Query psy4440
Match_columns 189
No_of_seqs 158 out of 1152
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:06:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 4.3E-32 9.2E-37 239.6 12.3 145 1-185 140-286 (362)
2 cd02873 GH18_IDGF The IDGF's ( 100.0 4.9E-31 1.1E-35 238.4 13.1 143 1-187 175-322 (413)
3 smart00636 Glyco_18 Glycosyl h 100.0 8.1E-31 1.8E-35 228.5 11.2 142 1-185 132-279 (334)
4 cd02878 GH18_zymocin_alpha Zym 100.0 4.7E-29 1E-33 220.4 12.1 144 1-185 141-287 (345)
5 KOG2806|consensus 100.0 1.7E-28 3.6E-33 223.2 10.1 144 1-187 188-342 (432)
6 cd02875 GH18_chitobiase Chitob 99.9 2E-25 4.4E-30 198.5 10.6 131 1-187 138-280 (358)
7 cd06548 GH18_chitinase The GH1 99.9 2.9E-25 6.2E-30 194.2 7.7 105 1-148 158-268 (322)
8 COG3325 ChiA Chitinase [Carboh 99.9 9.6E-25 2.1E-29 195.8 7.3 119 1-153 200-324 (441)
9 cd02879 GH18_plant_chitinase_c 99.9 1.3E-24 2.7E-29 188.9 7.7 103 1-149 132-246 (299)
10 PF00704 Glyco_hydro_18: Glyco 99.9 3.8E-24 8.3E-29 185.3 10.1 140 1-186 142-286 (343)
11 cd02876 GH18_SI-CLP Stabilin-1 99.9 7.7E-23 1.7E-27 178.4 6.3 101 1-150 136-237 (318)
12 cd02874 GH18_CFLE_spore_hydrol 99.9 7.7E-22 1.7E-26 171.4 7.5 121 1-187 126-246 (313)
13 cd06545 GH18_3CO4_chitinase Th 99.8 2.3E-20 5.1E-25 158.1 6.5 91 1-147 121-213 (253)
14 cd06549 GH18_trifunctional GH1 99.8 3.2E-19 6.9E-24 154.9 6.9 92 1-150 127-218 (298)
15 COG3858 Predicted glycosyl hyd 99.6 3E-15 6.4E-20 134.5 6.0 102 1-151 230-331 (423)
16 KOG2091|consensus 98.9 5.9E-10 1.3E-14 97.7 3.3 98 2-148 210-308 (392)
17 cd06544 GH18_narbonin Narbonin 98.7 2E-08 4.4E-13 86.0 5.4 88 1-147 135-222 (253)
18 cd00598 GH18_chitinase-like Th 98.4 3.4E-07 7.4E-12 74.2 3.9 48 1-72 130-177 (210)
19 cd02871 GH18_chitinase_D-like 98.4 7.7E-07 1.7E-11 77.9 6.2 61 1-77 138-199 (312)
20 cd06542 GH18_EndoS-like Endo-b 98.2 1.2E-06 2.6E-11 74.0 2.8 77 1-146 134-210 (255)
21 cd06546 GH18_CTS3_chitinase GH 98.0 8.8E-06 1.9E-10 69.7 5.6 80 1-141 133-217 (256)
22 cd02877 GH18_hevamine_XipI_cla 97.6 0.00012 2.6E-09 63.6 6.4 84 1-143 141-230 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 97.6 5.3E-05 1.2E-09 66.3 3.8 50 1-76 130-184 (294)
24 PF02638 DUF187: Glycosyl hydr 76.7 3 6.4E-05 36.8 3.6 28 118-145 272-300 (311)
25 COG3469 Chitinase [Carbohydrat 74.2 3.3 7.2E-05 36.3 3.1 60 58-141 197-266 (332)
26 KOG1552|consensus 72.7 5.8 0.00013 34.4 4.3 12 65-76 88-99 (258)
27 PF11340 DUF3142: Protein of u 69.9 17 0.00036 30.0 6.2 44 1-71 64-107 (181)
28 PF13200 DUF4015: Putative gly 54.8 11 0.00025 33.5 2.8 52 1-72 176-227 (316)
29 PF08869 XisI: XisI protein; 53.4 7.6 0.00016 29.5 1.3 20 120-139 78-97 (111)
30 TIGR01689 EcbF-BcbF capsule bi 22.3 1E+02 0.0022 23.6 3.1 54 118-186 66-120 (126)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.97 E-value=4.3e-32 Score=239.63 Aligned_cols=145 Identities=41% Similarity=0.858 Sum_probs=128.0
Q ss_pred ChhHHhhcCCC--CcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCC
Q psy4440 1 MKELSFAFKPR--QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWD 78 (189)
Q Consensus 1 lkeLr~al~~~--~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~ 78 (189)
|+|||++|++. +++||++||+.+......||++.|. ++||+|||||||+||+|+
T Consensus 140 l~~lr~~l~~~~~~~~ls~av~~~~~~~~~~~d~~~l~------------------------~~vD~v~vmtYD~~~~~~ 195 (362)
T cd02872 140 LKELREAFEPEAPRLLLTAAVSAGKETIDAAYDIPEIS------------------------KYLDFINVMTYDFHGSWE 195 (362)
T ss_pred HHHHHHHHHhhCcCeEEEEEecCChHHHhhcCCHHHHh------------------------hhcceEEEecccCCCCCC
Confidence 58999999987 8999999999876555567777666 999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCCCCCC
Q psy4440 79 GATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNA 158 (189)
Q Consensus 79 ~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~ 158 (189)
+.+||+|||++.+.++.. ...++++.+|++|+++|+|++||+||||||||.|++++..++++++
T Consensus 196 ~~~g~~spl~~~~~~~~~----------------~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~ 259 (362)
T cd02872 196 GVTGHNSPLYAGSADTGD----------------QKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRSFTLASPSNTGVGA 259 (362)
T ss_pred CCCCCCCCCCCCCCCccc----------------cccccHHHHHHHHHHcCCCHHHeEeccccccceeeecCCccCCCCC
Confidence 999999999986654321 1123499999999999999999999999999999999888899999
Q ss_pred cccCCCCCCCCCCCCcceeHHHHHhhc
Q psy4440 159 LTVGPGLPGPFTQSPGFMAYYEVSHRQ 185 (189)
Q Consensus 159 ~~~g~g~~g~~t~~~G~~~Y~eIc~~l 185 (189)
|+.|+|.+|.++.++|+++|.|||+++
T Consensus 260 ~~~g~~~~g~~~~~~g~~~y~ei~~~~ 286 (362)
T cd02872 260 PASGPGTAGPYTREAGFLAYYEICEFL 286 (362)
T ss_pred ccCCCCCCCCCcCCCccchHHHHHHhh
Confidence 999999999999999999999999987
No 2
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.97 E-value=4.9e-31 Score=238.38 Aligned_cols=143 Identities=27% Similarity=0.545 Sum_probs=117.2
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCC-
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDG- 79 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~- 79 (189)
|+|||++|++++++|+++|++.... ...||+++|+ ++|||||||||||||+|..
T Consensus 175 l~elr~~l~~~~~~ls~av~~~~~~-~~~~d~~~l~------------------------~~vD~inlMtYD~~g~~~~~ 229 (413)
T cd02873 175 VRELKNALRPDGLLLTLTVLPHVNS-TWYFDVPAIA------------------------NNVDFVNLATFDFLTPERNP 229 (413)
T ss_pred HHHHHHHhcccCcEEEEEecCCchh-ccccCHHHHh------------------------hcCCEEEEEEecccCCCCCC
Confidence 5899999999999999999765332 2235655555 9999999999999999865
Q ss_pred -CCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCC-CCCCC
Q psy4440 80 -ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSN-SHGLN 157 (189)
Q Consensus 80 -~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~-~~~~~ 157 (189)
.++|+|||+..... ...+| ++.+|++|+++|+|++|||||||||||+|+++++. ..+.+
T Consensus 230 ~~~~~~apL~~~~~~-~~~~~------------------v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~ 290 (413)
T cd02873 230 EEADYTAPIYELYER-NPHHN------------------VDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVP 290 (413)
T ss_pred CccCcCCccCCCccc-ccccc------------------HHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCC
Confidence 58999999975422 12234 99999999999999999999999999999998653 33433
Q ss_pred --CcccCCCCCCCCCCCCcceeHHHHHhhccC
Q psy4440 158 --ALTVGPGLPGPFTQSPGFMAYYEVSHRQTT 187 (189)
Q Consensus 158 --~~~~g~g~~g~~t~~~G~~~Y~eIc~~l~~ 187 (189)
+++.|++.+|++++++|+++|.|||++++.
T Consensus 291 ~~~~~~g~~~~G~~~~~~g~l~y~ei~~~~~~ 322 (413)
T cd02873 291 PVLETDGPGPAGPQTKTPGLLSWPEICSKLPN 322 (413)
T ss_pred CCccCCCCCCCCCCcCCCccccHHHHHHhhcc
Confidence 578899999999999999999999998754
No 3
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.97 E-value=8.1e-31 Score=228.54 Aligned_cols=142 Identities=32% Similarity=0.679 Sum_probs=125.7
Q ss_pred ChhHHhhcCC-----CCcEEEEEeCCCcchhhhhhc-hhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCC
Q psy4440 1 MKELSFAFKP-----RQLSLSAVVSPSQTIIDQAYN-VKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYS 74 (189)
Q Consensus 1 lkeLr~al~~-----~~~~Ls~av~~~~~~~~~~y~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~ 74 (189)
|+|||++|++ ++++||+++|+.+...+..|+ ++.|+ +++|+||||+||+|
T Consensus 132 l~~lr~~l~~~~~~~~~~~lsi~v~~~~~~~~~~~~~~~~l~------------------------~~vD~v~vm~YD~~ 187 (334)
T smart00636 132 LKELREALDKEGAEGKGYLLTIAVPAGPDKIDKGYGDLPAIA------------------------KYLDFINLMTYDFH 187 (334)
T ss_pred HHHHHHHHHHhcccCCceEEEEEecCChHHHHhhhhhHHHHH------------------------hhCcEEEEeeeccC
Confidence 5799999985 589999999998766555566 36665 99999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCC
Q psy4440 75 GYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSH 154 (189)
Q Consensus 75 g~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~ 154 (189)
|+|+..+||+|||++...++ ...| ++.+|++|+++|+|++||+||||||||.|++.++..+
T Consensus 188 ~~~~~~~g~~spl~~~~~~~-~~~~------------------v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~~ 248 (334)
T smart00636 188 GAWSNPTGHNAPLYAGPGDP-EKYN------------------VDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSNN 248 (334)
T ss_pred CCCCCCCCCCCcCCCCCCCC-CCcc------------------HHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCcC
Confidence 99999999999999866543 2334 9999999999999999999999999999999998889
Q ss_pred CCCCcccCCCCCCCCCCCCcceeHHHHHhhc
Q psy4440 155 GLNALTVGPGLPGPFTQSPGFMAYYEVSHRQ 185 (189)
Q Consensus 155 ~~~~~~~g~g~~g~~t~~~G~~~Y~eIc~~l 185 (189)
++++|+.|++.+|+++.++|.++|.|||+.+
T Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~ 279 (334)
T smart00636 249 GPGAPFTGPATGGPGTWEGGVVDYREICKLL 279 (334)
T ss_pred CCCCcccCCCCCCCCCCcccchhHHHHHhhc
Confidence 9999999999999999999999999999875
No 4
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.96 E-value=4.7e-29 Score=220.42 Aligned_cols=144 Identities=26% Similarity=0.489 Sum_probs=116.6
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||++|++ +++||+++|+..... ..||++.+. ++|||||||||||||+|+..
T Consensus 141 l~elr~~l~~-~~~ls~a~~~~~~~~-~~yd~~~l~------------------------~~vD~i~vMtYD~~g~w~~~ 194 (345)
T cd02878 141 LKLLKSKLPS-GKSLSIAAPASYWYL-KGFPIKDMA------------------------KYVDYIVYMTYDLHGQWDYG 194 (345)
T ss_pred HHHHHHHhCc-CcEEEEEcCCChhhh-cCCcHHHHH------------------------hhCcEEEEEeecccCCcCcc
Confidence 5899999987 789999999876543 346666555 99999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCCCCCCcc
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALT 160 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~~~ 160 (189)
++|++|..+... |...+. ...+++.+|++|+++|+|++||+||||||||+|+++++.++++++|+
T Consensus 195 ~~~~~p~~p~~~--------------~~~~~~-~~~~~~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~ 259 (345)
T cd02878 195 NKWASPGCPAGN--------------CLRSHV-NKTETLDALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTF 259 (345)
T ss_pred CCcCCCCCCccc--------------ccccCC-CchhHHHHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcc
Confidence 888888433211 000111 11238899999999999999999999999999999999999999999
Q ss_pred cCCC---CCCCCCCCCcceeHHHHHhhc
Q psy4440 161 VGPG---LPGPFTQSPGFMAYYEVSHRQ 185 (189)
Q Consensus 161 ~g~g---~~g~~t~~~G~~~Y~eIc~~l 185 (189)
.|+| .+|++++..|.+.|+|||..+
T Consensus 260 ~g~~~~~~~g~~~~~~g~~~~~e~~~~~ 287 (345)
T cd02878 260 TGPGSGAEAGRCTCTAGYGAISEIEIID 287 (345)
T ss_pred cCCCCCCCCCCCCCchhhhhHHHHHHHH
Confidence 9986 467888999999999999854
No 5
>KOG2806|consensus
Probab=99.95 E-value=1.7e-28 Score=223.15 Aligned_cols=144 Identities=30% Similarity=0.627 Sum_probs=120.0
Q ss_pred ChhHHhhcCCCC-------cEEEEEeCCCcc-hhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeecc
Q psy4440 1 MKELSFAFKPRQ-------LSLSAVVSPSQT-IIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFD 72 (189)
Q Consensus 1 lkeLr~al~~~~-------~~Ls~av~~~~~-~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD 72 (189)
++|||++|.+.. +.|+.++.+++. ..+.+||+++|. +++||||||+||
T Consensus 188 i~elr~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~------------------------~~~DfiNi~syD 243 (432)
T KOG2806|consen 188 IQELRSAFARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLS------------------------KYVDFINIMSYD 243 (432)
T ss_pred HHHHHHHHHHHhhccCCccceeeeccccCccchhhccCCHHHHH------------------------hhCCeEEEeccc
Confidence 589999998632 245555555543 677888888887 999999999999
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeecc
Q psy4440 73 YSGYWDG--ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILAD 150 (189)
Q Consensus 73 ~~g~w~~--~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~ 150 (189)
|||+|+. .|||+|||+.........+| ++.+|++|+++|.|++|++||||||||.|++++
T Consensus 244 f~gpw~~~~~tGp~aPl~~~~~~~~~~~N------------------vd~~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~ 305 (432)
T KOG2806|consen 244 YYGPWSLPCFTGPPSPLYKGPSMTNPKMN------------------VDSLLKYWTEKGLPPSKLVLALPFYGRSWQLLE 305 (432)
T ss_pred ccCCCcCCCcCCCCcccCCCCcccccCcc------------------hhhhHHHHhhcCCCchheEEEEecceehhhhcC
Confidence 9999998 89999999986542223344 999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCCCCCCC-CCCCCcceeHHHHHhhccC
Q psy4440 151 SNSHGLNALTVGPGLPGP-FTQSPGFMAYYEVSHRQTT 187 (189)
Q Consensus 151 ~~~~~~~~~~~g~g~~g~-~t~~~G~~~Y~eIc~~l~~ 187 (189)
...+ ++.+..+++.+|+ .+..+|+++|+|||+.+.+
T Consensus 306 ~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~ 342 (432)
T KOG2806|consen 306 DSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKIN 342 (432)
T ss_pred CcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcc
Confidence 7666 7778888888887 7889999999999997654
No 6
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.92 E-value=2e-25 Score=198.52 Aligned_cols=131 Identities=24% Similarity=0.379 Sum_probs=99.9
Q ss_pred ChhHHhhcCCC--CcEEEEEeCCCcchhhh-hhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCC-
Q psy4440 1 MKELSFAFKPR--QLSLSAVVSPSQTIIDQ-AYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGY- 76 (189)
Q Consensus 1 lkeLr~al~~~--~~~Ls~av~~~~~~~~~-~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~- 76 (189)
|+|||++|++. +++||++++..+...+. .||++.|+ ++||||||||||+|+.
T Consensus 138 lkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~------------------------~~vD~v~lMtYD~h~~~ 193 (358)
T cd02875 138 VKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGIA------------------------DASDFLVVMDYDEQSQI 193 (358)
T ss_pred HHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHHH------------------------hhCCEeeEEeecccCCC
Confidence 58999999875 68999999977654443 26666665 9999999999999985
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCC
Q psy4440 77 WDG--ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSH 154 (189)
Q Consensus 77 w~~--~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~ 154 (189)
|++ .+||+||+.+ ++.+|++|+.+|+|++||+||||||||.|++.+....
T Consensus 194 w~~~~~~g~~ap~~~----------------------------v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~~~~ 245 (358)
T cd02875 194 WGKECIAGANSPYSQ----------------------------TLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGNLE 245 (358)
T ss_pred CCCCCCCCCCCCchh----------------------------HHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCCccc
Confidence 763 5789999754 8999999999999999999999999999997654311
Q ss_pred -----CCCCcccCCCCCCCCCCC-CcceeHHHHHhhccC
Q psy4440 155 -----GLNALTVGPGLPGPFTQS-PGFMAYYEVSHRQTT 187 (189)
Q Consensus 155 -----~~~~~~~g~g~~g~~t~~-~G~~~Y~eIc~~l~~ 187 (189)
.++.|..|. +++.. .+.++|.|||+++++
T Consensus 246 ~~~~~~~~~p~~g~----~~~~~~g~~i~Y~ei~~~~~~ 280 (358)
T cd02875 246 DVVCTIPKVPFRGA----NCSDAAGRQIPYSEIMKQINS 280 (358)
T ss_pred CcccCCCCCCcCCC----CCcCCCCCccCHHHHHHHHhc
Confidence 122333332 22332 347999999998653
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.92 E-value=2.9e-25 Score=194.17 Aligned_cols=105 Identities=30% Similarity=0.658 Sum_probs=90.2
Q ss_pred ChhHHhhcCCC------CcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCC
Q psy4440 1 MKELSFAFKPR------QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYS 74 (189)
Q Consensus 1 lkeLr~al~~~------~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~ 74 (189)
|+|||++|++. +++||+++|+.+...+ .+++++|. ++||||||||||||
T Consensus 158 l~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~-~~~~~~l~------------------------~~vD~vnlMtYD~~ 212 (322)
T cd06548 158 LKELREALDALGAETGRKYLLTIAAPAGPDKLD-KLEVAEIA------------------------KYLDFINLMTYDFH 212 (322)
T ss_pred HHHHHHHHHHhhhccCCceEEEEEccCCHHHHh-cCCHHHHh------------------------hcCCEEEEEEeecc
Confidence 58999999874 5999999999876543 35555555 99999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeee
Q psy4440 75 GYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFIL 148 (189)
Q Consensus 75 g~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l 148 (189)
|+|+..+||+|||+..+.++...++ ++.+|++|+++|+|++||+||||||||+|++
T Consensus 213 g~w~~~~g~~spL~~~~~~~~~~~~------------------v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~ 268 (322)
T cd06548 213 GAWSNTTGHHSNLYASPADPPGGYS------------------VDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG 268 (322)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcc------------------HHHHHHHHHHcCCCHHHeEEEecccccccCC
Confidence 9999999999999987654433444 9999999999999999999999999999987
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=9.6e-25 Score=195.82 Aligned_cols=119 Identities=23% Similarity=0.454 Sum_probs=94.2
Q ss_pred ChhHHhhcCC------CCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCC
Q psy4440 1 MKELSFAFKP------RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYS 74 (189)
Q Consensus 1 lkeLr~al~~------~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~ 74 (189)
|+|||++|++ ++++||+|.|++...++ +.+..++ +++|||||+||||||
T Consensus 200 l~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~------------------------~~~vDyiNiMTYDf~ 254 (441)
T COG3325 200 LQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEI------------------------AQYVDYINIMTYDFH 254 (441)
T ss_pred HHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHH------------------------HHHHhhhheeeeecc
Confidence 6899999986 56999999999998776 4554444 499999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCC
Q psy4440 75 GYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNS 153 (189)
Q Consensus 75 g~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~ 153 (189)
|+|++.+|||||||..+.++.. .|....+..+......++.....++||+|||||+|||||+|..++...
T Consensus 255 G~Wn~~~Gh~a~Ly~~~~d~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~ 324 (441)
T COG3325 255 GAWNETLGHHAALYGTPKDPPL---------ANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGS 324 (441)
T ss_pred cccccccccccccccCCCCCcc---------ccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcc
Confidence 9999999999999987776532 122222223333335677777788999999999999999999997655
No 9
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.91 E-value=1.3e-24 Score=188.86 Aligned_cols=103 Identities=36% Similarity=0.725 Sum_probs=85.5
Q ss_pred ChhHHhhcCC-------CCcEEEEEeCCCcch----hhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEe
Q psy4440 1 MKELSFAFKP-------RQLSLSAVVSPSQTI----IDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVL 69 (189)
Q Consensus 1 lkeLr~al~~-------~~~~Ls~av~~~~~~----~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invM 69 (189)
|+|||++|++ ++++||+++|+.+.. ....||++.|. ++|||||||
T Consensus 132 l~elr~~l~~~~~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~------------------------~~vD~i~vM 187 (299)
T cd02879 132 LEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAIN------------------------KNLDWVNVM 187 (299)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEeecccchhhccccccccCCHHHHH------------------------hhCCEEEEE
Confidence 5899999982 578999999987654 23445555555 999999999
Q ss_pred eccCCCCCCC-CCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeee
Q psy4440 70 SFDYSGYWDG-ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFIL 148 (189)
Q Consensus 70 tYD~~g~w~~-~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l 148 (189)
||||||+|+. .++|+|||+..+. .++ ++.+|++|+++|+|++|||||||||||+|++
T Consensus 188 tYD~~g~~~~~~~~~~a~l~~~~~----~~~------------------~~~~v~~~~~~g~p~~KlvlGvp~YGr~~~~ 245 (299)
T cd02879 188 AYDYYGSWESNTTGPAAALYDPNS----NVS------------------TDYGIKSWIKAGVPAKKLVLGLPLYGRAWTL 245 (299)
T ss_pred eecccCCCCCCCCCCCCcCCCCCC----CCC------------------HHHHHHHHHHcCCCHHHEEEEeccccccccc
Confidence 9999999986 5789999997432 233 9999999999999999999999999999988
Q ss_pred c
Q psy4440 149 A 149 (189)
Q Consensus 149 ~ 149 (189)
-
T Consensus 246 ~ 246 (299)
T cd02879 246 Y 246 (299)
T ss_pred c
Confidence 3
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.91 E-value=3.8e-24 Score=185.29 Aligned_cols=140 Identities=35% Similarity=0.695 Sum_probs=117.6
Q ss_pred ChhHHhhcCC-----CCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCC
Q psy4440 1 MKELSFAFKP-----RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSG 75 (189)
Q Consensus 1 lkeLr~al~~-----~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g 75 (189)
|++||++|++ +++.||+++|+.+...+. ++++.+. ++||||+||+||+++
T Consensus 142 l~~L~~~l~~~~~~~~~~~ls~a~p~~~~~~~~-~~~~~l~------------------------~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 142 LKELRKALKRANRSGKGYILSVAVPPSPDYYDK-YDYKELA------------------------QYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEEECSHHHHTT-HHHHHHH------------------------TTSSEEEEETTSSSS
T ss_pred hhhhhhhhcccccccceeEEeeccccccccccc-ccccccc------------------------ccccccccccccCCC
Confidence 5789999988 389999999998875443 3666666 999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCCC
Q psy4440 76 YWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHG 155 (189)
Q Consensus 76 ~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~ 155 (189)
+|+..++|++||+....+ ...++ ++.+|++|+..|+|++||+||+|+|||.|++.....+.
T Consensus 197 ~~~~~~~~~~~l~~~~~~-~~~~~------------------~~~~v~~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~~~ 257 (343)
T PF00704_consen 197 PWSDVTGPNAPLYDSSWD-SNYYS------------------VDSAVQYWIKAGVPPSKLVLGLPFYGRSWTLVNGSPNG 257 (343)
T ss_dssp TTSSBETTSSSSSHTTTS-GTSSS------------------HHHHHHHHHHTTSTGGGEEEEEESEEEEEESSSSTTST
T ss_pred CcccccccccccccCCcc-CCCce------------------eeeehhhhccccCChhheeecCCcccccceecCCcCCC
Confidence 999999999999986543 12233 99999999999999999999999999999999887777
Q ss_pred CCCcccCCCCCCCCCCCCcceeHHHHHhhcc
Q psy4440 156 LNALTVGPGLPGPFTQSPGFMAYYEVSHRQT 186 (189)
Q Consensus 156 ~~~~~~g~g~~g~~t~~~G~~~Y~eIc~~l~ 186 (189)
..++.. +.++..+..+|.++|.|||..++
T Consensus 258 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 286 (343)
T PF00704_consen 258 PWGPAY--WSPGKGTKNAGILSYYELCALLK 286 (343)
T ss_dssp TTBBEE--SEETTTTSBTTEEEHHHHHHHTH
T ss_pred CCCccc--ccccccccCCCccccccchhhcc
Confidence 666654 34567788999999999999873
No 11
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.87 E-value=7.7e-23 Score=178.43 Aligned_cols=101 Identities=21% Similarity=0.401 Sum_probs=82.9
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||++|+++++.|+++|++....-.. ...+..+|+++++++||+|||||||+||+ ..
T Consensus 136 l~el~~~l~~~~~~l~~~v~~~~~~~~~-------------------~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~ 194 (318)
T cd02876 136 VIHLGETLHSANLKLILVIPPPREKGNQ-------------------NGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QR 194 (318)
T ss_pred HHHHHHHHhhcCCEEEEEEcCccccccc-------------------cccccccCHHHHHhhccEEEEEeeccCCC--CC
Confidence 5899999999899999999876431000 00123455666669999999999999997 78
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcC-CCCCceeeeccceeeeeeecc
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKG-MPARKVIMGMPLYAQTFILAD 150 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~G-vp~~KlvlGip~YGr~~~l~~ 150 (189)
+||+|||++ ++.+|++|++.| +|++||+||||||||.|++.+
T Consensus 195 ~g~~apl~~----------------------------v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~~~~ 237 (318)
T cd02876 195 PGPNAPLSW----------------------------VRSCLELLLPESGKKRAKILLGLNFYGNDYTLPG 237 (318)
T ss_pred CCCCCCcHH----------------------------HHHHHHHHHhcCCCCHHHeEEeccccccccccCC
Confidence 999999985 999999999987 999999999999999998764
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.85 E-value=7.7e-22 Score=171.37 Aligned_cols=121 Identities=21% Similarity=0.416 Sum_probs=89.0
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||.+|++++++|++++++........ ..+..+|++++++++|+||||+||+||+|+ .
T Consensus 126 l~~lr~~l~~~~~~lsv~~~p~~~~~~~~-------------------~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~-~ 185 (313)
T cd02874 126 LRELSDRLHPAGYTLSTAVVPKTSADQFG-------------------NWSGAYDYAAIGKIVDFVVLMTYDWHWRGG-P 185 (313)
T ss_pred HHHHHHHhhhcCcEEEEEecCcccccccc-------------------ccccccCHHHHHhhCCEEEEEEeccCCCCC-C
Confidence 58999999988899999987764321000 001233444555999999999999999875 6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccCCCCCCCCcc
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALT 160 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~~~ 160 (189)
+||+||+.+ ++..+++++ .|+|++||+||||+|||.|++.+..
T Consensus 186 ~gp~a~~~~----------------------------~~~~~~~~~-~gvp~~KlvlGip~YG~~w~~~~~~-------- 228 (313)
T cd02874 186 PGPVAPIGW----------------------------VERVLQYAV-TQIPREKILLGIPLYGYDWTLPYKK-------- 228 (313)
T ss_pred CCccCChHH----------------------------HHHHHHHHH-hcCCHHHEEEeecccccccccCCCC--------
Confidence 799999864 788888766 7999999999999999999876410
Q ss_pred cCCCCCCCCCCCCcceeHHHHHhhccC
Q psy4440 161 VGPGLPGPFTQSPGFMAYYEVSHRQTT 187 (189)
Q Consensus 161 ~g~g~~g~~t~~~G~~~Y~eIc~~l~~ 187 (189)
+ ...+.++|.|+|++++.
T Consensus 229 ---~------~~~~~~~~~~~~~~~~~ 246 (313)
T cd02874 229 ---G------GKASTISPQQAINLAKR 246 (313)
T ss_pred ---C------cCccccCHHHHHHHHHH
Confidence 0 12356778888776643
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.81 E-value=2.3e-20 Score=158.08 Aligned_cols=91 Identities=27% Similarity=0.565 Sum_probs=76.3
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCC-
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDG- 79 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~- 79 (189)
++|||++|++.+++||+++++..... ++ .++. +++|||||||||++|+|..
T Consensus 121 v~~Lr~~l~~~~~~lt~av~~~~~~~---~~-~~~~------------------------~~vD~i~vMtYD~~g~~~~~ 172 (253)
T cd06545 121 IRALYAALKKEGKLLTAAVSSWNGGA---VS-DSTL------------------------AYFDFINIMSYDATGPWWGD 172 (253)
T ss_pred HHHHHHHHhhcCcEEEEEccCccccc---cc-HHHH------------------------hhCCEEEEEcCcCCCCCCCC
Confidence 58999999988899999998754311 22 2233 8999999999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCC-CCCceeeeccceeeeee
Q psy4440 80 ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGM-PARKVIMGMPLYAQTFI 147 (189)
Q Consensus 80 ~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gv-p~~KlvlGip~YGr~~~ 147 (189)
.+||+||+.+ ++.+|++|+..|+ |++||+||||+|||.|+
T Consensus 173 ~~g~~a~~~~----------------------------~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~ 213 (253)
T cd06545 173 NPGQHSSYDD----------------------------AVNDLNYWNERGLASKDKLVLGLPFYGYGFY 213 (253)
T ss_pred CCCCCCchHh----------------------------HHHHHHHHHHcCCCCHHHEEEEeCCcccccc
Confidence 6789998754 8899999999998 99999999999999994
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.77 E-value=3.2e-19 Score=154.87 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=72.2
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||++|++++++||++||+... .||++.|+ +++|+|+|||||+|++|+ .
T Consensus 127 l~eL~~~l~~~~~~lsv~v~~~~~----~~d~~~l~------------------------~~~D~v~lMtYD~~~~~~-~ 177 (298)
T cd06549 127 LSELRRRLPAQGKQLTVTVPADEA----DWNLKALA------------------------RNADKLILMAYDEHYQGG-A 177 (298)
T ss_pred HHHHHHHhhhcCcEEEEEecCCCC----CCCHHHHH------------------------HhCCEEEEEEeccCCCCC-C
Confidence 589999999989999999998653 36666666 999999999999998754 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeecc
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILAD 150 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~ 150 (189)
.|+.+|+.+ ++..+++. .+|+|++||+||||+|||.|++..
T Consensus 178 ~gp~a~~~~----------------------------~~~~~~~~-~~~vp~~KlvlGip~YG~~w~~~~ 218 (298)
T cd06549 178 PGPIASQDW----------------------------FESNLAQA-VKKLPPEKLIVALGSYGYDWTKGG 218 (298)
T ss_pred CCCCCChhh----------------------------HHHHHHHH-HhCCCHHHEEEEecccCccccCCC
Confidence 344443322 56666654 468999999999999999998753
No 15
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.56 E-value=3e-15 Score=134.49 Aligned_cols=102 Identities=25% Similarity=0.445 Sum_probs=84.8
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+++|.+|++.++.+|+||++.......+ +-+..+|+.++.+++|+|.|||||.|.+| +.
T Consensus 230 lR~~r~~l~~~G~~~siAvaakt~~~~~G-------------------~W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~ 289 (423)
T COG3858 230 LRQVRDALHSGGYTVSIAVAAKTSDLQVG-------------------SWHGAYDYVALGKIADFVILMTYDWHYSG-GP 289 (423)
T ss_pred HHHHHHHhccCCeEEEEEecCCCCCCcCc-------------------cccchhhhhhhceeeeEEEEEEeccCcCC-CC
Confidence 57999999999999999999986543322 12456777888899999999999999988 45
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeeeccC
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADS 151 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~ 151 (189)
.|+.||+-+ |+..+++-+.. +|++||+||+|+||+.|++...
T Consensus 290 PG~vA~i~~----------------------------vr~~ieya~T~-iP~~Kv~mGip~YGYDW~~~y~ 331 (423)
T COG3858 290 PGPVASIGW----------------------------VRKVIEYALTV-IPAEKVMMGIPLYGYDWTLPYD 331 (423)
T ss_pred CCcccCchh----------------------------Hhhhhhhhhee-cchHHeEEccccccccccCCCC
Confidence 688888766 88888887775 9999999999999999998743
No 16
>KOG2091|consensus
Probab=98.92 E-value=5.9e-10 Score=97.66 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=79.1
Q ss_pred hhHHhhcCCCCcEEEEEeCCCcchh-hhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 2 KELSFAFKPRQLSLSAVVSPSQTII-DQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 2 keLr~al~~~~~~Ls~av~~~~~~~-~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
++|-++++++++.+..+|||..+.- .+.+ -+.+.+++.+.+.+|.+.+|||||.+. ..
T Consensus 210 ~hl~k~Lhkq~l~~iLvvPp~~~~e~~~~~-------------------~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~ 268 (392)
T KOG2091|consen 210 EHLGKALHKQELQAILVVPPVIEEENGQLK-------------------FFTPEEFSKLVAVYDGFSLMTYDYSLV--QG 268 (392)
T ss_pred HHHHHHHHHhheEEEEEeCCCCcCCCCCcC-------------------cCCHHHHHHHHHhhhheeEEEeecccc--cC
Confidence 5677888888899999999953311 1111 256778888889999999999999875 46
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeeee
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFIL 148 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l 148 (189)
+|++||+.+ ++.+++.+.-..--+.|+.+|+.|||..|..
T Consensus 269 pg~nap~~w----------------------------i~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~ 308 (392)
T KOG2091|consen 269 PGPNAPLEW----------------------------IRHCLHHLGGSSAKRPKILLGLNFYGNDFNL 308 (392)
T ss_pred CCCCCCHHH----------------------------HHHHHHHhCCccccccceeEeeecccccccc
Confidence 799999987 8999998766666779999999999999987
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=98.70 E-value=2e-08 Score=85.97 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=60.8
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||++|+++++++.+++.+..... ..+.++.+. +++|+|++|+|||++.+.+.
T Consensus 135 l~~l~~~l~~~~~lt~a~vap~~~~~-~~~y~~~~~------------------------~~~d~id~~~~qfy~~~~~~ 189 (253)
T cd06544 135 IGQLITELKNNGVIKVASIAPSEDAE-QSHYLALYN------------------------AYGDYIDYVNYQFYNYGVPT 189 (253)
T ss_pred HHHHHHHhhhcCCeEEEEecCCcccc-ccccHHHHH------------------------HhhCceeEEEhhhhCCCCCC
Confidence 57999999988866666666654432 223355544 89999999999999864321
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeeee
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFI 147 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~~ 147 (189)
. .. ......+.|. +++|++||++|+|+++++|.
T Consensus 190 --------~-~~------------------------~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 190 --------T-VA------------------------KYVEFYDEVA-NNYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred --------C-HH------------------------HHHHHHHHHH-hCCCcccEEEEEecCCCccC
Confidence 0 00 0223344454 46999999999999999996
No 18
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=98.36 E-value=3.4e-07 Score=74.22 Aligned_cols=48 Identities=29% Similarity=0.526 Sum_probs=39.8
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeecc
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFD 72 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD 72 (189)
|++||++|++++++||+++|+........|+...+. +++||+|+|+||
T Consensus 130 l~~lr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~------------------------~~vD~v~vm~Yd 177 (210)
T cd00598 130 LRELRSALGAANYLLTIAVPASYFDLGYAYDVPAIG------------------------DYVDFVNVMTYD 177 (210)
T ss_pred HHHHHHHhcccCcEEEEEecCChHHhhccCCHHHHH------------------------hhCCEEEEeeec
Confidence 589999999888999999999876543335655555 999999999999
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=98.36 E-value=7.7e-07 Score=77.95 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=35.0
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhc-hhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYN-VKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYW 77 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w 77 (189)
|+|||++|++ +++||+|.... . .+.++. ...+. ..| ....+++.+++||+|||.||.+|.+
T Consensus 138 lk~lr~~~~~-~~~lT~AP~~~-~-~~~~~~~~~~~~------------~~y-~~~~~~~~~~~D~invqfYn~~~~~ 199 (312)
T cd02871 138 LKQLKDHYGP-NFILTMAPETP-Y-VQGGYAAYGGIW------------GAY-LPLIDNLRDDLTWLNVQYYNSGGMG 199 (312)
T ss_pred HHHHHHHcCC-CeEEEECCCcc-c-ccCcccccccCC------------cch-hHHHHHhhhheeEEEEeeccCCCcc
Confidence 5789999976 78999984322 1 111000 00000 000 0013455589999999999998753
No 20
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=98.15 E-value=1.2e-06 Score=73.98 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCCCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGA 80 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w~~~ 80 (189)
|+|||++|++++++|++++++..... +.+++. +++||+++|+||-++. .
T Consensus 134 v~~Lr~~~~~~~kllt~~~~~~~~~~----~~~~~~------------------------~~vDyv~~~~y~~~~~---~ 182 (255)
T cd06542 134 IKELRKYMGPTDKLLTIDGYGQALSN----DGEEVS------------------------PYVDYVIYQYYGSSSS---S 182 (255)
T ss_pred HHHHHHHhCcCCcEEEEEecCCchhc----CHHHHH------------------------HhCCEEEeeccCCCCc---c
Confidence 58999999887899999998765321 334444 9999999999986432 2
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccceeeee
Q psy4440 81 TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146 (189)
Q Consensus 81 tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGr~~ 146 (189)
++- +. .....|+|++|+++|++|++...
T Consensus 183 ~~~----~~----------------------------------~~~~~g~~~~k~i~~~~~~~~~~ 210 (255)
T cd06542 183 TQR----NW----------------------------------NTNSPKIPPEKMVYTESFEEENG 210 (255)
T ss_pred CCc----cc----------------------------------ccccCCCCHHHceeeeeeecccC
Confidence 110 00 01134899999999999997654
No 21
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=98.02 E-value=8.8e-06 Score=69.68 Aligned_cols=80 Identities=13% Similarity=0.311 Sum_probs=50.9
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCc-----chhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQ-----TIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSG 75 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~-----~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g 75 (189)
++|||++|++ +++||+|..... ... .++++..+. .....++||+|+|.||.+|
T Consensus 133 l~~Lr~~~~~-~~~lT~Ap~~~~~~~g~~~~-~~~~~~~l~--------------------~~~~~~~Df~nvQfYn~~g 190 (256)
T cd06546 133 IDRLRSDFGP-DFIITLAPVASALTGGEANL-SGFDYRELE--------------------QARGDKIDFYNAQFYNGFG 190 (256)
T ss_pred HHHHHHHhCC-CcEEEECCccccccCCcccc-cccCHHHHH--------------------HhhCCceeEEEEcCcCCCC
Confidence 5899999975 578888764331 111 123333332 1223599999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCCCceeeeccc
Q psy4440 76 YWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPL 141 (189)
Q Consensus 76 ~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~ 141 (189)
.-. . . .....|+..|+|++||++|+|.
T Consensus 191 ~~~----------~----------------------------~-~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 191 SMS----------S----------------------------P-SDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred Ccc----------C----------------------------H-HHHHHHHHcCCCcccEEEEEec
Confidence 311 0 1 1233466779999999999995
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=97.64 E-value=0.00012 Score=63.64 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=50.5
Q ss_pred ChhHHhhcCC---CCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeeccCCCCC
Q psy4440 1 MKELSFAFKP---RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYW 77 (189)
Q Consensus 1 lkeLr~al~~---~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD~~g~w 77 (189)
+++||+.+++ ++++||+|..... . ..+....+. ..++||+|||.||..+-
T Consensus 141 ~~~LR~~~~~~~~~~~~LTaAPq~~~--~-d~~~~~~i~-----------------------~~~~D~i~vqfYn~~~c- 193 (280)
T cd02877 141 AKRLRSLFASDPSKKYYLTAAPQCPY--P-DASLGDAIA-----------------------TGLFDFIFVQFYNNPCC- 193 (280)
T ss_pred HHHHHHHhhcccCCceEEEeccccCC--c-chhHHHHHc-----------------------cCccCEEEEEEecCccc-
Confidence 4789999975 5699999844421 1 112222222 14899999999997431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHHcCCCC---Cceeeecccee
Q psy4440 78 DGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPA---RKVIMGMPLYA 143 (189)
Q Consensus 78 ~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~~Gvp~---~KlvlGip~YG 143 (189)
.+. ..... ......+.|.+. ++. .||+||+|..-
T Consensus 194 ------~~~-~~~~~------------------------~~~~~~~~w~~~-~~~~~~~kv~lGlpas~ 230 (280)
T cd02877 194 ------SYA-SGNAS------------------------GFNFNWDTWTSW-AKATSNAKVFLGLPASP 230 (280)
T ss_pred ------ccc-ccccc------------------------hhhhHHHHHHHh-cccCCCceEEEecccCC
Confidence 000 00000 033556667664 565 89999999874
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=97.61 E-value=5.3e-05 Score=66.31 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=38.8
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhh-hhhchhhhhhhhhhHHHhhhcccccccchhhhcc----cCcEEEEeeccCCC
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIID-QAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAK----YLDWVTVLSFDYSG 75 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~-~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~vD~invMtYD~~g 75 (189)
|++||+++. ++.||+++|..+..+. .++++-+.+ + .+|+||||||||++
T Consensus 130 l~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a------------------------~~~Gv~~d~VNiMtmDyg~ 183 (294)
T cd06543 130 LALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAA------------------------AANGVDLDTVNIMTMDYGS 183 (294)
T ss_pred HHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHH------------------------HHcCCCcceeeeeeecCCC
Confidence 478888883 6889999998777654 556655555 5 89999999999987
Q ss_pred C
Q psy4440 76 Y 76 (189)
Q Consensus 76 ~ 76 (189)
+
T Consensus 184 ~ 184 (294)
T cd06543 184 S 184 (294)
T ss_pred C
Confidence 4
No 24
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=76.69 E-value=3 Score=36.75 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCC-Cceeeeccceeee
Q psy4440 118 LNSNINYWISKGMPA-RKVIMGMPLYAQT 145 (189)
Q Consensus 118 v~~~v~~~~~~Gvp~-~KlvlGip~YGr~ 145 (189)
.+..+..|.+.-.+. -+|.+|+++|--.
T Consensus 272 ~~~~~~~w~~~~~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 272 YEQLAKWWAKQVKPTNVHLYIGLALYKVG 300 (311)
T ss_pred HHHHHHHHHHhhcCCCceEEEccCcCCCC
Confidence 677778787764433 4899999998543
No 25
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=74.20 E-value=3.3 Score=36.26 Aligned_cols=60 Identities=23% Similarity=0.420 Sum_probs=35.3
Q ss_pred hhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHHH----c-----
Q psy4440 58 SLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWIS----K----- 128 (189)
Q Consensus 58 ~~~~~vD~invMtYD~~g~w~~~tg~~apL~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~v~~~v~~~~~----~----- 128 (189)
++..+.|||+..-|..-|--...+..++++-+.... +....-+++. .
T Consensus 197 ~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~------------------------~kesfly~~~~slanGtr~f 252 (332)
T COG3469 197 ELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDM------------------------VKESFLYYLTFSLANGTRGF 252 (332)
T ss_pred HHhhHHhhhhHHHhcCCCCCCCcCccccccccccHH------------------------HHHhHHHHhhhhhhcCcccc
Confidence 344899999999988766422223334454332111 3333333332 1
Q ss_pred -CCCCCceeeeccc
Q psy4440 129 -GMPARKVIMGMPL 141 (189)
Q Consensus 129 -Gvp~~KlvlGip~ 141 (189)
.+|++|+++|+|.
T Consensus 253 ~~ipa~k~aiGLPs 266 (332)
T COG3469 253 EKIPADKFAIGLPS 266 (332)
T ss_pred eecccceeEEecCC
Confidence 3899999999995
No 26
>KOG1552|consensus
Probab=72.71 E-value=5.8 Score=34.41 Aligned_cols=12 Identities=58% Similarity=1.068 Sum_probs=10.9
Q ss_pred EEEEeeccCCCC
Q psy4440 65 WVTVLSFDYSGY 76 (189)
Q Consensus 65 ~invMtYD~~g~ 76 (189)
.+|||+|||.|.
T Consensus 88 n~nv~~~DYSGy 99 (258)
T KOG1552|consen 88 NCNVVSYDYSGY 99 (258)
T ss_pred cceEEEEecccc
Confidence 689999999996
No 27
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=69.89 E-value=17 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=30.0
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeec
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSF 71 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtY 71 (189)
|++||.+|.+ ++.|||+.-+..-.... - +.++...||.+.+|+|
T Consensus 64 L~~LR~~LP~-~~~LSIT~L~dW~~~~~--~------------------------L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 64 LQQLRQRLPP-DYRLSITALPDWLSSPD--W------------------------LNALPGVVDELVLQVY 107 (181)
T ss_pred HHHHHHhCCC-CceEeeEEehhhhcCch--h------------------------hhhHhhcCCeeEEEee
Confidence 4789999975 68888876554322111 1 3344488999999999
No 28
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=54.80 E-value=11 Score=33.49 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=37.6
Q ss_pred ChhHHhhcCCCCcEEEEEeCCCcchhhhhhchhhhhhhhhhHHHhhhcccccccchhhhcccCcEEEEeecc
Q psy4440 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFD 72 (189)
Q Consensus 1 lkeLr~al~~~~~~Ls~av~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~invMtYD 72 (189)
|++.|+++++.+..||+.|-+...... +-.. ..-++.+|+++||+|.=|-|=
T Consensus 176 l~~a~~~l~~~~v~vSaDVfG~~~~~~---~~~~-----------------iGQ~~~~~a~~vD~IsPMiYP 227 (316)
T PF13200_consen 176 LAYAREELHPYGVPVSADVFGYVAWSP---DDMG-----------------IGQDFEKIAEYVDYISPMIYP 227 (316)
T ss_pred HHHHHHHHhHcCCCEEEEecccccccC---CCCC-----------------cCCCHHHHhhhCCEEEecccc
Confidence 467889998889999999987644321 1111 235666777999999999984
No 29
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=53.42 E-value=7.6 Score=29.53 Aligned_cols=20 Identities=15% Similarity=0.513 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCceeeec
Q psy4440 120 SNINYWISKGMPARKVIMGM 139 (189)
Q Consensus 120 ~~v~~~~~~Gvp~~KlvlGi 139 (189)
..-+.++++|||++.||||+
T Consensus 78 gIa~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 78 GIAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHHcCCCHHHEEEcc
Confidence 45567889999999999996
No 30
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.34 E-value=1e+02 Score=23.60 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCCCceeeeccceee-eeeeccCCCCCCCCcccCCCCCCCCCCCCcceeHHHHHhhcc
Q psy4440 118 LNSNINYWISKGMPARKVIMGMPLYAQ-TFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEVSHRQT 186 (189)
Q Consensus 118 v~~~v~~~~~~Gvp~~KlvlGip~YGr-~~~l~~~~~~~~~~~~~g~g~~g~~t~~~G~~~Y~eIc~~l~ 186 (189)
+..+++.+.+.++|-+.|.||=|+=|. +|-..+ .+..| . +=--++|.||+++|+
T Consensus 66 ~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~~dD--------~~ir~---~----~~~~~~~~~~~~~~~ 120 (126)
T TIGR01689 66 LPIIILWLNQHNVPYDEIYVGKPWCGHDGFYVDD--------RAIRP---S----EFSSLTYDEINTLTK 120 (126)
T ss_pred HHHHHHHHHHcCCCCceEEeCCCcCCCCCceecc--------hhhCH---H----HHHhcCHHHHHHHHh
Confidence 555665555679999999999997652 232222 12221 1 123488999999885
Done!