + + + + EE ++
Sbjct: 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELE 367
Query: 138 ELTSDTSEIDKIVSRKDAEIEKLSKENEKLS--MDLVFKENQEVTELMKEVDKKDNYIET 195
+L ++ E+DK + E++ ++ EKL ++ + +E + E ++ + ++ +
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
Query: 196 LLKENEANVKLCKE--LEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIAS 253
+ EA + +E +K + +L++L ++ + E+ + ++ E++
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
Query: 254 KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
+ + + Q ER+ EVL IQ
Sbjct: 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
Score = 29.3 bits (66), Expect = 6.4
Identities = 41/211 (19%), Positives = 87/211 (41%), Gaps = 4/211 (1%)
Query: 10 KEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLR 69
++ E E + ++ + L + QEL+E +++ + K + + +L
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
Query: 70 QQTQQSVTKANTCEQHLEKIKKEFKELQEKY---QRDLNQKTETIRSLTNKNLELKVQYE 126
++ ++ E L +KKE EL+ + +R + + I + ELK + E
Sbjct: 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
Query: 127 EEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLV-FKENQEVTELMKE 185
+ D ++ +S +D + E E E +++ V QE E++K
Sbjct: 928 ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
Query: 186 VDKKDNYIETLLKENEANVKLCKELEKQVHE 216
+D+ L +E +A ++ +E EK+ E
Sbjct: 988 LDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 47.7 bits (114), Expect = 1e-05
Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 48/286 (16%)
Query: 181 ELMKEV------DKKDNYIETLLKENEANVKLCKELEKQVHELN-------INKELDRLN 227
E MK+V + D + L +++ +E EK + EL L L
Sbjct: 4 EKMKKVSIIGLKSELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLL 63
Query: 228 HEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
E++ ++ ++ L E+ E +K L + + + VE L
Sbjct: 64 SEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKL----- 118
Query: 288 IKTEKLHKLAEEHEELIQTRRNEKKLE-LDEMREEIKRLEEVLKENECERAGLLTKEKRK 346
E+L +L EE E+L + L LD ++ L+ +L L + K
Sbjct: 119 --EERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLL-------VRLGLVRREK 169
Query: 347 DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESA 406
E + + E D++A E + + VV + + L+ L
Sbjct: 170 LEALVGVIE------------DEVALYGENVEASVVIVVAHG--AEDLDKVSKILNELGF 215
Query: 407 EKIKL------RDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAE 446
E ++ + + EVIAE++ +E+ ++ L E++AE
Sbjct: 216 ELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAE 261
Score = 40.0 bits (94), Expect = 0.002
Identities = 52/286 (18%), Positives = 112/286 (39%), Gaps = 38/286 (13%)
Query: 90 KKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKI 149
K + Q L++ + +RS+ EE++ + +K L +K
Sbjct: 49 LKVAEVAQISLSSLLSEVLDYLRSVKGL-EGRLFILPEEVEKLEAELKSLEEVIKPAEKF 107
Query: 150 VSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKE 209
+E+E+L+++ E+ ++EL +E++ ++ +E L E A +
Sbjct: 108 ----SSEVEELTRKLEE-----------RLSELDEELEDLEDLLEEL--EPLAYLDFDLS 150
Query: 210 LEKQVHELNINKELDRLN--HEIIHKDDEIRQNASKIKQLMSE--IASKEESMKKLIKQN 265
L + + L + L R ++ ++ + + +A E + K+ K
Sbjct: 151 LLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKIL 210
Query: 266 NELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRL 325
NEL L V ++ I E + ++ +E E L +++ EE+ +
Sbjct: 211 NELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELE----ALAEKIAEELLAV 266
Query: 326 EEVLKENECERAGLLTKEKRKD-----------EEIKRLKEEIGKY 360
E+L E E +L+K R + +E+++LK+ I +
Sbjct: 267 REIL-EIEKALGDVLSKLARTEYTLAIEGWVPADEVEKLKKIINRA 311
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 46.4 bits (110), Expect = 3e-05
Identities = 76/380 (20%), Positives = 158/380 (41%), Gaps = 49/380 (12%)
Query: 50 KLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQR---DLNQ 106
+ L ++ AR + + +++ + K + L+ E +L+ R +L Q
Sbjct: 29 RRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQ 88
Query: 107 KTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEK 166
K+ + N+ +Q +E I D + + D ++ + + +++N
Sbjct: 89 KSTSSDDDHNR---ASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNIL 145
Query: 167 LSMDLVFKENQEVTELMKEVD---KKDNYIETLLKENEANVKLCKE-----------LEK 212
L + +++ +++ E + K N +E L E +A +KL + LEK
Sbjct: 146 LLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEK 205
Query: 213 QVHELNINKELDRLNHEIIHKDDE--------IRQNASKIKQLMSEIASKEESMKKLIKQ 264
+EL I + L + K+ + ++ + +K + E+A EE + KL K+
Sbjct: 206 LRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKE 265
Query: 265 NNELVERLNSVEPRIEVLTKDI-QIKTEKLHKLAEEHEEL-----IQTRRNEKKLEL--- 315
+ L L +E + V +D+ ++ + E+ E L T + EK +
Sbjct: 266 RSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQ 325
Query: 316 -DEMREEIKRLEEVLKENE-----CERAGLLTKE-KRKDEEIKRLKEEIGKYKMLVQE-- 366
++R+++ +LE LKE + LL ++ K +E ++ EI Y L QE
Sbjct: 326 NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESI 385
Query: 367 ---RDQLANMLEEYKQNAKD 383
+D L+ + EE K+ + +
Sbjct: 386 KEFQDTLSKLKEESKKRSLE 405
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 45.9 bits (109), Expect = 4e-05
Identities = 99/470 (21%), Positives = 213/470 (45%), Gaps = 27/470 (5%)
Query: 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRE--TMKQKDDKLLELAKTARTKDQEL 65
K ++ E E L++++E K +L E E+E+ E + LLE + K + L
Sbjct: 268 ALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327
Query: 66 RDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQY 125
+ ++ ++ + K + + L + K E +L E+ ++L ++ E + K LE Q
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387
Query: 126 EEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKE 185
EE I + EL ++ +++I + ++L + +L +E +E + ++E
Sbjct: 388 EEAIQELKEELAEL---SAALEEIQEELEELEKELEELEREL------EELEEEIKKLEE 438
Query: 186 VDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIK 245
+ E ++ E + C +++ E + + L+ E+ ++E+ +
Sbjct: 439 QINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSRE----- 493
Query: 246 QLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELI- 304
E A E +++L K+ EL E L + E L ++++ K EKL L EE EEL
Sbjct: 494 ---KEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKEN--ECERAGLLTKEKRKDEEIKRLKEEIGKYKM 362
+ + + K EL ++ + ++ L+E+L+E R L + + + +E+K+ +E+ +
Sbjct: 551 KLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLS 610
Query: 363 LVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEV 422
++E Q + E + + E +KL ++ + + A +L + + + E+
Sbjct: 611 QLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEI 670
Query: 423 -----IAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
E + +E ++ LEE+L + + E K+ EI++ + E
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEE 720
Score = 39.0 bits (91), Expect = 0.007
Identities = 83/436 (19%), Positives = 196/436 (44%), Gaps = 12/436 (2%)
Query: 40 LRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEK 99
++E + ++ +L++ + L L ++ ++ E+ E+ ++ E E+
Sbjct: 180 IKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEE 239
Query: 100 YQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEK 159
+L ++ E + L + LE++ E + R+ ++EL E+++ + R + +
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299
Query: 160 LSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELN- 218
+ + E+L +E+ EL++++ + +E L ++ E +EL ++ +EL
Sbjct: 300 IEELEEELEGLR--ALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357
Query: 219 -INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP 277
+ + L L + + E+ + ++KQL I +E + +L E+ E L +E
Sbjct: 358 LLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEM------REEIKRLEEVLKE 331
+E L ++++ E++ KL E+ +L +L +E + E+ L E
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLE 477
Query: 332 NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMK 391
L +E +++E L+EEI + + ++E ++ L E ++ K+ + E+
Sbjct: 478 LYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEEL--EEKL 535
Query: 392 DKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWI 451
+KLE L++L + + E ++ E + + R ++ +E+L E +
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL 595
Query: 452 NEQDLKIQEIQRTLLE 467
E K++E++ L +
Sbjct: 596 KELKKKLKELEERLSQ 611
Score = 38.6 bits (90), Expect = 0.007
Identities = 60/294 (20%), Positives = 125/294 (42%), Gaps = 6/294 (2%)
Query: 86 LEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSE 145
EK+ + KE+ ++ + + + + L +L EEE+ +++E+ + E
Sbjct: 169 YEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELK-KLEEIQEEQEE 227
Query: 146 IDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVK 205
+ + E E EK ++ + E+ L E K E L+E E ++
Sbjct: 228 EELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKI---REEELRELERLLE 284
Query: 206 LCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNA-SKIKQLMSEIASKEESMKKLIKQ 264
+E +++ EL E E + E + K+K L + EE ++KL +
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344
Query: 265 NNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKR 324
EL E N + +E K+++ + E+L K E+ E ++ + +E+ E
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 325 LEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYK 378
LEE+ +E E E L + +R+ EE++ +++ + ++ ++ + L
Sbjct: 405 LEEIQEELE-ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAG 457
Score = 37.8 bits (88), Expect = 0.014
Identities = 91/475 (19%), Positives = 205/475 (43%), Gaps = 42/475 (8%)
Query: 1 MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART 60
+ +N K ++ E E ++++E + + LE ++L E +++ ++L EL+
Sbjct: 348 LAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA--- 404
Query: 61 KDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLE 120
L +++++ ++ + E+ LE++++E K+L+E+ L K I L +
Sbjct: 405 ----LEEIQEELEELEKELEELERELEELEEEIKKLEEQIN-QLESKELMIAELAGAGEK 459
Query: 121 LKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVT 180
V +E + + + EL E + ++ E +L +E E+L KE +E+
Sbjct: 460 CPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEEL-----EKELRELE 514
Query: 181 ELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQN 240
E + E+ + + ++ L+E ++ E +++ E
Sbjct: 515 EELIELLELEEALKEELEEKLEKLENLLEELEELKE------------------------ 550
Query: 241 ASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEH 300
K + ++ + ++ +++ EL+E L + R E L + + E KL E
Sbjct: 551 ----KLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELE 606
Query: 301 EELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKY 360
E L Q + LEL E E++ EE L+ + E+ ++ L+E++ +
Sbjct: 607 ERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEEL 666
Query: 361 KMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKH 420
+ ++ Q E+ ++ +++ E+ ++L EL++L + +I+ EL+ +
Sbjct: 667 EAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELL-KKLGEIEQLIEELESRK 725
Query: 421 EVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSEL 475
+ E+K +E + ++ LEE + D+ + + E E LS+L
Sbjct: 726 AELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKL 780
Score = 34.0 bits (78), Expect = 0.20
Identities = 51/239 (21%), Positives = 116/239 (48%), Gaps = 4/239 (1%)
Query: 255 EESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
E+ + L + E ++ +E ++ L +DI+ E L + +E ++L + + +++ E
Sbjct: 170 EKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEE 229
Query: 315 LDEMREEIKR----LEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL 370
L++ E ++ LEE + E +A LL E + E +K +EE+ + + L++E ++
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289
Query: 371 ANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSM 430
LEE ++ +++ + L EL++L + + + +K ++ +E++
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349
Query: 431 EANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLI 489
E N + LEE+L E + E + ++++ L + E + EL + + L+ I
Sbjct: 350 EEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 44.7 bits (106), Expect = 8e-05
Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 25/221 (11%)
Query: 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRI 279
+K+L ++ EI + +IR+ + +L ++ S E + L Q E + L + +I
Sbjct: 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96
Query: 280 EVLTKDIQI----KTEKLHKLAEEHEELIQTRRNEKKLELD------------------- 316
L + + E+ +LAE+ L ++ RN L
Sbjct: 97 ADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALN 156
Query: 317 -EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLE 375
E I L+ LK+ RA + ++ + + + K L++ER + L
Sbjct: 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216
Query: 376 -EYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSE 415
E + K + + +L+ E+ +A+ + +
Sbjct: 217 SELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAA 257
Score = 35.1 bits (81), Expect = 0.089
Identities = 46/301 (15%), Positives = 109/301 (36%), Gaps = 40/301 (13%)
Query: 83 EQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSD 142
++ L++I+KE EK R+ + + +LK E EI + + ++ E D
Sbjct: 37 DKQLKQIQKEIAA-LEKKIREQQDQRAKLEK------QLKSL-ETEIASLEAQLIETADD 88
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA 202
++ K ++ +A + L + ++ + + E + + A
Sbjct: 89 LKKLRKQIADLNARLNALEVQER--------EQRRRLAEQL------AALQRSGRNPPPA 134
Query: 203 NVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
+ ++ ++ V + LN + D ++ ++ + +EIA+++ + L+
Sbjct: 135 LLVSPEDAQRSVR---LAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322
+ + L + ++ + + L +L E Q + E + ++ EI
Sbjct: 192 SEQRA----------QQAKLAQLLEERKKTLAQLNSELSAD-QKKLEELRANESRLKNEI 240
Query: 323 KRLE-EVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNA 381
E K E A + + E KR E YK E+ +++
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE---TYKPTAPEKMLISSTGGFGALRG 297
Query: 382 K 382
+
Sbjct: 298 Q 298
Score = 31.2 bits (71), Expect = 1.3
Identities = 31/192 (16%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 282 LTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLT 341
++L ++ +E L + + E++ + ++ +++K LE + E +
Sbjct: 29 AAFSAAADDKQLKQIQKEIAAL-EKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87
Query: 342 KEKRKDEEIKRLKEEIGKY-KMLVQERDQLANMLEEYKQNAKDV-----VYYEDMKDK-- 393
K+ ++I L + ++R +LA L +++ ++ V ED +
Sbjct: 88 DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVR 147
Query: 394 LEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINE 453
L + L AE+I L + +A ++ + A + L + A +
Sbjct: 148 LAIYYGALNPARAERID----ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQA---K 200
Query: 454 QDLKIQEIQRTL 465
++E ++TL
Sbjct: 201 LAQLLEERKKTL 212
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 43.5 bits (103), Expect = 2e-04
Identities = 88/385 (22%), Positives = 176/385 (45%), Gaps = 15/385 (3%)
Query: 117 KNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLS--MDLVFK 174
K ++ EE I ++ ++E+ + +EI + E+EKL KE ++L + + +
Sbjct: 183 KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
Query: 175 ENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKD 234
+E+ L K + I L + E K +ELE++V EL KE ++
Sbjct: 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFY 302
Query: 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLH 294
+E +I++ +S + + +++ IK+ E ERL ++ +++ L K ++ E+
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362
Query: 295 KLAEEHEELIQTRRNEKKL----------ELDEMREEIKRLEEVLKENECERAGLLTKEK 344
E + + R +K+L EL+E+ + + +EE + + L + K
Sbjct: 363 LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
Query: 345 RKDEEIKRLKEEIGKYKMLVQE--RDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR 402
+ I+ LK+ GK + +E + +LEEY K + ++ E +L K
Sbjct: 423 ELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK-E 481
Query: 403 MESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQ 462
+ EK+ ++SEL K E+ ++K E + + E+ AE + E+ +K++
Sbjct: 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
Query: 463 RTLLEPIEPLSELVMKRRNIFQTLD 487
++L + +E L EL K + + LD
Sbjct: 542 KSLKKELEKLEELKKKLAELEKKLD 566
Score = 38.9 bits (91), Expect = 0.006
Identities = 101/477 (21%), Positives = 223/477 (46%), Gaps = 51/477 (10%)
Query: 33 LLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKI--K 90
++ + + E +K+K+ +L E+ + EL +LR++ ++ + E+ E+I
Sbjct: 184 FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243
Query: 91 KEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIV 150
++ E E +R L +K + + L+ +++ EE +KE + ++ +
Sbjct: 244 EKELESLEGSKRKLEEKIRELEERIEE-LKKEIEELEEKVKELKELKEKAEEYIKLSEFY 302
Query: 151 SRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKEL 210
E+ ++ K +L +E + E +KE+++K+ +E L K+ + K +EL
Sbjct: 303 EEYLDELREIEKRLSRLE-----EEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Query: 211 EKQVHELNINKEL------------DRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESM 258
E++ K ++ + +E+ + +I++ +S+I ++ +
Sbjct: 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
Query: 259 KKLIKQNNELVERLNSVEPR-----------------------IEVLTKDIQIKTEKLHK 295
KK IK+ + +E L + + ++ + K+++ EK K
Sbjct: 418 KKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
Query: 296 LAEEHEELIQTRRNEKKL-ELDEMREEIKRLEEVLKENECERAGLLTKEKRK-DEEIKRL 353
L +E EL + + E +L +L E+ E++K LEE LK+ E +E K E++ +L
Sbjct: 478 LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKL 537
Query: 354 KEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRD 413
K EI K +++ ++L L E ++ ++ E+ +L EL++L ES E+++ R
Sbjct: 538 KGEIKSLKKELEKLEELKKKLAELEKKLDEL---EEELAELLKELEELGFESVEELEERL 594
Query: 414 SELDKKHEVIAEMKLS---MEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
EL+ + E+K + +E + ++ LEE+L + + E + +++E+++ L E
Sbjct: 595 KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
Score = 36.2 bits (84), Expect = 0.040
Identities = 96/439 (21%), Positives = 203/439 (46%), Gaps = 36/439 (8%)
Query: 5 ENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART---- 60
E + +E +I E E ++ +E +L E +EL E +++ ++ EL + +
Sbjct: 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
Query: 61 --KDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKN 118
K +E L + ++ + + E+ L ++++E ++E+ + +L +K E + L K
Sbjct: 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERLEELKKKL 347
Query: 119 LELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSR-KDAEIEKLSKENEKLSMDLVFKENQ 177
EL+ + EE ++ R +E + E++++ R EKL KE E+L K +
Sbjct: 348 KELEKRLEE-LEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE-----KAKE 401
Query: 178 EVTELMKEVDKKDNYIETLLKENEANVK----------LCKELEKQVHELNINKELDRLN 227
E+ E + ++ + ++ +KE + ++ +C + H + +E
Sbjct: 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAEL 461
Query: 228 HEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLT-KDI 286
I + EI + K+++ + E+ + +LIK EL E+L +E +++ +++
Sbjct: 462 KRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-LKELAEQLKELEEKLKKYNLEEL 520
Query: 287 QIKTEKLHKLAEEHEELIQTRRNEKK--LELDEMREEIKRLEEVLKENECERAGLLTKEK 344
+ K E+ KL E+ +L ++ KK +L+E+++++ LE+ L E E E A LL + +
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
Query: 345 RK--------DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEV 396
+E +K L+ +Y L +L +E K+ +++ + + E
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
Query: 397 ELDKLRMESAEKIKLRDSE 415
L++LR E E K E
Sbjct: 641 RLEELRKELEELEKKYSEE 659
Score = 31.2 bits (71), Expect = 1.5
Identities = 75/299 (25%), Positives = 149/299 (49%), Gaps = 34/299 (11%)
Query: 94 KELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRK 153
KEL E+Y +L + + ++ + K E ++ ++++ SE+ K+
Sbjct: 451 KELLEEYTAELKRIEKELKEIEEK--------ERKLRKELRELEKVLKKESELIKLKELA 502
Query: 154 DAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQ 213
+ ++++L ++ +K +++ + K+ +E +L +++ K I++L KE E +L K+L +
Sbjct: 503 E-QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561
Query: 214 VHEL--------NINKELDRLNHEIIHKDDEIRQNASKI-------KQLMSEIASKEESM 258
+L + KEL+ L E + + +E + K E+ +E+ +
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL 621
Query: 259 KKLIKQNNELVERLNSVEPRIEVLTKDIQ-----IKTEKLHKLAEEHEELIQ--TRRNEK 311
KKL ++ ++ E L E R+E L K+++ E+ +L EE+ EL + +
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE 681
Query: 312 KLELDEMREEIKRLEEVLKENECER---AGLLTKEKRKDEEIKRLKEEIGKYKMLVQER 367
EL++ REEIK+ E LKE ER L K ++ E ++ L+E++ KYK L++ER
Sbjct: 682 LEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
Score = 29.6 bits (67), Expect = 4.2
Identities = 89/419 (21%), Positives = 187/419 (44%), Gaps = 43/419 (10%)
Query: 12 WHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQ 71
+I+ E +K++E K +L E +++L+E K +L EL + ++ +
Sbjct: 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEK----RLEELEERHELYEEAKAKKEEL 374
Query: 72 TQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEE---- 127
+ + LEK +E ++ +E+ + ++++ T I L + ELK EE
Sbjct: 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
Query: 128 -----------EIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKE- 175
++R ++E T++ I+K + + + KL KE +L L +
Sbjct: 435 KGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
Query: 176 ---NQEVTELMKEVDKKDNYI---------ETLLKENEANVKLCKELEKQVHELNINKEL 223
+E+ E +KE+++K E K E +KL E++ EL +EL
Sbjct: 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
Query: 224 DRLNHEIIHKDDEIRQNASKI-KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVL 282
+ E+ K DE+ + +++ K+L E +++ +K+ ++
Sbjct: 555 KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD----A 610
Query: 283 TKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTK 342
K+++ + ++L KL EE ++ E + L+E+R+E++ LE+ E E E
Sbjct: 611 EKELEREEKELKKLEEELDK-AFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL 669
Query: 343 EKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL 401
E + E+ L+ E+ + L + R+++ LE+ K+ ++ + +KLE L+++
Sbjct: 670 ELSR--ELAGLRAEL---EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 43.0 bits (102), Expect = 3e-04
Identities = 45/315 (14%), Positives = 117/315 (37%), Gaps = 59/315 (18%)
Query: 64 ELRDLRQQTQQSVT-----KANTCEQHLEKIKKEFKE---LQEKYQRDLNQKTETIRSLT 115
+ DL+++ + L+K++ + L+E+ ++ + E +
Sbjct: 32 HIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDV 91
Query: 116 NKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKE 175
+ LE + E+EI + I EL ++ E+++ + R +E +DL
Sbjct: 92 EEELE---KIEKEIKELEEEISELENEIKELEQEIER----LEPW----GNFDLDLSLLL 140
Query: 176 NQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDD 235
+ + +D E L+ + NV+ ++ +K + ++
Sbjct: 141 GFKYVSVFVGTVPEDKLEELKLESDVENVE----------YISTDKGYVYVV--VV---- 184
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHK 295
++ + E K + +++ E + ++ +E + K+ + E+L +
Sbjct: 185 ----VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKE 240
Query: 296 LAEEHEELIQTRRNEKKLELDEM--------------------REEIKRLEEVLKENECE 335
LA+++ E + ++EL+ + +K+L+E++ +
Sbjct: 241 LAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATGG 300
Query: 336 RAGLLTKEKRKDEEI 350
A + E ++EE
Sbjct: 301 SAYVEFVEPDEEEEE 315
Score = 37.2 bits (87), Expect = 0.018
Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 36/269 (13%)
Query: 256 ESMKKLI-----KQNNELVERL---NSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR 307
MKK++ +E++E L V ++ + + KL L + E +
Sbjct: 4 VRMKKVLIVTLKSYKDEVLEALHELGVVHI-EDLKEELSNERLRKLRSLLTKLSEALDKL 62
Query: 308 RN----EKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKML 363
R+ L ++ + +K LEE++K+ E E + + K +EEI L+ EI + +
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122
Query: 364 VQERDQLAN--MLEEYKQNAKDVVYY-----EDMKDKLEVELDKLRMESAEKIKLRD--- 413
++ + N + K V + ED ++L++E D +E K
Sbjct: 123 IERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVV 182
Query: 414 -----------SELDKKHEVIAEMKLSMEAN-NRRIQDLEEQLAENNAWINEQDLKIQEI 461
E KK ++L E + I++++E+L E +++E+
Sbjct: 183 VVVLKELSDEVEEELKKLGFE-RLELEEEGTPSELIREIKEELEEIEKERESLLEELKEL 241
Query: 462 QRTLLEPIEPLSELVMKRRNIFQTLDLIL 490
+ LE + L E + + L L
Sbjct: 242 AKKYLEELLALYEYLEIELERAEALSKFL 270
Score = 29.9 bits (68), Expect = 3.3
Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 21/210 (10%)
Query: 3 LLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKD 62
+ + K I + E +++IE + +L E EL E ++ ++ +E + D
Sbjct: 75 EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISEL-ENEIKELEQEIERLEPWGNFD 133
Query: 63 QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK 122
+L L + + ++ E E + E I + +
Sbjct: 134 LDLSLLLGFK--------YVSVFVGTVPEDKLE--ELKLESDVENVEYISTDKGYVYVVV 183
Query: 123 VQYEEEIDNRDTRIKEL------TSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKEN 176
V +E D + +K+L + +++ E+E++ KE E L +L
Sbjct: 184 VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKL 206
+ + EL+ Y+E L+ EA K
Sbjct: 244 KYLEELLAL----YEYLEIELERAEALSKF 269
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 42.3 bits (100), Expect = 5e-04
Identities = 42/259 (16%), Positives = 118/259 (45%), Gaps = 31/259 (11%)
Query: 59 RTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKN 118
R +Q+++ L + + T +++E+ +K+ E + Q ++ E +++ +
Sbjct: 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEI 236
Query: 119 LELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQE 178
EL +E+ N I++ ++ ++++ ++ ++IE+ K + ++++
Sbjct: 237 EELT----DELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK------MYEKGGV 286
Query: 179 VTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIR 238
+++ + + I + + KEL+ + +L+ + E+ DE
Sbjct: 287 CPTCTQQISEGPDRITKIKDKL-------KELQHSLEKLDTAID------ELEEIMDEFN 333
Query: 239 QNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAE 298
+ + K+ +L ++I++ ++S+ L+ + V+ IE L + E+L KL +
Sbjct: 334 EQSKKLLELKNKISTNKQSLITLVDKA-------KKVKAAIEELQAEFVDNAEELAKLQD 386
Query: 299 EHEELIQTRRNEKKLELDE 317
E +++++T ++E E
Sbjct: 387 ELDKIVKT-KSELVKEKYH 404
Score = 31.9 bits (73), Expect = 0.83
Identities = 38/214 (17%), Positives = 83/214 (38%), Gaps = 33/214 (15%)
Query: 18 EAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVT 77
+ + + +QI+ N + E ++ E + +K +K EL + A+T E+ +L + V
Sbjct: 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
Query: 78 KANTCEQHLEKIKKEFKELQEKYQR-------------------DLNQKTETIRSLTNKN 118
L K+ +++ K ++ +++ + I + +K
Sbjct: 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKL 308
Query: 119 LELKVQYEEEIDNRD-------------TRIKELTSDTSEIDKIVSRKDAEIEKLSKENE 165
EL+ E+ D ++ EL + S + + + +K+ E
Sbjct: 309 KELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE 368
Query: 166 KLSMDLVFKENQEVTELMKEVDKKDNYIETLLKE 199
+L + V +E+ +L E+DK L+KE
Sbjct: 369 ELQAEFVDNA-EELAKLQDELDKIVKTKSELVKE 401
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 41.9 bits (98), Expect = 6e-04
Identities = 27/183 (14%), Positives = 77/183 (42%), Gaps = 15/183 (8%)
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337
+++ + ++ +L A+ + +T R + EL + R+E + + + L A
Sbjct: 75 QLDDIRPQLRALRTEL-GTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVE 397
+ R ++ + L+ + L ++R QL + + + K +L+
Sbjct: 134 KAQQELARLTKQAQDLQTRLKT---LAEQRRQLEAQAQSLQASQK----------QLQAS 180
Query: 398 LDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLK 457
+L+ + + +KLR ++++++ + +A + +A + + I ++D +
Sbjct: 181 ATQLKSQVLD-LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQ 239
Query: 458 IQE 460
I +
Sbjct: 240 ISQ 242
Score = 39.6 bits (92), Expect = 0.004
Identities = 40/265 (15%), Positives = 92/265 (34%), Gaps = 53/265 (20%)
Query: 33 LLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKE 92
L + LR + Q DD +L R EL + + + + T+ L+K ++E
Sbjct: 62 LFLLNRNLRSGVFQLDDIRPQL----RALRTELGTAQGEKRAAETEREAARSELQKARQE 117
Query: 93 FKELQE----------KYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSD 142
+ +++ K Q++L + T+ + L + L Q + + L +
Sbjct: 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS----LQAS 173
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA 202
++ ++ +++ L + ++ E + + + + N +
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQI-------EQEA-----QNLATRANAAQAR------ 215
Query: 203 NVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
+EL R I+Q ++I Q +IA++ E +++
Sbjct: 216 -----------------TEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERE 258
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQ 287
+Q L +E + L Q
Sbjct: 259 RQLQRLETAQARLEQEVAQLEAYYQ 283
Score = 39.2 bits (91), Expect = 0.004
Identities = 35/247 (14%), Positives = 97/247 (39%), Gaps = 42/247 (17%)
Query: 16 ISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTK-DQELRDLRQQTQQ 74
+ + + + Q+ +L + E R A+T R EL+ RQ+ +
Sbjct: 73 VFQLDDIRPQLRALRTELGTAQGEKRA------------AETEREAARSELQKARQEREA 120
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDT 134
+ Q+L K ++E L ++ Q DL + +T+ E + Q E + +
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQ-DLQTRLKTL-------AEQRRQLEAQAQS--- 169
Query: 135 RIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
L + ++ ++ +++ L + ++ E + + + + N +
Sbjct: 170 ----LQASQKQLQASATQLKSQVLDLKLRSAQI-------EQEA-----QNLATRANAAQ 213
Query: 195 TLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK 254
+E ++ + + + + ++ + +I + ++IR+ ++++L + A
Sbjct: 214 ARTEELARRAAAAQQTAQAIQQR--DAQISQKAQQIAARAEQIRERERQLQRLETAQARL 271
Query: 255 EESMKKL 261
E+ + +L
Sbjct: 272 EQEVAQL 278
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 40.8 bits (96), Expect = 0.001
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 123 VQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTEL 182
YE+ I + ++ L + SE+ + + EIEKL E E+ ++ K ++
Sbjct: 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKD---- 473
Query: 183 MKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNAS 242
+E+ +D IE L KE E K +ELE+++ EL ++L+ K
Sbjct: 474 -REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK--------- 523
Query: 243 KIKQLMSEIASKEESMKKLIKQNNELVER-----LNSVEPRIEVLTKDIQIKTEKLHKLA 297
+++L E + E + + + LVE + E I+ + I E H A
Sbjct: 524 VVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAA 583
Query: 298 EEHEEL---IQTRRNEKKLELDEM----REEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
EE + + + + + LDE EE++R E K+ ER + ++K+E+I
Sbjct: 584 EEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEER-----ERRQKEEDI 638
Query: 351 KRLKEE 356
R+ EE
Sbjct: 639 LRIIEE 644
Score = 31.6 bits (72), Expect = 0.96
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 41/192 (21%)
Query: 262 IKQNNELVERLNSVEPRIEVLTKDIQIKTEKLH-----KLAEEHEELIQTRR-NEKKLEL 315
K +L VE ++ L ++ K LAE ++ + R EK+
Sbjct: 351 YKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTE 410
Query: 316 DEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLE 375
+E R EI E+ +K+ E E ++RL+EE + K ++E
Sbjct: 411 EEERREITVYEKRIKKLE--------------ETVERLEEENSELKRELEE--------- 447
Query: 376 EYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNR 435
+ +KLE EL++ R +D E+ + I ++ +E +
Sbjct: 448 -----------LKREIEKLESELERFR-REVRDKVRKDREIRARDRRIERLEKELEEKKK 495
Query: 436 RIQDLEEQLAEN 447
R+++LE +LAE
Sbjct: 496 RVEELERKLAEL 507
Score = 29.3 bits (66), Expect = 5.6
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 276 EPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
I V K I+ E + +L EE+ EL + E K E++++ E++R + +
Sbjct: 414 RREITVYEKRIKKLEETVERLEEENSEL-KRELEELKREIEKLESELER----FRREVRD 468
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLE 395
+ + + +D I+RL++E+ + K ++L L E ++ K + + K
Sbjct: 469 KVRKDREIRARDRRIERLEKELEEKKK---RVEELERKLAELRKMRKLELSGKGTPVK-- 523
Query: 396 VELDKLRMESAEK 408
++KL +E+ E+
Sbjct: 524 -VVEKLTLEAIEE 535
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 40.7 bits (95), Expect = 0.002
Identities = 64/357 (17%), Positives = 131/357 (36%), Gaps = 36/357 (10%)
Query: 74 QSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRD 133
Q K + + L + + K KY+ +N + + K +LK EI+ ++
Sbjct: 288 QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLK----SEIELKE 343
Query: 134 TRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYI 193
IK L S+ E+ K + ++ E+ NQE +L +E+DK +
Sbjct: 344 EEIKALQSNIDELHKQLRKQGISTEQFE------------LMNQEREKLTRELDKINIQS 391
Query: 194 ETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIAS 253
+ L K ++ + + K + + ++ D L I +I N + S +
Sbjct: 392 DKLTKSVKSRKLEAQGIFKSLEKT--LRQYDSLIQNITRSRSQIGHNVNDS----SLKIN 445
Query: 254 KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKL 313
E+ K N + + + + I+ K + K+ L + + + I +
Sbjct: 446 IEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEK 505
Query: 314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQER------ 367
E+ E + E +ENE E + ++ ++E+ L + ++
Sbjct: 506 LELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEI 565
Query: 368 --DQLANMLEEYKQNAKDVVYY-----EDMKDKLEVELDKLRMESAEKI-KLRDSEL 416
D+L L + V + K ++ L+ L E + I +LR+ E
Sbjct: 566 KLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRNLEF 622
Score = 40.0 bits (93), Expect = 0.002
Identities = 64/351 (18%), Positives = 137/351 (39%), Gaps = 35/351 (9%)
Query: 87 EKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNR----DTRIKELTSD 142
E ++E K EK+ +N +++ N NL K+Q +I + + + L SD
Sbjct: 252 EPSEQELKLGFEKFVHIINTDIANLKT-QNDNLYEKIQEAMKISQKIKTLREKWRALKSD 310
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA 202
+++ + V+ + ++ + EKL ++ KE + L+ N
Sbjct: 311 SNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEI----------------KALQSNID 354
Query: 203 NVKLCKELEKQVHELNIN-KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKL 261
EL KQ+ + I+ ++ + +N E E+ + + +L + S++ + +
Sbjct: 355 ------ELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGI 408
Query: 262 IKQNNELVERLNSVEPRIEVLTKDI--QIKTEKLHKLAEEHEELIQTRRNEKKLELDEMR 319
K + + + +S+ I I + L E+ K + E+
Sbjct: 409 FKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELN 468
Query: 320 EEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQ 379
+EI +E +K E + L K +I L + + K ++ + E + + +E +
Sbjct: 469 DEI---QERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENE 525
Query: 380 NAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSM 430
E +KLE EL+ L + S I + + + E+K+ +
Sbjct: 526 RELVAQRIE--IEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDL 574
Score = 32.3 bits (73), Expect = 0.64
Identities = 50/294 (17%), Positives = 119/294 (40%), Gaps = 18/294 (6%)
Query: 197 LKENEANVKLCKELEKQVHELN--INKELDRL---NHEIIHKDDEIRQNASKIKQLMSEI 251
LK + +EL+ + IN ++ L N + K E + + KIK L +
Sbjct: 245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKW 304
Query: 252 ASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK 311
+ + K N + ++ ++E L +I++K E++ L +EL + R +
Sbjct: 305 RALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364
Query: 312 ------KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQ 365
+L E + + L+++ +++ + +++ K L++ + +Y L+Q
Sbjct: 365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQ 424
Query: 366 ERDQLANMLEEYKQNAKDVVYYE-------DMKDKLEVELDKLRMESAEKIKLRDSELDK 418
+ + + ++ + E + + ++ + +L E E+IK +++
Sbjct: 425 NITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSIT 484
Query: 419 KHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPL 472
E I +K + + ++ LE +L+E N+ + + IE L
Sbjct: 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKL 538
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 40.4 bits (95), Expect = 0.002
Identities = 57/291 (19%), Positives = 117/291 (40%), Gaps = 38/291 (13%)
Query: 204 VKLCKELEKQVHELN--INKELDRLNHEIIHKD----DEIRQNASKIKQLMSEIASKEES 257
V+ C E+E+++ +L I K L D E +I L +EI EE+
Sbjct: 30 VRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEEN 89
Query: 258 MKKLIKQNNELVERLNSVEPRIEVL---------TKDIQIKTEKLHKLAEEHEELIQTRR 308
++ L K+ NEL E LN ++ L ++ I + L +
Sbjct: 90 LESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVI 149
Query: 309 NEKKLE-----LDEMREEI---KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKY 360
N +KLE L +EE L++ + + K +++K++ + G
Sbjct: 150 NREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFE 209
Query: 361 KMLVQERDQL-ANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKK 419
V E + + ++ + + +++ + + ++ E L+K+ ++ A+++ D ++ K
Sbjct: 210 LYDVPETEGERSELISKVNKRIEEL---QRVLEQTESHLEKVLVKIADELLAWDEQVSK- 265
Query: 420 HEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIE 470
K E N D + +AE W+ +DL ++++ L E
Sbjct: 266 ------EKAVYETLNLFNYDTKTLIAE--GWVPAKDL--EKLKAALENATE 306
Score = 32.0 bits (73), Expect = 0.75
Identities = 41/248 (16%), Positives = 89/248 (35%), Gaps = 46/248 (18%)
Query: 264 QNNELVERLNSVE-------PRIEVLTK-----DIQIKTEKLHKLAEEHEELIQTRRNEK 311
Q +L E +++ + R + + + + +IK + + + +
Sbjct: 11 QIRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFL 70
Query: 312 KLE--LDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQ 369
LE + ++ EIK +EE L+ E E L E + L EE ++E +
Sbjct: 71 DLEEEILDLEAEIKEVEENLESLEKEINELE-------EWLNVLDEEKSFLDENLEELSE 123
Query: 370 LANMLEEYKQNAKDVVYYEDMK---------DKLEVELDKLRMESAEKIKLRDSELDKKH 420
L+N+ ++K + E EL + + ++ + D K
Sbjct: 124 LSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKK 183
Query: 421 EV-------------IAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
V + ++ S + + E E + I++ + +I+E+QR L +
Sbjct: 184 TVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEG---ERSELISKVNKRIEELQRVLEQ 240
Query: 468 PIEPLSEL 475
L ++
Sbjct: 241 TESHLEKV 248
Score = 30.4 bits (69), Expect = 2.4
Identities = 47/276 (17%), Positives = 94/276 (34%), Gaps = 42/276 (15%)
Query: 24 KQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCE 83
K+ ++L+ E E++E ++ L L K +E ++ + + + +
Sbjct: 67 KEFLDLEEEILDLEAEIKEV----EENLESLEKEINEL-EEWLNVLDEEKSFLDENLEEL 121
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTETIR--------SLTNKNLELKVQY----EEEIDN 131
L + +FK L+ L I + ++ E D
Sbjct: 122 SELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDP 181
Query: 132 RDTR---IKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDK 188
+ T D ++ KI+ E+ + E E +L+ K N+ + EL +
Sbjct: 182 KKTVFIIFFVGKEDLDKVKKILDSFGFELYDVP-ETEGERSELISKVNKRIEELQRV--- 237
Query: 189 KDNYIETLLKENEANVKLCKELEKQVHELNINKEL-DRLNHEIIHKDDEIRQNASKIKQL 247
+ L K ++QV K + + LN K L
Sbjct: 238 LEQTESHLEKVLVKIADELLAWDEQVS---KEKAVYETLNLFNYDT-----------KTL 283
Query: 248 MSE--IASKE-ESMKKLIKQNNELVERLNSVEPRIE 280
++E + +K+ E +K ++ E + S+E IE
Sbjct: 284 IAEGWVPAKDLEKLKAALENATEGSGSVPSIENDIE 319
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 40.4 bits (95), Expect = 0.002
Identities = 77/398 (19%), Positives = 157/398 (39%), Gaps = 78/398 (19%)
Query: 117 KNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKEN 176
+N+E++ Q EE +++ +EI+K + K +K L K +
Sbjct: 89 ENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKF---LDKAWKKLAKKYD 145
Query: 177 QEVTELMKEVDKKDNYIETLLKE------NEANVKLCKELEKQVHEL--NINKELDRLNH 228
++E +K ++ K N+ E LLKE N +++ +EL+ ++ L + EL L
Sbjct: 146 SNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTL 205
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESM-------------KKLIKQN---------- 265
+I D EI Q K ++ + + ++
Sbjct: 206 SVIDFD-EIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTI 264
Query: 266 -NELVERLN-----SVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR--RNEKKLELDE 317
E L + IE L + I + K EE E ++ T +E KL+++E
Sbjct: 265 TEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEE 324
Query: 318 MREEIKRLEEVLKENECERAGLLTKEKRKD-----------EEIKRLKEEIGKYKMLVQE 366
++ ++ LEE+L++N +EK KD + I+ + + I L++E
Sbjct: 325 LKALLEALEEILEKNL-----QKLEEKLKDPSTSIELESITDLIESINDIIDAINELIRE 379
Query: 367 RDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEM 426
++ + L++ K AK KL + ++K ++D + +
Sbjct: 380 HNEKIDNLKKEKNKAKK----------------KLWLHLVAELK---EDIDAYQKEKKGL 420
Query: 427 KLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRT 464
+ ++ + + I+ LE ++ I E + ++ I+ T
Sbjct: 421 EKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPT 458
Score = 32.3 bits (74), Expect = 0.71
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 89 IKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDK 148
+E++EL E+ + +++ I LE + E+E ++EL + +++
Sbjct: 276 FDEEYQELIEQLEELIDKYESHIEKALE-ELESILDTEKENSEFKLDVEELKALLEALEE 334
Query: 149 IVSR-KDAEIEKLSKENEKLSM----DLVFKENQEVTELMKEVDKKDNYIETLLKENEAN 203
I+ + EKL + + + DL+ N + + + + + + I+ L KE
Sbjct: 335 ILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKN-- 392
Query: 204 VKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIK 263
K K+L H + KE +I E + I L EI E +K L K
Sbjct: 393 -KAKKKLWL--HLVAELKE------DIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEK 443
Query: 264 QNNELVERLNSVEPRIEVLTK 284
+ EL ++L ++EP + + K
Sbjct: 444 EIKELEKQLTNIEPTADEINK 464
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 39.2 bits (91), Expect = 0.005
Identities = 47/308 (15%), Positives = 114/308 (37%), Gaps = 16/308 (5%)
Query: 53 ELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEK---YQRDLNQKTE 109
+ + +L D + QSV K + + +I + ++++ + +R N E
Sbjct: 419 GPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEILEDIEAELDSLERSSNGDDE 478
Query: 110 TIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSM 169
+L + E EL S I + S + E+ +
Sbjct: 479 NEEVAMVGSLVEESSAVIERSQ------ELEGAVSRISEFTSVLEHEVTVCQDLLDG--K 530
Query: 170 DLVFKENQEVTELMKEVDKKDNYIETLLKEN-EANVKLCKELEKQVHELNINKELDRLNH 228
+ K QE + ++ V ++ ++ + E E + + ++ +
Sbjct: 531 ADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCI 590
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQI 288
+ + + ++ + +S+ E K +++ + +E L S +++
Sbjct: 591 STLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSEL----DASQESNS 646
Query: 289 KTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDE 348
E K E E ++ R + + E ++E+I LE+ L++ L+ K + +E
Sbjct: 647 LAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEE 706
Query: 349 EIKRLKEE 356
+I+R ++E
Sbjct: 707 KIERAEQE 714
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 38.6 bits (91), Expect = 0.007
Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 209 ELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNEL 268
E K+ L +E+ +L +E + E+R+ +++++L + KEE++ + ++ +
Sbjct: 52 EAIKKEALLEAKEEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
Query: 269 VERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQ-----TRRNEKKLELDEMREEIK 323
E L E +E ++++ K E+L +L EE + ++ T K++ L+++ EE +
Sbjct: 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEAR 168
Query: 324 R 324
Sbjct: 169 H 169
Score = 33.6 bits (78), Expect = 0.23
Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 90 KKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKI 149
K+E +L+ +++++L ++ ++ L + L Q EE +D + +++ + + +K
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLL----QKEENLDRKLELLEKREEELEKKEKE 118
Query: 150 VSRKDAEIEKLSKENEKL 167
+ +K E+EK +E E+L
Sbjct: 119 LEQKQQELEKKEEELEEL 136
Score = 30.5 bits (70), Expect = 2.5
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 288 IKTEKLHKLAEEHEELIQTRRNE----KKLELDEMREEIKRL-EEVLKENECERAGLLTK 342
I K+ + EE + +++ + E KK L E +EEI +L E KE
Sbjct: 28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKEL---------- 77
Query: 343 EKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR 402
+ + E+++L++ L+Q+ + L LE ++ +++ E ++ + EL+K
Sbjct: 78 -RERRNELQKLEKR------LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
Query: 403 MESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQL 444
E E I+ E ++ E I+ + + EA ++ +EE+
Sbjct: 131 EELEELIE----EQLQELERISGLT-AEEAKEILLEKVEEEA 167
Score = 30.1 bits (69), Expect = 2.9
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 10 KEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLR 69
+E H +E E K++ + N+L + E+ L + + D KL L K +++EL
Sbjct: 64 EEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEK----REEELEKKE 116
Query: 70 QQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLT 115
++ +Q +Q LEK ++E +EL E+ Q+ E I LT
Sbjct: 117 KELEQK-------QQELEKKEEELEELIEE----QLQELERISGLT 151
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 38.6 bits (89), Expect = 0.009
Identities = 89/448 (19%), Positives = 172/448 (38%), Gaps = 24/448 (5%)
Query: 24 KQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCE 83
K E +E E ++K ++ + A A+ K +E + + ++ KA +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEEDK 1404
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIK-ELTSD 142
+ +++KK +K + +K E + K E K + EE + + K E
Sbjct: 1405 KKADELKK--AAAAKKKADEAKKKAEEKK----KADEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVT----ELMKEVDKKDNYIETLLK 198
E K E K E D K+ +E E K + K E
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
Query: 199 ENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESM 258
E K+ E+ K ++ + + K +E+++ K K +E A K E
Sbjct: 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK---AEEAKKAEED 1575
Query: 259 KKLIKQNNELVERLNS--VEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNE----KK 312
K + + E ++ +E +++ ++ ++K E+ K E + + ++ E K
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
Query: 313 LELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLAN 372
+L + E K+ E LK+ E E +E +K EE K+ EE K + ++ +
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Query: 373 MLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEA 432
E + A+++ E + K EL K E+ K + E ++ + E K E
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
Query: 433 NNRRIQDLEEQLAENNAWINEQDLKIQE 460
+ +E+ + E++ I+E
Sbjct: 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Score = 35.1 bits (80), Expect = 0.094
Identities = 61/299 (20%), Positives = 123/299 (41%), Gaps = 19/299 (6%)
Query: 38 QELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQ 97
E ++ + K + A+ A+ D+ + ++ + KA ++ EK K E +
Sbjct: 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
Query: 98 EKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEI 157
E+ + +K E + +E ++ EE + + +E K K AE
Sbjct: 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEE--EKKMKAEEAKKAEEAKIKAEELKKAEE 1630
Query: 158 EKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHEL 217
EK E K +E ++ EL K ++ K+ E + K +E +K
Sbjct: 1631 EKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA---- 1683
Query: 218 NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP 277
+E ++ E + K+ E + A ++K+ +E K E +KK ++N E
Sbjct: 1684 ---EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA- 1739
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECER 336
++ + K E+ K EE +++ ++ E+K + +E+ +EE L E + +R
Sbjct: 1740 ------EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 38.1 bits (89), Expect = 0.013
Identities = 75/459 (16%), Positives = 148/459 (32%), Gaps = 59/459 (12%)
Query: 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQ-----------KDDKLLELAK 56
+ + ++ E ++ VK I LE E E+ E K K + + L K
Sbjct: 876 RVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKK 935
Query: 57 TARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTN 116
D E + + L +++ + KE E+Y+ L + T +R
Sbjct: 936 LLNNIDLEEGPSIEYVKLPE------LNKLHEVESKLKETSEEYEDLLKKSTILVREGNK 989
Query: 117 KNLELKVQYEE--EIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSM----- 169
N ELK +E E+ + ++E T E+ V+ + + +S E+ +LS+
Sbjct: 990 ANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQ 1049
Query: 170 DLVFKENQEVTELMKEVDKKDNYIETLL--------------KENEANVKLCKELEKQV- 214
L E +L E L NVK + + +
Sbjct: 1050 KLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLV 1109
Query: 215 ---HELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271
+ L + + + Q + ++ + +++ + + L + N E
Sbjct: 1110 KPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANL--EA 1167
Query: 272 LNSVEPRIEVLTKDIQIKTEKLHKLA-EEHEELIQTRRNEKKLELDEMREEIKRLEEVLK 330
L S P + K + L+ + + +NE ++ R +++ K
Sbjct: 1168 LPSPPPFAALSEKR--LYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKK 1225
Query: 331 ENECERAGLLTKEKRKDEEIKRLKE-EIGKYKM--LVQERDQLANMLEEYKQNA------ 381
K K L+ + + N+L YK
Sbjct: 1226 LISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPAT 1285
Query: 382 -KDVVYYEDMKD--KLEVELDKLRMESAEKIKLRDSELD 417
++ Y ++ L + LR +SA ++ ELD
Sbjct: 1286 INSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELD 1324
Score = 36.6 bits (85), Expect = 0.036
Identities = 62/364 (17%), Positives = 127/364 (34%), Gaps = 38/364 (10%)
Query: 137 KELTSDTSEIDKIVSRKDA-EIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIET 195
+ I KI + + +L K + + + + KE I
Sbjct: 762 RRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821
Query: 196 LLKENEANVKLCKELEKQVHELNINKE---------LDRLNHEIIHKDDEIR-QNASKIK 245
L K + KL + E E ++ E L + K + I Q+A +++
Sbjct: 822 LQKTIKREKKLRETEEV---EFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVE 878
Query: 246 QLMSEIASKEESMKK---LIKQNNELVERLNSVEPRIE-VLTKDIQIKTEKLHKLAEEHE 301
++ + +K L N EL + ++ + L ++++ KTE + +L +
Sbjct: 879 LAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLN 938
Query: 302 ----ELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357
E + K EL+++ E +L+E +E ++ +K+ +
Sbjct: 939 NIDLEEGPSIEYVKLPELNKLHEVESKLKETSEE--------------YEDLLKKSTILV 984
Query: 358 GKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELD 417
+ E L E + + +L VE+ +L+ S I +EL
Sbjct: 985 REGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASK-IISSESTELS 1043
Query: 418 KKHEVIAEMKLSMEANNR-RIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELV 476
+ L + NN+ + + +L N+ ++++ L E LL+ I V
Sbjct: 1044 ILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEV 1103
Query: 477 MKRR 480
R
Sbjct: 1104 TNRN 1107
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 37.7 bits (88), Expect = 0.014
Identities = 43/239 (17%), Positives = 98/239 (41%), Gaps = 22/239 (9%)
Query: 271 RLNSVEPRIEVLTKDIQ------IKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKR 324
+ V P IE L +D + ++ + LH EE + + E++ + +R++++
Sbjct: 240 AIQKVAPEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRT 299
Query: 325 LEEVLKENECERAGLLT----KEKRKDEEIKRLKEEIGKY-----KMLVQERDQLANMLE 375
LE+ LKE E L+ K E++ L+++ G + + L + DQL ++
Sbjct: 300 LEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRS 359
Query: 376 EYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNR 435
E ++ + ++ + ++L+ + E+++ + +++ I E +R
Sbjct: 360 ELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIR------EEKDR 413
Query: 436 RIQDLEEQL-AENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILGLT 493
+ +EE L A + + + E E L L + + T + + L
Sbjct: 414 QKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLE 472
Score = 34.3 bits (79), Expect = 0.18
Identities = 72/394 (18%), Positives = 138/394 (35%), Gaps = 59/394 (14%)
Query: 13 HTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART----KDQELRDL 68
K +AE + Q + + E E R +KQ L L ++ + + +
Sbjct: 620 VAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER 679
Query: 69 RQQTQQSVTKANT-CEQHLEKIKKEFKELQEKYQRDLNQKTE----TIRSLTNKNLELKV 123
+QQ + + + + +Q LE+ + + L++ ++ ++ L N+ +L
Sbjct: 680 KQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSA 739
Query: 124 QYEEEIDNRDTRIKEL----TSDTSEID---KIVSRKDAEIEKLSKENEKLSMDLVFKEN 176
E R+KEL + + +D V +IE+L E+++
Sbjct: 740 AIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIA-----VRR 794
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDE 236
EV E + + + ++L +E +ELE EL
Sbjct: 795 PEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQEL--------------- 839
Query: 237 IRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKL 296
IK E+ K L KQ ++L E L + + Q+ K
Sbjct: 840 ----TRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMR------QLAELKEPAN 889
Query: 297 AEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKD--------- 347
A + E I R + +L+E + + KRL LK+ G++
Sbjct: 890 ANQAEGSISERLD----QLEEFKRKRKRLSGDLKKFLERFDGVIKDHSGSGLYETWQKLR 945
Query: 348 EEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNA 381
L ++ Y+ L ++L ++L K+ A
Sbjct: 946 SNDSTLGDKGIDYRELFPYLEELLDLLVPQKRQA 979
Score = 33.9 bits (78), Expect = 0.21
Identities = 72/389 (18%), Positives = 162/389 (41%), Gaps = 42/389 (10%)
Query: 37 EQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKEL 96
E ELRE ++Q ++ L Q ++Q ++ + +AN LE+ K+ E
Sbjct: 602 ETELRERLQQAEEAL-----------QSAVAKQKQAEEQLVQAN---AELEEQKRAEAEA 647
Query: 97 QEKYQRDLNQKTETIRSLTNKNLELKVQYEEEI-DNRDTRIKELTSDTSEIDKIVSRKDA 155
+ + Q ++ L N+ LK + E I + + +L +++ +++ ++ A
Sbjct: 648 RTALK----QARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQA 703
Query: 156 EIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCK-----EL 210
+E L + +L + + K EL ++ + IE + +A +K K EL
Sbjct: 704 FLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDREL 763
Query: 211 EKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVE 270
+ N KEL R E+ + I ++++ + + L ++ L
Sbjct: 764 ASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAI 823
Query: 271 RLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLK 330
+L +E E L +++ + ++ E+ + + EK+ LD++ E ++ L + +
Sbjct: 824 QLRELESSAEELQQELTRLIKDTKLRRKKLEQ--ERKALEKQ--LDQLDELLRGLRDEM- 878
Query: 331 ENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDM 390
+ L + ++ + E + + + ++R +L+ L+++ + V +
Sbjct: 879 ----RQLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGV-----I 929
Query: 391 KDKLEVELDKLRMESAEKIKLRDSELDKK 419
KD L E+ +K++ DS L K
Sbjct: 930 KDHSGSGLY----ETWQKLRSNDSTLGDK 954
Score = 31.6 bits (72), Expect = 1.3
Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 35/281 (12%)
Query: 83 EQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKE---- 138
E+ L + ++E +E + + ++ L + Q +E D + +
Sbjct: 276 EERLAEEQEERQEAKNRLRQQLRTLED--------------QLKEARDELNQELSAANAK 321
Query: 139 LTSDTSEIDKIVSRK----DAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
L +D SE++ + +K DA+IE+L + ++L + E +EV + + K ++
Sbjct: 322 LAADRSELELLEDQKGAFEDADIEQLQADLDQL--PSIRSELEEVEARLDALTGKHQDVQ 379
Query: 195 TLLKENEANVKLCKELE---KQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEI 251
+ + +K E + I +E DR ++D + +QL +
Sbjct: 380 RKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAA--IEEDLQALESQLRQQLEAGK 437
Query: 252 ASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK 311
E +L + L +RL+S E L ++I E L K EE Q N +
Sbjct: 438 LEFNEEEYELELRLGRLKQRLDSATATPEELE-QLEINDEALEKA---QEEQEQAEANVE 493
Query: 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKR 352
+L+ + + +R E + ER L + ++ +E++
Sbjct: 494 QLQSELRQLRKRRDEALEALQRAERR--LLQLRQALDELEL 532
Score = 30.4 bits (69), Expect = 2.5
Identities = 77/483 (15%), Positives = 172/483 (35%), Gaps = 47/483 (9%)
Query: 9 FKEWHTKISEA-ELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRD 67
H + E L ++I+ + + LE E +++K + A
Sbjct: 371 LTGKHQDVQRKYERLKQKIKEQLERDLEKNNE--RLAAIREEKDRQKAAIEEDLQALESQ 428
Query: 68 LRQQTQQSVTKANTCEQHLEK-------------IKKEFKELQEKYQRDLNQKTETIRSL 114
LRQQ + + N E LE E E E L + E
Sbjct: 429 LRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQA 488
Query: 115 TNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFK 174
+L+ + + RD ++ L + ++ D +LS + L L F
Sbjct: 489 EANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSL---LHFL 545
Query: 175 ENQE-----------VTELMKEVDKKDNYIETLLKENEANVKL----CKELEKQVHELNI 219
N+ EL++ D +E + V L + +E +
Sbjct: 546 RNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETEL 605
Query: 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEI--ASKEESMKKLIKQNNELVERLNSVEP 277
+ L + + + +Q ++ Q +E+ + E+ + + L + E
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECER- 336
+ ++ I K ++ E ++ + K L++ + ++ L++ +E ER
Sbjct: 666 QSLKDKLELAIAERK-----QQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERL 720
Query: 337 AGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEV 396
A E D ++ +L I + Q + +L + ++Y + + + +L+
Sbjct: 721 AKWQVVEGELDNQLAQLSAAIEAAR--TQAKARLKELKKQYDRELASLDVDPNTVKELKR 778
Query: 397 ELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456
++++L + E+I +R E+ + + E L ++ +L QL E + + ++L
Sbjct: 779 QIEELE-TTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELES--SAEEL 835
Query: 457 KIQ 459
+ +
Sbjct: 836 QQE 838
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 37.5 bits (88), Expect = 0.017
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 42/204 (20%)
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQI 288
++ +++ + + + E++ + I E +LN P E L I
Sbjct: 102 KLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPP-EELQSLNSI 160
Query: 289 KTEKLHKLA-----------EEHEELIQTRRNEKKLE--LDEMREEI------KRLEEVL 329
KLA EE +E+++T +++LE LD + +EI KR+ + +
Sbjct: 161 DDPG--KLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKV 218
Query: 330 KENECERAGLLTKEKRK---DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVY 386
KE + K +R+ E++K +++E+G E D + +EE ++ + +
Sbjct: 219 KEQ-------MEKSQREYYLREQLKAIQKELG-------EDDDDKDEVEELREKIEKLKL 264
Query: 387 YEDMKDKLEVELDKLRM---ESAE 407
++ K+K E EL KL SAE
Sbjct: 265 PKEAKEKAEKELKKLETMSPMSAE 288
Score = 30.2 bits (69), Expect = 3.1
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 49/223 (21%)
Query: 111 IRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMD 170
I L+++ + + E D E + EI+ +V +E E+ +K N+K+ +
Sbjct: 100 ISKLSDEEEFFEAEIELLPD-------EPIDEEREIEALVRSILSEFEEYAKLNKKIPPE 152
Query: 171 LVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEI 230
+ + + +D +T+ A K EKQ L +RL +
Sbjct: 153 EL--------QSLNSIDDPGKLADTI-----AAHLPLKLEEKQ-EILETLDVKERLEKLL 198
Query: 231 IHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNE--LVERLNSVEPRIEVLTKDIQI 288
+ EI + QL I K + +++ K E L E+L K IQ
Sbjct: 199 DLLEKEI-----DLLQLEKRIRKKVK--EQMEKSQREYYLREQL-----------KAIQ- 239
Query: 289 KTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKE 331
++L + ++ +E+ + R +K+E ++ +E K E+ KE
Sbjct: 240 --KELGEDDDDKDEVEELR---EKIEKLKLPKEAK--EKAEKE 275
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 37.4 bits (87), Expect = 0.018
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 198 KENEANVKLCKELEKQVHELN-INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEE 256
+++ EL + +++D L I EI+ ASKIKQ+ E+ + +
Sbjct: 253 VPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQ 312
Query: 257 SMKKL---IKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKL 313
++L K VE L E + L + +E+L +LA++ E +
Sbjct: 313 ENEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEA-------HRTP 365
Query: 314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL-AN 372
+DE R LKE + + +R+ +EIK+L+ +I + + +Q ++QL
Sbjct: 366 LIDEYRS--------LKEKNRNKE---DETQRQLDEIKKLRNKIEELESELQTKEQLYKQ 414
Query: 373 MLEEYKQNAKDV 384
+L+EY+ K V
Sbjct: 415 LLDEYENAPKSV 426
Score = 33.6 bits (77), Expect = 0.29
Identities = 23/150 (15%), Positives = 63/150 (42%)
Query: 233 KDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEK 292
K + Q A++ + ++ + S + + + T+ ++
Sbjct: 190 KRQRLDQKAAEYLRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFTRTEKVEQAATA 249
Query: 293 LHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKR 352
++ + + R E++ EL+ ++E+I LE ++E E L +K K+ +EE+
Sbjct: 250 AAEVPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTT 309
Query: 353 LKEEIGKYKMLVQERDQLANMLEEYKQNAK 382
+++E + + + + + +L + + N
Sbjct: 310 VRQENEELEEEYKIKKRTVELLPDAENNVA 339
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 37.3 bits (87), Expect = 0.019
Identities = 78/428 (18%), Positives = 168/428 (39%), Gaps = 48/428 (11%)
Query: 86 LEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYE--EEIDNRDTRIKELTSDT 143
L ++ E EL E+ +R Q+ + + + L+ E EE++ + I++L
Sbjct: 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETI 267
Query: 144 SEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEAN 203
+E ++ E+ L + E+L +E +L+ E D E + E
Sbjct: 268 AETEREREELAEEVRDLRERLEELE--------EERDDLLAEAGLDDADAEAVEARREEL 319
Query: 204 VKLCKELEKQVHELNI-----NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESM 258
+EL ++ E + N+E + L + ++ + + +L SE+ E++
Sbjct: 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379
Query: 259 KKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEM 318
+ ++ EL E + + R D + AE+ E ++ R+E + E+
Sbjct: 380 EDRREEIEELEEEIEELRERFG----DAPVDLGN----AEDFLEELREERDELREREAEL 431
Query: 319 REEIKRLEEVLKENE-------CERAGLLTKE-------KRKDEEIKRLKEEIGKYKMLV 364
++ E ++E E C G + + E ++ L+ E+ + V
Sbjct: 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491
Query: 365 QERDQLANMLEEYKQNAKDVVYYEDMKDKLE---------VELDKLRMESAEKIKLR-DS 414
+E ++ E+ + + E+ ++ LE +E + R E + ++
Sbjct: 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551
Query: 415 ELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSE 474
E ++K E AE + E + +L +LAE I E +I+ + + + + +
Sbjct: 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIER 610
Query: 475 LVMKRRNI 482
L KR +
Sbjct: 611 LREKREAL 618
Score = 36.6 bits (85), Expect = 0.033
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
Query: 246 QLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL-- 303
QL ++I KEE +L ERLN +E + L ++I+ E+ + E +E
Sbjct: 191 QLKAQIEEKEEK---------DLHERLNGLESELAELDEEIERYEEQREQARETRDEADE 241
Query: 304 IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI------ 357
+ E++ EL+ + EI+ L E + E E ER L + + E ++ L+EE
Sbjct: 242 VLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAE 301
Query: 358 -----GKYKMLVQERDQLANMLEEYKQNAKDVVY-----------YEDMKDKLEVELDKL 401
+ + R++L + EE + ++ + D LE ++L
Sbjct: 302 AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL 361
Query: 402 RMESAE---KIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAE 446
R E+AE +++ ++ + E I E++ +E R D L
Sbjct: 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
Score = 32.7 bits (75), Expect = 0.50
Identities = 82/441 (18%), Positives = 174/441 (39%), Gaps = 44/441 (9%)
Query: 35 EFEQELRETMKQKD---DKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKK 91
+ + + ET ++++ +++ +L + ++E DL + A E E+++
Sbjct: 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED 321
Query: 92 EFKELQEKYQR---DLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDK 148
+EL+++ + E SL +L+ + EE + EL ++
Sbjct: 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED 381
Query: 149 IVSRK---DAEIEKLSKENEKLSMDL--VFKENQEVTELMKEVDKKDNYIETLLKENEAN 203
+ EIE+L + +DL +E+ E E+ +++ +E L+
Sbjct: 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
Query: 204 VKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIK 263
V+ + L + + ++ + +E R+ +++ + ++ + E +++ ++
Sbjct: 442 VEEAEALLEAGKCPECGQPVE--GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE 499
Query: 264 QNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIK 323
+ +LVE E RIE ++ + E L +L E E I EK+ +E+RE
Sbjct: 500 RAEDLVE----AEDRIE----RLEERREDLEELIAERRETI----EEKRERAEELRERAA 547
Query: 324 RLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKD 383
LE E E +R E+ +E + + E K L + + L +
Sbjct: 548 ELEA---EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL------ 598
Query: 384 VVYYEDMKDKLEVELDKL---RMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDL 440
E E+++L R AE R L +K E E L E + RI++
Sbjct: 599 -----AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE--LEAEFDEARIEEA 651
Query: 441 EEQLAENNAWINEQDLKIQEI 461
E ++ + + K+ E+
Sbjct: 652 REDKERAEEYLEQVEEKLDEL 672
Score = 30.8 bits (70), Expect = 2.3
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 32/246 (13%)
Query: 127 EEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEV 186
E I+ R++EL ++ ++++ V + +E+ ++ E +
Sbjct: 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAE----------------DLVEAEDRI 511
Query: 187 DKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQ 246
++ + E L + + +E ++ EL E+ + +E R+ A++
Sbjct: 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAA------ELEAEAEEKREAAAE--- 562
Query: 247 LMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQT 306
E E + +L + EL ER+ S+E RI L I +++ +L E+ E L
Sbjct: 563 AEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREAL-AE 620
Query: 307 RRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQE 366
+E++ L E RE + LE E E A + K+ + L++ K L +E
Sbjct: 621 LNDERRERLAEKRERKRELEAEFDEARIEEA-----REDKERAEEYLEQVEEKLDELREE 675
Query: 367 RDQLAN 372
RD L
Sbjct: 676 RDDLQA 681
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 37.3 bits (86), Expect = 0.023
Identities = 49/290 (16%), Positives = 117/290 (40%), Gaps = 17/290 (5%)
Query: 37 EQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKEL 96
E EL+E + KL ++ + EL+ ++ + + A + ++ +KE EL
Sbjct: 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL 749
Query: 97 QEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKI---VSRK 153
+ K QK ++E + I + K +D + +++ +
Sbjct: 750 RNK-----LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDV 804
Query: 154 DAEIEKLSKENEKLSMDLVFKE-NQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEK 212
+ +I + + + + +D ++ NQE E E+D + IE K + + + L+
Sbjct: 805 ERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
Query: 213 QVHELNINK--------ELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQ 264
+ +EL K + +++ E++ +IK + + E ++K ++
Sbjct: 865 KTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924
Query: 265 NNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
EL+ + + + DI+ K + +H ++ E IQ +++ +
Sbjct: 925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ 974
Score = 31.2 bits (70), Expect = 1.5
Identities = 62/379 (16%), Positives = 159/379 (41%), Gaps = 33/379 (8%)
Query: 88 KIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEID 147
+ + E +E Q L + ++S ++ + + + +E + R + EI
Sbjct: 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIP 747
Query: 148 KIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKD-----NYIETLLKENEA 202
++ ++ ++K++++ ++L D+ +E T + +E K +E E +
Sbjct: 748 ELRNK----LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKD 803
Query: 203 NVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
+ + ++ ++++ + ++N E K E+ + SK E +KLI
Sbjct: 804 VERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT-----------VVSKIELNRKLI 852
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322
+ E ++ L S ++ I ++ + E+ EL T E+ + +E+
Sbjct: 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS-TEVQSLIREIKDAKEQD 911
Query: 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAK 382
LE L++++ E+ L++ K+ K+ ++++ K V+ +E Q+ K
Sbjct: 912 SPLETFLEKDQQEKEELIS---SKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK 968
Query: 383 DVVYYEDMKDKL--------EVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANN 434
D Y + + +L E E + ++ ++ +D + K E + L++
Sbjct: 969 DD-YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRE 1027
Query: 435 RRIQDLEEQLAENNAWINE 453
++++EE+L ++ + +
Sbjct: 1028 NELKEVEEELKQHLKEMGQ 1046
Score = 29.6 bits (66), Expect = 5.1
Identities = 75/457 (16%), Positives = 169/457 (36%), Gaps = 44/457 (9%)
Query: 45 KQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKY---- 100
KQ +D L +K L L ++ N LE +++ ++K
Sbjct: 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC 632
Query: 101 -QRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSR---KDAE 156
+D E ++ K+ + + I +LT + + R +AE
Sbjct: 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE 692
Query: 157 IEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHE 216
+++ + + S + + + TE E+ KK+ + +L + EK++ E
Sbjct: 693 LQEFISDLQ--SKLRLAPDKLKSTE--SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPE 748
Query: 217 LNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKE-------------ESMKKLIK 263
L +L ++N +I ++I + + + +M E S + +K + +
Sbjct: 749 L--RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVER 806
Query: 264 QNNELVERLNSVEPRIEV--LTKDIQIKTEKLHKLAEEHEEL--IQTRRNEKKLELDEMR 319
+ + +L + V + ++ Q K +L + + E + + E+ L
Sbjct: 807 KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866
Query: 320 EEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYK-----------MLVQERD 368
E+K + + N R + E++ L EI K QE++
Sbjct: 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
Query: 369 QLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKL 428
+L + E + A+D V D+K+K++ ++ + +D L +K + +
Sbjct: 927 ELISSKETSNKKAQDKV--NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA 984
Query: 429 SMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTL 465
+E + + + E + I+ Q ++ + +Q L
Sbjct: 985 QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 36.1 bits (84), Expect = 0.038
Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 216 ELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSV 275
L +E+ +L E+ + E+++ +++++L + +EE++ + ++ ++ E L
Sbjct: 53 LLEAKEEVHKLRAEL---ERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKK 109
Query: 276 EPRIEVLTKDIQIKTEKLHKLAEEHEELIQ-----TRRNEKKLELDEMREE--------I 322
E + K++ K E+L +L E E ++ T+ K++ L+E+ EE I
Sbjct: 110 EKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLI 169
Query: 323 KRLEEVLKENECERA 337
K +EE KE ++A
Sbjct: 170 KEIEEEAKEEADKKA 184
Score = 34.9 bits (81), Expect = 0.092
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 20/147 (13%)
Query: 90 KKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKI 149
K+E +L+ + +R+L ++ ++ L + L Q EE +D + + + + + +K
Sbjct: 57 KEEVHKLRAELERELKERRNELQRLERRLL----QREETLDRKMESLDKKEENLEKKEKE 112
Query: 150 VSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVK---- 205
+S K+ +++ +E E+L + +E + ++ L +E K E LL+E E +
Sbjct: 113 LSNKEKNLDEKEEELEELIAE-QREELERISGLTQEEAK-----EILLEEVEEEARHEAA 166
Query: 206 -LCKELEKQVHELNINKELDRLNHEII 231
L KE+E++ E E D+ EI+
Sbjct: 167 KLIKEIEEEAKE-----EADKKAKEIL 188
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 35.6 bits (83), Expect = 0.049
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 301 EELIQTRRN-EKKLELDEMREEIKRLEEVLKE----NECERAGLLTKEKRKDEEIKRLKE 355
++L + N L++D ++E ++ LE ++ N+ ERA +TKE LK
Sbjct: 10 KDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKEL------SSLKA 63
Query: 356 EIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR--MESAEKIKLRD 413
++ + L Q D L +LE + D E+ + E EL L + + E +L
Sbjct: 64 KLDTLEELRQRLDDLEELLELA-EEEDD----EETLAEAEAELKALEKKLAALELERLLS 118
Query: 414 SELDKK 419
E D
Sbjct: 119 GEYDAN 124
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 35.5 bits (82), Expect = 0.068
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 43 TMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQR 102
TMK+ ++ L+ A A + QE +++ + ++ EQ ++ I +E ELQ K R
Sbjct: 428 TMKETANRPLKGATPAASDIQEAKEILVEHYDNI------EQKIDDIDQEIAELQAKRTR 481
Query: 103 DLNQ 106
+ Q
Sbjct: 482 LVQQ 485
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 34.9 bits (81), Expect = 0.096
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 30/182 (16%)
Query: 234 DDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKL 293
D+E + +K+++S I + M ++V + +E+L
Sbjct: 717 DEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVL-----------------VGSEEL 759
Query: 294 HKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRL 353
E +E+ I+ N ++LE+ E +E E L E+ RL
Sbjct: 760 EDRLEANEDDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARL 819
Query: 354 KEEIGKYKMLVQERDQLANML--EEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKL 411
++E+ K + E D++ L E + A + V +E E +KL + KL
Sbjct: 820 EKELEKLEK---EIDRIEKKLSNEGFVAKAPEEV--------VEKEKEKLAEYQVKLAKL 868
Query: 412 RD 413
+
Sbjct: 869 EE 870
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.9 bits (80), Expect = 0.10
Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 23/219 (10%)
Query: 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLH 294
D +R S I L ++ S ++ + KQ + + + IE L+ + + +
Sbjct: 176 DMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYN 235
Query: 295 KLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLK 354
L EL + + R E +K E + + L K E +R
Sbjct: 236 NLKSALN------------ELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHM 283
Query: 355 EEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDS 414
+ I + + +Y + D+ + + ++ E++K I + S
Sbjct: 284 KIINDPVYKNRNY------INDYFKYKNDIENKKQILSNIDAEINKY-----HAIIKKLS 332
Query: 415 ELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINE 453
L K + + K + N +I +LE + N+++
Sbjct: 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS 371
Score = 30.6 bits (69), Expect = 2.1
Identities = 81/459 (17%), Positives = 172/459 (37%), Gaps = 41/459 (8%)
Query: 40 LRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQ-- 97
L E +K + +L + K ++ ++ ++ + N +K EL
Sbjct: 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSL 247
Query: 98 ----EKYQRDLNQKTETIRSLTNKNLELKVQYEE--EIDN-----RDTRIKELTSDTSEI 146
+Y+ ++ + KN K E +I N I + ++I
Sbjct: 248 EDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDI 307
Query: 147 D---KIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEAN 203
+ +I+S DAEI K +KLS+ + K+ + + D +N I L
Sbjct: 308 ENKKQILSNIDAEINKYHAIIKKLSV--LQKDYNDYIKKKSRYDDLNNQILELEGYEMDY 365
Query: 204 VKLCKELE---KQVHELNINKELDRLNHEIIHKDDEIRQNA---------SKIKQLMSEI 251
K +E K++ E + N E I K EI +A K++ + S++
Sbjct: 366 NSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKV 425
Query: 252 ASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEH-------EELI 304
+S + ++ L + +EL + + + + EK + + + EE I
Sbjct: 426 SSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKI 485
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364
+ E K +++ + KR E + E + K + +++ +K +I + K
Sbjct: 486 REIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKH 545
Query: 365 QERDQLANMLEEYK---QNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHE 421
+ +++ N + K ++K + + ++++ R S E K + + E
Sbjct: 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQE 605
Query: 422 VIAEMKLSMEANNRRIQDLEEQLAENNAWINE-QDLKIQ 459
+ ++ I+++E + N NE Q+ KI
Sbjct: 606 IEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
Score = 30.3 bits (68), Expect = 3.2
Identities = 93/482 (19%), Positives = 175/482 (36%), Gaps = 41/482 (8%)
Query: 11 EWHTKISEAELLVKQIE--YKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDL 68
+ + E E + KQI K++ + E E K+A + L D+
Sbjct: 191 KLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM 250
Query: 69 RQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQ---Y 125
+ + + + A + + +KEL+E++ + +N R+ N + K
Sbjct: 251 KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENK 310
Query: 126 EEEIDNRDTRIK----------ELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVF-- 173
++ + N D I L D ++ K SR D ++ E E MD
Sbjct: 311 KQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYL 369
Query: 174 ----KENQEVTELMKEVDKKDNYIETLLKENEANVKLCKEL--EKQVHELNINKELDRLN 227
+++ E K +++ +I +LK E + K+ E V +I+ ++ LN
Sbjct: 370 KSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLN 429
Query: 228 HEI---IHKDDEIRQNASKI----KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
I DE+ +N + + EE +I NE RL IE
Sbjct: 430 QRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIE 489
Query: 281 VLTKDIQIKTEKLHKL-----AEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
+ KDI K L K +EE + I + D +IK LK+ +
Sbjct: 490 IEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIK--INELKDKHDK 547
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLE 395
+ + K E K + V + + K + E ++E
Sbjct: 548 YEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIE 607
Query: 396 VELDKLRMESAEKIKLRDSE---LDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWIN 452
+ + + I+ ++E L+ K+ I E K+ +E +I + ++Q+AE ++ I
Sbjct: 608 IGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIP 667
Query: 453 EQ 454
+
Sbjct: 668 DL 669
Score = 29.5 bits (66), Expect = 4.8
Identities = 33/246 (13%), Positives = 100/246 (40%), Gaps = 8/246 (3%)
Query: 87 EKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK--VQYEEEIDNRDTRIKELTSDTS 144
EKI K + ++N+ + + +L+ E+ ++ + +E+ +
Sbjct: 497 EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYK 556
Query: 145 EID-KIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEA- 202
+ + + K + ++ + E+ + + +++ + IE ++++
Sbjct: 557 SLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY 616
Query: 203 NVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
K +E+E + + LN + N +I +++R K+ ++EI S +K++
Sbjct: 617 IDKSIREIENEANNLNNKYNEIQENKILI---EKLRGKIDNYKKQIAEIDSIIPDLKEIT 673
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322
+ N++ + L ++ + + + E ++ + R N+ L+ M++
Sbjct: 674 SRINDIEDNLKKSRKALDDAKAN-RARLESTIEILRTRINELSDRINDINETLESMKKIK 732
Query: 323 KRLEEV 328
K + ++
Sbjct: 733 KAIGDL 738
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 34.2 bits (79), Expect = 0.18
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 222 ELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEV 281
+D L E KDDE +IK L EI + L K E L+++E E
Sbjct: 106 RVDNLKEEPFDKDDE------EIKALTREIKETFRELISLSKLFREQPALLSALEDIDEP 159
Query: 282 L--------TKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENE 333
+ ++ K E L E + +R +K LEL + E+ +L+ + +
Sbjct: 160 GRLADFVAASLQLKEKDELQEVL----ETVNIEKRLKKALELLKKELELLKLQNKITKKV 215
Query: 334 CERAGLLTKEKRK---DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDM 390
E+ + K +R+ E++K +K+E+G + LE+ K+ +++ E++
Sbjct: 216 EEK---MEKTQREYYLREQLKAIKKELG-------IEKDDKDELEKLKEKLEELKLPEEV 265
Query: 391 KDKLEVELDKLRM---ESAEKIKLR 412
K +E EL KL + S+E R
Sbjct: 266 KKVIEKELTKLSLLEPSSSEFTVTR 290
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 33.5 bits (77), Expect = 0.21
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 196 LLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKE 255
LL ENE + +E + + D L E+ K + + Q ++I QL EI K
Sbjct: 32 LLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKR 91
Query: 256 ESMKKLIKQNNELVERLNS----VEPRIEVLTKDIQIKTEKL-HKLAEEHEELIQTRR 308
E +++L + + L+S +E R + +Q + ++ KL H L + R
Sbjct: 92 ERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALHSLLAEKRS 149
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 34.1 bits (78), Expect = 0.21
Identities = 32/214 (14%), Positives = 98/214 (45%), Gaps = 12/214 (5%)
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHK 295
++ +++++ +S + + + Q E V LN + P++ +L + +++ +
Sbjct: 840 QLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLA--DRVEE 897
Query: 296 LAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKE 355
+ E +E + R + + +++ + VL+ + + L + + ++ ++
Sbjct: 898 IRERLDEAQEAARFIQ--QHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQ 955
Query: 356 EIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL---RMESAEKIKLR 412
+ +VQ R + Y +A+ + D+ +KL L++ R + E+++
Sbjct: 956 QAFALTEVVQRRAHFS-----YSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQH 1010
Query: 413 DSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAE 446
++L + ++V+A +K S + + +L+++L +
Sbjct: 1011 QAQLSQYNQVLASLKSSYDTKKELLNELQQELQD 1044
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 33.4 bits (77), Expect = 0.24
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 372 NMLEEYKQNAKDVVYYEDMK---DKLEVELDKLRMESAE-KIKLRDSELDKKHEVIAEMK 427
+L+ Y A+ ++ Y + K D+L+ +L+KL + A+ + KL + KK +AE++
Sbjct: 222 KLLDTYGDKAEFMLAYLNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELE 281
Query: 428 LSMEANNRRIQDLEEQLAE 446
+ + +RI + +E +A+
Sbjct: 282 QQLASLEKRIDEAKELIAK 300
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 32.0 bits (73), Expect = 0.25
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 38 QELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQ 97
+ + + K ++L+ L A+ ++ LRQQ Q+ EQ +E++K+E ++L+
Sbjct: 36 KAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95
Query: 98 EKYQRDL 104
L
Sbjct: 96 RWADTPL 102
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 32.7 bits (75), Expect = 0.27
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364
Q E + EL E++E++ L++ +E + E + L + +R +E+ R+K+ L
Sbjct: 72 QQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELD 131
Query: 365 QERDQLANMLEEYKQNAKD 383
+E +L L E KQ +
Sbjct: 132 EENRELREELAELKQENEA 150
Score = 31.1 bits (71), Expect = 0.77
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 86 LEKIKKEFKELQEKYQR---DLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSD 142
L ++++E ELQE+ L + + + L + L+ + E + RIK+L+++
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAE-LERLQKELARIKQLSAN 126
Query: 143 TSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELM 183
E+D+ E+ +L +ENE L + + E
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQENEQRRWF 167
Score = 30.4 bits (69), Expect = 1.7
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 241 ASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEH 300
++ +L E+A +E + +L +Q EL + ++ + L +++ ++L ++ +
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 301 EELIQTRRNEKKL--ELDEMREEIKRLE---EVLKENE 333
I+ ++L EL E+++E + LE E L+ENE
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENE 162
Score = 29.6 bits (67), Expect = 2.8
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 38 QELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKK---EFK 94
EL++ + + ++L EL + QE ++L+Q+ + ++ L +IK+
Sbjct: 69 PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAI 128
Query: 95 ELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTR 135
EL E+ + L ++ L +N L+ + E +N R
Sbjct: 129 ELDEENRE-LREELAE---LKQENEALEAENERLQENEQRR 165
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.6 bits (78), Expect = 0.28
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRD 67
K +E + EAE L +++E K +L E E +L E +++ + ++ AK + D+ +++
Sbjct: 535 KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK--KEADEIIKE 592
Query: 68 LRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLT 115
LRQ + L + +K + EK ++ ++ E L
Sbjct: 593 LRQLQKGGYASVK--AHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 33.4 bits (76), Expect = 0.28
Identities = 49/258 (18%), Positives = 111/258 (43%), Gaps = 19/258 (7%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
+E + L + + + ++ S+I+QL + + E ++L +Q+ E S+
Sbjct: 150 RERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERN 209
Query: 281 VLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELD------EMREEIKRLEEVLKENEC 334
L +++ +L ++ + L Q ++ ++ E+ L++ LK+
Sbjct: 210 ALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTI 269
Query: 335 ERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKL 394
+R T+ E ++L E++ + ++ Q A +L E ++ ++D
Sbjct: 270 QRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGE------ELASLGSLRDHT 323
Query: 395 EVELDKLRMESAE-KIKLRDSELDKKHEVI------AEMKLSMEANNRRIQDLEEQLAEN 447
EL + R+ESA+ ++L L K ++ S EA+ RIQ L +L +
Sbjct: 324 IAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKL 383
Query: 448 NAWINEQDLKIQEIQRTL 465
W+ E+ + ++++ L
Sbjct: 384 EEWLQEERSQREKLEVEL 401
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 33.5 bits (77), Expect = 0.32
Identities = 44/279 (15%), Positives = 99/279 (35%), Gaps = 13/279 (4%)
Query: 178 EVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNI-----NKELDRLNHEIIH 232
+ EL+++++ N + ++ + L EL I NK L +L +
Sbjct: 678 AIEELVEKLEDVLNEFKEQSEDIGYLEDAGELLRDFAPELEIKVERGNKILAKLFGRFLK 737
Query: 233 KDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEK 292
+ +++ L EI E+ +K ++++ + KD + K
Sbjct: 738 AFNALKKLYEFAYTLEEEIQYLEDLLKARLEKDYQSKYLDLIDNLNDAREIKDKESKAID 797
Query: 293 LHKLAEEHEELIQTRRNEKKL--ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
L + E E + + N + L ++ E + + E + ++K + I
Sbjct: 798 LDDIDFELELIGKQEINIDYILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLI 857
Query: 351 KRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDM--KDKLEVELDKLRMESAEK 408
+RL E I +Y+ + + L AK ++ ++ L E + A
Sbjct: 858 ERLIEAINQYRAKKLDTAEKLEELYIL---AKKEEEFKQFAEEEGLNEEELAFYDDLALN 914
Query: 409 IKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAEN 447
+ E +A+ + S+ N+ +E++
Sbjct: 915 GGKLPENGTELVEKLAK-EKSLREKNKDDWKAKEEVEAK 952
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 33.4 bits (77), Expect = 0.34
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 29 KNNQLLEFEQELRETMKQKDDKLLELAKTARTK-DQELRDLRQQTQQSVTKANTCEQHLE 87
K L E +QEL++ D E A+ R + L R + Q + CE ++
Sbjct: 1032 KRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
Query: 88 KIKKEFKELQEKYQ 101
+ K+ ++L+ Y
Sbjct: 1092 NLTKKLRKLERDYH 1105
>gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C.
Length = 537
Score = 33.1 bits (75), Expect = 0.35
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 295 KLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLK 354
A + + ++ NE D+M E + R E+L + E L ++ E+KR K
Sbjct: 10 HPANQPDLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRK 69
Query: 355 EEIGKYKML-VQERDQLANMLEEYKQNA--KDVVYYEDMKDKL 394
+I ++ L E D L L + N D V + DM L
Sbjct: 70 CDILAFRNLRCLELDHLNEFLFSTELNPPIGDQVRHHDMHAPL 112
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 33.1 bits (76), Expect = 0.38
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 235 DEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEV--------LTKDI 286
D +R +++K+L +A + L +N L +R S++ +I+ LTK+I
Sbjct: 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEI 118
Query: 287 QIKTEKLHKLAEEHEEL 303
+ + +L ++L
Sbjct: 119 EQLKSERQQLQGLIDQL 135
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 33.1 bits (76), Expect = 0.39
Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 205 KLCKELEKQVHEL-------NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEES 257
KL EL +Q++ N D L EI+ ++ + + + +Q +S
Sbjct: 79 KLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDS 138
Query: 258 MKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDE 317
+ +L +Q E +LN +E R +Q LA+ +Q K +DE
Sbjct: 139 LSQLPQQQTEARRQLNEIERR-------LQTLGTPNTPLAQAQLTALQAESAALKALVDE 191
Query: 318 M---------REEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKE---EIGKYKMLVQ 365
+ R+E+ RL L + ++ + R +R +E + ++L +
Sbjct: 192 LELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE 251
Query: 366 ERDQL-ANMLEEYKQN 380
+ L +++ ++K N
Sbjct: 252 QSGDLPKSIVAQFKIN 267
>gnl|CDD|221268 pfam11853, DUF3373, Protein of unknown function (DUF3373). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 472 to 574 amino acids in
length.
Length = 485
Score = 32.9 bits (75), Expect = 0.42
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKEL 139
Q +E +KKE EL+ + + + +T + L + +D+ + + L
Sbjct: 31 QKIEALKKELAELKAQLKDLQKRVDKTEKKSAGDRLTFGGDFRFRVDSLNYKTAAL 86
>gnl|CDD|110537 pfam01540, Lipoprotein_7, Adhesin lipoprotein. This family
consists of the p50 and variable adherence-associated
antigen (Vaa) adhesins from Mycoplasma hominis. M.
hominis is a mycoplasma associated with human urogenital
diseases, pneumonia, and septic arthritis. An adhesin is
a cell surface molecule that mediates adhesion to other
cells or to the surrounding surface or substrate. The
Vaa antigen is a 50-kDa surface lipoprotein that has
four tandem repetitive DNA sequences encoding a periodic
peptide structure, and is highly immunogenic in the
human host. p50 is also a 50-kDa lipoprotein, having
three repeats A,B and C, that may be a tetramer of
191-kDa in its native environment.
Length = 353
Score = 32.7 bits (74), Expect = 0.46
Identities = 71/328 (21%), Positives = 136/328 (41%), Gaps = 18/328 (5%)
Query: 158 EKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHEL 217
+KL+++N K D K+ + E +K+ +ETL KE K KE
Sbjct: 30 DKLAEKNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDYP 89
Query: 218 NINKEL----DRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLN 273
I +L + +E DD+ Q A ++ + ++I S E +KK+ + EL +
Sbjct: 90 AIISKLSAAVENAKNEKKAIDDKNAQIAKELAERNAKIQSNIEELKKINNEAFELSK--- 146
Query: 274 SVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREE---IKRLEEVLK 330
+V I + K +I + +L ++L+ R + +E + LE +
Sbjct: 147 TVNKTIAEVEKKFKIPKDFKEQLENFADDLLDKSRQIDEFTTVTSTQEGFTLAELESFKE 206
Query: 331 ENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDM 390
G+ ++ R + K EI V+E +L++ + E+ + K + +
Sbjct: 207 ITTTWFNGMKSEWARVLDAWKNELTEINSIIKGVEELKKLSHEISEFSNSVKKTISELEK 266
Query: 391 KDKLEVELDKLRMESAEKIK-----LRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLA 445
K K++ DK E A+K K D L+K HE+ + ++ + + +LE +
Sbjct: 267 KFKID---DKTNKEEAKKFKNELENFADQLLNKSHEIDKFVTVTSARGDFSLSELESFKS 323
Query: 446 ENNAWINEQDLKIQEIQRTLLEPIEPLS 473
N W NE + +Q + ++ +S
Sbjct: 324 FNTTWFNEMKSEWARVQEAWKDQLKEIS 351
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 33.0 bits (75), Expect = 0.47
Identities = 53/344 (15%), Positives = 130/344 (37%), Gaps = 3/344 (0%)
Query: 29 KNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEK 88
K + QE E+ K++ L + + + + +L++ + Q +
Sbjct: 674 KELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQD 733
Query: 89 IKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDK 148
E +L E+ ++ ++ E R + E K + + ++ E +K
Sbjct: 734 KINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEK 793
Query: 149 IVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCK 208
K E E + E E + +E Q + E +++ +++ L + E ++
Sbjct: 794 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 853
Query: 209 ELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNEL 268
E E + E I KE + ++ E ++ +++ + +++ +++ +++N L
Sbjct: 854 EEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLL 913
Query: 269 VERLNSVEPRIEVLTKDIQIK---TEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRL 325
E+ N +E RI + E+L + +E + + E++ + + L
Sbjct: 914 EEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEEL 973
Query: 326 EEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQ 369
V E + + + + +RL+EE + + E
Sbjct: 974 GNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETC 1017
Score = 30.7 bits (69), Expect = 2.5
Identities = 66/351 (18%), Positives = 150/351 (42%), Gaps = 3/351 (0%)
Query: 92 EFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVS 151
K +++ + L ++TE + L ELK+Q + + ++ + +
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 152 RKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELE 211
+ KL++E L +L+ E +E+ +E++K++ + +LKEN+ K K E
Sbjct: 227 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQE 286
Query: 212 KQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVER 271
+++ L +E + + + + K+K+ E+ E+ +KK ++ EL +
Sbjct: 287 EELKLLAKEEEELKSELLKLERRKVDDE--EKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 272 LNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKE 331
L +E + E ++ + + KL + EEL+ ++ E + + + + LE E
Sbjct: 345 LKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL-KNE 403
Query: 332 NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMK 391
E E LL +++++ +K K+E K ++E + ++ + + +K
Sbjct: 404 EEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLK 463
Query: 392 DKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEE 442
DKLE++ + ++ + +KL + E E+ R +
Sbjct: 464 DKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLL 514
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 32.5 bits (74), Expect = 0.48
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 15/173 (8%)
Query: 281 VLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
L + +Q +KL +L E+ EE+ K+ ++ + LEE + E A L
Sbjct: 93 ELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALS 152
Query: 341 TKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELD- 399
+ ++ + R + ++L Q+ + E+ K +A D K + L
Sbjct: 153 REVGKQRGLLSRGLATFKRDRILQQQWRE-----EQEKYDAAD-------KARAIYALQT 200
Query: 400 KLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWIN 452
K + E + S+ D + +AE + +E RI++ ++ E +N
Sbjct: 201 KADERNLETVLQSLSQADFQLAGVAEKE--LETVEARIKEARYEIEELENKLN 251
>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam
family represents a conserved domain, which is sometimes
repeated, in an anion-transporting ATPase. The ATPase is
involved in the removal of arsenate, antimonite, and
arsenate from the cell.
Length = 304
Score = 32.3 bits (74), Expect = 0.50
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 314 ELDEMREEIKRLEEVLKENECERAGLLTK-EKRKDEEIKRLKEEIGKYKMLVQ 365
L+E +E+I++ E+L + E L+ EK E +R +E+ KY + V
Sbjct: 187 SLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD 239
>gnl|CDD|147874 pfam05957, DUF883, Bacterial protein of unknown function (DUF883).
This family consists of several hypothetical bacterial
proteins of unknown function.
Length = 94
Score = 30.2 bits (69), Expect = 0.59
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 316 DEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLE 375
D++R + LEE+L+ EE + L+E L R++L + +
Sbjct: 5 DDLRSLLDDLEELLRS----------AADLAGEEAEELRERAEA--ALDDARERLGDAAD 52
Query: 376 EYKQNAKDVV 385
+ A+D
Sbjct: 53 AAAERARDAA 62
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 31.7 bits (72), Expect = 0.69
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHEL-----NINKELDRLNHEII 231
+E+ E++K + I+ + E+ K KE +K++ EL +EL +++ +I
Sbjct: 4 KEIRNKTDELEKLKDEIKAEEEALESEEKHLKEYDKEMEELLEEKMQHVEELRQIHADIN 63
Query: 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQI 288
+ EI+Q+ S++++ M +IA L + NE+ + +E ++ ++ Q
Sbjct: 64 DMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLEELPQLHEEERQK 120
Score = 30.2 bits (68), Expect = 1.9
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 181 ELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQN 240
E +KE+ K + +E L E +A + + EK + E + KE++ L E + +E+RQ
Sbjct: 1 EGIKEIRNKTDELEKLKDEIKAEEEALESEEKHLKEYD--KEMEELLEEKMQHVEELRQI 58
Query: 241 ASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEH 300
+ I + +EI + +++ + + + N ++ I + K L +L + H
Sbjct: 59 HADINDMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELG----LEELPQLH 114
Query: 301 EELIQT 306
EE Q
Sbjct: 115 EEERQK 120
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.1 bits (73), Expect = 0.69
Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 3 LLENL--KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART 60
L+E L KE K E L+K+ E +L + +EL+E ++ +K LEL K A+
Sbjct: 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE---RERNKKLELEKEAQ- 571
Query: 61 KDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQE-------------KYQRDLNQK 107
+ L+ L+++ + + + + H K K ++L + +Q D
Sbjct: 572 --EALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGD 629
Query: 108 TETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKL 167
IR K +++ + N + SE++KI + K+ K +
Sbjct: 630 KVRIRYFGQKGKIVQILGGNKW-NVTVGGMRMKVHGSELEKINKAPPPKKFKVPKTTKPE 688
Query: 168 SMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCK-----ELEKQVHEL 217
+ + + +D+ + ++ L V + +L K V EL
Sbjct: 689 PKEASLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQEL 743
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 32.3 bits (74), Expect = 0.71
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 86 LEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSE 145
+EKIK E+ EL+ +L KT+ E K +E + + D +I+EL ++ E
Sbjct: 24 VEKIKAEYPELEALSNDELRAKTD----------EFKQYIKEAVADIDAKIEELKAEAIE 73
Query: 146 IDKIVSRKD--AEIEKLSKE 163
I R+D A+I+KL KE
Sbjct: 74 SLDIDEREDIYAQIDKLEKE 93
Score = 31.1 bits (71), Expect = 1.6
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 243 KIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEE 302
+I+ ++ +I ++ ++ L N+EL + + + I+ DI K E+L AE E
Sbjct: 19 EIQPIVEKIKAEYPELEAL--SNDELRAKTDEFKQYIKEAVADIDAKIEELK--AEAIES 74
Query: 303 LIQTRRNEKKLELDEMREEI-KRLEEVLKE 331
L R + ++D++ +E + LE+VL E
Sbjct: 75 LDIDEREDIYAQIDKLEKEAYEILEKVLDE 104
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.3 bits (74), Expect = 0.74
Identities = 29/187 (15%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 296 LAEEHEELIQTRRNEKKLELDEMR---------EEIKRLEEVLKENECERAGLLTKEKRK 346
L +E E + +K+ EL++++ E++ + EE L+E E + KE+R
Sbjct: 1099 LTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRL 1158
Query: 347 DEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESA 406
+ K ++ K K+ +E+ + + + + A V + + + +LD
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKS-SADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Query: 407 EKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLL 466
D E D++ + +++ +R++ + ++++ +E +
Sbjct: 1218 SNSSGSDQEDDEEQK-----TKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPK 1272
Query: 467 EPIEPLS 473
+ +S
Sbjct: 1273 NAPKRVS 1279
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 31.8 bits (73), Expect = 0.90
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 301 EELIQTRRNEKKL--ELDEMREEIKRLEEVLKEN---------ECERAGLLTKEKRKDEE 349
E+L ++R+ +L +L+EMRE L LK+N E E+A E+ + E
Sbjct: 78 EQLEESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKA-----EEARQEA 132
Query: 350 IKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYED 389
++LK EI + + E +Q +++L + + D+VYY +
Sbjct: 133 FEQLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRN 172
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 31.6 bits (72), Expect = 0.97
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 272 LNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKE 331
L + + L K+++ TE KLAE EE + + K E+D++ EI RLEE+L E
Sbjct: 1 LKELREALAELAKELRKLTED-EKLAEAEEE--KAEYDALKEEIDKLDAEIDRLEELLDE 57
Query: 332 NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANM 373
E + A ++EE + E L D LA
Sbjct: 58 LEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEE 99
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 31.6 bits (73), Expect = 1.1
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337
++ +L ++ + E +E I+ + LE+ EE E
Sbjct: 744 KLPLL---LKGADAEDRARLEANEAYIKRLARLESLEILADDEEAPEGAASAVVGGAELF 800
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANML--EEYKQNA-KDVVY-------- 386
L + E+ RL++E+ K + +E +++ L E + A ++VV
Sbjct: 801 LPLEGLIDVEAELARLEKELAKLE---KEIERVEKKLSNEGFVAKAPEEVVEKEREKLAE 857
Query: 387 YEDMKDKLEVELDKLR 402
YE+ KL+ L +L+
Sbjct: 858 YEEKLAKLKERLARLK 873
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2. In many but not
all taxa, there is a conserved real translational
frameshift at a TGA codon. RF-2 helps terminate
translation at TGA codons and can therefore regulate its
own production by readthrough when RF-2 is insufficient.
There is a PFAM model called "RF-1" for the superfamily
of RF-1, RF-2, mitochondrial, RF-H, etc [Protein
synthesis, Translation factors].
Length = 364
Score = 31.3 bits (71), Expect = 1.2
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 310 EKKLELDEMREEIKRLEEVLKE----NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQ 365
L+ ++ + ++ LE+ +++ N+ ERA + KE+ L+ + + L
Sbjct: 20 RGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKER------SSLEAVLDTLEELKN 73
Query: 366 ERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR--MESAEKIKLRDSELDKKHEVI 423
+ L+ L E D E+ ++L+ EL L + E + E D + +
Sbjct: 74 SLEDLS-ELLELAVEEDD----EETFNELDAELKALEKKLAELELRTMLSGEYDANNAYL 128
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 31.4 bits (72), Expect = 1.2
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 30/165 (18%)
Query: 297 AEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE 356
A + +T + L+ + E K+ E E + E + K +E+ L++E
Sbjct: 79 ALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDE 138
Query: 357 IGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSEL 416
+ +L N+LE+ + V +L +L+ S L
Sbjct: 139 L----------KELKNLLEDQLSGLRQVERIPPEFAELY-------------KRLKRSGL 175
Query: 417 DKKH------EVIAEMKLSMEANNRRIQD-LEEQLAENNAWINEQ 454
+ ++ M R + + L + I +Q
Sbjct: 176 SPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQ 220
Score = 30.2 bits (69), Expect = 2.3
Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 26/188 (13%)
Query: 239 QNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAE 298
+ ++ I S + ++K + N L + E K + +
Sbjct: 62 VLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEW------KKELEKPSEPK 115
Query: 299 EHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIG 358
E E + ELDE+R+E+K L+ LL + +++R+ E
Sbjct: 116 EEEPKAAAESKVVQKELDELRDELKELKN-----------LLEDQLSGLRQVERIPPEFA 164
Query: 359 K-YKMLVQERDQLANMLEEY-KQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSEL 416
+ YK L + + + E ++ K ++ E M + L A I +R ++
Sbjct: 165 ELYKRLKR-----SGLSPEIAEKLLKLLL--EHMPPRERTAWRYLLELLANMIPVRVEDI 217
Query: 417 DKKHEVIA 424
K+ V+A
Sbjct: 218 LKQGGVVA 225
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 31.1 bits (71), Expect = 1.4
Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 218 NINKELDRLNHEIIHKDDEIRQNASKI---KQLMSEIASKEESMKKL-----------IK 263
+ +L+ + +I + E+ +++ +Q + I+ + E+ +KL ++
Sbjct: 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLE 200
Query: 264 QNNELVER---LNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMRE 320
E E L +E +EVL + I + ++ + E + E + L E+RE
Sbjct: 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRE 260
Query: 321 EIKRLEEVLKENE 333
+ + + L+
Sbjct: 261 RLNKARDRLQRLI 273
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 31.1 bits (71), Expect = 1.5
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 87 EKIKKEFKELQEK---YQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDT 143
EKI+KE KEL+++ ++ L + + + + LE+K ++ +E R T I E D
Sbjct: 437 EKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDE---RRTEIVEEEEDE 493
Query: 144 SEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTEL-MKEVD 187
E + +++ +D + LS + + L E Q V+ L +KE D
Sbjct: 494 IEDEDLIAEEDVVV-TLSHKGYIKRVPLKGYEAQRVSGLGLKEGD 537
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 30.9 bits (71), Expect = 1.6
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLEL 315
E ++ +I+ EL E + D ++K K+ +LA E L + + +K E
Sbjct: 201 EEIQPVIEAIEELAEEAGKEKWEFVAPEVDEELK-AKVKELAYE-AGLKEAYQITEKQER 258
Query: 316 DEMREEIK-RLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357
+ IK + E L E E E +EK E K L+++I
Sbjct: 259 YAALDAIKEEVLEALAEEE-EEEEEADREKEIKEAFKDLEKKI 300
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 30.6 bits (70), Expect = 1.6
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 265 NNELVERLNSVEPRIEVLTK-----DIQIKTEKLHKLAEEH---EELIQTRRNEKKLELD 316
L+E+L S+ R E L ++ ++ KL++E+ E +++ R KK +
Sbjct: 2 KPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQ-- 59
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKY 360
E+++ +E+L E + + +E EIK L+ +I +
Sbjct: 60 ---EDLEDAKEMLAEEKDPEMREMAEE-----EIKELEAKIEEL 95
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 30.9 bits (70), Expect = 1.7
Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 36/278 (12%)
Query: 207 CKELEKQVHELNI-NKELDRLNHEIIHKDDEI---RQNASKIKQLMSEIASKEESMKKLI 262
C+ELEK++ EL N EL L E DEI R+++ K K+L +++ E+ KK +
Sbjct: 269 CEELEKELAELQHRNDELTSLAAESQALKDEIDVLRESSDKAKKLEAQV----ETYKKKL 324
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322
+ N+L ++ +E R + + EEL + N + +L+ + ++
Sbjct: 325 EDLNDLRRQVKLLEER----------NAMYMQNTVQLEEEL--KKANAARGQLETYKRQV 372
Query: 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYK---- 378
+ L L E + L + KR +E+++ L++E + L+ ERD L EE +
Sbjct: 373 QELHAKLSEESKKADKLEFEYKRLEEKLEALQKE---KERLLAERDSLRETNEELRCGQA 429
Query: 379 -------QNAKDVVYYEDM-KDKLEVEL-DKLRMESAEKIKLRDSELDKKHEVIAEMKLS 429
+A +++ + L E +KL E LR + ++E I E++
Sbjct: 430 QQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRLQHENKMLRLGQEGSENERITELQQL 489
Query: 430 MEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
+E NRR +LE QL N I E +++++Q+ L E
Sbjct: 490 LEDANRRNNELETQLRLANQRILELQQQVEDLQKALQE 527
Score = 29.8 bits (67), Expect = 3.6
Identities = 67/324 (20%), Positives = 139/324 (42%), Gaps = 25/324 (7%)
Query: 53 ELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIR 112
EL K + Q L ++Q Q+ K + + +K++ E+K L+EK + +K +
Sbjct: 354 ELKKANAARGQ-LETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLA 412
Query: 113 ---SLTNKNLELK---VQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEK 166
SL N EL+ Q ++ + +E+ R+ ++ +L EN+
Sbjct: 413 ERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAELLPSEYRE--KLIRLQHENKM 470
Query: 167 LSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRL 226
L + EN+ +TEL + ++ + L + + EL++QV ++L +
Sbjct: 471 LRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILELQQQV------EDLQKA 524
Query: 227 NHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI 286
E K ++ SK+ EE +++L + N EL ++ +E +++
Sbjct: 525 LQEQGSKSEDSSLLKSKL----------EEHLEQLHEANEELQKKREQIEELEPDQDQNL 574
Query: 287 QIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRK 346
K +L ++ +E ++ K +++ RE IK L+ E L + +
Sbjct: 575 SRKIAELEAALQKKDEDMRAMEERYKKYVEKAREVIKTLDPKQNPASPEIQLLKKQLTER 634
Query: 347 DEEIKRLKEEIGKYKMLVQERDQL 370
D+ I+ L+ E K K + ++ ++L
Sbjct: 635 DKRIRHLESEYEKAKPMREQEEKL 658
Score = 29.4 bits (66), Expect = 6.0
Identities = 66/322 (20%), Positives = 138/322 (42%), Gaps = 50/322 (15%)
Query: 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRD 67
+ +E H K+SE ++E++ +L +E E ++++ ++LL + R ++ELR
Sbjct: 371 QVQELHAKLSEESKKADKLEFEYKRL----EEKLEALQKEKERLLAERDSLRETNEELRC 426
Query: 68 LR-QQTQQSVTKANTCEQH---------------LEKIKKEFKELQEKYQRDLNQKTETI 111
+ QQ Q + A T L +++ E K L+ + N++ +
Sbjct: 427 GQAQQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRLQHENKMLRLGQEGSENERITEL 486
Query: 112 RSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDL 171
+ L + E ++ + RI EL ++ K + + ++ E S KL L
Sbjct: 487 QQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHL 546
Query: 172 VFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEII 231
+++ E +E+ KK IE L + + N+++++ L +
Sbjct: 547 -----EQLHEANEELQKKREQIEEL---------------EPDQDQNLSRKIAELEAALQ 586
Query: 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTE 291
KD+++R + K+ + E +++IK L + N P I++L K + + +
Sbjct: 587 KKDEDMRAMEERYKKYV-------EKAREVIKT---LDPKQNPASPEIQLLKKQLTERDK 636
Query: 292 KLHKLAEEHEELIQTRRNEKKL 313
++ L E+E+ R E+KL
Sbjct: 637 RIRHLESEYEKAKPMREQEEKL 658
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.7 bits (70), Expect = 1.7
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDI--QIKTEKLHKLAEEHEELIQTRRNEKKL 313
E +K+L ++ EL E L ++ ++ L K Q+ EK +L + E +
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSE----- 388
Query: 314 ELDEMREEIKRLEEVLKENECE 335
EL+E+ EE+K L+E L+ E
Sbjct: 389 ELEELEEELKELKEELESLYSE 410
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 30.4 bits (69), Expect = 1.9
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 208 KELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNE 267
KEL V +L +E + I+ E+ Q A Q E + +L+ N
Sbjct: 185 KELVAGVAKLL--EEEPEVIDPILDAIGELVQEAEAALQ-----TGDFEELGELMNINQG 237
Query: 268 LVERLNSVEPRIEVL 282
L++ L P ++ L
Sbjct: 238 LLKALGVSTPELDEL 252
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.4 bits (69), Expect = 2.2
Identities = 49/252 (19%), Positives = 98/252 (38%), Gaps = 29/252 (11%)
Query: 125 YEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMK 184
EE +D + L + V++ + K+ + + +E E
Sbjct: 43 GEELVDYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKAT 102
Query: 185 EVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNA--- 241
V + +++ + EA +L +EL K+ + +EL + +++I E
Sbjct: 103 SVAAEATTPKSIQELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLE 162
Query: 242 -------SKIKQLMSEIAS-----KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK 289
++ QL ++A +EE + L ++ EL+ +L + L
Sbjct: 163 SLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEEL--LARLESKEAAL 220
Query: 290 TEKL-HKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEV----LKENECERAGLLTKEK 344
++L + E EEL KK E +++R+E++R E LK +A L +E
Sbjct: 221 EKQLRLEFEREKEEL------RKKYE-EKLRQELERQAEAHEQKLKNELALQAIELQREF 273
Query: 345 RKDEEIKRLKEE 356
K+ + K +E
Sbjct: 274 NKEIKEKVEEER 285
Score = 28.5 bits (64), Expect = 9.4
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 17 SEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSV 76
+ E L+ + + +QL + EL+ +++ ++ L+ + E L + +
Sbjct: 159 DDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESK-- 216
Query: 77 TKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNL---------ELKVQYEE 127
+A +Q + ++E +EL++KY+ L Q+ E + L EL+ ++ +
Sbjct: 217 -EAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNK 275
Query: 128 EIDN-----RDTRIK---ELTSDTSEIDKIV-SRKDAEIEKLSK 162
EI R+ R+ EL S ++K + SR +AE E
Sbjct: 276 EIKEKVEEERNGRLAKLAELNSRLKGLEKALDSRSEAEDENHKV 319
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 30.8 bits (70), Expect = 2.2
Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 302 ELIQTRRNEKKLELDEMREEIKRLEEVLKENECER-----------AGLLTKEKRKDEEI 350
EL+Q+RR E ++ ++ L+E + E A L+ +E ++++
Sbjct: 11 ELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQL 70
Query: 351 K-RLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKI 409
L ++ + L + QLAN+L + Q+++ + + L L R+ +
Sbjct: 71 SQALNQQTERLNALASDDRQLANLLLQLLQSSRTI---REQIAVLRGSLLLSRILLQQLG 127
Query: 410 KLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
L ++ ++ + + + +++A I LE Q + A + + +I + +R LL
Sbjct: 128 PLPEAGQPQEQFEVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELLN 185
>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association
with cap-binding complex [RNA processing and
modification].
Length = 258
Score = 30.3 bits (68), Expect = 2.3
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 67 DLRQQTQQSVTKANTCEQHLEKIKKEF----KELQEKYQRDLNQKTETIRSLTNKNLELK 122
DL + T++S+ K T H EK K E+ +E E+Y+ + + I N +
Sbjct: 45 DLFRNTKRSLGKCPT--SHEEKYKAEYERNGRERAEEYEWEYLRLLVRIVLSCNDGIRAA 102
Query: 123 VQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTEL 182
+ +IKE + +D+ + E + L+K F E + + E
Sbjct: 103 GLEDRTTPEEFGKIKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREE 162
Query: 183 MKEVDKK 189
KE+ +
Sbjct: 163 RKEIKEA 169
>gnl|CDD|235602 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
Length = 670
Score = 30.3 bits (69), Expect = 2.4
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 306 TRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI-KRLKEEIGKYKMLV 364
TR E+KLE +R EEV++E + LL + K+ +EI + L + +G K +
Sbjct: 540 TRDFEEKLE--MIRTGKATREEVIEEAKETLNKLLEEFKKNKDEIGEELAKALGLIKPVG 597
Query: 365 Q----ERDQLANMLEEYKQNAKD--VVYYEDMKDKLEVELDK 400
+ R+ + L +Y AK V YE+ K++ + +
Sbjct: 598 KCKICGREAYKDGLCKYHYEAKKRLVKAYEEWKERTGYDHKE 639
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 30.4 bits (69), Expect = 2.6
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 240 NASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEE 299
N ++K + +IA+KE+S+++ +Q L+ +L E + I + KL +
Sbjct: 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQE-------EAISQASRKLRE---- 93
Query: 300 HEELIQTRRNEKKLELDEMREEIKRLEEVLKENE 333
Q N+ ++DE+ I +LE+ E
Sbjct: 94 ----TQNTLNQLNKQIDELNASIAKLEQQQAAQE 123
>gnl|CDD|219004 pfam06386, GvpL_GvpF, Gas vesicle synthesis protein GvpL/GvpF.
This family consists of several bacterial and archaeal
gas vesicle synthesis protein (GvpL/GvpF) sequences. The
exact function of this family is unknown.
Length = 246
Score = 30.0 bits (68), Expect = 2.7
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 251 IASKEESMKKLIKQN-NELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN 309
+ EES+++L+ + +E E L+++E R+E K + L ++ EE EL R
Sbjct: 82 VFKDEESVRELLAERYDEFREALDALEGRVEWGVKVYWDEDAILKEVVEEDPELRALRAE 141
Query: 310 EKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERD 368
+ + RL ++++E +R+ E + + E + + V+ D
Sbjct: 142 IESAPEGKAYLLRIRLGQLIEEA---------LRERRQELAEDILEALSPLAVEVRVND 191
>gnl|CDD|189016 cd09609, M3B_PepF_4, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 586
Score = 30.3 bits (69), Expect = 2.7
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 11/149 (7%)
Query: 163 ENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKE 222
+ +FK + +K++ + + K + + E+
Sbjct: 6 VELTWDLTDLFKTEEAFEAALKKLKELAKDFKKKYKGKLTDAETILSALDDYEEILEL-- 63
Query: 223 LDRLNH------EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVE 276
+ RL+H D E + A+K L ++I +K + + +E + L V
Sbjct: 64 ISRLSHYASLPQSTDGTDPENQARAAKFDSLAAKINAKLSFFESELLALDE--KILEEVI 121
Query: 277 PRIEVLTKDI-QIKTEKLHKLAEEHEELI 304
+ + + +K H L+ E EE +
Sbjct: 122 EELPEYAAYLEDLLRKKPHTLSPEVEEAL 150
Score = 29.1 bits (66), Expect = 6.2
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 83 EQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRI---KEL 139
E L+K+K+ K+ ++KY+ L + +L Y EEI +R+ L
Sbjct: 23 EAALKKLKELAKDFKKKYKGKLTDAETILSALD--------DY-EEILELISRLSHYASL 73
Query: 140 TSDTSEIDKIVSRKDAEIE-KLSKENEKLSM---DLVFKENQEVTELMKEVDKKDNYIET 195
T D + A+ + +K N KLS +L+ + + + E+++E+ + Y+E
Sbjct: 74 PQSTDGTDPENQARAAKFDSLAAKINAKLSFFESELLALDEKILEEVIEELPEYAAYLED 133
Query: 196 LLKENEANVKLCKELEKQVHELN 218
LL++ L E+E+ + L+
Sbjct: 134 LLRKKPH--TLSPEVEEALAALS 154
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 30.6 bits (69), Expect = 2.7
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 354 KEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRD 413
+ + ++++ + ++A + V ED + + + D L+ S K +
Sbjct: 43 SLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESIS 102
Query: 414 SELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENN 448
+++D + + KL +E N R +++EE LAE N
Sbjct: 103 TDMDGIDDDSLDRKLKLERENLRKREIEE-LAEEN 136
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 30.2 bits (69), Expect = 2.8
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 120 ELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKL 167
E EE + +I++L +++ + + E+E+L E EKL
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
Score = 28.6 bits (65), Expect = 9.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 365 QERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRME 404
++ + + E+ +Q + E +KLE EL++L+ E
Sbjct: 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSE 44
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 30.1 bits (68), Expect = 3.1
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 277 PRIEVLTKDIQIKTEKLHKLAEEHEELIQTRR---NEKKLELDEMREEIKRLEEVLKENE 333
R ++L++++Q K +++AEE ++T R E+ E +E ++ ++ K
Sbjct: 323 KRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEG-EASRFKEALEETLQLNKRKA 381
Query: 334 CERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQE--RDQLANML---EEYKQNAKDVVY-Y 387
AG L I+ L G +L + L + L E+ + + + Y Y
Sbjct: 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVY 441
Query: 388 EDM 390
M
Sbjct: 442 SGM 444
>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB. FeoB (773 amino
acids in E. coli), a cytoplasmic membrane protein
required for iron(II) update, is encoded in an operon
with FeoA (75 amino acids), which is also required, and
is regulated by Fur. There appear to be two copies in
Archaeoglobus fulgidus and Clostridium acetobutylicum
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 591
Score = 30.1 bits (68), Expect = 3.4
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 321 EIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQN 380
+ ++LEE L E R E RLK+ I K L + + + ++ E Q
Sbjct: 120 DEEKLEERLG---VPVVPTSATEGRGIE---RLKDAIRKAIGLKELKKRAIEIVPEAYQV 173
Query: 381 AKDVVYYEDMKDKL-EVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNR---R 436
+ V ++ + + L+ L + E++K +AE+ + +N
Sbjct: 174 VEVVEGLIEIIYSISKRGLEILLGLLEDLSL----EIEKIERNLAEVVIKESPSNLSPTE 229
Query: 437 IQDLEEQLAE 446
I D + L E
Sbjct: 230 IADEDRVLVE 239
>gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL;
Provisional.
Length = 749
Score = 29.9 bits (67), Expect = 3.5
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 28 YKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANT---CEQ 84
Y +N LE+E + E +K+ + E+ + + Q++ L + + VT+A + +
Sbjct: 46 YIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQT 105
Query: 85 HLEKIKKEFKELQE 98
E I KE + ++E
Sbjct: 106 SREAIAKELERIKE 119
>gnl|CDD|173430 PTZ00140, PTZ00140, sexual stage antigen s45/48; Provisional.
Length = 447
Score = 29.8 bits (67), Expect = 3.6
Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 20/193 (10%)
Query: 78 KANTCEQHLEKIKKEFKELQE-KYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRI 136
+ E+ +E + + EL E + D K TI K+ + + DN T
Sbjct: 106 ENERTEKDIENLGLDEYELSENRTFNDFTLKILTIPPFYKKDKTIYCR----CDNSKTVK 161
Query: 137 KELTSDTSEIDKIVSRKDA--EIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
+KIV K +I L ++ S++L + + + ++ D N ++
Sbjct: 162 SI------PGEKIVKGKVGLVKINVLKYPHKITSINLTKEPFTYLPDTYEKSDFVSNGLD 215
Query: 195 TLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK 254
LK+ E +V + + + ++ + L +HK+ I + + S
Sbjct: 216 LELKDKELDVLAFEFKDNKCFKIGKCENLYNSKKGFLHKNLLIFKAPAYFL-------SN 268
Query: 255 EESMKKLIKQNNE 267
+ + K NN
Sbjct: 269 DVCTECSCKVNNT 281
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 29.3 bits (66), Expect = 3.6
Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 25/150 (16%)
Query: 204 VKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIK 263
+K + + + EL L ++ +E+ +I +L SE+ +E ++ L +
Sbjct: 62 LKAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRE 121
Query: 264 QNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIK 323
L ERL S+E E + +LA+E EL Q ++REE++
Sbjct: 122 LLKSLEERLESLE--------------ESIKELAKELRELRQ-----------DLREEVE 156
Query: 324 RLEEVLKENECERAGLLTKEKRKDEEIKRL 353
L E L+ + L + +++L
Sbjct: 157 ELREELERLQENLQRLQEAIQELQSLLEQL 186
Score = 29.0 bits (65), Expect = 4.1
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 291 EKLHKLAEEHEELI--QTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDE 348
+ KL E EL + + +E + EL+++ E I LE L++ + + L K +E
Sbjct: 69 VRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEE 128
Query: 349 EIKRLKEEIGKY-----KMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKL 401
++ L+E I + ++ R+++ + EE ++ +++ ++ +L+ L++L
Sbjct: 129 RLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186
Score = 27.8 bits (62), Expect = 9.8
Identities = 21/108 (19%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 24 KQIEYKNNQLLEFEQELRETMKQKDD---KLLELAKTARTKDQELRDLRQQTQQSVTKAN 80
+++E +L E +Q+L E ++ +D ++ EL ++L+ LR+ + +
Sbjct: 72 QKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLE 131
Query: 81 TCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEE 128
+ E+ ++++ KE +EL++ + ++ + E + L L+ +E
Sbjct: 132 SLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQEL 179
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 29.7 bits (67), Expect = 3.6
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 191 NYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDD----EIRQNASKIKQ 246
N + +LK +L K E +I + LD++ H +K D +IR+ + Q
Sbjct: 439 NTVMEILKPGRPQ----PDLPKDAGEASIAR-LDKIRH---NKGDISTAQIRKRMQRTMQ 490
Query: 247 LMSEIASKEESMKKLIKQNNELVERLNSVEP 277
+ + ES+++ +++ E+ V+
Sbjct: 491 KHAAVFRIGESLQEGVEKIKEIYSDFKDVKI 521
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 29.7 bits (68), Expect = 3.7
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 30/114 (26%)
Query: 237 IRQNASKIKQ---------LMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI- 286
IR+N +K+ + E+ +E ++L + EL N+ L+K+I
Sbjct: 7 IRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNA-------LSKEIG 59
Query: 287 QIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
Q K + E+ E LI E+ E++EEIK LE L E E E LL
Sbjct: 60 QAKRKG-----EDAEALIA--------EVKELKEEIKALEAELDELEAELEELL 100
Score = 29.3 bits (67), Expect = 5.0
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 361 KMLVQERDQLANMLE--EYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDK 418
K++ + + + L + + +++ ++ + +L+ EL++L+ E K + +
Sbjct: 5 KLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEI-GQAKR 63
Query: 419 KHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINE 453
K E + ++ I+ LE +L E A + E
Sbjct: 64 KGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
Score = 28.9 bits (66), Expect = 6.9
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 196 LLKENEANVKLCKELEKQVHELNINK--ELDRLNHEIIHKDDEIRQNASKIKQLMSEIAS 253
L++EN VK + L K+ L++++ ELD E+ + +E++ + + + + +
Sbjct: 6 LIRENPEAVK--EALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKR 63
Query: 254 KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
K E + LI + EL E + ++E ++ L +++
Sbjct: 64 KGEDAEALIAEVKELKEEIKALEAELDELEAELE 97
>gnl|CDD|237292 PRK13182, racA, polar chromosome segregation protein; Reviewed.
Length = 175
Score = 29.2 bits (66), Expect = 3.7
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 214 VHELNINKELDRLNHEIIHKDD-----EIR---QNASKIKQLMSEIASKEESMKKLIKQN 265
V +LN+ E + H I ++D ++ + ++ ++ E +
Sbjct: 21 VKQLNLPCEKNEYGHYIFTEEDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQ 80
Query: 266 NELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEE--HEELIQTRRNEKKLELDEMREEIK 323
N +E ++ +T+ + +L + A++ +L+Q RR E++EM E ++
Sbjct: 81 NISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRR-----EMEEMLERLQ 135
Query: 324 RLEEVLKENE 333
+LE LK+ E
Sbjct: 136 KLEARLKKLE 145
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.5 bits (67), Expect = 3.7
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 250 EIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN 309
+ E + L+ LV++L +++ L+ ++ K +K + E E++++
Sbjct: 226 KSKEDLEDLLPLLNLVLYLVDKLANLK-----LSPEVLRKVDKTREEEE--EKILKAAEE 278
Query: 310 EKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE 356
E++ E E +EE K+ E E + A L +E+RK EE +R K+
Sbjct: 279 ERQEEAQEKKEEKKKEER-----EAKLAKLSPEEQRKLEEKERKKQA 320
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 30.0 bits (68), Expect = 3.8
Identities = 63/319 (19%), Positives = 137/319 (42%), Gaps = 20/319 (6%)
Query: 16 ISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQS 75
+ EAE V + +QL +E + +++++ + L R + +L LR+Q ++
Sbjct: 224 LEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEE 283
Query: 76 VTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTR 135
E+ L K E ++ + K++ + + E + ELK + ++I +
Sbjct: 284 SEAKAELERQLSKANAEIQQWRSKFESEGALRAEELE-------ELKKKLNQKISELEEA 336
Query: 136 IKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKE------NQEVTELMKEVDKK 189
+ + ++K SR +E+E L E E+ + E ++ + E ++VD+
Sbjct: 337 AEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDEL 396
Query: 190 DNYIETLLKENEA----NVKLCKELEKQVHELN-INKELDRLNHEIIHKDDEIRQNASKI 244
++T +E +L ELE+ ++ + +E L EI D++ + +
Sbjct: 397 QAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNV 456
Query: 245 KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI-QIKTEKLHKLAEEHEEL 303
+L E +L E L E ++ ++ QI++E +LAE+ EE
Sbjct: 457 HELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEF 516
Query: 304 IQTRRNEKKLELDEMREEI 322
TR+N ++ ++ ++ +
Sbjct: 517 ENTRKNHQR-AIESLQATL 534
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 30.1 bits (68), Expect = 3.8
Identities = 56/339 (16%), Positives = 121/339 (35%), Gaps = 29/339 (8%)
Query: 8 KFKEWHTKISEAELLVKQIEYKNNQLLEFEQELR--ETMKQKDDKLLELA---KTARTKD 62
+ +E K + LVK ++ +L +ELR E KQ+ ++L L + +
Sbjct: 165 EIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALE 224
Query: 63 QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQ---EKYQRDLNQKTETIRSLT-NKN 118
Q+L L + + E+ + E + + E L + ++ ++
Sbjct: 225 QQLAALGEVIDLPPDAV----ERYEEARAELRAARRNLELLTERLEALQAELDEISLDEE 280
Query: 119 LELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSK-------ENEKLSMDL 171
L + E + + + D + + ++ L E S+
Sbjct: 281 LLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAVESLRP 340
Query: 172 VFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEII 231
+ VTEL K + D +++ E + K++ Q+ L +
Sbjct: 341 SLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTV-PEPLRAAL 399
Query: 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTE 291
+ + L E+A + ++ + + RL +E L E
Sbjct: 400 ADALRAGDIDAALAALEQEVAVAK-------RELAQALSRLGLWRGDLEELVALPVPSAE 452
Query: 292 KLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLK 330
++ +E EE++Q +R ++ L E+ E+++ LE L+
Sbjct: 453 QVQAFLKEAEEIMQAKRQKRD-RLLELEEDLETLELQLR 490
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 29.8 bits (67), Expect = 4.2
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 25 QIEYKNNQLLEFEQELRETMKQK----DDKLLELAKTART-KDQELRD--LRQQTQQSVT 77
++E + L +++Q L + KQ+ + A +A+ KDQ+ R+ LR QTQ
Sbjct: 504 KVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRK 563
Query: 78 KANTCEQHLEKIKKEFKELQEK 99
+ E+ +EK+ + + +EK
Sbjct: 564 EIARLEKEMEKLNAQLAQAEEK 585
>gnl|CDD|188994 cd06455, M3A_TOP, Peptidase M3 Thimet oligopeptidase (TOP) also
includes neurolysin. Peptidase M3 Thimet oligopeptidase
(TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase
24.15; soluble metallo-endopeptidase; EC 3.4.24.15)
family also includes neurolysin (endopeptidase 24.16,
microsomal endopeptidase, mitochondrial oligopeptidase
M, neurotensin endopeptidase, soluble angiotensin
II-binding protein, thimet oligopeptidase II) which
hydrolyzes oligopeptides such as neurotensin, bradykinin
and dynorphin A. TOP and neurolysin are neuropeptidases
expressed abundantly in the testis, but also found in
the liver, lung and kidney. They are involved in the
metabolism of neuropeptides under 20 amino acid residues
long and cleave most bioactive peptides at the same
sites, but recognize different positions on some
naturally occurring and synthetic peptides; they cleave
at distinct sites on the 13-residue bioactive peptide
neurotensin, which modulates central dopaminergic and
cholinergic circuits. TOP has been shown to degrade
peptides released by the proteasome, limiting the extent
of antigen presentation by major histocompatibility
complex class I molecules, and has been associated with
amyloid protein precursor processing.
Length = 637
Score = 29.8 bits (68), Expect = 4.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 310 EKKLELDEMREEIKRLEEVLKENECERAGL-LTKEKRKDEEIKRLKEEIGK 359
EK ELD E + LE +L++ R GL L + R E +K LK+E+ +
Sbjct: 94 EKNEELDP--ETRRLLERLLRDFR--RNGLDLPEATR--ERVKALKKELSE 138
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 29.6 bits (67), Expect = 4.4
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 21/134 (15%)
Query: 199 ENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEE-- 256
E KL KELE++ E + ++ N +II K E + K + +++ +EE
Sbjct: 86 EQGLQRKL-KELEREQKE---EEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQ 141
Query: 257 ---------SMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR 307
S K++K+ N+ ++RL + L K+ + +T+ K+ EE+ + I
Sbjct: 142 MEILEKALKSYLKIVKEENKSLQRLA------KALQKESEERTQDETKMIEEYRDKIDAL 195
Query: 308 RNEKKLELDEMREE 321
+N ++E + ++EE
Sbjct: 196 KNAIEVEKEGLQEE 209
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 29.6 bits (67), Expect = 4.5
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 301 EELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDE-EIKRLKEEIGK 359
EL++ R L ++ E+IK+LEE L + E L + + E E+ LKE +
Sbjct: 163 RELLEER-------LKQLEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKE---R 212
Query: 360 YKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEK 408
+ L + + L E +++ + D L + ES
Sbjct: 213 LEFLEKLLEDLERSEESSDRSSST-DTESSIADSLSSLSNASSDESVSD 260
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.2 bits (66), Expect = 4.9
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 105 NQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKEN 164
Q E ++ +NLE + EE ++ I + + + + + A + +L+ E
Sbjct: 142 MQLLEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADEL 201
Query: 165 EKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKEN-------EANVKLCKELEKQVHEL 217
+ K QE+ L ++ +K +E L +E EA EL +++ E
Sbjct: 202 NLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEA 261
Query: 218 NINKELDRL 226
+E R
Sbjct: 262 EKIREECRG 270
Score = 28.5 bits (64), Expect = 7.5
Identities = 23/114 (20%), Positives = 50/114 (43%)
Query: 244 IKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL 303
++ L + E MK+ + N+ + +NS++P++ + ++ + L +LA+E
Sbjct: 145 LEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLC 204
Query: 304 IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357
+ + EL + +I + L+E + E L + + L EEI
Sbjct: 205 DPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEI 258
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 29.4 bits (67), Expect = 5.0
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 271 RLNSVEPRIEVLTKDIQIKTEKLHKLAEEHE---ELIQTRRNEKKLELDEMREEIKRLEE 327
RL + R E L + ++ + L L + +I+ R L+ + K L E
Sbjct: 317 RLEVYKRRKEYLLEKLEERLHILEGLLKALNKIDFVIEVIRGSIDLK-----KAKKELIE 371
Query: 328 VLKENECE-----RAGLLTKEKRK--DEEIKRLKEEIGKYKMLVQERDQL 370
L E + + R LTKE+ + ++EI+ L++EI + + ++ +L
Sbjct: 372 ELSEIQADYLLDMRLRRLTKEEIEKLEKEIEELEKEIAELEKILASEKKL 421
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.3 bits (66), Expect = 5.1
Identities = 39/243 (16%), Positives = 98/243 (40%), Gaps = 24/243 (9%)
Query: 147 DKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKL 206
++++SR + + +K+ + + V + +E+ +K + Y + + +K
Sbjct: 204 EELLSRAGLDKKVPAKDLFEEEIKKVREALEELLNPLKP----NYYYKDEKYLDVVPLKA 259
Query: 207 CKELEKQVHELNINK----ELDRLNHEIIHK-DDEIRQNASKIKQLMSEIASKEESMKKL 261
+LEK +E K ++ +L E+ K + E+++ +K+++ E+ E++ ++L
Sbjct: 260 YADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEEL 319
Query: 262 IKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE--LDEMR 319
++ L L +E ++ + E++ ++ + + + K L +
Sbjct: 320 RQKGELLYANLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAK 379
Query: 320 EEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQ 379
+ R LKE E K E+ K + + R++L E +
Sbjct: 380 VNLDRQLSELKE-----------AIAYYESAKTALEKAEGKKAIEEIREELI--EEGLLK 426
Query: 380 NAK 382
+ K
Sbjct: 427 SKK 429
Score = 28.5 bits (64), Expect = 9.4
Identities = 24/158 (15%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 310 EKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQ 369
++K E D++++ LE+ L++ E L K +++++E++ L++ + + +
Sbjct: 272 DEKFERDKIKQLASELEKKLEK---ELKKLENKLEKQEDELEELEKAAEELRQKGELLYA 328
Query: 370 LANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLS 429
++EE ++ + +Y + + K+E++ K E+A++ + +L +
Sbjct: 329 NLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSE 388
Query: 430 MEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLE 467
++ + + L + ++++ + I+ LL+
Sbjct: 389 LKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 28.4 bits (64), Expect = 5.5
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 EFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFK 94
+++L + K+ +L + K + ++Q+L+ +Q S +Q L++ ++E +
Sbjct: 35 AAQKQLEKEFKKLQAELQKKEKELQKEEQKLQ--KQAATLSEEARKAKQQELQQKQQELQ 92
Query: 95 ELQEKYQRDLNQK 107
+ Q+ Q++L QK
Sbjct: 93 QKQQAAQQELQQK 105
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 29.1 bits (66), Expect = 5.6
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 237 IRQNASKIKQLMSEIA----SKEESMK--KLIKQNNELVERLNSVEPRIEVLTKDIQIKT 290
IR NA + + IA E LI EL+ERL I +D+ +K
Sbjct: 287 IRFNAEAAPERYARIARALGLPGEGDAADALIDALRELLERLG-----IPKRLRDLGVKE 341
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMRE 320
E + KLAE+ T N + ++++E
Sbjct: 342 EDIDKLAEDALADPCTATNPRPPTREDIKE 371
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 29.5 bits (66), Expect = 6.3
Identities = 66/358 (18%), Positives = 134/358 (37%), Gaps = 35/358 (9%)
Query: 38 QELRETMKQKDDKLLELAKTARTKD-QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKEL 96
+ELRE ++ +L L + T + +R++ + + LEK K ++
Sbjct: 1070 RELREQIQSVRQELESLQRAVVTPVVTDEEKVRERYDALIENTSKRITELEKAKLANLDV 1129
Query: 97 QEKYQRDLNQKTETIRSLTNKNLELKV-----------QYEEEIDNRDTR-----IKELT 140
+K +LN + + L N+ + + + E+++ DT+ + E+T
Sbjct: 1130 VKKAISNLNNLQQEVTLLRNEKIRMHTGTDKVDFSDIEKLEKQLQVIDTKLADAYLLEVT 1189
Query: 141 SDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKEN 200
S ++K + +E++ + + D+ N+ + + D D L N
Sbjct: 1190 KQISALEKEKPKNQSELKSKIAKFFDTTADIEVLRNERIKKHGSSKDPLDLSDLDKLSGN 1249
Query: 201 --EANVKLCKELEKQVHELNINKELDRLNHEIIHKDD-EIRQNASKIKQLMSEIASKEES 257
N L L I L+++ + + EI+QN + +L + + +
Sbjct: 1250 LQGVNQSLVSILIT-----TIRSSLNQMKPKTFEMQEKEIQQNFELLAKLEKTLDKSDTA 1304
Query: 258 MKK---LIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
K + K + L+ + + P + L + +L +L + H + + R + E
Sbjct: 1305 EKLREDIPKLKDLLIAKQKAY-PEMVQLQYKSEALITQLRELCQAHHDDLAKTRTARLQE 1363
Query: 315 LDEMREE--IKRLEEVLKENECERAGLLTKE----KRKDEEIKRLKEEIGKYKMLVQE 366
LD E I + L GL T E K K + + R K E+ K +
Sbjct: 1364 LDRQDREGGITGIVGNLFWGVTNMVGLTTDERLEIKMKQQSLARFKTELFNDKNDTDQ 1421
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
Length = 936
Score = 29.0 bits (65), Expect = 6.3
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 247 LMSEIASKEESMKKLIKQNNELVERLNSV-----------EPRIEVLTKDIQIKTEKLHK 295
L S I S ES+ + EL+++LN+V EP E L K + + ++ K
Sbjct: 662 LCSHIESNTESLLLMPSMTEELLQKLNAVHIYTVSELASREP--EALAKSLGLSKKEAEK 719
Query: 296 LAEEHE---ELIQTRRNEKK 312
L E EL++ R +K
Sbjct: 720 LIREAGDVLELLRRRSELRK 739
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.2 bits (66), Expect = 6.4
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLA 371
++E+D EE+ L+ + + E ER L +K KDE K E++ K L + ++ A
Sbjct: 397 RMEIDSKPEELDELDRRIIQLEIEREAL---KKEKDEASKERLEDLE--KELAELEEEYA 451
Query: 372 NMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSME 431
++ E++K + +++ E++++R+E E+ + R+ +L K AE++
Sbjct: 452 DLEEQWKAEKAAI----QGIQQIKEEIEQVRLE-LEQAE-REGDLAK----AAELQYG-- 499
Query: 432 ANNRRIQDLEEQLAENNA 449
++ +LE++L A
Sbjct: 500 ----KLPELEKRLQAAEA 513
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 28.9 bits (65), Expect = 6.4
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 82 CEQHLEKIKKEFKELQE---KYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKE 138
CE+ ++++KEF++LQE Y++ L + + T+ I + R+K+
Sbjct: 2 CEEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTS-----------AIARQRKRLKQ 50
Query: 139 LTSDTSEIDKIVSRKDAE-IEKLSKE 163
L ++ K ++ +D+E +E+L ++
Sbjct: 51 LIVSLKKLKKSLTPEDSELVEQLEEQ 76
>gnl|CDD|220251 pfam09462, Mus7, Mus7/MMS22 family. This family includes a
conserved region from the Mus7 protein. Mus7 is involved
in the repair of replication-associated DNA damage in
the fission yeast Schizosaccharomyces pombe. Mus7
functions in the same pathway as Mus81, a subunit of the
Mus81-Eme1 structure-specific endonuclease, which has
been implicated in the repair of the
replication-associated DNA damage. The MMS22 proteins
are involved in repairing double-stranded DNA breaks
created by the cleavage reaction of topoisomerase II.
Length = 603
Score = 29.1 bits (65), Expect = 6.8
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 41 RETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKY 100
R + + L EL +D L S+T + L + +++
Sbjct: 498 RVSSLKFQHSLTELLLNLLQRDPILLPFLADKTYSITSDTGENRRLSLLSSILSNMRKHS 557
Query: 101 QRDLNQKTETIRSLTNKNLELKVQYEE 127
+ TE ++ L + +K Y E
Sbjct: 558 SLSKAEYTELLQELLSS---MKKVYNE 581
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.1 bits (65), Expect = 6.9
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 18/153 (11%)
Query: 57 TARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTN 116
AR + ELR Q + + + L ++KKE LQ K ++ K + +S+ +
Sbjct: 424 QARQNESELR---NQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQS 480
Query: 117 KNLELKVQYEEEI--------DNRDTRIKELTSDTSEIDKIVSRKD------AEIEKLSK 162
LK + + + + + + +E T+ + SR++ + L
Sbjct: 481 MEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEM 540
Query: 163 ENEKLSMDLVFKENQEVTELMKEVDKKDNYIET 195
E +KL DL KE +E L KE + Y E+
Sbjct: 541 EIKKLEHDLKLKE-EECRMLEKEAQELRKYQES 572
>gnl|CDD|239947 cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid. This
subfamily contains sequences similar to Bacillus YpmR.
Length = 204
Score = 28.4 bits (64), Expect = 6.9
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 36 FEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQ-TQQSVTKANTC------------ 82
+L ET K + + DQ L+ L+ + Q+ + KA+
Sbjct: 25 RLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGNDLMQV 84
Query: 83 -EQH-LEKIKKEFKELQEKYQRDLNQKTETIRSL 114
E++ L ++FK+ +E YQ +L + + IR L
Sbjct: 85 LEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKL 118
>gnl|CDD|234241 TIGR03517, GldM_gliding, gliding motility-associated protein GldM.
This protein family, GldM, is named for the member from
Flavobacterium johnsoniae, which is required for a type
of rapid gliding motility found in certain members of
the Bacteriodetes. However, members are found also in
several members of the Bacteriodetes that appear not to
be motile. The best conserved region, toward the
N-terminus, is centered on a highly hydrobobic probable
transmembrane helix. Two paralogs are found in Cytophaga
hutchinsonii.
Length = 523
Score = 29.0 bits (65), Expect = 7.5
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 253 SKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKK 312
S E ++ + NN L+ LN + K +K+ ++ + + + E
Sbjct: 42 SLEAAVGNSEEYNNALLAELNKAVAKAPGKDKAWSESAQKVRTKSDSLMDYMNDLKEEII 101
Query: 313 LELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364
+ D +E+ KE + A ++ + + L+ + KY+ V
Sbjct: 102 RKADGEKEDGGPKG--AKEKDDLEAVMVGTLGPINGKGYELQASLNKYREDV 151
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 28.8 bits (65), Expect = 7.5
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 255 EESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLE 314
E+ L K+ ELVE N E I L K +++ K++EE +E I+ + +
Sbjct: 495 AEANAALDKKFRELVEARNEAESLIYSLEK----ALKEIVKVSEEEKEKIEEAITDLEEA 550
Query: 315 LDEMREEIKRLEEVLKE 331
L+ +EEIK E L+E
Sbjct: 551 LEGEKEEIKAKIEELQE 567
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 28.9 bits (64), Expect = 7.5
Identities = 86/419 (20%), Positives = 185/419 (44%), Gaps = 14/419 (3%)
Query: 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQ 74
+I+E E +K + + + + +L E K +D+ L EL + +EL D++ Q+
Sbjct: 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQ--KTETIRSLTNKNLELKVQYEEEIDNR 132
S++ E+ L+ K +L E+ + + + K + S E EE+
Sbjct: 308 SMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRT 367
Query: 133 DTRIKELTSDTSEIDKI-VSRKDAEIEKLSK--ENEKLSMDLVFKENQEVTELMKEVDKK 189
+ + E D +I + + +K +E+E+++K N+++ ++ + K E +L+ E +
Sbjct: 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQF 427
Query: 190 DNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKD-----DEIRQNASKI 244
+ E L + + + L + EK++H+L I + + E K+ E+ + K
Sbjct: 428 EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKN 487
Query: 245 KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL- 303
+L + K+L ++ +++ L + I K + +++ L E+ L
Sbjct: 488 IELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLR 547
Query: 304 --IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYK 361
+++ R E + DE++ ++ + EE + E E + K + + LK++I
Sbjct: 548 DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKN 607
Query: 362 MLVQERDQLANMLEEYKQ-NAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKK 419
++E Q L++ K + YE +KLE+EL + + E I E++ K
Sbjct: 608 KNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
>gnl|CDD|236165 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 547
Score = 28.9 bits (65), Expect = 7.8
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 22/85 (25%)
Query: 41 RETMKQKDDKLLELAKTARTKDQELRDLR----QQTQQSVTKANTCEQHLEKIKKEFKEL 96
R+ + K + L+ KT DQ LRD SV + N + + + + L
Sbjct: 130 RQALIGKAEGLVNQFKTT---DQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRL 186
Query: 97 QEKY----------QRD-----LNQ 106
QRD LNQ
Sbjct: 187 TGVGAGASPNDLLDQRDQLVSELNQ 211
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 28.7 bits (65), Expect = 7.8
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRK-------DEEIKRLK---EEIGKYKMLVQE 366
EM+ IK L +L ENE E GL T+ +R+ E K K E+I + L+ +
Sbjct: 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIA--RQLLLD 375
Query: 367 RD 368
RD
Sbjct: 376 RD 377
>gnl|CDD|217135 pfam02601, Exonuc_VII_L, Exonuclease VII, large subunit. This
family consist of exonuclease VII, large subunit
EC:3.1.11.6 This enzyme catalyzes exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 295
Score = 28.4 bits (64), Expect = 7.9
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 19 AELLVKQIEYKNNQLLEFEQELRETMKQKDDKL---LELAKTARTKDQELRDLRQQTQQS 75
AELLV +L EQ L +K + +K L L + R K R L Q ++
Sbjct: 138 AELLVPDRTELLQKLEGLEQRLSRALKNRLEKEQDRLNLLR-ERLKSLSRRLLEQHEERL 196
Query: 76 VTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQ 124
+ ++ + + E+ + + ++ L Q
Sbjct: 197 AELRDRLISSIQNLLSRKQSRLERLILNRELEKNSLLENKLATANLTAQ 245
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 28.4 bits (64), Expect = 8.0
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 124 QYEEEIDNRDTRIKELTSDTSEIDKIVSRK---DAEIEKLSKENEKLSMDLVFKENQEVT 180
Y++EI+ + +IKEL S +S IDK K + I+KL +E +K + N++
Sbjct: 28 LYDKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHI-----EHNEKTK 82
Query: 181 ELMKEV 186
+ + E
Sbjct: 83 KRLSEE 88
>gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional.
Length = 533
Score = 28.9 bits (64), Expect = 8.1
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHK 295
+I + +++ +M EIAS E ++ I+Q + V +++ V + L ++ + TE+L
Sbjct: 440 DIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLAN 499
Query: 296 LAEEHEELIQTRRNEKKLELDEMREEIKRLEEV 328
A+ + E E + R E +L+
Sbjct: 500 QADHLSSRVAVFTLE---EHEVARHESAQLQIA 529
>gnl|CDD|218618 pfam05508, Ran-binding, RanGTP-binding protein. The small Ras-like
GTPase Ran plays an essential role in the transport of
macromolecules in and out of the nucleus and has been
implicated in spindle and nuclear envelope formation
during mitosis in higher eukaryotes. The S. cerevisiae
ORF YGL164c encoding a novel RanGTP-binding protein,
termed Yrb30p was identified. The protein competes with
yeast RanBP1 (Yrb1p) for binding to the GTP-bound form
of yeast Ran (Gsp1p) and is, like Yrb1p, able to form
trimeric complexes with RanGTP and some of the
karyopherins.
Length = 302
Score = 28.4 bits (64), Expect = 8.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 272 LNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEK---KLELDEMREEIKRLEEV 328
L S P + L ++I E+L + A E +T NEK K M++ + R+EE
Sbjct: 79 LESTVPLTKSLRREIDEFDERLDEAASSEELSSRTSENEKESIKKIERYMKDLLARIEEA 138
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 28.3 bits (63), Expect = 8.4
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 223 LDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVL 282
L LN E+ EI+Q I +L SEI S E ++ L ++ E + +++ + L
Sbjct: 97 LLLLNDELEQLRREIQQLEKTIAELRSEITSLETEIRDLREELQEKEKDNETLQDELISL 156
Query: 283 TKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMRE 320
++ EKL KL +E++EL++ +K E + M E
Sbjct: 157 NIELNALEEKLRKLQKENQELVERWMAKKGQEAEAMNE 194
>gnl|CDD|197875 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins. Structures of
adenylosuccinate synthetase from Triticum aestivum and
Arabidopsis thaliana when compared with the known
structures from E. coli reveals that the overall fold is
very similar to that of the E. coli protein.
Length = 417
Score = 28.6 bits (65), Expect = 8.6
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 284 KDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKE 331
D ++ EKL +L + L++ + ++++E+ EE+ E L+
Sbjct: 146 FDEEVLREKLEELLDYKNFLLKKLYGAEPVDVEEILEELLEYAERLRP 193
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 28.5 bits (64), Expect = 8.7
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 208 KELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK-------EESMKK 260
V +L +E R+ +++ K E + + +I++ +++I K E + +
Sbjct: 418 PAPSSPVEKLAEKEE-KRIFDKLLKK--EGGEPSYEIRRELNDIMDKNFGIFRDESGLAE 474
Query: 261 LIKQNNELVERLNSVEP 277
+K+ +L ER +V
Sbjct: 475 ALKKIKKLRERYKNVRI 491
>gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2;
Provisional.
Length = 1049
Score = 28.7 bits (64), Expect = 8.7
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 145 EIDKIVSRKDAEIEKLSKENE---KLSMDLV-------FKENQEVTELMKEVDKKDNYIE 194
+ D V+ + IE S +E LS+ L+ + + + ++ YI
Sbjct: 239 DADGHVNLRSVRIEVSSASHEFIEDLSLLLLRFGIVSKIYRSTLIISGKRNLENFRKYIG 298
Query: 195 TLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASK 254
+KE ++ E K+ IN+EL RL +E+ N + SE A
Sbjct: 299 FSVKEKAEALEKIIEKSKKSERYPINEELKRLRLLFGFTRNELSSNIPFYSKYESEEAPS 358
Query: 255 EESMKKLI----KQNNELVERLNSVEPRIE------VLTKDIQIKTEKLHKLAEEHEELI 304
E + +++ + + L +++ +E +I D IK KL +L E E+
Sbjct: 359 YEILMEILNSIERGSKNLDKKIAVLEGKIRDHNYLKAFESDGLIKDGKLTELGRELLEVW 418
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKEN 332
+ R + K ++D +R I+ L V E+
Sbjct: 419 RNREFDSK-DVDYIRNLIENLVFVPVED 445
>gnl|CDD|238498 cd01016, TroA, Metal binding protein TroA. These proteins have been
shown to function as initial receptors in ABC transport
of Zn2+ and possibly Fe3+ in many eubacterial species.
The TroA proteins belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. A typical TroA
protein is comprised of two globular subdomains
connected by a single helix and can bind the metal ion
in the cleft between these domains. In addition, these
proteins sometimes have a low complexity region
containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 276
Score = 28.5 bits (64), Expect = 8.8
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 248 MSEIASKEESMKK-------LIKQNNELVERLNSVEPRI----EVLTKDIQIKTEKLHKL 296
MS++ SK S K L + L E + +P I ++ ++ E L +
Sbjct: 65 MSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEK 124
Query: 297 AEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKEN 332
EH++ Q ELD + K+ + E
Sbjct: 125 LPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPEQ 160
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.4 bits (64), Expect = 8.9
Identities = 17/114 (14%), Positives = 49/114 (42%)
Query: 105 NQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKEN 164
+ E ++ ++NLE + + + + + + + + ++++L E
Sbjct: 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198
Query: 165 EKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELN 218
E + + +++ +L++E+ K +E L +E + ++L + ELN
Sbjct: 199 EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252
Score = 28.4 bits (64), Expect = 8.9
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 389 DMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENN 448
D KD LE EL +L+ E +ELD+ E + ++ + +++++LEE+L E
Sbjct: 179 DRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE 238
Query: 449 AWINEQDLKIQEIQ 462
+ I + K E+
Sbjct: 239 SKIEDLTNKKSELN 252
>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 28.6 bits (65), Expect = 9.1
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
EKL +L EE +++ + L+++E+ EE E L+ + + LL + ++ +++
Sbjct: 157 EKLEQLLEEKNAILEKLYGAEPLDVEEILEEYLEYAERLRPYITDTSELLNRALKEGKKV 216
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 28.8 bits (64), Expect = 9.2
Identities = 53/300 (17%), Positives = 108/300 (36%), Gaps = 38/300 (12%)
Query: 60 TKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNL 119
T D ++ LR+ + +++ + + + + E+ +LQE+ I++L ++
Sbjct: 613 TNDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQA-----NALAHIQALNFASI 667
Query: 120 ELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEV 179
+L + +I R++ LT T I + K E+ +E E
Sbjct: 668 DLP-SAQRQIAELQARLERLTH-TQSDIAIAKAALDAAQTRQKVLER----QYQQEVTEC 721
Query: 180 TELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQ 239
L K+ +K L ++VH + L Q
Sbjct: 722 AGLKKD------------------LKRAAMLSRKVHSIAKQGMTGALQALGAA---HFPQ 760
Query: 240 NASKIKQLMSEIASKE--ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLA 297
A + + +I E ++K I N + RL E I ++ + T L ++
Sbjct: 761 VAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLR--EEIIGRMSDAKKEDTAALSEVG 818
Query: 298 EEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357
E +++ + + L D + E + R +E+L + + L D E ++E I
Sbjct: 819 AELDDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLL--SHLDHERALIEERI 876
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 287
Score = 28.4 bits (64), Expect = 9.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 83 EQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRD 133
++ LEK K+ +L ++Y RDL E + L E + + D
Sbjct: 36 DEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDAD 86
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 28.3 bits (64), Expect = 9.8
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 196 LLKENEANVKLCKELEKQVHELNINK--ELDRLNHEIIHKDDEIRQNASKIKQLMSEI-- 251
L++EN V+ K ++ L+++K ELD +++ + +E++ ++ +L EI
Sbjct: 6 LIRENPDAVRE-KLKKRGGDALDVDKLLELDEERRKLLRELEELQ---AERNELSKEIGR 61
Query: 252 --ASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
E+ ++LI + EL E+L +E ++ L ++
Sbjct: 62 ALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELD 99
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 28.1 bits (64), Expect = 9.9
Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 265 NNELVERLNSVEPRIEVLTK-----DIQIKTEKLHKLAEEH---EELIQTRRNEKKLELD 316
++++L ++E R E L ++ ++ KL++E+ E +++ R K+ +
Sbjct: 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQ-- 58
Query: 317 EMREEIKRLEEVLK-ENECERAGLLTKEKRKDEEIKRLKEEI 357
E+++ +E+L+ E++ E + EE+K L+E +
Sbjct: 59 ---EDLEEAKEMLEEESDPEMREMA------KEELKELEERL 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.128 0.325
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,831,523
Number of extensions: 2597797
Number of successful extensions: 10171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7136
Number of HSP's successfully gapped: 1837
Length of query: 495
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 394
Effective length of database: 6,457,848
Effective search space: 2544392112
Effective search space used: 2544392112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (27.3 bits)