BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4440
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 16/130 (12%)
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
+ Y V +A+ LD+V ++++D+ G W+ TGH +PLY+ Q++ + + V
Sbjct: 172 AGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNV--------- 222
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
++ + W+ KG PA K+I+GMP Y ++F LA S+ + A G G PGPFT+
Sbjct: 223 -------DAAVQQWLEKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTK 275
Query: 172 SPGFMAYYEV 181
G +AYYEV
Sbjct: 276 EGGMLAYYEV 285
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 40/171 (23%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
+L LSA V QT +D + Y V +A+ LD+V +++
Sbjct: 155 ERLLLSAAVPAGQTYVD------------------------AGYEVDKIAQNLDFVNLMA 190
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W+ TGH +PLY+ Q++ + + V ++ + W+ KG
Sbjct: 191 YDFHGSWEKVTGHNSPLYKRQEESGAAASLNV----------------DAAVQQWLQKGT 234
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K+I+GMP Y ++F LA S+ + A G G PGPFT+ G +AYYEV
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV 285
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 40/171 (23%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
+L LSA V QT +D + Y V +A+ LD+V +++
Sbjct: 155 ERLLLSAAVPAGQTYVD------------------------AGYEVDKIAQNLDFVNLMA 190
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W+ TGH +PLY+ Q++ + + V ++ + W+ KG
Sbjct: 191 YDFHGSWEKVTGHNSPLYKRQEESGAAASLNV----------------DAAVQQWLQKGT 234
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K+I+GMP Y ++F LA S+ + A G G PGPFT+ G +AYYEV
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV 285
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 40/171 (23%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
+L LSA V QT +D + Y V +A+ LD+V +++
Sbjct: 155 ERLLLSAAVPAGQTYVD------------------------AGYEVDKIAQNLDFVNLMA 190
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W+ TGH +PLY+ Q+ QS +++ + W+ KG
Sbjct: 191 YDFHGSWEKVTGHNSPLYKRQE----------------QSGAAASLNVDAAVQQWLQKGT 234
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K+I+GMP Y ++F LA S+ + A G G PGPFT+ G +AYYEV
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEV 285
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 16/130 (12%)
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
+ Y V +A+ LD+V ++++D+ G W+ TGH +PLY+ Q+ QS
Sbjct: 172 AGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE----------------QSG 215
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
+++ + W+ KG PA K+I+GMP Y ++F LA S+ + A G G PGPFT+
Sbjct: 216 AAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTK 275
Query: 172 SPGFMAYYEV 181
G +AYYEV
Sbjct: 276 EGGMLAYYEV 285
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 41/171 (23%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
+QL LSA +S + ID SSY++ ++++LD++++++
Sbjct: 149 KQLLLSAALSAGKVTID------------------------SSYDIAKISQHLDFISIMT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W G TGH +PL++ Q+D + D + + Y + G
Sbjct: 185 YDFHGAWRGTTGHHSPLFRGQED----------------ASPDRFSNTDYAVGYMLRLGA 228
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + ++F LA S + G+ A GPG+PG FT+ G +AYYE+
Sbjct: 229 PASKLVMGIPTFGRSFTLASSET-GVGAPISGPGIPGRFTKEAGTLAYYEI 278
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 19/134 (14%)
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDG--ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQ 109
+SY V+ LAK LD++ +LSFD+ G W+ TGH +PL + D+ S
Sbjct: 168 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPS------------ 215
Query: 110 SHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPF 169
+++ + + YWI KGMP+ KV+MG+P Y +F LA + + + A GPG GP
Sbjct: 216 ----SYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPASGPGAAGPI 270
Query: 170 TQSPGFMAYYEVSH 183
T+S GF+AYYE+
Sbjct: 271 TESSGFLAYYEICQ 284
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 16/134 (11%)
Query: 48 SSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRC 107
S+ S Y + L++YLD++ V+++D G W+G TG +PLY+ P
Sbjct: 168 SNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYK------------YPTDTG 215
Query: 108 SQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPG 167
S ++++ +++N YW G PA K+I+G P Y FIL++ ++ G+ A T G G G
Sbjct: 216 SNAYLNVDYVMN----YWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAG 271
Query: 168 PFTQSPGFMAYYEV 181
P+ + G AYYE+
Sbjct: 272 PYAKESGIWAYYEI 285
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 16/134 (11%)
Query: 48 SSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRC 107
S+ S Y + L++YLD++ V+++D G W+G TG +PLY+ P
Sbjct: 172 SNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYK------------YPTDTG 219
Query: 108 SQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPG 167
S ++++ +++N YW G PA K+I+G P Y FIL++ ++ G+ A T G G G
Sbjct: 220 SNAYLNVDYVMN----YWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAG 275
Query: 168 PFTQSPGFMAYYEV 181
P+ + G AYYE+
Sbjct: 276 PYAKESGIWAYYEI 289
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 42/171 (24%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
QL LSA VS + ID+ Y++ ++++LD+ +++L+
Sbjct: 149 EQLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W GH +PL++ Q+D + S N + ++Y + G
Sbjct: 185 YDFHGAWRQTVGHHSPLFRGQED--------------ASSRFSN---ADYAVSYMLRLGA 227
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + ++F LA S + + A GPG+PG FT+ G +AYYE+
Sbjct: 228 PANKLVMGIPTFGKSFTLASSKTD-VGAPVSGPGIPGQFTKEKGILAYYEI 277
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 42/171 (24%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
QL LSA VS + ID+ Y++ ++++LD+ +++L+
Sbjct: 149 EQLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W GH +PL++ +D + S N + ++Y + G
Sbjct: 185 YDFHGAWRQTVGHHSPLFRGNED--------------ASSRFSN---ADYAVSYMLRLGA 227
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + ++F LA S + + A GPG+PG FT+ G +AYYE+
Sbjct: 228 PANKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGIPGRFTKEKGILAYYEI 277
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 42/170 (24%)
Query: 12 QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSF 71
+L LSA VS + ID+ Y++ ++++LD+ +++L++
Sbjct: 150 RLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLTY 185
Query: 72 DYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMP 131
D+ G W GH +PL++ D + S N + ++Y + G P
Sbjct: 186 DFHGAWRQTVGHHSPLFRGNSD--------------ASSRFSN---ADYAVSYMLRLGAP 228
Query: 132 ARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
A K++MG+P + ++F LA S + G A GPG+PG FT+ G +AYYE+
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEI 277
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 42/171 (24%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
QL LSA V+ + ID+ Y++ ++++LD+ +++L+
Sbjct: 149 EQLLLSAAVTAGKIAIDRGYDIAQISRHLDF------------------------ISLLT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W G GH +PL++ D S N + ++Y + G
Sbjct: 185 YDFHGGWRGTVGHHSPLFRGNSD--------------GSSRFSN---ADYAVSYMLRLGA 227
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + +++ LA S++ + A GPG+PG FT+ G +AYYE+
Sbjct: 228 PANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEI 277
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 42/170 (24%)
Query: 12 QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSF 71
+L LSA VS + ID+ Y++ ++++LD+ +++L++
Sbjct: 150 RLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLTY 185
Query: 72 DYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMP 131
D+ G W GH +PL++ D S N + ++Y + G P
Sbjct: 186 DFHGAWRQTVGHHSPLFRGNSD--------------GSSRFSN---ADYAVSYMLRLGAP 228
Query: 132 ARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
A K++MG+P + ++F LA S + G A GPG+PG FT+ G +AYYE+
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEI 277
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 42/171 (24%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
QL LSA VS + ID+ Y++ ++++LD+ +++L+
Sbjct: 149 EQLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W GH +PL+ +D + S N + ++Y + G
Sbjct: 185 YDFHGAWRQTVGHHSPLFAGNED--------------ASSRFSN---ADYAVSYMLRLGA 227
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + ++F LA S + + A GPG+PG FT+ G +AYYE+
Sbjct: 228 PANKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGVPGRFTKEKGILAYYEI 277
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 42/170 (24%)
Query: 12 QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSF 71
+L LSA VS + ID+ Y++ ++++LD+ +++L++
Sbjct: 150 RLLLSAAVSAGKIAIDRGYDIAQISRHLDF------------------------ISLLTY 185
Query: 72 DYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMP 131
D+ G W GH +PL++ D + S N + ++Y + G P
Sbjct: 186 DFHGAWRQTVGHHSPLFRGNSD--------------ASSRFSN---ADYAVSYMLRLGAP 228
Query: 132 ARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
A K++MG+P + ++F LA S + + A GPG+PG FT+ G +AYYE+
Sbjct: 229 ANKLVMGIPTFGRSFTLASSKTD-VGAPISGPGIPGRFTKEKGILAYYEI 277
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 18/129 (13%)
Query: 53 SYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
Y++ ++++LD++++L++D+ G W G GH +PL++ D S
Sbjct: 167 GYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSD--------------GSSRF 212
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQS 172
N + ++Y + G PA K++MG+P + +++ LA S + + A GPG+PG FT+
Sbjct: 213 SN---ADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGQFTKE 268
Query: 173 PGFMAYYEV 181
G +AYYE+
Sbjct: 269 KGTLAYYEI 277
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
S Y + L++ LD++ V+++D DG TG +PLY+S D S + V
Sbjct: 172 SGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNV--------- 222
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
+S I+YW G + K+I+G P Y TFIL+D + G+ A T+ G PG +T
Sbjct: 223 -------DSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTD 275
Query: 172 SPGFMAYYEV 181
G +AYYEV
Sbjct: 276 ESGLLAYYEV 285
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 42/171 (24%)
Query: 11 RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLS 70
QL LSA V+ + ID+ Y++ ++++LD++ ++L+
Sbjct: 149 EQLLLSAAVTAGKIAIDRGYDIAQISRHLDFI------------------------SLLT 184
Query: 71 FDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM 130
+D+ G W GH +PL++ +D + S N + ++Y + G
Sbjct: 185 YDFHGAWRQTVGHHSPLFRGNED--------------ASSRFSN---ADYAVSYMLRLGA 227
Query: 131 PARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
PA K++MG+P + +++ LA S + + A GPG+PG FT+ G +AYYE+
Sbjct: 228 PANKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGRFTKWKGILAYYEI 277
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 53 SYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
+Y V+SLA+ LDW+ ++++D+ G P + H+ PV
Sbjct: 166 NYPVESLARNLDWINLMAYDFYG----------PNWSPSQTNSHA-QLFDPV-------- 206
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQS 172
NH + IN WI G+P +K+++G+P Y + L ++N HGL A G G
Sbjct: 207 -NHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD- 264
Query: 173 PGFMAY-----YEVSHRQTT 187
G M Y Y V R TT
Sbjct: 265 -GSMTYNRIRDYIVESRATT 283
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 53 SYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
+Y V+SLA+ LDW+ ++++D+ G P + H+ PV
Sbjct: 166 NYPVESLARNLDWINLMAYDFYG----------PNWSPSQTNSHA-QLFDPV-------- 206
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQS 172
NH + IN WI G+P +K+++G+P Y + L ++N HGL A G G
Sbjct: 207 -NHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD- 264
Query: 173 PGFMAY-----YEVSHRQTT 187
G M Y Y V R TT
Sbjct: 265 -GSMTYNRIRDYIVESRATT 283
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQS 110
Y+ + + KYLD+ ++++D+SG WD +GH++ ++ S T P S
Sbjct: 184 YNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPS---------TTKPESTPFSS 234
Query: 111 HIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVG 162
+ + +I G+PA K+++GMPLY + F D N + G
Sbjct: 235 --------DKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGG 278
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQS 110
Y+ + + KYLD+ ++++D+SG WD +GH++ ++ S T P S
Sbjct: 184 YNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPS---------TTKPESTPFSS 234
Query: 111 HIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVG 162
+ + +I G+PA K+++GMPLY + F D N + G
Sbjct: 235 --------DKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGG 278
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQS 110
Y+ + + KYLD+ ++++D+SG WD +GH++ ++ S T P S
Sbjct: 184 YNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPS---------TTKPESTPFSS 234
Query: 111 HIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVG 162
+ + +I G+PA K+++GMPLY + F D N + G
Sbjct: 235 --------DKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGG 278
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 31/118 (26%)
Query: 52 SSYNVKSLAKY---LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
S YNV LA+ LD + ++++DY+G WD +GH LY S + + P
Sbjct: 200 SHYNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNP-----SSTPFS--- 251
Query: 109 QSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLP 166
+ ++ +I+ G+PA K+I+GMP+Y + F+ D GPG P
Sbjct: 252 ---------TKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD-----------GPGKP 289
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 54 YNVKSLAKYLDWVTVLSFDYSG-YWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
Y V ++A LDWV ++++D+ G W TG A L+ +
Sbjct: 168 YPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSG--------------- 212
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGL 165
++ WI G+PA+K ++G P Y + L ++NSH A T G +
Sbjct: 213 ------DAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAI 259
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 42 VTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTI 101
+TVL ++ +++ +L +D+V + +FD+ + P ++ Y +
Sbjct: 193 LTVLPNVNSTWYFDIPALNGLVDFVNLATFDF----------LTPARNPEEADYSA---- 238
Query: 102 VPVCRCSQSHIDNHHL-LNSNINYWISKGMPARKVIMGMPLYAQTFILA-DSNSHGLNAL 159
P+ S HL + + YW+S+G P+ K+ +G+ Y + L DS G+ +
Sbjct: 239 -PIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVV 297
Query: 160 --TVGPGLPGPFTQSPGFMAYYEVSHRQTTP 188
T GP G +Q PG ++Y E+ + + P
Sbjct: 298 PETSGPAPEGFQSQKPGLLSYAEICGKLSNP 328
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 37 KYLDWVTVLLKSSAYSSYNVK--SLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ 94
KYL +T+ +SA + N + +A +DW+ ++++D++G W + H APL
Sbjct: 213 KYL--LTIASGASATYAANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAAS 270
Query: 95 YHSV---NTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
V NT V +Q H+D G+PA K+++G+P Y + +
Sbjct: 271 AAGVPDANTF-NVAAGAQGHLD--------------AGVPAAKLVLGVPFYGRGW 310
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 28/111 (25%)
Query: 56 VKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNH 115
+K + + LD+ ++++DY+G + +GH A +Y +T P+ +
Sbjct: 192 LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYN---------DTSNPLSTPFNTQ---- 238
Query: 116 HLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLP 166
+ ++ + + G+PA K+++GMPLY ++F A T GPG P
Sbjct: 239 ----TALDLYRAGGVPANKIVLGMPLYGRSF-----------ANTDGPGKP 274
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 28/111 (25%)
Query: 56 VKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNH 115
+K + + LD+ ++++DY+G + +GH A +Y +T P+ +
Sbjct: 230 LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYN---------DTSNPLSTPFNTQ---- 276
Query: 116 HLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLP 166
+ ++ + + G+PA K+++GMPLY ++F A T GPG P
Sbjct: 277 ----TALDLYRAGGVPANKIVLGMPLYGRSF-----------ANTDGPGKP 312
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNH----- 115
+Y+D++ +++D+ G W+ GH LY + + +C +D +
Sbjct: 360 QYMDYIFAMTYDFYGGWNNVPGHQTALY---------CGSFMRPGQCDGGGVDENGEPYK 410
Query: 116 ---HLLNSNINYWISKGMPARKVIMGMPLYAQ 144
+ ++ I +++G+PA K+++G +Y +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGR 442
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNH----- 115
+Y+D++ +++D+ G W+ GH LY + + +C +D +
Sbjct: 360 QYMDYIFAMTYDFYGGWNNVPGHQTALY---------CGSFMRPGQCDGGGVDENGEPYK 410
Query: 116 ---HLLNSNINYWISKGMPARKVIMGMPLYAQ 144
+ ++ I +++G+PA K+++G +Y +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGR 442
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNH----- 115
+Y+D++ +++D+ G W+ GH LY + + +C +D +
Sbjct: 360 QYMDYIFAMTYDFYGGWNNVPGHQTALY---------CGSFMRPGQCDGGGVDENGEPYK 410
Query: 116 ---HLLNSNINYWISKGMPARKVIMGMPLYAQ 144
+ ++ I +++G+PA K+++G +Y +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGR 442
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPG 167
NH++LN N +WI+ G A +I +YA+T + A S G+ A V G+PG
Sbjct: 156 NHYILNGN-KFWITNGPDADVLI----VYAKTDLAAVPASRGITAFIVEKGMPG 204
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 205 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 264
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 265 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 295
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 63 LDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQ--YHSVNTI--------------VPVCR 106
LD++ ++++D +G W+ T H A L+ Y+++ P
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSL 265
Query: 107 CSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ + H ++ +G+P+ K++MG+P Y + F
Sbjct: 266 TVDAAVQQHLMM---------EGVPSAKIVMGVPFYGRAF 296
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 39 LDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSV 98
LDWV ++ + + V AK+ VT +F+ D A G + PL + +
Sbjct: 290 LDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKR-DFAEGKLHPLDLKNAVAEYLI 348
Query: 99 NTIVPVCRCSQSHIDNHHLLNS 120
N + P+ R + H + L+ S
Sbjct: 349 NLLEPIRRYFEKHPEPLELMRS 370
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 28.1 bits (61), Expect = 3.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 42 VTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDY-SGYWDGATGHVAPLYQSQDDQYHSVNT 100
+ VL +S ++Y K +A +L + D WD T AP +S +++ + N
Sbjct: 319 ILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANI 378
Query: 101 IVPVCRCSQSH 111
++ V Q H
Sbjct: 379 VINVIGAEQKH 389
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 118 LNSNINYWISKGMPARKVIMGMPLYAQTFIL 148
+ I + I++ +P+RK+I+G+PLY +I+
Sbjct: 201 IRRTIEFTIAQ-VPSRKIIIGVPLYGYDWII 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,949,384
Number of Sequences: 62578
Number of extensions: 234361
Number of successful extensions: 683
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 75
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)