RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy444
(495 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 88.0 bits (218), Expect = 2e-18
Identities = 62/345 (17%), Positives = 141/345 (40%), Gaps = 14/345 (4%)
Query: 1 MGLLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTART 60
M L + T+ E + + + + + + ++QK +L E +
Sbjct: 840 MXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899
Query: 61 KDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLE 120
K Q +L + ++ + +Q LE+I E + E+ + Q + + + L+
Sbjct: 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Query: 121 LKVQYEEEIDNR----------DTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMD 170
L+ Q EEE R D +IK++ D ++ ++ E + L + L+ +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 171 LVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEI 230
L +E ++ L K +K ++ I L + K +ELEK +L E L+ +I
Sbjct: 1020 LA-EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL--EGESSDLHEQI 1076
Query: 231 IHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKT 290
+I + +++ + E+ + ++ Q N ++++ +E I L +D++ +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
+K ++ +L K EL++ + +E+ + +
Sbjct: 1137 AARNKAEKQKRDL-SEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Score = 77.6 bits (191), Expect = 4e-15
Identities = 53/329 (16%), Positives = 119/329 (36%), Gaps = 23/329 (6%)
Query: 109 ETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLS 168
E +++ + K + ++ ++ T E + + + AE E ++ E
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 169 MDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNH 228
+ + EL + + + + IE + ++ K++++Q+ +L ++L+
Sbjct: 917 -----RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE--EQLEEEEA 969
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQI 288
E KIK++ +I E+ KL K+ L ER++ + + + +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 289 KTEKLHKLAEEHEELIQTRRNEKKL------ELDEMREEIKRLEEVLKENECERAGLLTK 342
T+ +K EL + E+K ++ E L E + E + + A L +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 343 EKRKDEEIKRLKEEIGKYKMLVQE--------RDQLANMLEEYKQNAKDVVYYEDMKDKL 394
+K+EE++ + ++++ E+ + E K L
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 395 EVELDKL--RMESAEKIKLRDSELDKKHE 421
EL+ L +E EL
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDY 1178
Score = 64.1 bits (156), Expect = 5e-11
Identities = 52/277 (18%), Positives = 120/277 (43%), Gaps = 21/277 (7%)
Query: 205 KLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQ 264
+L + E+Q KEL++ + ++ + + +++ +L +E EE +L +
Sbjct: 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE---AEEMRVRLAAK 921
Query: 265 NNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKR 324
EL E L+ +E RIE + Q + K+ ++ +L + + E++ +++ E
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL-EEQLEEEEAARQKLQLEKVT 980
Query: 325 LEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDV 384
+ +K+ E + + + + +E K L+E + + E ++ A L +
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK-------- 1032
Query: 385 VYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQL 444
+K+K E + +L + ++ K R K ++ E E +I +L+ Q+
Sbjct: 1033 -----LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE----QIAELQAQI 1083
Query: 445 AENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRN 481
AE A + +++ ++Q L + + + K R
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Score = 62.9 bits (153), Expect = 2e-10
Identities = 56/281 (19%), Positives = 123/281 (43%), Gaps = 19/281 (6%)
Query: 225 RLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNS-------VEP 277
R E+ KD+E+++ + ++ +E+ E+ +L ++ N L E+L + E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337
L Q E LH++ EE + R + + E +M++++ LEE L+E E R
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEE-EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYED-------- 389
L ++ D +IK+++++I + + + +LEE + + E+
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 390 MKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANN---RRIQDLEEQLAE 446
+K+K E + +L + ++ K R K ++ E E +I +L+ QLA+
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 447 NNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLD 487
+ ++++ ++ + EL ++ + L+
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Score = 53.3 bits (128), Expect = 2e-07
Identities = 40/262 (15%), Positives = 109/262 (41%), Gaps = 17/262 (6%)
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHK 295
++ + +++ E+ +E +K + EL ++ + +L + +Q +TE +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 296 LAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKE 355
E L ++ +++ + E R+EE + ++ +A +++ + ++L+E
Sbjct: 911 AEEMRVRLAAKKQELEEI----LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 356 EIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSE 415
E + L E+ +++ + + + ED +KL E L ++ E
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIM---EDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 416 LDKKHEV----------IAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTL 465
+K + I+E+++ ++ + Q+LE+ + ++ +I E+Q +
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 466 LEPIEPLSELVMKRRNIFQTLD 487
E L++ + + L+
Sbjct: 1084 AELKAQLAKKEEELQAALARLE 1105
Score = 29.8 bits (67), Expect = 2.9
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 17 SEAELLVKQIEYKNNQLLEFEQELR------ETMKQKDDKLLELAKTARTKDQELRDLRQ 70
E+ L +QI Q+ E + +L + + + A K +EL
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 71 QTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEE 128
Q+ + EK K++ E E + +L +T + +++
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 6e-13
Identities = 91/597 (15%), Positives = 191/597 (31%), Gaps = 156/597 (26%)
Query: 23 VKQIEYKNNQLLE-FEQELRETMKQKDDKLLELAKTARTKDQELRDL---RQQTQQSVTK 78
+ +Y+ +L FE + KD + ++ K+ +K +E+ + + ++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSK-EEIDHIIMSKDAVSGTLRL 67
Query: 79 ANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKE 138
T E++ ++F ++E + + I++ + + Y E+ D
Sbjct: 68 FWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR------- 118
Query: 139 LTSDTSEIDKI-VSRKDAEIEKLSKENEKL-SMDLVF--------K--------ENQEVT 180
L +D K VSR KL + +L V K + +V
Sbjct: 119 LYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 181 ELM---------KEVDKKDNYIETLLKENEANVKLCKELEKQVHE---------LNINKE 222
M K + + +E L K L +++ L I+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 223 LDRLNHEIIHKD--------DEIRQNASKI-------KQLM-SEIASKEESMKKLIKQNN 266
L + K + QNA K L+ + + + +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 267 ELVERLNSVEPR--IEVLTKDIQIKTEKL-------HKL-----AEEHEELIQTRRNEKK 312
L ++ P +L K + + + L + AE + + T N K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 313 LELDEMREEIKRLEEVLKENECER---------------AGLLTK--EKRKDEEIKRLKE 355
+ D++ I+ VL+ E + LL+ ++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 356 EIGKYKMLVQERDQ------------LANMLEEYKQNAKDVVYYE-----DMKDKLEVEL 398
++ KY ++ ++ + + EY + V +Y D D + L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 399 DK----------LRMESAEKIKL-RDSELD------K-KHEVIAEMKLSMEANNRRIQDL 440
D+ +E E++ L R LD K +H+ A N +Q L
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQL 527
Query: 441 EEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVM--KRRNIFQTLDLILGLTPE 495
+ +I + D K + + +L+ + + E ++ K ++ + + L E
Sbjct: 528 KFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-----IALMAE 575
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 64.7 bits (158), Expect = 4e-11
Identities = 47/343 (13%), Positives = 117/343 (34%), Gaps = 20/343 (5%)
Query: 29 KNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEK 88
+ Q+ E+ + + + + KT R + +R + + +
Sbjct: 752 RAGQVAYLEKIRADKL---RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYV---RGHQ 805
Query: 89 IKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK---VQYEEEIDNRDTRIKELTSDTSE 145
+ L+ + QK + + + + ++ + + + R K
Sbjct: 806 ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH 865
Query: 146 IDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVK 205
I+ + + L + + +E+ K ++ + + ++
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 206 L---CKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLI 262
L +L++++ E N KE L ++ + + K++ + + EE K
Sbjct: 926 LENKIMQLQRKIDEQN--KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 263 KQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEI 322
+ L E + + + + + E K E E+L+ + + L E E
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
Query: 323 KRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQ 365
+R+ + KE T EK+ EE K+L+ ++ ++ Q
Sbjct: 1044 RRIHDQAKEIT------ETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 61.3 bits (149), Expect = 4e-10
Identities = 39/254 (15%), Positives = 96/254 (37%), Gaps = 23/254 (9%)
Query: 156 EIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVH 215
++ L + + + + + K V +K L+
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG-----WLARVHYHRTLKAIVYLQCCYR 898
Query: 216 ELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSV 275
+ +EL +L E + + L ++I + + + K+ L+E++N++
Sbjct: 899 RMMAKRELKKLKIE----ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 276 EPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
E T+ ++ E+L EE + + ++EEI +L + L + + E
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATN--------RVLSLQEEIAKLRKELHQTQTE 1006
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGKY-KMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKL 394
+ + + E ++L E+ + +L E+++L + + + E M+ KL
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT-----ETMEKKL 1061
Query: 395 EVELDKLRMESAEK 408
E +L ++ ++
Sbjct: 1062 VEETKQLELDLNDE 1075
Score = 56.3 bits (136), Expect = 2e-08
Identities = 28/227 (12%), Positives = 85/227 (37%), Gaps = 14/227 (6%)
Query: 3 LLENLKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKD 62
++ + W ++ L + + + + +K + + K +
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLE 927
Query: 63 QELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK 122
++ L+++ + + + + + ++ + EK + D+ + + N +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 123 VQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTEL 182
+EEI + + ++ I++ + E E+L E ++ + T L
Sbjct: 988 -SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE-----------QNTLL 1035
Query: 183 MKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHE 229
E ++ + I KE ++ K+L ++ +L ++ +RL ++
Sbjct: 1036 KTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDERLRYQ 1080
Score = 52.8 bits (127), Expect = 2e-07
Identities = 42/257 (16%), Positives = 92/257 (35%), Gaps = 18/257 (7%)
Query: 24 KQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANT-- 81
K+ + + + + LR + + +++ + + +R + T
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 82 --CEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKEL 139
C K+E K+L+ + R + + + L NK ++L+ + +E+ + ++++
Sbjct: 893 LQCCYRRMMAKRELKKLKIE-ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951
Query: 140 TSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKE 199
+ + +++E+L E+ V L +E+ K + E
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAK-----NATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 200 N----EANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKE 255
E K E E+ V EL ++ L E + I A +I + M
Sbjct: 1007 KKTIEEWADKYKHETEQLVSEL--KEQNTLLKTEKEELNRRIHDQAKEITETME--KKLV 1062
Query: 256 ESMKKLIKQNNELVERL 272
E K+L N+ R
Sbjct: 1063 EETKQLELDLNDERLRY 1079
Score = 47.4 bits (113), Expect = 8e-06
Identities = 31/218 (14%), Positives = 75/218 (34%), Gaps = 4/218 (1%)
Query: 257 SMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELD 316
+ L + R E + IQ H L +
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL----AN 372
+ E+K+L+ + E + + E + + +++ E+ +YK L+++ + L +
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 373 MLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEA 432
E+ + + + + E+ + L+ E A+ K +K +
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 433 NNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIE 470
+ + +L+EQ E + +I + + + E +E
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Score = 29.7 bits (67), Expect = 2.5
Identities = 17/140 (12%), Positives = 49/140 (35%), Gaps = 6/140 (4%)
Query: 340 LTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELD 399
+ + + R KY+M+++E + +++++ + V+Y +
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHK--SIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 400 KLRMESAEKIKLRDSELDKKHEVIAEMKLSMEAN----NRRIQDLEEQLAENNAWINEQD 455
R A++ + + E ++ + +E R+I + ++ +N +
Sbjct: 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 456 LKIQEIQRTLLEPIEPLSEL 475
+ L +E L
Sbjct: 956 ITYSTETEKLRSDVERLRMS 975
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 49.7 bits (119), Expect = 2e-06
Identities = 37/275 (13%), Positives = 96/275 (34%), Gaps = 18/275 (6%)
Query: 61 KDQELRDLRQQT-QQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNL 119
+ + + R+Q TK++ ++ E ++ + RD E+++S N +
Sbjct: 750 QLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHK 809
Query: 120 ELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENE-KLSMDLVFKENQE 178
E K + + ++ + + +++ R+ NE + + K QE
Sbjct: 810 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE 869
Query: 179 VTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIR 238
E ++ K+ I LL++ ++ K+LE ++ + I +++
Sbjct: 870 HAEALRIELKRQKKIAVLLQKYN---RILKKLENWATTKSVYLGSNETGDSITAVQAKLK 926
Query: 239 QNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAE 298
+ + S + ++ Q EL + TE+
Sbjct: 927 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG-------------VPELTERKDTFFA 973
Query: 299 EHEELIQTRRNEKKLELDEMREEIKRLEEVLKENE 333
+ +++ K L E ++++E++ +
Sbjct: 974 QQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Score = 42.0 bits (99), Expect = 4e-04
Identities = 16/174 (9%), Positives = 50/174 (28%), Gaps = 2/174 (1%)
Query: 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQ 74
+ +L + + E E+ T + E A+ R + + + + Q+
Sbjct: 831 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 890
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDT 134
+ K + + +++L + E + + + +
Sbjct: 891 YNRILK--KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 948
Query: 135 RIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDK 188
+ +LT ++ + K S + E +++++
Sbjct: 949 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 1002
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 4e-05
Identities = 66/385 (17%), Positives = 112/385 (29%), Gaps = 154/385 (40%)
Query: 16 ISEAELLVKQIEY------KNNQ----------LLEFEQELRETMKQKD-----DKLLEL 54
+ AEL+ K + Y + L EFE ++ D KLL+
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQE 111
Query: 55 AKTARTKDQE-LR---DLRQQTQQSVTKANTCEQH----LEKIKKE-------------- 92
T K +E ++ R ++ K + +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKK-----SNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 93 ---FKELQEKYQ------RDL-NQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKE-LT- 140
F+EL++ YQ DL ET+ L L+ + + + ++ I E L
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-----ILEWLEN 221
Query: 141 -SDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKE 199
S+T + D ++S I S L+ V +L +Y+ T
Sbjct: 222 PSNTPDKDYLLS---IPI----------SCPLIG-----VIQLA-------HYVVT---- 252
Query: 200 NEANVKLCKELEKQVHELNINKELDRLNHEIIH-KD-------------DEIRQNASKIK 245
K L EL L H + + + K
Sbjct: 253 -------AKLLGFTPGELR-----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 246 QLMSEI----------ASKEESMKKLIKQNNE------L-VERLN--SVEPRIEVLTKDI 286
++ I S S+ + +NNE L + L V+ +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN------ 354
Query: 287 QIKTEKLHKLAEEHEE--LIQTRRN 309
KT H A + E L+ +N
Sbjct: 355 --KTNS-HLPAGKQVEISLVNGAKN 376
Score = 40.8 bits (95), Expect = 0.001
Identities = 53/329 (16%), Positives = 104/329 (31%), Gaps = 119/329 (36%)
Query: 169 MDLVFKENQEVTELMKEVDK--KDNY---IETLLKENEANVKLCKELEKQVHELNINKEL 223
MDL +K ++ ++ D KD Y I ++ N L
Sbjct: 1633 MDL-YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-------------------VNL 1672
Query: 224 DRLNHEIIH----KDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELV---------E 270
IH K IR+N S + + I + +K+ K+ NE
Sbjct: 1673 ------TIHFGGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 271 RLNSVE---PRI--------EVLTKDIQIKTEKL---HKLAE-----------EHEELIQ 305
L++ + P + E L I + H L E E L++
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 306 T--RR---NEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKY 360
R + + DE+ + + R ++ ++R+ + G
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPG----RVAASFSQEALQYVVERVGKRTGW- 1839
Query: 361 KMLVQERDQLANMLEEYKQ-----NAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSE 415
LV+ + N E +Q + + + D + L+ +++ +KI
Sbjct: 1840 --LVE----IVNYNVENQQYVAAGDLRAL-------DTVTNVLNFIKL---QKID----- 1878
Query: 416 LDKKHEVIAEMKLSMEANNRRIQDLEEQL 444
I E++ S+ ++++E L
Sbjct: 1879 -------IIELQKSL-----SLEEVEGHL 1895
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 42.0 bits (99), Expect = 3e-04
Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 12/184 (6%)
Query: 250 EIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELI----- 304
+ +K + ++I +N + +++ KD I E + L + L+
Sbjct: 99 QKGNKLVELMRIISRNGDTSYKIDGKTVSY----KDYSIFLENENILIKAKNFLVFQGDV 154
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKENE---CERAGLLTKEKRKDEEIKRLKEEIGKYK 361
+ + +EL M EE+ + KE E + L + +R+ E+ YK
Sbjct: 155 EQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYK 214
Query: 362 MLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHE 421
E Y + + ++L+ E K+ + + K R +K +
Sbjct: 215 SPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFD 274
Query: 422 VIAE 425
+++
Sbjct: 275 YVSD 278
Score = 36.2 bits (84), Expect = 0.021
Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 27/220 (12%)
Query: 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRR------- 308
+K LI ++ NS + E + ++ + R
Sbjct: 60 NILKDLI--YRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDT 117
Query: 309 ----NEKKLELDEMREEIKRLEEVLKENEC--ERAGLLTKEKRKDEEIKRLKEEIGKYKM 362
+ K + + ++ ++K + + + E+ R+ EE+
Sbjct: 118 SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ 177
Query: 363 LVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR--MESAEKIKLRDSELDKKH 420
+E ++L +E+ ++A + + ++ EL + R S D+
Sbjct: 178 YKKEYEELKEKIEKLSKSATES---IKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAE 234
Query: 421 EVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQE 460
+ + L+ + + + K +E
Sbjct: 235 GRFEVIN-------NETEQLKAEEKKILNQFLKIKKKRKE 267
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 39.4 bits (91), Expect = 0.003
Identities = 28/242 (11%), Positives = 80/242 (33%), Gaps = 18/242 (7%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
K + S + + S KK ++ E + +
Sbjct: 1059 KAPATPQAATSVTNPAAGDGISVQNDPPVDSSGSPASPKKGKANADDYAESF--RDFQCS 1116
Query: 281 VLTKDIQIKTEKLH-KLAEEHEELIQTRRNE-KKLELDEMREEIKRLEEVLKEN--ECER 336
+ K EK++ + H + +Q + +E ++++ ++ ++
Sbjct: 1117 QIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAG 1176
Query: 337 AGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEV 396
+++ + + L+ + ++QE D A ++ Y +K+
Sbjct: 1177 ESADKQKEDQKKVRSALERIVKLADKVIQETDSEA------------LLSYYGLKNDTRA 1224
Query: 397 ELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456
+ K++ ++ L KK +A++ + + + ++ E E +++ D
Sbjct: 1225 DAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDS 1284
Query: 457 KI 458
K
Sbjct: 1285 KA 1286
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 39.5 bits (91), Expect = 0.003
Identities = 42/344 (12%), Positives = 109/344 (31%), Gaps = 3/344 (0%)
Query: 130 DNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKK 189
++ +++E + + ++ +E + + + + K ++
Sbjct: 298 LHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEW 357
Query: 190 -DNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLM 248
N I L + + K ++ + + + + EI+ K +
Sbjct: 358 LLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFE 417
Query: 249 SEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRR 308
S++A+ ++ ++++ EL E P + + I + + L L ++ E ++
Sbjct: 418 SDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTE 477
Query: 309 NEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKD-EEIKRLKEEIGKYKMLVQER 367
+ E KR E L EEI+ L ++K + +
Sbjct: 478 KLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDA 537
Query: 368 DQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMES-AEKIKLRDSELDKKHEVIAEM 426
D+ + +V + + + K + + ++ + + E
Sbjct: 538 DKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEE 597
Query: 427 KLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIE 470
+ N R + Q WI + +I I + +E
Sbjct: 598 HARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLE 641
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 39.3 bits (92), Expect = 0.003
Identities = 17/174 (9%), Positives = 51/174 (29%), Gaps = 2/174 (1%)
Query: 15 KISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQ 74
+ +L + + E E+ T + E A+ R + + + Q
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK-IAVLLQ 881
Query: 75 SVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDT 134
+ ++ K + E + +++L + E + + + +
Sbjct: 882 KYNRILKKLENWATTKSVYLGSNET-GDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLS 940
Query: 135 RIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDK 188
+ +LT ++ + K S + E +++++
Sbjct: 941 ILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 38.1 bits (89), Expect = 0.006
Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 21/176 (11%)
Query: 217 LNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVE 276
L ++++L + I K ++++ K++ + E + +S+KK LVE +
Sbjct: 31 LAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQH-----LVEVRSMAN 85
Query: 277 PR-------------IEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIK 323
P + T D + + + + + ++M++
Sbjct: 86 PPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYM 145
Query: 324 RLEEVLKENECER---AGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376
E AG + K + + + + +Q+ + A ++
Sbjct: 146 SNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQ 201
Score = 28.5 bits (64), Expect = 5.6
Identities = 27/187 (14%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query: 167 LSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRL 226
L++D + QEV DK+ + E L K A ++ + K + + ++ +
Sbjct: 31 LAVDEQLHKQQEVI-----ADKQMSVKEDLDKVEPAVIEAQNAV-KSIKKQHLVEVRSMA 84
Query: 227 NHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDI 286
N K + A + + ++ ++ ++++N S E + + + +
Sbjct: 85 NPPAAVKL-ALESIALLLGESTTDW---KQIRSIIMRENFIPTIVNFSAEEISDAIREKM 140
Query: 287 QIKTEKLHKLAEE--------HEELIQTRRNEK-----KLELDEMREEIKRLEEVLKENE 333
+ E +++ + ++ +R E+++LE+ K+N+
Sbjct: 141 KKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQ 200
Query: 334 CERAGLL 340
+ LL
Sbjct: 201 QKLEALL 207
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 37.6 bits (86), Expect = 0.008
Identities = 42/291 (14%), Positives = 93/291 (31%), Gaps = 7/291 (2%)
Query: 159 KLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELN 218
L E +S D V + + + E + + + E + + L++ + L+
Sbjct: 406 NLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLD 465
Query: 219 INKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPR 278
+ D + + + K L +E + + K ++ + ++ E S
Sbjct: 466 EEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDT 525
Query: 279 IEVLTK---DIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
I +L K ++ + + LDE+++E + LE LK +
Sbjct: 526 IVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFD 585
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLE 395
+D I EE L + L ++E ++ + E
Sbjct: 586 MTSKFLTALAQDGVI---NEEALSVTELDRVYGGLTTKVQE-SLKKQEGLLKNIQVSHQE 641
Query: 396 VELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAE 446
K A + L ++ E+ +++ + +L E L
Sbjct: 642 FSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVR 692
Score = 28.0 bits (61), Expect = 9.8
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 5/157 (3%)
Query: 17 SEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSV 76
L I N E+ +K L E+ K + +L+ +
Sbjct: 531 KPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKF 590
Query: 77 TKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRI 136
A + + + EL Y + E+++ ++V ++E +++
Sbjct: 591 LTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQE-----FSKM 645
Query: 137 KELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVF 173
K+ ++ + ++++ + + L F
Sbjct: 646 KQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKF 682
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 37.6 bits (87), Expect = 0.010
Identities = 49/337 (14%), Positives = 112/337 (33%), Gaps = 19/337 (5%)
Query: 2 GLLENLK--FKEWHTKISEAELLVKQIEYKNNQLLE-FEQELRETMKQKDDKLLELAKTA 58
L + + K ++ +L K + E + +L +
Sbjct: 707 DLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDP 766
Query: 59 RTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKN 118
+ + E ++ + + E L + EF L+ Q DL+ +
Sbjct: 767 TSIESE--KEKKDFVKLFGEYLRAENIL-QNYDEFATLKALQQIDLSDPVAVEKFKAEHY 823
Query: 119 LELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQE 178
++ + ++ E R +++ S + I + E E KE D V E
Sbjct: 824 VDDE-KFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFE--- 879
Query: 179 VTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHEL-----NINKELDRLNHEIIHK 233
+L+K + +YI L+ E+ K E+ ++V L + + I
Sbjct: 880 -VDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQT 938
Query: 234 DDEIRQNASKIKQLMSEIASKEES--MKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTE 291
+ + + + I A +E+ + LIK+ N + + +
Sbjct: 939 NLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRYIRTS-LKREYATENGT 997
Query: 292 KLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEV 328
+L++ + L + +K+ ++ I++ + V
Sbjct: 998 ELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKFKGV 1034
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 36.7 bits (85), Expect = 0.013
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 413 DSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPL 472
+ K E + ++ +++ +IQ+L E N ++ ++ +I++T P +
Sbjct: 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDT 63
Query: 473 S 473
+
Sbjct: 64 T 64
Score = 33.2 bits (76), Expect = 0.18
Identities = 7/53 (13%), Positives = 25/53 (47%)
Query: 314 ELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQE 366
+ ++ EE++ LE++ ++ + L + + + RL++++ +
Sbjct: 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 36.8 bits (84), Expect = 0.015
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 32/161 (19%)
Query: 182 LMKEVDKKD----NYIETLLKENEANVKLCKELEKQVHEL------NINKELDRLNHEII 231
L+ EVD+ N + L + N K L K + EL N +
Sbjct: 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN- 115
Query: 232 HKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTE 291
+++R +++ + E + ++K ++ ++RL EV DI+I++
Sbjct: 116 ---EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL-------EVDI-DIKIRSC 164
Query: 292 KLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKEN 332
K +R E K++L++ + + K+LE+V+ N
Sbjct: 165 KGSC----------SRALEHKVDLEDYKNQQKQLEQVIAIN 195
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 36.8 bits (85), Expect = 0.018
Identities = 24/205 (11%), Positives = 76/205 (37%), Gaps = 23/205 (11%)
Query: 137 KELTSDTSEIDKIVSRKDAEIEKL---SKENEKLSMDLVFKENQEVTELMKEVDKKDNYI 193
+ ++++ + ++KL + + L + L K +E+ ++ ++K +
Sbjct: 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN-RELDVKNEQANQKLKQM 1964
Query: 194 ETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIAS 253
+ E K +EL+ Q+ NKE+ + ++ +++
Sbjct: 1965 VQDQQAAEIKQKDARELQVQLDV--RNKEIAVQKVKAYADLEKAEPTGPLREEV----EQ 2018
Query: 254 KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEE----------L 303
E + +L + +E+V + ++E I ++ + ++ E + L
Sbjct: 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078
Query: 304 IQTRRNEK---KLELDEMREEIKRL 325
+ +E+ + + + ++ +
Sbjct: 2079 LDNLNSERGRWEQQSENFNTQMSTV 2103
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 35.8 bits (82), Expect = 0.024
Identities = 28/162 (17%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
KE + + + ++ + LM E+ KE+ +K+L + L+ + P +E
Sbjct: 27 KEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVE 86
Query: 281 VLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKL--ELDEMREEIKRLEEVL-KENECERA 337
+Q + + +L E ++ + ++ E ++++L+E L ++ C+R+
Sbjct: 87 SFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRS 146
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQ 379
+T+ + ++ + KE++ +YK + + A + + K
Sbjct: 147 ATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKP 188
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 34.9 bits (81), Expect = 0.048
Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 310 EKKLELDEMREEIKRLEEVLKE----NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQ 365
++ + +K LE L++ N+ E A +++E RL+ + ++ L
Sbjct: 14 GGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEA------ARLRRTVDTFRSLES 67
Query: 366 ERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMES 405
+ L ++EE ++ + E ++ +LD+L ++
Sbjct: 68 DLQGLLELMEELPAEEREALKPE--LEEAAKKLDELYHQT 105
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 34.5 bits (80), Expect = 0.072
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMRE---EIKRLEEVLKENECERAGLLTKEKR-- 345
+ L KL+ ++ +Q+ +E E+ ++ + EV ++ GL
Sbjct: 213 DGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVY-----DKFGLFGNTPTLM 267
Query: 346 ------KDEEIKRLKE 355
EEI +K
Sbjct: 268 AHCIHSSKEEINLIKR 283
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.8 bits (78), Expect = 0.073
Identities = 31/218 (14%), Positives = 84/218 (38%), Gaps = 5/218 (2%)
Query: 228 HEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQ 287
+ + D+ + S + + E A E++ + + + +L P+ + K
Sbjct: 25 KRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWM 84
Query: 288 IKTEKLHKLAEEHEELIQTRRNEKKLELDEMREE--IKRLEEVLKENECERAGLLTKEKR 345
+ +++E H E+ + N+ ++ ++E K++ KE + G +K
Sbjct: 85 AFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP 144
Query: 346 KDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMES 405
+++K ++ + +E + K D + KL+ +++K + +
Sbjct: 145 WAKKLKEVEAAKKAHHAACKEEKLAISREANSKA---DPSLNPEQLKKLQDKIEKCKQDV 201
Query: 406 AEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQ 443
+ + + L + + + +ME + Q EE+
Sbjct: 202 LKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEK 239
Score = 27.8 bits (60), Expect = 8.6
Identities = 29/222 (13%), Positives = 79/222 (35%), Gaps = 7/222 (3%)
Query: 194 ETLLKENEANVKLCKELEKQVHE-LNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIA 252
+ +K + +LC +L +HE I K + E + ++ + + +
Sbjct: 25 KRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWM 84
Query: 253 SKEESMKKLIKQNNELVERLNS--VEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNE 310
+ +++ + + E+ L + E + + K +E E+ + +
Sbjct: 85 AFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP 144
Query: 311 KKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL 370
+L E+ K KE + +++E + E++ K + +++ Q
Sbjct: 145 WAKKLKEVEAAKKAHHAACKEEK----LAISREANSKADPSLNPEQLKKLQDKIEKCKQD 200
Query: 371 ANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLR 412
+E + + + + +E + + E+ +LR
Sbjct: 201 VLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLR 242
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 34.0 bits (78), Expect = 0.094
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 317 EMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376
+M EEI + E + ++ L +++I LKE++ + + QE + + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Score = 29.8 bits (67), Expect = 2.0
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 418 KKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSE 474
K E I + + S+ ++ I+ L+E N + KI ++ + + E
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIY-------NSNNQKIVNLKEKVAQLEAQCQE 50
Score = 27.5 bits (61), Expect = 9.4
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 407 EKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRT 464
E+I ++ + I ++ +NN++I +L+E++A+ A E +I
Sbjct: 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDI 61
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.2 bits (77), Expect = 0.11
Identities = 36/252 (14%), Positives = 91/252 (36%), Gaps = 3/252 (1%)
Query: 82 CEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTS 141
Q ++ + +EL + ++ + E + K+++ Q E R
Sbjct: 339 MGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQ 398
Query: 142 DTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENE 201
+ S I +E K + + + ++++ KK Y E K +
Sbjct: 399 NQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKK--YYEEPRKGIQ 456
Query: 202 ANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKL 261
A L L+ + + + D+ E + + R A + + + +++
Sbjct: 457 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM 516
Query: 262 IKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREE 321
++Q + + + ++ +Q+ E+ LA + +E Q + + E M+ E
Sbjct: 517 MEQKERSYQE-HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 575
Query: 322 IKRLEEVLKENE 333
I+ L+ ++ +
Sbjct: 576 IQDLQTKMRRRK 587
Score = 29.5 bits (65), Expect = 3.1
Identities = 38/216 (17%), Positives = 83/216 (38%), Gaps = 5/216 (2%)
Query: 245 KQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELI 304
+Q+ ++ ES+++L+ + + V R D + E +L ++ ++
Sbjct: 337 QQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFC 396
Query: 305 QTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLV 364
+ + + + I E +AG+ +K +++L++ KY
Sbjct: 397 KQNQEASSDRCSGLLQVIFS-----PLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP 451
Query: 365 QERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIA 424
++ Q +L+ Y ++ + + D+ E +K K + + HE+
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 511
Query: 425 EMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQE 460
+ + ME R Q+ +QL E Q LK QE
Sbjct: 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 547
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 33.9 bits (78), Expect = 0.13
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMRE---EIKRLEEVLKENECERAGLLTKEKR-- 345
+L +A+ + IQ+ +E + E++ ++ K V ++ LLT +
Sbjct: 246 GELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVY-----DKNNLLT--NKTV 298
Query: 346 -------KDEEIKRLKE 355
EE+ E
Sbjct: 299 MAHGCYLSAEELNVFHE 315
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 33.4 bits (77), Expect = 0.15
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 304 IQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE 356
+N E+ +++ + +E K DEE++ +++E
Sbjct: 329 NDPSKNVSSKEVARLKKLVSYWKEQA------------GRKGDDEELEEIQDE 369
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.16
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEE- 349
E + K EE + +Q K+ E RE+ K+ E + + E+ R ++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 350 -IKRLKEEI 357
++ +I
Sbjct: 145 FYQQPDADI 153
Score = 29.7 bits (66), Expect = 1.6
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 348 EEIKRLKEEIGKYKMLVQERDQLAN-MLEEYKQNAKDVV--YYEDMKDKLEVELDKLRME 404
E I++ +EE + +QE D + M +E+++ AK + + + +++E R+
Sbjct: 85 ESIRKWREE---QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 405 SAEKIKLRDSEL 416
+ D+++
Sbjct: 142 DKAFYQQPDADI 153
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 299 EHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIG 358
E + L++ ++++ + L E + A + + + E+ L E+G
Sbjct: 453 SREWIRT--AKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG 510
Query: 359 KYKMLVQERDQLANMLEEYKQNA 381
+R L K+
Sbjct: 511 ASDEADLQRQLLEEAFGGVKEEG 533
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 33.7 bits (76), Expect = 0.18
Identities = 7/89 (7%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
+ + + + ++ L++ ++ + + + + + + + L++ +
Sbjct: 718 AETNNILDGKTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKA 777
Query: 351 KRLKEEIGKYKMLVQERDQLANMLEEYKQ 379
+K++I + L+ +++ +L +Y++
Sbjct: 778 HVIKKKIEELYHLMSDQNLS--LLPDYEK 804
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 33.4 bits (76), Expect = 0.21
Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 23/193 (11%)
Query: 147 DKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKL 206
+ RKD E+L E EK S + F + EL ++ I+ L
Sbjct: 583 EYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFP---- 638
Query: 207 CKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNN 266
NKE + E + + S E + +I
Sbjct: 639 -----------RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPE 687
Query: 267 ELVERLNS-VEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN-EKKLELDEMREEIKR 324
EL + RI LTK E+ KL ++ +E N K D ++K
Sbjct: 688 ELYGTYEYLLGMRIWSLTK------ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKA 741
Query: 325 LEEVLKENECERA 337
E +E A
Sbjct: 742 FEVGYQEFLQRDA 754
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 33.0 bits (76), Expect = 0.24
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 64 ELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELK 122
++ L+++ K ++ ++ + KEL E ++ + R+L N+ EL+
Sbjct: 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR----RTLHNELQELR 58
Score = 32.2 bits (74), Expect = 0.34
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 320 EEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQ 379
+I L+E + + + A L K K + +K L E R L N L+E +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNE---ILIKEETVRRTLHNELQELRG 59
Query: 380 N 380
N
Sbjct: 60 N 60
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.6 bits (74), Expect = 0.27
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 193 IETLLKENEANVKLCKELEKQVHEL--NINKELDRLNHEIIHKDDEIRQNASKIKQLMSE 250
I+ LKE E + K ++ KEL+ + + + + + ++ + L
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA 154
Query: 251 IASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNE 310
+ S K++ + + + RL L K+I +T + +E+ + I +N
Sbjct: 155 V----TSYNKILTEEDLQMRRLA------TALQKEIGERTHAETVMVKEYRDKIDALKNA 204
Query: 311 KKLELDEMREE 321
++E D M+EE
Sbjct: 205 IEVERDGMQEE 215
Score = 29.2 bits (65), Expect = 4.2
Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
Query: 42 ETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQ 101
E++KQ LL + + L + Q + + +++ K +++EK+
Sbjct: 67 ESVKQ--AVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFG 124
Query: 102 RDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLS 161
++L E + + N +++ E++ D + + +KI++ +D ++ +L+
Sbjct: 125 KEL----EEVYNFMNGEANAEIEDEKQFDILNKAVTSY-------NKILTEEDLQMRRLA 173
Query: 162 KENEKLSMDLVFKENQEVTELMKEVDKKDNYIE 194
+K + E V E ++D N IE
Sbjct: 174 TALQKEIGERTHAETVMVKEYRDKIDALKNAIE 206
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.4 bits (74), Expect = 0.34
Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 49 DKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKT 108
D+L++ D E R R + N C + + + K+ + + + N +
Sbjct: 34 DQLVKA-------DSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLS 86
Query: 109 ETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEI 157
+ Q ++ D I + ++ +++ EI
Sbjct: 87 FDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREI 135
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 32.3 bits (74), Expect = 0.37
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 313 LELDEMREEIKRLEEVLKE----NECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERD 368
L+ D +E ++ + L++ NE ERA L KE+ L+ + + Q +
Sbjct: 25 LDYDAKKERLEEVNAELEQPDVWNEPERAQALGKER------SSLEAVVDTLDQMKQGLE 78
Query: 369 QLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLR 412
++ +LE + A D E+ ++ ELD L E +++ R
Sbjct: 79 DVSGLLELAVE-ADD----EETFNEAVAELDALE-EKLAQLEFR 116
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.4 bits (73), Expect = 0.42
Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 8/171 (4%)
Query: 105 NQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKEN 164
Q +++R L+ K E K Y ++ + + + + D E +L +
Sbjct: 886 YQVFDSLR-LSTKQFEKK--YRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADR 942
Query: 165 EKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLC-----KELEKQVHELNI 219
E L + K + + N ++ E + L L + + +L I
Sbjct: 943 ELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTI 1002
Query: 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVE 270
+ DR+ ++ + + Q + K + + + K + VE
Sbjct: 1003 FRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVE 1053
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.4 bits (74), Expect = 0.45
Identities = 39/351 (11%), Positives = 94/351 (26%), Gaps = 48/351 (13%)
Query: 119 LELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQE 178
EL+ +E + L D E+ K + +L V E +
Sbjct: 159 RELRYGKQETYP-LPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVK 217
Query: 179 VTELMKEVDKKDNYIETLLKENEANVKL---------------CKELEKQVHELNINKEL 223
+ + K E +L KELE+ + ++
Sbjct: 218 KERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDE 277
Query: 224 DRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLT 283
+ + + + +++ +A + ++ + VE + +
Sbjct: 278 PVATYFLPVGMTPLVVHGEIVEKGQ-PLAEAKGLLRMPRQVRAAQVEAE-EEGETVYLTL 335
Query: 284 KDIQIKTEKLHKLAEEHEELIQTRRNEK--KLELDEMREEIKRLEEVLKENECERAGLLT 341
+ + + + + R E K+ EE E + E A +L
Sbjct: 336 FLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILV 395
Query: 342 KEKRKDEEIKRLKEEIGKY---KMLVQERDQLANMLEEYKQNAKDVVYYEDMKDK----- 393
+ R ++ G ++ + ++ + + + ++
Sbjct: 396 VKARVYPFEDDVEVSTGDRVAPGDVLADGGKV---KSDVYGRVEVDLVRNVVRVVESYDI 452
Query: 394 -----------------LEVELDKLRMESAEKIKLRDSELDKKHEVIAEMK 427
LE +L E + R ++ K+ EV+
Sbjct: 453 DARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFL 503
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 0.48
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 29/149 (19%)
Query: 312 KLELDEMREEIKRLEEVLKENECERAGLLTKEKRKD--EEIKRLKEEIGKYKMLVQERDQ 369
++ L+ EEI LE + E ER L KEK D E +K ++ E + + ++
Sbjct: 393 RMALESAPEEIDALERKKLQLEIEREAL-KKEKDPDSQERLKAIEAE------IAKLTEE 445
Query: 370 LANMLEEYKQNAKDVVYYEDMKDKLEVELDKLR--MESAEKIKLRDSELDKKHEVIAEMK 427
+A + E+ + ++++ + + LD++R +E AE R +L++ AE++
Sbjct: 446 IAKLRAEW-EREREIL---RKLREAQHRLDEVRREIELAE----RQYDLNR----AAELR 493
Query: 428 LSMEANNRRIQDLEEQLAENNAWINEQDL 456
+ LE ++ + +
Sbjct: 494 YG------ELPKLEAEVEALSEKLRGARF 516
Score = 30.2 bits (69), Expect = 2.0
Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 286 IQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKR 345
+Q++ E+ L +E + Q R + E+ ++ EEI +L + +E+
Sbjct: 411 LQLEIEREA-LKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWE-----------RERE 458
Query: 346 KDEEIKRLKEEIGKYKMLVQE 366
+++ + + + + ++
Sbjct: 459 ILRKLREAQHRLDEVRREIEL 479
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.6 bits (71), Expect = 0.49
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 1/163 (0%)
Query: 145 EIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANV 204
+DK + + I + K+ +K D +N+ + L +E + + +
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKE-AKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 205 KLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQ 264
++K++ E+ +EL LN E + Q +I+ L +EI K E + L K+
Sbjct: 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133
Query: 265 NNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTR 307
EL + +E +E K+I+ + + K E+ E + +
Sbjct: 134 MLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.65
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 319 REEIKRLEEVLK 330
++ +K+L+ LK
Sbjct: 19 KQALKKLQASLK 30
Score = 28.0 bits (61), Expect = 4.7
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 343 EKRKDEEIKRLKEEIGKY 360
EK + +K+L+ + Y
Sbjct: 18 EK---QALKKLQASLKLY 32
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 31.7 bits (73), Expect = 0.66
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 256 ESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLEL 315
+ +++I+ +LV+ + + L + HKLA E + T K+
Sbjct: 211 KYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSR 270
Query: 316 DEMREEIK-RLEEVLKENECERAGLLTKEKRKDEEIKRLKEEI 357
DE +I+ EE LKE E E + + +
Sbjct: 271 DEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIV 313
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 30.2 bits (68), Expect = 1.6
Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 4/176 (2%)
Query: 316 DEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLE 375
+ E + ++L +E E+ E K+ E KRL+ G+ + +
Sbjct: 145 PSEKLET--VAKLLGIDEFEKCYQKMGEIVKEYE-KRLERIEGELNYKEESLKARLKEMS 201
Query: 376 EYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNR 435
++ + + + + DK+ + ++ + K +E +E L +
Sbjct: 202 NLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP-YSFVE 260
Query: 436 RIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPLSELVMKRRNIFQTLDLILG 491
+D E ++ N + +L E L ++ ++ R LD
Sbjct: 261 LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTV 316
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 30.0 bits (67), Expect = 1.9
Identities = 21/185 (11%), Positives = 57/185 (30%), Gaps = 2/185 (1%)
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERA 337
+E+LT++ +I K + + E L E ++ E L +
Sbjct: 107 TVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSDLITGFV 166
Query: 338 GLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQL-ANMLEEYKQNAKDVVYYEDMKDKLEV 396
+E E + ++ D+ + N+ D + +L
Sbjct: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226
Query: 397 ELDKLRMESAEKIKLRDSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDL 456
+ R ++ + + ++ ++E+ ++ L + + Q+
Sbjct: 227 QYVVTR-DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285
Query: 457 KIQEI 461
I ++
Sbjct: 286 LIMKL 290
Score = 28.8 bits (64), Expect = 4.8
Identities = 26/204 (12%), Positives = 80/204 (39%), Gaps = 9/204 (4%)
Query: 126 EEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKE 185
EE++ T + S D ++ + + ++ + +L ++ EL +
Sbjct: 171 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREK---FAELRAQ 227
Query: 186 VDKKDNYIETLLKENEANVKLCKELEKQVHELNIN-KELDRLNHEIIHKDDEIRQNASKI 244
+ I+ + + + +L + + + K+ D L + + D +R I
Sbjct: 228 YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287
Query: 245 KQLMSEIAS-KEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEEL 303
+L E +++ L N N+ + ++ + +E++H+ ++ +++
Sbjct: 288 MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347
Query: 304 IQTRRNEKKLELDEMREEIKRLEE 327
+ E L ++++++ +R+
Sbjct: 348 EE----ETGLTIEQVKDINRRMSI 367
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 30.1 bits (67), Expect = 2.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTE-TIRSLTNKNLELKVQYEEE--IDNRDTRIKEL 139
E + KEF L+ + + +LN+K E + N EL V E E +D D+ +K L
Sbjct: 401 TQFEAVGKEFSNLERRLE-NLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNL 458
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 29.8 bits (67), Expect = 2.3
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 299 EHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIG 358
E L L+E+R ++ +L L E L++K +EI ++K G
Sbjct: 14 GTENLYFQSNAMVNTNLEELRTQVDQLNIDLLE-------LISKRANLVQEIGKIKGTQG 66
Query: 359 KYKMLVQERDQLANML 374
+ ++ N +
Sbjct: 67 SLRFDPLREREMLNTI 82
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.5 bits (67), Expect = 2.5
Identities = 13/116 (11%), Positives = 35/116 (30%), Gaps = 23/116 (19%)
Query: 237 IRQNASKIKQLMS------------EIASKEESMKKLIKQNNELVERLNSVEPRIEVLTK 284
+ + + I S + +++L +Q L E +V + L
Sbjct: 46 LCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105
Query: 285 DIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
+ + + +++ L E+R+++ L + E +
Sbjct: 106 N---QDNSQVQQDPQYQSLRA--------RGREIRKQLTLLYPKEAQLEEQFYLRA 150
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 29.5 bits (67), Expect = 2.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 315 LDEMREEIKRLEEVLKENE 333
+D+M + +K LE + + +
Sbjct: 323 IDDMSKRLKSLERKVNQQD 341
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 29.3 bits (67), Expect = 3.0
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
KL ++ E H + E ++ ++ +++ + ++L + + LL +++ E I
Sbjct: 160 IKLKEIVEYHNFQLVHYYKEAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELI 219
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.1 bits (65), Expect = 3.3
Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 2/174 (1%)
Query: 162 KENEKLSMDLVFKENQEVTELMKEVDKKDNY--IETLLKENEANVKLCKELEKQVHELNI 219
+ + + V E +E+ + L + A +L ++ L++
Sbjct: 4 SKRKNAQAQEAQETEVLVQEEAEELPEFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDL 63
Query: 220 NKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRI 279
+E + L I D +RQ +I Q+ +E + + +++ E +++L+ +
Sbjct: 64 EEEEEDLPIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLD 123
Query: 280 EVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENE 333
L +++ L +T + E+D+ + + + +
Sbjct: 124 PDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIA 177
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 29.4 bits (67), Expect = 3.4
Identities = 5/60 (8%), Positives = 21/60 (35%)
Query: 291 EKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEI 350
++L + + H ++ ++ + + + L+ + + L +E +
Sbjct: 173 DRLRENLDFHNFVLTQYLGGAAVDFQATLDTMLGYADRLRPMVADVSRRLYEENHAGRNL 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.1 bits (66), Expect = 3.9
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 278 RIEVLTK--DIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
R+ T +++ +KL ++ +E + +Q++ EK L R+ +RL E +++ +
Sbjct: 386 RLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASL---RDTEQRLREQVEDTKKS 442
Query: 336 RAGLLTKEKRKDEEIKRLKEEIGK----------YKMLVQERDQLANMLEEYKQ 379
KEK+ E + ++I K+ E D+L NM
Sbjct: 443 W-----KEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHS 491
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 28.9 bits (64), Expect = 4.0
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 84 QHLEKIKKEFKELQEKYQRDLNQKTE-TIRSLTNKNLELKVQYEEE--IDNRDTRIKEL 139
+ +I+KEF E++ + Q DL + E T L + N EL V E + ID D+ + +L
Sbjct: 382 EKFHQIEKEFSEVEGRIQ-DLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKL 439
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 28.7 bits (64), Expect = 4.2
Identities = 33/279 (11%), Positives = 95/279 (34%), Gaps = 24/279 (8%)
Query: 31 NQLLEFEQELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIK 90
L L + ++ + +T + Q ++ + + + +++ Q +
Sbjct: 60 KDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMD 119
Query: 91 KEFKELQEKYQ----RDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEI 146
E ++EK D + +++L K+ L+ E+ + I+ + ++
Sbjct: 120 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE----AELAAHEPAIQGVLDTGKKL 175
Query: 147 DKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKL 206
+ EI++ + + KE+ + L+E+ +
Sbjct: 176 SDDNTIGKEEIQQRL---------------AQFVDHWKELKQLAAARGQRLEESLEYQQF 220
Query: 207 CKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNN 266
+E++ +N K + + I+ K + ++ ++ + +
Sbjct: 221 VANVEEEEAWIN-EKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGE 279
Query: 267 ELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQ 305
+L+++ N I K ++ K L K A + + +
Sbjct: 280 DLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 318
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 29.1 bits (66), Expect = 4.2
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 347 DEEIKRLKEEIGKYKMLVQERDQLANML--EEYKQNA-KDVVYYEDMKDKLEVELDKLRM 403
+E +R ++ + + ++ L +++ A K+VV E + +L+ L++
Sbjct: 799 EEWRRRQEKRLKELL---ALAERSQRKLASPGFREKAPKEVV--EAEEARLKENLEQA-- 851
Query: 404 ESAEKIKLRDSEL 416
E+I+ S++
Sbjct: 852 ---ERIREALSQI 861
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.8 bits (65), Expect = 4.2
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 62 DQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLEL 121
L + + + E+ E + +E+ + ++ + L N ++L
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMER----KELHNTVMDL 57
Query: 122 K 122
+
Sbjct: 58 R 58
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 28.7 bits (64), Expect = 4.6
Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 38 QELRETMKQKDDKLLELAKTARTKDQELRDLRQQTQQSVTKANTCEQHLEKIKKEFKELQ 97
+ T+ + ++ + R + + + +T+A + + I KE K +
Sbjct: 68 NDYVTTLTNIQVGVARFSQWGTCGGEVERWVDKASTHELTQA---VKKIHVIAKELKNVT 124
Query: 98 EKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSD 142
+ ++ + N+ T++K
Sbjct: 125 AELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQVKLSDGM 169
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 28.9 bits (64), Expect = 4.7
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 280 EVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLEL-----DEMREEIKRLEEVLKENEC 334
+K + + +H + + E I+ +++ E+ RLE + N
Sbjct: 871 HTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPN 930
Query: 335 ERAGLLTKEKRKDEEIKRLKEEI 357
R D+E+ ++
Sbjct: 931 IR----------DDELTAIESNR 943
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 28.9 bits (65), Expect = 5.0
Identities = 20/136 (14%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDR------LNHEI 230
++ EL +E+ + + + TL + + + + + + ++ + L ++
Sbjct: 10 EKYLELSEELKQSEKHKGTLDQGASQFLNAIEFVLR------VYRQTEVIYVYAHLKNDQ 63
Query: 231 IHKDDEIRQNASKIKQLMSEIASKEESM-KKLIKQNNELVERLNSVEPRIEVLTKDIQ-I 288
+ + + ++ L S+++ ++++ +++ + + EP++EV IQ I
Sbjct: 64 DTGNTDYQALYARASSLFSKVSEAVSWFEPEILQLSDDQIWQYFKEEPKLEVYRHYIQQI 123
Query: 289 KTEKLHKLAEEHEELI 304
+ H L+ E E L+
Sbjct: 124 VDNRAHVLSAEQESLL 139
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 28.3 bits (63), Expect = 5.1
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 280 EVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKE 331
+ + + + + Q E + ++ E+ +I +E+VLKE
Sbjct: 187 AIFKSKWRHEANTWQNIIQTISN-NQPVSTENQAKIRELEHKIALVEDVLKE 237
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 28.4 bits (63), Expect = 5.1
Identities = 39/304 (12%), Positives = 89/304 (29%), Gaps = 14/304 (4%)
Query: 7 LKFKEWHTKISEAELLVKQIEYKNNQLLEFEQELRETMKQKDDKLLELAKTARTKDQE-L 65
E +L ++ QE +T+ D+L+ + E
Sbjct: 29 AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWK 88
Query: 66 RDLRQQTQQSVTKANTCEQHLEKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQY 125
L + + +T Q L K+ D + I+ K E +
Sbjct: 89 DGLNEAWADLLELIDTRTQILAAS-----YELHKFYHDAKEIFGRIQDKHKKLPEELGRD 143
Query: 126 EEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKE 185
+ ++ D + V + + +L D + K EV E K
Sbjct: 144 QNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKS 203
Query: 186 VDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIK 245
+ L + + + + + + E + + +
Sbjct: 204 LLDACESRRVRLVDTGDKFRFFSMVRDLMLWME-DVIRQIEAQEKPRDVSSVELLMNNHQ 262
Query: 246 QLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQ 305
+ +EI ++ +S I+ L+ R + +++I+ K +L + +E + +
Sbjct: 263 GIKAEIDARNDSFTTCIELGKSLLARKHY-------ASEEIKEKLLQLTEKRKEMIDKWE 315
Query: 306 TRRN 309
R
Sbjct: 316 DRWE 319
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 28.7 bits (65), Expect = 5.7
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLK 330
R+ L D +E+ LA +++ + +++++ +++K E +K
Sbjct: 183 RMCDLVSDFDGFSERFKVLANQYKSI----YPTLEIDIEGELQKLKGYMEKIK 231
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 28.6 bits (63), Expect = 6.3
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 12/191 (6%)
Query: 229 EIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQI 288
+ D R + QL EI + + K + +E+ + + +
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAA--KHEAQRLEQEARGRLERQKILDQSEA 699
Query: 289 KTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDE 348
+ + L E + K E E R E R+E E + L K K +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEA-ESRAEAARIEG-------EGSVLQAKLKAQAL 751
Query: 349 EIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEK 408
I+ E K+ E LE A+ + E K + + L +
Sbjct: 752 AIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVE--AKKFKEMTEALGPGTIRD 809
Query: 409 IKLRDSELDKK 419
+ + E+ K
Sbjct: 810 LAVAGPEMQVK 820
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 28.0 bits (62), Expect = 6.5
Identities = 13/85 (15%), Positives = 37/85 (43%)
Query: 221 KELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIE 280
K+L + + ++ K K+L +E+A+ E +++ ++ +L + + I+
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 281 VLTKDIQIKTEKLHKLAEEHEELIQ 305
++L +LA + ++
Sbjct: 188 QRLAQFVDHWKELKQLAAARGQRLE 212
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.2 bits (62), Expect = 6.8
Identities = 33/194 (17%), Positives = 70/194 (36%), Gaps = 13/194 (6%)
Query: 298 EEHEELIQTRRNEKKLELDEMREEIKRLEE-----VLKENECERAGLLTKEKRKDEEIKR 352
+ I R E +L + E+K+L++ +++ E R + + +R
Sbjct: 11 SQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQER 70
Query: 353 LKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLR 412
+ E + V L + +Q ++ +K + L LR + +
Sbjct: 71 MSRETALQQKQVSLETWLQREAQTLQQYRVELA------EKHQKTLQLLRKQQTIILDDE 124
Query: 413 DSELDKKHEVIAEMKLSMEANNRRIQDLEEQLAENNAWINEQDLKIQEIQRTLLEPIEPL 472
+ K+ + +A E + +Q E+LAE W N Q ++ E L P+
Sbjct: 125 LIQW-KRRQQLAGNGGPPEGSLDVLQSWCEKLAEII-WQNRQQIRRAEHLCQQLPIPGPV 182
Query: 473 SELVMKRRNIFQTL 486
E++ + +
Sbjct: 183 EEMLAEVNATITDI 196
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 28.0 bits (62), Expect = 7.2
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 383 DVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELDKKHE 421
D VY E KL ++++ +++ + +++
Sbjct: 40 DEVYVEYYTSKLLSSIEEMEEFFGKRVVELERSDLEENS 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 28.2 bits (64), Expect = 7.4
Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 ERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRM---ESAE 407
+++ ++ + ++ + +K+ EL++ SAE
Sbjct: 2 DKEGKTGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAE 46
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 28.2 bits (64), Expect = 7.4
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 32/116 (27%)
Query: 237 IRQNASKIKQLM-----------SEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKD 285
IR+ +K+ + ++ ++ +++IK+ L N + +K+
Sbjct: 7 IREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKL-------SKE 59
Query: 286 I-QIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
I ++K E ++ E+ + E++EEI RLEE L++ E E L
Sbjct: 60 IGKLKREG-----KDTTEIQN--------RVKELKEEIDRLEEELRKVEEELKNTL 102
Score = 28.2 bits (64), Expect = 7.6
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 295 KLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGL------LTKE----K 344
L E + ++ R + EL + +++ L++ +E L L+KE K
Sbjct: 5 NLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLK 64
Query: 345 RKDEEIKRLKEEIGKYKMLVQERDQLANMLEE 376
R+ ++ ++ + + K + ++ +EE
Sbjct: 65 REGKDTTEIQNRVKELKEEIDRLEEELRKVEE 96
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 28.2 bits (63), Expect = 8.4
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 319 REEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGK---------YKMLVQERDQ 369
+ ++ + E E + A + +K+ ++R + Y + Q +
Sbjct: 461 KAAVRFILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVR 520
Query: 370 LANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRM--ESAEKIKLRD-SELDKKHEV---- 422
L +++EY + Y+ + L+ L+ L E EK+ RD EL + E+
Sbjct: 521 LQKIMDEYAAGIATI--YKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWELVHRV 578
Query: 423 -IAEM 426
AE
Sbjct: 579 WTAEA 583
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.0 bits (62), Expect = 8.6
Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 13/159 (8%)
Query: 201 EANVKLCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKK 260
L + +H+ L L + I +D I+ +++
Sbjct: 5 IECRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHS-----------ELISKMSTRLER 53
Query: 261 LIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMRE 320
+ + + + P I+ + Q + + + R+
Sbjct: 54 IANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQ 113
Query: 321 EIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEEIGK 359
+ R +L N ++ +E D IK+L E
Sbjct: 114 MLDRK--LLLGNVPKQMTCYIREYHVDRVIKKLDEMCDL 150
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer,
solution structure, contractIle protein; NMR
{Chlamydomonas reinhardtii}
Length = 114
Score = 26.4 bits (58), Expect = 9.2
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 302 ELIQTRRNEKKLELDEMREEIKR-LEEVLKENEC--ERAGLLTKEKRKDEEIKRLKEEIG 358
E + E D++ IK ++ VL+ + + T + IKRL
Sbjct: 2 EGVDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSC-LEHCIKRLTALNK 60
Query: 359 KYKMLVQ 365
+K +V
Sbjct: 61 PFKYVVT 67
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.9 bits (63), Expect = 9.2
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 282 LTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKEN----ECERA 337
+ K+I+ ++ E + K+ E ++ ++++E +KE + ERA
Sbjct: 588 INKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERA 647
Query: 338 GLLTKEKRKDEEIKRLKEE 356
L R + + LK E
Sbjct: 648 AEL----R--DLLLELKAE 660
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 27.9 bits (60), Expect = 9.7
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 3/170 (1%)
Query: 97 QEKYQRDLNQKTETIRSLTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAE 156
+ YQ L + + N + K YE + + LT++ + I K + A+
Sbjct: 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKAD 63
Query: 157 IEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHE 216
E + + + K+ + +K + + I+ L E E + L + +
Sbjct: 64 YEAKLAKYQA-DLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQ 122
Query: 217 LNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNN 266
+ N + D AS + S+ SK + +K+++ ++
Sbjct: 123 NLVYD--LEPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDD 170
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 27.4 bits (60), Expect = 10.0
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 279 IEVLTK--DIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEE 327
+ L D++I +L + A + + ++ E E+ E ++ LEE
Sbjct: 199 LNRLEDLIDVRIPLGELPEDARAWQVGV----DQLAAEDSEVAEYVQSLEE 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.325
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,049,061
Number of extensions: 444589
Number of successful extensions: 3048
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 758
Length of query: 495
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 398
Effective length of database: 3,993,456
Effective search space: 1589395488
Effective search space used: 1589395488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.2 bits)