RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4440
(189 letters)
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
(Coccidioides immitis) [TaxId: 5501]}
Length = 330
Score = 92.2 bits (228), Expect = 3e-23
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 39/166 (23%)
Query: 37 KYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYH 96
K+L + Y+ + + KYLD+ ++++D+SG WD +GH++ ++ S
Sbjct: 170 KFLLTIASPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPE- 228
Query: 97 SVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFIL-------- 148
+ + +I G+PA K+++GMPL
Sbjct: 229 ----------------STPFSSDKAVKDYIKAGVPANKIVLGMPLDTVKIAGKKAEYITK 272
Query: 149 --------------ADSNSHGLNALTVGPGLPGPFTQSPGFMAYYE 180
N + + G G G Q ++Y E
Sbjct: 273 NGMGGGMWWESSSDKTGNESLVGTVVNGLGGTGKLEQRENELSYPE 318
>d1w9pa1 c.1.8.5 (A:39-298,A:361-433) Chitinase 1 {Aspergillus
fumigatus [TaxId: 5085]}
Length = 333
Score = 70.6 bits (172), Expect = 2e-15
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 39/166 (23%)
Query: 37 KYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYH 96
+L V ++K + + LD+ ++++DY+G + +GH A +Y +
Sbjct: 173 HFLLTVASPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLS 232
Query: 97 SVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSN---S 153
+ + ++ + + G+PA K+++GMPL S S
Sbjct: 233 TPFNT-----------------QTALDLYRAGGVPANKIVLGMPLDNPQVANLKSGYIKS 275
Query: 154 HGL-------------------NALTVGPGLPGPFTQSPGFMAYYE 180
GL + G G F QS + Y
Sbjct: 276 LGLGGAMWWDSSSDKTGSDSLITTVVNALGGTGVFEQSQNELDYPV 321
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 358
Score = 68.6 bits (167), Expect = 1e-14
Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 28 QAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDG-ATGHVAP 86
+V++ KY + +D + ++S+D+ G +D GH
Sbjct: 215 DQLSVETGRKYELTSAISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 274
Query: 87 LYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
L + T + +N +++G+ K+++G + A++
Sbjct: 275 LNAPAWKPDTAYTT------------------VNGVNALLAQGVKPGKIVVGTAMDARSV 316
Query: 147 ILADS--NSHGLNALTVG 162
L L
Sbjct: 317 QAKGKYVLDKQLGGLFSW 334
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 63.3 bits (153), Expect = 8e-13
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 37 KYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYH 96
KYL + ++ ++ + +A +DW+ ++++D++G W + H APL
Sbjct: 213 KYLLTIASGASATYAANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYD------ 266
Query: 97 SVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMP 140
P + N + + + G+PA K+++G+P
Sbjct: 267 ------PAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVP 304
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1,
saccharide binding domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 302
Score = 62.9 bits (152), Expect = 1e-12
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 50 AYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQ 109
S Y + L++ LD++ V+++D DG TG +PLY+S D S + V
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNV------- 222
Query: 110 SHIDNHHLLNSNINYWISKGMPARKVIMGMPLY 142
+S I+YW G + K+I+G P
Sbjct: 223 ---------DSIISYWKDHGAASEKLIVGFPAD 246
>d1wb0a2 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 68
Score = 57.2 bits (138), Expect = 4e-12
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEVSHRQT 186
Y ++F LA S+ + A G G PGPFT+ G +AYYEV +
Sbjct: 1 YGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKG 45
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 297
Score = 60.2 bits (145), Expect = 7e-12
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 16/87 (18%)
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
Y V +A+ LD+V ++++D+ G W+ TGH +PLY+ Q++ + + V
Sbjct: 174 YEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNV----------- 222
Query: 114 NHHLLNSNINYWISKGMPARKVIMGMP 140
++ + W+ KG PA K+I+GMP
Sbjct: 223 -----DAAVQQWLQKGTPASKLILGMP 244
>d2pi6a2 d.26.3.1 (A:240-307) Signal processing protein (SPC-40,
MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
Length = 68
Score = 55.6 bits (134), Expect = 1e-11
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEVSHR 184
+ ++F LA S + A GPG+PG FT+ G +AYYE+
Sbjct: 1 FGRSFTLASSK-TDVGAPVSGPGIPGRFTKEKGILAYYEICDF 42
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 70
Score = 54.5 bits (131), Expect = 4e-11
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEVSHRQ 185
Y TFIL+D + G+ A T+ G PG +T G +AYYEV
Sbjct: 1 YGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 44
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein
(SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
Length = 292
Score = 56.0 bits (134), Expect = 3e-10
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 17/88 (19%)
Query: 53 SYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHI 112
Y++ ++++LD++++L++D+ G W GH +PL++ +D +
Sbjct: 167 GYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA----------- 215
Query: 113 DNHHLLNSNINYWISKGMPARKVIMGMP 140
+ ++Y + G PA K++MG+P
Sbjct: 216 ------DYAVSYMLRLGAPANKLVMGIP 237
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 55.2 bits (132), Expect = 5e-10
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 36 AKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYW--DGATGHVAPLYQSQDD 93
+L +TVL ++ +++ +L +D+V + +FD+ + AP+Y
Sbjct: 186 DGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGS 245
Query: 94 QYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMP 140
+ + + + YW+S+G P+ K+ +G+
Sbjct: 246 KDRLAHLNA----------------DFQVEYWLSQGFPSNKINLGVA 276
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 54.9 bits (131), Expect = 7e-10
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 38/145 (26%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWD-GATGHVAPLYQSQDDQYHSVNTIVPVCRCSQ 109
++ + K LD+ ++ +D G W+ TGH A LY D
Sbjct: 242 AGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAP------------ 289
Query: 110 SHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILA-------------------- 149
+ + +++ G+ +++ +G+
Sbjct: 290 ---SKKFSADKAVKKYLAAGIDPKQLGLGLAADNIATTKQKTDYIVSKGLGGGMWWELSG 346
Query: 150 DSNSHGLNAL--TVGPGLPGPFTQS 172
D N + A+ PGP T++
Sbjct: 347 DRNGELVGAMSDKFRAAAPGPVTEA 371
>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 92
Score = 50.4 bits (120), Expect = 2e-09
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 142 YAQTFILADSNS---HGLNALTVGPGLPGPFTQSPGFMAYYEVSHRQTTPA 189
Y + L + + T GP G +Q PG ++Y E+ + + P
Sbjct: 1 YGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ 51
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 46.7 bits (110), Expect = 4e-07
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 54 YNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQSHID 113
+ + LD++ ++++D +G W+ T H A L+ S +
Sbjct: 195 SKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELT 254
Query: 114 NHHLLNSNIN-------YWISKGMPARKVIMGMP 140
++ + + +G+P+ K++MG+P
Sbjct: 255 RAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVP 288
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis,
Narbonin [TaxId: 3912]}
Length = 289
Score = 43.6 bits (102), Expect = 4e-06
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 42 VTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPL--YQSQDDQYHSVN 99
V + S SS+ K D++ + + +S + A + ++S + YH
Sbjct: 161 VVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHK 220
Query: 100 TIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTF 146
+ +++ + I G QTF
Sbjct: 221 VLPG--------------FSTDPLDTKHNKITRDIFIGGCTRLVQTF 253
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F1
[TaxId: 238]}
Length = 285
Score = 36.3 bits (83), Expect = 0.001
Identities = 18/151 (11%), Positives = 31/151 (20%), Gaps = 41/151 (27%)
Query: 32 VKSLAKYLD--WVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQ 89
+ + VTV + S S +V DY G +D AT +
Sbjct: 152 AYETKQAMPNKLVTVYVYSRTSSFPTAVDGVNAGSYVDYAIHDYGGSYDLATNYPGLAKS 211
Query: 90 SQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILA 149
S N + + V G +
Sbjct: 212 G----------------MVMSSQ------EFNQGRYATAQALRNIVTKGYGGH------- 242
Query: 150 DSNSHGLNALTVGPGLPGPFTQSPGFMAYYE 180
+ P + G + +
Sbjct: 243 ----------MIFAMDPNRSNFTSGQLPALK 263
>d1itxa2 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circulans
[TaxId: 1397]}
Length = 72
Score = 34.2 bits (78), Expect = 0.001
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEVSHR 184
Y + + +G G G + G +Y++
Sbjct: 1 YGRGWDGCAQAGNGQYQTCTGGSSVGTWE--AGSFDFYDLEAN 41
>d1edta_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Streptomyces plicatus, endoglycosidase H [TaxId: 1922]}
Length = 265
Score = 35.4 bits (81), Expect = 0.002
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 33 KSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQS 90
++ + + + +++ SY ++ D+ Y G W + S
Sbjct: 153 ANMPDKIISLYNIGPAASRLSYGGVDVSDKFDYAW---NPYYGTWQVPGIALPKAQLS 207
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens
[TaxId: 615]}
Length = 73
Score = 26.1 bits (57), Expect = 0.83
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
Y + + + + + G P T G + Y ++
Sbjct: 1 YGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQI 39
>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F3
[TaxId: 238]}
Length = 282
Score = 27.1 bits (59), Expect = 1.1
Identities = 10/103 (9%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 51 YSSYNVKSLAKYLDWVTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTIVPVCRCSQS 110
+ +++ +++ + S+ + Y + +P +
Sbjct: 186 AWNKIMENFRNNFNYIQLQSYGANVSRTQLM-----------MNYATGTNKIPASKMVFG 234
Query: 111 HIDNHHLLNSNINYWISKGMPARKVIMGMPLYAQTFILADSNS 153
+N + ++K P + GM +Y ++ +N+
Sbjct: 235 AYAEGGTNQAN-DVEVAKWTPTQGAKGGMMIYTYNSNVSYANA 276
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss)
[TaxId: 8022]}
Length = 129
Score = 26.4 bits (58), Expect = 1.4
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 64 DWVTVLSFDYSGYWDGATGHVAPLYQSQ-----DDQYHSVNTIVPVCRCSQSHIDNHHLL 118
+WV LS S Y AT + +Y + P + I LL
Sbjct: 27 NWVC-LSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPG-AKNVCGIRCSQLL 84
Query: 119 NSNINYWISKGMPARKVI 136
++ I A++V+
Sbjct: 85 TDDLTVAI---RCAKRVV 99
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 26.3 bits (57), Expect = 2.5
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 22 SQTIIDQAYNVKSLAKYLDWVTVLLKSSAYSSYNVKSLAKYLD 64
SQ + + +L+ Y + + V ++ + L K+ +
Sbjct: 160 SQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKFKE 202
>d1kfwa2 d.26.3.1 (A:328-388) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 61
Score = 24.4 bits (53), Expect = 2.5
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 142 YAQTFILADSNSHGLNALTVGPGLPGPFTQSPGFMAYYEV 181
Y + + A + S A PG T Y ++
Sbjct: 1 YGRGWTGAKNVSPWGPATDGAPG-----TYETANEDYDKL 35
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 25.6 bits (54), Expect = 3.4
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Query: 44 VLLKSSAYSSYNVKSLAKYLDW--VTVLSFDYSGYWDGATGHVAPLYQSQDDQYHSVNTI 101
+LL +S +V+ L ++L+ T + Y G+ V +
Sbjct: 15 LLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMNGYEF 74
Query: 102 VPVCRCSQSHIDNHHLLNSNINYWISKGMPARKVIMGMPLY 142
+ + + L V M P+Y
Sbjct: 75 LKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMY 115
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 25.0 bits (54), Expect = 3.5
Identities = 4/51 (7%), Positives = 14/51 (27%)
Query: 83 HVAPLYQSQDDQYHSVNTIVPVCRCSQSHIDNHHLLNSNINYWISKGMPAR 133
+ + SQ + + + + + + I + +P
Sbjct: 11 VIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYM 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.404
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,653
Number of extensions: 30173
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 35
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)