BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4441
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSH-----DLDERVAYVCFRSAEDA 128
YK L +S L + SDE ++D L+ E+K+FGD+S+++SH DERVA+V FR EDA
Sbjct: 169 YKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDA 228
Query: 129 RDAKHSKPRIILYDKVAVVDPVYETHASRSRPRS 162
R AKH++ R++LYD+ ++ VY SR R RS
Sbjct: 229 RAAKHARGRLVLYDRPLKIEAVY---VSRRRSRS 259
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAE 126
S P YK L +S+L P E ++D L+ ++K+FG++S+RLSH + RVAYV FR +
Sbjct: 129 STAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQ 188
Query: 127 DARDA-KHSKPR-IILYDKVAVVDPVY 151
DAR+A +H+ R ++LYD+ V+PVY
Sbjct: 189 DAREARQHALARQLLLYDRPLKVEPVY 215
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAE 126
S P YK L +S+L P E ++D L+ ++K+FG++S+RLSH + RVAYV FR +
Sbjct: 132 SAAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQ 191
Query: 127 DARDA-KHSKPR-IILYDKVAVVDPVY 151
DAR+A +H+ R ++LYD+ V+PVY
Sbjct: 192 DAREARQHALARQLLLYDRPLKVEPVY 218
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDA-KHS 134
+ V L +++D +KD L+ E+KKFG + S+++ +ER V FR ED A S
Sbjct: 337 IKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTAS 396
Query: 135 KPRIILYDKVAVV 147
K ++ ++ V
Sbjct: 397 KGKLFFGMQIEVT 409
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDA-KHS 134
+ V L ++ D +KD L+ E+KKFG + S+++ +ER V FR ED A S
Sbjct: 338 IKVQNLPVRSIDTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTAS 397
Query: 135 KPRIILYDKVAVVDPV 150
K ++ ++ V V
Sbjct: 398 KGKLFFGMQIEVTAWV 413
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 85 KASDELIKDTLYREYKKFGDLS-IRLSHDLDERVAYVCFRSAEDARDA 131
++SD +KD L+ EYKK G ++ +++ ER A VCF+ +D A
Sbjct: 564 RSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKA 611
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGD-LSIRLSHDLDER-VAYVCFRSAEDARDAKHS 134
+ ++ L+ K + +K +LY + +FG L I +S L R A+V F+ A +A S
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 135 KPRIILYDK 143
YDK
Sbjct: 72 MQGFPFYDK 80
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGD-LSIRLSHDLDER-VAYVCFRSAEDARDAKHS 134
+ ++ L+ K + +K +LY + +FG L I +S L R A+V F+ A +A S
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 135 KPRIILYDK 143
YDK
Sbjct: 72 MQGFPFYDK 80
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 22/150 (14%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGD-LSIRLSHDLDER-VAYVCFRSAEDARDAKHS 134
+ ++ L+ K + +K +LY + +FG L I +S L R A+V F+ A +A S
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71
Query: 135 KPRIILYDK----------VAVVDPVYETHASRSRPRSR-----SYSPPPPEYDRYYSRS 179
YDK ++ + T R R R + +P + + + +
Sbjct: 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAA 131
Query: 180 PVLERRPGLPPPLPHPGERPYGYGPPVLRH 209
PV+ G P PG P P ++ H
Sbjct: 132 PVVGTVQG-----PVPGMPPMTQAPRIMHH 156
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 148 DPVYETHASRSRPRSRSYSPPPPEYDRYYSRSPVLERRPGLPPPLPHPGERPYGYGPPVL 207
D T S S SYSP P + + S+S + + P PG +P GPP
Sbjct: 1409 DQSIRTRQSSECSESPSYSPQPQPFPQNSSQSAAITQ------PSSQPGSQPK-LGPPQQ 1461
Query: 208 RHEFRRDIPPHHVVLPHHEFLPRGPPLHHIPPHHPTYL 245
+ PPH V +P + F P+ PP + P H+ L
Sbjct: 1462 GAQ-----PPHQVQMPLYNF-PQSPPAQYSPMHNMGLL 1493
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 61 GRTREAVSDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFG-----DLSIRLSHDLDE 115
G TR +++ VL V L P+ + +KD E+ +FG DL + +
Sbjct: 99 GETRNRLANTASPSNVLGVFGLAPQTEERDLKD----EFSRFGKIDHVDLIMDRKTGRSK 154
Query: 116 RVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148
+V F + EDA AK + L+ K D
Sbjct: 155 CFGFVYFENKEDAVRAKEECQDLQLHGKSIRTD 187
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 77 LCVSALHPKASDELIKDTLYREYKKFGD-LSIRLSHDLDER-VAYVCFRSAEDARDAKHS 134
+ ++ L+ K + +K +LY + +FG L I +S + R A+V F+ A +A S
Sbjct: 18 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNALRS 77
Query: 135 KPRIILYDK 143
YDK
Sbjct: 78 MQGFPFYDK 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,952,822
Number of Sequences: 539616
Number of extensions: 5468307
Number of successful extensions: 21279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 19256
Number of HSP's gapped (non-prelim): 1714
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)