RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4440
(189 letters)
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 144 bits (366), Expect = 7e-42
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 47/188 (25%)
Query: 1 MKELSFAFKPR-------QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
+++L+ AF+ +L LSA V QT +D +
Sbjct: 138 VQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVD------------------------AG 173
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
Y V +A+ LD+V ++++D+ G W+ TGH +PLY+ Q++ + + V
Sbjct: 174 YEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNV----------- 222
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSP 173
++ + W+ KG PA K+I+GMP Y ++F LA S+ + A G G PGPFT+
Sbjct: 223 -----DAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEG 277
Query: 174 GFMAYYEV 181
G +AYYEV
Sbjct: 278 GMLAYYEV 285
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 141 bits (357), Expect = 4e-41
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 48/187 (25%)
Query: 1 MKELSFAF------KPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSY 54
+KE+ F QL LSA VS + ID+ Y
Sbjct: 133 VKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDR------------------------GY 168
Query: 55 NVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDN 114
++ ++++LD++++L++D+ G W GH +PL++ +D +
Sbjct: 169 DIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA------------- 215
Query: 115 HHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPG 174
+ ++Y + G PA K++MG+P + ++F LA S + A GPG+PG FT+ G
Sbjct: 216 ----DYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK-TDVGAPVSGPGIPGRFTKEKG 270
Query: 175 FMAYYEV 181
+AYYE+
Sbjct: 271 ILAYYEI 277
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 141 bits (357), Expect = 6e-41
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 47/188 (25%)
Query: 1 MKELSFAFKP-------RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
+KE+ AF+ +L L++ + +I
Sbjct: 138 VKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKS------------------------G 173
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
Y + L++ LD++ V+++D DG TG +PLY+S D S + V
Sbjct: 174 YKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNV----------- 222
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSP 173
+S I+YW G + K+I+G P Y TFIL+D + G+ A T+ G PG +T
Sbjct: 223 -----DSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDES 277
Query: 174 GFMAYYEV 181
G +AYYEV
Sbjct: 278 GLLAYYEV 285
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 140 bits (356), Expect = 9e-41
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 47/196 (23%)
Query: 1 MKELSFAFKPR-------QLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
++E+ AF+ +L ++A V+ + I
Sbjct: 138 VQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQS------------------------G 173
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
Y + L++YLD++ V+++D G W+G TG +PLY+ D + V
Sbjct: 174 YEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNV----------- 222
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSP 173
+ +NYW G PA K+I+G P Y FIL++ ++ G+ A T G G GP+ +
Sbjct: 223 -----DYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKES 277
Query: 174 GFMAYYEVSHRQTTPA 189
G AYYE+ A
Sbjct: 278 GIWAYYEICTFLKNGA 293
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 137 bits (347), Expect = 1e-39
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 50/190 (26%)
Query: 1 MKELSFAFK-------PRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
+ EL+ AF+ +L L+A VS + +ID +S
Sbjct: 134 IHELAEAFQKDFTKSTKERLLLTAGVSAGRQMID------------------------NS 169
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGA--TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
Y V+ LAK LD++ +LSFD+ G W+ TGH +PL + D+ S V
Sbjct: 170 YQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNV--------- 220
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
+ YWI KGMP+ KV+MG+P Y +F LA + + A GPG GP T+
Sbjct: 221 -------EYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAE-TTVGAPASGPGAAGPITE 272
Query: 172 SPGFMAYYEV 181
S GF+AYYE+
Sbjct: 273 SSGFLAYYEI 282
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 134 bits (338), Expect = 6e-38
Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 46/194 (23%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
++++ + + LS V P+ +++ +L
Sbjct: 177 VRDVKDSLRADGFLLSLTVLPNVNST-------------------------WYFDIPALN 211
Query: 61 KYLDWVTVLSFDYSGYWDGA--TGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLL 118
+D+V + +FD+ + AP+Y + +
Sbjct: 212 GLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNA---------------- 255
Query: 119 NSNINYWISKGMPARKVIMGMPLYAQTFILADSNSH---GLNALTVGPGLPGPFTQSPGF 175
+ + YW+S+G P+ K+ +G+ Y + L + + T GP G +Q PG
Sbjct: 256 DFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGL 315
Query: 176 MAYYEVSHRQTTPA 189
++Y E+ + + P
Sbjct: 316 LSYAEICGKLSNPQ 329
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 123 bits (311), Expect = 2e-34
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 57/190 (30%)
Query: 1 MKELSFAFKP-------RQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
+ E A L L+A VS S + +
Sbjct: 131 LNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGL------------------------N 166
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWD--GATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
Y V+SLA+ LDW+ ++++D+ G T A L+ + V+
Sbjct: 167 YPVESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNH----VSG----------- 211
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
+ IN WI G+P +K+++G+P Y + L ++N HGL A G G
Sbjct: 212 -------SDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVD- 263
Query: 172 SPGFMAYYEV 181
G M Y +
Sbjct: 264 -DGSMTYNRI 272
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 123 bits (311), Expect = 2e-34
Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 58/189 (30%)
Query: 1 MKELSFAF-------KPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSS 53
++E A +L L+A V S
Sbjct: 132 LREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSV------------------------L 167
Query: 54 YNVKSLAKYLDWVTVLSFDYSGY-WDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
Y V ++A LDWV ++++D+ G W TG A L+ + +
Sbjct: 168 YPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGP---SG------------ 212
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQS 172
++ WI G+PA+K ++G P Y + L ++NSH A T G
Sbjct: 213 ------DAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAA-----ISP 261
Query: 173 PGFMAYYEV 181
G + Y ++
Sbjct: 262 DGSIGYGQI 270
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 116 bits (293), Expect = 2e-31
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQS 110
++ + +A +DW+ ++++D++G W + H APL V
Sbjct: 227 AANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANT------- 279
Query: 111 HIDNHHLLNSN--INYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGP 168
N + G+PA K+++G+P Y + + +G G
Sbjct: 280 -------FNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGS--SV 330
Query: 169 FTQSPGFMAYYEV 181
T G +Y++
Sbjct: 331 GTWEAGSFDFYDL 343
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 114 bits (287), Expect = 2e-30
Identities = 26/211 (12%), Positives = 65/211 (30%), Gaps = 53/211 (25%)
Query: 1 MKELSFAFKPRQLS---------LSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAY 51
++E+ + ++ L+ + + + Y
Sbjct: 158 LQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYY--------------------- 196
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
+ + LD++ ++++D +G W+ T H A L+ S
Sbjct: 197 --SKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEE 254
Query: 112 IDNHHLLNSNIN-------YWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPG 164
+ ++ + + +G+P+ K++MG+P Y + F + G + PG
Sbjct: 255 LTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPG 314
Query: 165 --------------LPGPFTQSPGFMAYYEV 181
+ P +Y ++
Sbjct: 315 EDPYPSTDYWLVGCEECVRDKDPRIASYRQL 345
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 113 bits (284), Expect = 8e-30
Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 47/181 (25%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
+++++ A +S S ID A + + + ++
Sbjct: 311 IQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLM--------------- 355
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNS 120
++D+ DG H +Y+ D Y + +
Sbjct: 356 ---------TYDFFTLGDGKLSHHTNIYRDPSDVYSKYSI------------------DD 388
Query: 121 NINYWI-SKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYY 179
+ + I K + + + +G Y + A + + L G +T + + +
Sbjct: 389 AVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPS----EEALKGTYTDANQTLGSF 444
Query: 180 E 180
E
Sbjct: 445 E 445
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 109 bits (274), Expect = 1e-28
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 24/133 (18%)
Query: 49 SAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
++K + + LD+ ++++DY+G + +GH A +Y + +
Sbjct: 223 DKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNT------- 275
Query: 109 QSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGP 168
+ ++ + + G+PA K+++GMPLY ++F +N+ G G G
Sbjct: 276 ----------QTALDLYRAGGVPANKIVLGMPLYGRSF----ANTDGPGKPYNG---VGQ 318
Query: 169 FTQSPGFMAYYEV 181
+ G Y +
Sbjct: 319 GSWENGVWDYKAL 331
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 108 bits (272), Expect = 1e-28
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 49 SAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
S Y+ + L LD + ++++DY+G WD +GH LY S + + +
Sbjct: 200 SHYNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPFST------- 252
Query: 109 QSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGP 168
+ ++ +I+ G+PA K+I+GMP+Y + F G + G
Sbjct: 253 ----------KAAVDAYIAAGVPASKIILGMPIYGRAF-------VGTDGPGKPYSTIGE 295
Query: 169 FTQSPGFMAYYEV 181
+ G Y +
Sbjct: 296 GSWESGIWDYKVL 308
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 108 bits (271), Expect = 2e-28
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 49 SAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
Y+ + + KYLD+ ++++D+SG WD +GH++ ++ S + +
Sbjct: 182 QNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSS------- 234
Query: 109 QSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGP 168
+ + +I G+PA K+++GMPLY + F +++ G+ G G
Sbjct: 235 ----------DKAVKDYIKAGVPANKIVLGMPLYGRAF----ASTDGIGTSFNG---VGG 277
Query: 169 FTQSPGFMAYYEV 181
+ G Y ++
Sbjct: 278 GSWENGVWDYKDM 290
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 108 bits (271), Expect = 2e-28
Identities = 24/197 (12%), Positives = 62/197 (31%), Gaps = 58/197 (29%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
+K L A ++L ++ V + S +VK++A
Sbjct: 180 LKSLREAVGEQKL-VTIAVGANAESPK------------------------SWVDVKAVA 214
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNS 120
L+++ ++++D + + LY S + +
Sbjct: 215 PVLNYINLMTYDMAYGT---QYFNSNLYDSSHWPTVAAADKYSA--------------DF 257
Query: 121 NINYWISKGMPARKVIMGMPLY----------AQTFILADSNSHGLNALTVGP------G 164
+N +++ G+ ++ +G+ Y + AD+ ++ + GP
Sbjct: 258 VVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFA 317
Query: 165 LPGPFTQSPGFMAYYEV 181
G ++ Y ++
Sbjct: 318 SLGYDLSKDTYVKYNDI 334
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 109 bits (274), Expect = 2e-28
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDG-ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQ 109
+D + ++S+D+ G +D GH L + T
Sbjct: 347 IDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTT--------- 397
Query: 110 SHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPF 169
+ +N +++G+ K+++G +Y + + + + + G P
Sbjct: 398 ---------VNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKG 447
Query: 170 TQSPGFMAYYEV 181
T G + Y ++
Sbjct: 448 TWENGIVDYRQI 459
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 104 bits (261), Expect = 7e-27
Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 54/190 (28%)
Query: 1 MKELSFAF------KPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSY 54
+ E ++ LSA + + ID +
Sbjct: 209 LAEFRKQLDAYGSTNNKKYVLSAFLPANPADIDAG-----------------------GW 245
Query: 55 NVKSLAKYLDWVTVLSFDYSGYWDG-ATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
+ + K LD+ ++ +D G W+ TGH A LY D
Sbjct: 246 DDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKK------------- 292
Query: 114 NHHLLNSN--INYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPGPFTQ 171
+++ + +++ G+ +++ +G+ Y + + A + S A PG T
Sbjct: 293 ----FSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPWGPATDGAPG-----TY 343
Query: 172 SPGFMAYYEV 181
Y ++
Sbjct: 344 ETANEDYDKL 353
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 100 bits (251), Expect = 3e-25
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 12/142 (8%)
Query: 49 SAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
+ +Y+D++ +++D+ G W+ GH LY + +
Sbjct: 348 DKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGE 407
Query: 109 QSHIDNHHLLNSN--INYWISKGMPARKVIMGMPLYAQTFILADSNSHGL-------NAL 159
++ I +++G+PA K+++G +Y + + ++ A
Sbjct: 408 PYKGPA---YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTAT 464
Query: 160 TVGPGLPGPFTQSPGFMAYYEV 181
G G + Y +
Sbjct: 465 GKLKGSTAQGVWEDGVIDYKGI 486
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 83.3 bits (206), Expect = 6e-20
Identities = 18/181 (9%), Positives = 42/181 (23%), Gaps = 51/181 (28%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
+ L K + A +SP + Y +
Sbjct: 141 IGRLITTLKKNGVISFASISPFP--------------------------SVDEYYLALFN 174
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNS 120
+Y + + +++ + Y + Y + +
Sbjct: 175 EYKNAINHINYQFKAYDSSTSVDKFLGYYNNAASKYK---------------------GG 213
Query: 121 NINYWISKGMPARKVIMGMPLYAQTFILADSNS-HGLNALTVGPGLPGPF---TQSPGFM 176
N+ S G + + + L + HG+ T F ++ F+
Sbjct: 214 NVLISFSTGPHPGGLPVDKGFFDAATSLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFL 273
Query: 177 A 177
Sbjct: 274 V 274
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 79.0 bits (195), Expect = 5e-18
Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 51/160 (31%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
+++L + L+ V + Y+ +
Sbjct: 134 LRQLRDRLQAGGYVLTIAVPAKTSD---------------------NIPWLRGYDYGGIG 172
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNS 120
++++ ++++D+ G VAP+ + +
Sbjct: 173 AVVNYMFIMAYDWHHAGSE-PGPVAPITE----------------------------IRR 203
Query: 121 NINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALT 160
I + I +P+RK+I+G+PLY +I+ +A++
Sbjct: 204 TIEFTI-AQVPSRKIIIGVPLYGYDWIIPYQPGTVASAIS 242
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 77.7 bits (192), Expect = 1e-17
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 40/133 (30%)
Query: 49 SAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCS 108
++ +Y D++ ++S+D + D H A D
Sbjct: 148 NSRWLNYGTEWEQYFDYINLMSYDRGAFTDKPVQH-ASYDDFVKD--------------- 191
Query: 109 QSHIDNHHLLNSNINYWISK-GMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPG 167
+ YW + K++ G+P Y ++ + G
Sbjct: 192 -------------LKYWNEQCRASKSKIVGGLPFYGYSWEESLQ----------GAVDDV 228
Query: 168 PFTQSPGFMAYYE 180
+ G + +
Sbjct: 229 RGIRYSGILKHLG 241
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 69.7 bits (170), Expect = 1e-14
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 48/157 (30%)
Query: 1 MKELSFAFKPRQLSLSAVVSPSQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLA 60
+ L+ A +L V+ P+ T + ++ + LA
Sbjct: 209 LTHLAEALHQARLLALLVIPPAITPGTD------------------QLGMFTHKEFEQLA 250
Query: 61 KYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNS 120
LD +++++DYS G APL + +
Sbjct: 251 PVLDGFSLMTYDYSTAHQ--PGPNAPLSW----------------------------VRA 280
Query: 121 NINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLN 157
+ K K+++G+ Y + + +
Sbjct: 281 CVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVV 317
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 40.3 bits (94), Expect = 2e-04
Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 25/132 (18%)
Query: 53 SYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
+Y + Y G D T Y + N
Sbjct: 165 AYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYNAGSGIGMDGN------------- 211
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLP--GPFT 170
N N + A ++ G P+ + L + V GLP
Sbjct: 212 ------NYNQGTADYEVAMADMLLHGFPVGGNANNIF----PALRSDQVMIGLPAAPAAA 261
Query: 171 QSPGFMAYYEVS 182
S G+++ E+
Sbjct: 262 PSGGYISPTEMK 273
Score = 31.5 bits (71), Expect = 0.14
Identities = 8/100 (8%), Positives = 25/100 (25%), Gaps = 14/100 (14%)
Query: 41 WVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNT 100
+ + + L ++ V ++ D ++ T
Sbjct: 170 GYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYNAGSGIG------------MDGNNYNQGT 217
Query: 101 IVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMP 140
+ + I + + +V++G+P
Sbjct: 218 ADYEVAMADMLLHG--FPVGGNANNIFPALRSDQVMIGLP 255
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 33.8 bits (77), Expect = 0.019
Identities = 10/121 (8%), Positives = 30/121 (24%), Gaps = 18/121 (14%)
Query: 42 VTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTI 101
+ + +++ SY ++ D+ Y G W + S
Sbjct: 167 LYNIGPAASRLSYGGVDVSDKFDYAW---NPYYGTWQVPGIALPKAQLSP---------- 213
Query: 102 VPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTV 161
+ + + + +G + + +T ++ + V
Sbjct: 214 ----AAVEIGRTSRSTVADLARRTVDEG-YGVYLTYNLDGGDRTADVSAFTRELYGSEAV 268
Query: 162 G 162
Sbjct: 269 R 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.042
Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 32/147 (21%)
Query: 6 FAFKPRQLSLSAVVSPSQTIIDQAYNVK---SLAKYLDWVTVLLKSSAYSSYNVKSLAKY 62
F K Q +++S + ID K S L W L S K+
Sbjct: 33 FDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFW---TLLSKQEEMV-----QKF 82
Query: 63 LDWVTVLSFDYSGYWDG-ATGHVAP-----LYQSQDDQYHSVNTIVP---VCRCSQSHID 113
++ VL +Y T P +Y Q D+ ++ N + V R
Sbjct: 83 VE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMP 140
LL + +I G+
Sbjct: 141 RQALLELRPAKNV--------LIDGVL 159
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 32.8 bits (74), Expect = 0.048
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 37/127 (29%)
Query: 48 SSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRC 107
S SS+ K D++ + + +S + D +
Sbjct: 167 SENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTD---------DAFV----------- 206
Query: 108 SQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLY----AQTFILADSNSHGLNALTVGP 163
I + K KV+ G I D G L
Sbjct: 207 -------------EIFKSLEKDYHPHKVLPGFSTDPLDTKHNKITRDIFIGGCTRLVQTF 253
Query: 164 GLPGPFT 170
LPG F
Sbjct: 254 SLPGVFF 260
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 29.7 bits (66), Expect = 0.49
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 25/87 (28%)
Query: 52 SSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSH 111
++ + + Y+D+ DY G +D AT + S
Sbjct: 181 TAVDGVNAGSYVDYAI---HDYGGSYDLATNYPGL----------------AKSGMVMSS 221
Query: 112 IDNHHLLNSNINYWISKGMPARKVIMG 138
N + + V G
Sbjct: 222 Q------EFNQGRYATAQALRNIVTKG 242
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 29.1 bits (65), Expect = 0.71
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 120 SNINYWISKGMPARKVIMGMP 140
+++G ++V+ G+
Sbjct: 208 RMYAAIVAQGWSPQRVVYGLL 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.73
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 57/224 (25%)
Query: 5 SFAFKPRQLS---LSAVVSPSQTII---DQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKS 58
+ F QL + P++ + + + K+L +V+ L++ S ++ +
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD-QV 83
Query: 59 LAKYLDWVTVLSFDYSGYWDGATGH--VAPLYQSQDDQYHSVNTIV----PVCRCSQSHI 112
L L F+ + Y +G H A L Q D ++ ++
Sbjct: 84 LNLCLT-----EFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 113 DNHH---LLNS----------------NIN-YW--------ISKGMPARKV-IMGMPLYA 143
D L + N + Y+ + + L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 144 QTFILADSN---SHGLNALTVGPGLPGPFTQSPG--FMAYYEVS 182
D+ + GLN L L P + +P ++ +S
Sbjct: 198 LIRTTLDAEKVFTQGLNILEW---LENP-SNTPDKDYLLSIPIS 237
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 27.9 bits (62), Expect = 2.1
Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 26/87 (29%)
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
++ L V + ++ G +Y + +
Sbjct: 164 QTALNVKDILTVVNMQYYNSGTML----GCDGKVYAQGTVDFLTALA------------- 206
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMP 140
+ G+ +V +G+P
Sbjct: 207 ---------CIQLEGGLAPSQVGLGLP 224
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 27.9 bits (63), Expect = 2.5
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNSHGLNALTVGPGLPG 167
NH++LN N WI+ G A +I +YA+T + A S G+ A V G+PG
Sbjct: 155 GNHYILNGNKF-WITNGPDADVLI----VYAKTDLAAVPASRGITAFIVEKGMPG 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.404
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,842,436
Number of extensions: 158217
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 42
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)