RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy444
(495 letters)
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 34.0 bits (76), Expect = 0.036
Identities = 10/94 (10%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 358 GKYKMLVQERDQLANMLEEYKQNAKDVVYYEDMKDKLEVELDKLRMESAEKIKLRDSELD 417
+K + + + L + + E+ L +
Sbjct: 440 SIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYVTHHDPPLLFDISKDPRERNPLTPASEP 499
Query: 418 KKHEVIAEMKLSMEANNRRIQDLEEQLAENN-AW 450
+ +E++ M+ + + + + + ++ +Q + NN W
Sbjct: 500 RFYEILKVMQEAADRHTQTLPEVPDQFSWNNFLW 533
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 32.3 bits (72), Expect = 0.12
Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 218 NINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEP 277
L + E ++ +++ + E S EE+ ++ L + + P
Sbjct: 279 ANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVG-IPP 337
Query: 278 RIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMRE 320
+ +D+ ++ E + LA+ + + T N ++ L+++ E
Sbjct: 338 HL----RDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVE 376
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 31.0 bits (69), Expect = 0.41
Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 271 RLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLK 330
RL + R + +++ +Q + EK + + +I+ + + +E++ L +
Sbjct: 583 RLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFP-R 641
Query: 331 ENECERAGLLTKEKRKDEEIKRLKEEIGKYKMLVQERDQLANMLEEYKQNAKDVVYYEDM 390
N+ + + E+I +K + + N++ ++ Y M
Sbjct: 642 FNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGM 701
Query: 391 ---------KDKLEVELDKLRMESAEKIKLRDSELDKK 419
KL + + E +KL ++
Sbjct: 702 RIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNT 739
Score = 29.8 bits (66), Expect = 0.84
Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 21/193 (10%)
Query: 146 IDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEVTELMKEVDKKDNYIETLLKENEANVK 205
++ RKD E+L E EK S + F + EL ++ I+ L+
Sbjct: 584 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQ-ELENLGFPRF 642
Query: 206 LCKELEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQN 265
+ + E +++ + + +++ + + L+
Sbjct: 643 NKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLL--- 699
Query: 266 NELVERLNSVEPRIEVLTKDIQIKTEKLHKLAEEHEELIQTRRN-EKKLELDEMREEIKR 324
RI LTK E+ KL ++ +E N K D ++K
Sbjct: 700 ----------GMRIWSLTK------ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKA 743
Query: 325 LEEVLKENECERA 337
E +E A
Sbjct: 744 FEVGYQEFLQRDA 756
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 30.1 bits (67), Expect = 0.71
Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNH-EIIHKDD 235
+ EL+++ + + + T E+ + K L + + L+ + +
Sbjct: 12 ERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYT--VQRNILDFPQHVSPSK 69
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKTEKLHK 295
+IR +++ + +SE + + ++ +R+ ++ +++ + + +
Sbjct: 70 DIRTASTEADKKLSEFDVE-------MSMREDVYQRIVWLQEKVQKDSLR-----PEAAR 117
Query: 296 LAEEHEELIQTRRNEKKLELDEMREEIKRLEEVLKENECE 335
E + RRN L E +E IKR+++ L +
Sbjct: 118 YLE--RLIKLGRRNGLHLP-RETQENIKRIKKKLSLLCID 154
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 29.7 bits (65), Expect = 0.98
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 222 ELDRLNHEIIHKDDEIRQNASKIKQL----MSEIASKEESMKKLIKQ 264
E+++ +++ KD + + ++K++ + + S S+ KLI
Sbjct: 412 EIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 458
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 29.2 bits (64), Expect = 1.1
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 12/50 (24%)
Query: 307 RRNEKKLELDEMREEIKRLEEVLKENECERAGLLTKEKRKDEEIKRLKEE 356
+N E+ +++ + +E K DEE++ +++E
Sbjct: 327 SKNVSSKEVARLKKLVSYWKEQA------------GRKGDDEELEEIQDE 364
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 28.0 bits (62), Expect = 2.7
Identities = 45/259 (17%), Positives = 99/259 (38%), Gaps = 34/259 (13%)
Query: 122 KVQYEEEIDN--RDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDLVFKENQEV 179
K + E+I ++ R++ +++ E DK R E+ K E + +L + +V
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV-KRDAVGEVVLNNLYSQTQLQV 299
Query: 180 TELMKEVDKKDNYIETL-LKE-NEANVKLCKELEKQVHELNINKELDRLN--------HE 229
+ + V + + LK+ A V+ +E+ + + K DR +
Sbjct: 300 SFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 359
Query: 230 IIHKDDEIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIK 289
I E+ ++A + + + + + ++ER R E L + ++
Sbjct: 360 NIDPIIELIRHAPTPAEAKTAL----VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR 415
Query: 290 TEKLHKLAEEHEE---------LIQTRRNEKKLELDEMREEIKRLEEVLKENECERAGLL 340
+ L+ L E+ + L + E E+ ++I L +L + L
Sbjct: 416 -DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD-----RL 469
Query: 341 TKEKRKDEEIKRLKEEIGK 359
+ R EE++ ++E+ G
Sbjct: 470 MEVIR--EELELVREQFGD 486
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 28.2 bits (62), Expect = 3.1
Identities = 17/150 (11%), Positives = 53/150 (35%), Gaps = 16/150 (10%)
Query: 177 QEVTELMKEVDKKDNYIETLLKENEANVKLCKELEKQVHELNINKELDRLNH-EIIHKDD 235
+L+ + + + + T+ + + L E L+ + + D
Sbjct: 23 TRTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYI--VERTMLDFPQHVSSDR 80
Query: 236 EIRQNASKIKQLMSEIASKEESMKKLIKQNNELVERLNSVEPRIEVLTKDIQIKT--EKL 293
E+R +++ + +S + + ++ +R+ ++ ++ + + EK
Sbjct: 81 EVRAASTEADKKLSRFDIE-------MSMREDVFQRIVHLQETCDLEKIKPEARRYLEKS 133
Query: 294 HKLAEEH----EELIQTRRNEKKLELDEMR 319
K+ + + E I+ K + E+
Sbjct: 134 IKMGKRNGLHLSEHIRNEIKSMKKRMSELC 163
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 27.2 bits (60), Expect = 3.7
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 210 LEKQVHELNINKELDRLNHEIIHKDDEIRQNASKIK 245
LE V+ + E+ +D + + KI
Sbjct: 36 LEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKIT 71
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 27.3 bits (60), Expect = 3.9
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 69 RQQTQQSVTKANTCEQHL----EKIKKEFKELQEKYQRDLNQKTETIRSLTNKNLELKVQ 124
+Q S + ++ + ++ L D + +T +N + ++
Sbjct: 170 KQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 229
Query: 125 YEEEIDNRDTRIKE 138
E EID + E
Sbjct: 230 TEAEIDAHLVALAE 243
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens
[TaxId: 1502]}
Length = 471
Score = 26.7 bits (59), Expect = 6.6
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 114 LTNKNLELKVQYEEEIDNRDTRIKELTSDTSEIDKIVSRKDAEIEKLSKENEKLSMDL-- 171
+ N +++ QY++ +N L D E +K+V++ EI K+ K+N S
Sbjct: 269 IKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPA 328
Query: 172 --------VFKENQEVTELMKEVDKKDNYIET 195
K+N V K +YIET
Sbjct: 329 YPISYTSVFLKDNSVAA-----VHNKTDYIET 355
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.128 0.325
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,706,079
Number of extensions: 86575
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 246
Length of query: 495
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,185,626
Effective search space: 481364156
Effective search space used: 481364156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.1 bits)