Query psy4441
Match_columns 249
No_of_seqs 125 out of 223
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 17:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4206|consensus 99.9 1.7E-22 3.6E-27 179.9 7.7 83 72-154 7-91 (221)
2 PLN03134 glycine-rich RNA-bind 99.6 1E-14 2.2E-19 120.5 10.7 78 72-153 32-114 (144)
3 PF00076 RRM_1: RNA recognitio 99.6 2.1E-14 4.5E-19 99.0 7.9 66 77-146 1-70 (70)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.1E-14 6.7E-19 126.8 10.5 78 72-153 267-349 (352)
5 TIGR01622 SF-CC1 splicing fact 99.5 2.5E-13 5.4E-18 125.8 13.0 75 73-152 88-167 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.7E-13 3.7E-18 122.0 9.9 77 73-153 2-83 (352)
7 KOG0114|consensus 99.5 1.4E-13 3.1E-18 113.0 8.4 79 68-150 12-92 (124)
8 PF13893 RRM_5: RNA recognitio 99.5 2.4E-13 5.2E-18 93.6 7.6 55 95-150 1-56 (56)
9 TIGR01659 sex-lethal sex-letha 99.4 3.6E-13 7.8E-18 125.6 9.8 78 71-152 104-186 (346)
10 smart00362 RRM_2 RNA recogniti 99.4 9.2E-13 2E-17 88.0 8.9 69 76-148 1-72 (72)
11 PLN03120 nucleic acid binding 99.4 6.6E-13 1.4E-17 121.1 9.7 75 74-153 4-80 (260)
12 PLN03121 nucleic acid binding 99.4 1.7E-12 3.6E-17 117.6 9.8 77 73-154 4-82 (243)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.7E-12 3.6E-17 123.9 10.1 77 72-153 273-351 (481)
14 KOG0107|consensus 99.4 8.3E-13 1.8E-17 115.8 7.2 77 73-154 9-86 (195)
15 PF14259 RRM_6: RNA recognitio 99.4 2.8E-12 6.1E-17 90.3 8.2 66 77-146 1-70 (70)
16 COG0724 RNA-binding proteins ( 99.4 3.6E-12 7.8E-17 101.8 9.3 75 74-152 115-194 (306)
17 smart00360 RRM RNA recognition 99.4 3.6E-12 7.8E-17 84.6 7.7 66 79-148 1-71 (71)
18 cd00590 RRM RRM (RNA recogniti 99.3 8.8E-12 1.9E-16 83.6 9.1 70 76-149 1-74 (74)
19 TIGR01659 sex-lethal sex-letha 99.3 4.5E-12 9.8E-17 118.2 10.0 78 73-154 192-276 (346)
20 TIGR01628 PABP-1234 polyadenyl 99.3 3.9E-12 8.4E-17 122.0 9.8 78 72-153 283-364 (562)
21 TIGR01628 PABP-1234 polyadenyl 99.3 3.8E-12 8.2E-17 122.0 9.4 72 76-151 2-78 (562)
22 TIGR01622 SF-CC1 splicing fact 99.3 5.9E-12 1.3E-16 116.7 10.1 76 74-153 186-266 (457)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.3 6.9E-12 1.5E-16 117.5 10.3 77 73-153 294-375 (509)
24 KOG4207|consensus 99.3 1.5E-12 3.2E-17 117.3 5.5 76 72-151 11-91 (256)
25 KOG0122|consensus 99.3 2.9E-11 6.3E-16 110.4 10.2 99 50-153 164-269 (270)
26 TIGR01648 hnRNP-R-Q heterogene 99.3 2.7E-11 5.8E-16 120.4 10.7 74 72-153 231-307 (578)
27 KOG0125|consensus 99.2 1.4E-11 3.1E-16 116.2 7.9 82 69-154 91-175 (376)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.8E-11 1E-15 114.0 9.7 78 72-153 94-174 (481)
29 TIGR01645 half-pint poly-U bin 99.2 5.7E-11 1.2E-15 118.8 9.9 77 72-152 202-283 (612)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.7E-10 3.7E-15 108.2 10.3 81 72-152 407-501 (509)
31 TIGR01645 half-pint poly-U bin 99.2 9.6E-11 2.1E-15 117.3 8.8 75 72-150 105-184 (612)
32 KOG0112|consensus 99.1 7.4E-11 1.6E-15 121.5 6.7 184 30-235 128-321 (975)
33 smart00361 RRM_1 RNA recogniti 99.1 3.3E-10 7.3E-15 82.0 7.6 61 88-148 2-70 (70)
34 TIGR01648 hnRNP-R-Q heterogene 99.1 3.3E-10 7.1E-15 112.7 9.9 76 72-151 56-136 (578)
35 PLN03213 repressor of silencin 99.1 4.4E-10 9.5E-15 111.2 8.7 77 73-153 9-88 (759)
36 KOG0121|consensus 99.0 7E-10 1.5E-14 94.1 7.0 90 72-165 34-128 (153)
37 KOG0105|consensus 99.0 7.8E-10 1.7E-14 98.8 7.3 78 73-154 5-84 (241)
38 KOG0113|consensus 99.0 1.4E-09 3E-14 101.9 8.9 75 72-150 99-178 (335)
39 KOG0130|consensus 99.0 1.2E-09 2.5E-14 93.7 7.5 79 72-154 70-153 (170)
40 KOG0117|consensus 99.0 8.2E-10 1.8E-14 107.5 6.9 75 72-154 257-332 (506)
41 KOG0148|consensus 99.0 2.7E-09 5.9E-14 99.2 9.1 80 69-154 159-239 (321)
42 KOG0131|consensus 98.9 9.4E-10 2E-14 97.3 5.0 77 71-151 6-87 (203)
43 KOG0111|consensus 98.9 1.1E-09 2.3E-14 100.0 5.0 80 71-154 7-91 (298)
44 KOG0127|consensus 98.9 3E-09 6.4E-14 105.9 7.6 75 74-152 117-195 (678)
45 KOG0147|consensus 98.8 3.1E-09 6.7E-14 105.1 5.7 74 77-154 281-359 (549)
46 KOG0123|consensus 98.8 6.9E-09 1.5E-13 98.1 7.9 72 77-153 79-153 (369)
47 KOG0127|consensus 98.8 9.8E-09 2.1E-13 102.3 8.4 82 68-153 286-378 (678)
48 KOG0149|consensus 98.8 6.9E-09 1.5E-13 94.3 6.3 76 73-153 11-91 (247)
49 KOG0117|consensus 98.7 6.1E-08 1.3E-12 94.7 9.4 77 70-150 79-161 (506)
50 KOG0126|consensus 98.7 2.9E-09 6.4E-14 94.6 0.3 77 74-154 35-116 (219)
51 KOG0144|consensus 98.7 2.4E-08 5.2E-13 97.3 4.9 84 67-154 117-207 (510)
52 KOG0132|consensus 98.6 2.6E-07 5.6E-12 95.0 12.0 76 73-154 420-496 (894)
53 KOG0110|consensus 98.6 8.2E-08 1.8E-12 97.4 7.4 72 77-152 518-597 (725)
54 KOG0145|consensus 98.6 2E-07 4.3E-12 87.0 8.7 78 71-152 275-357 (360)
55 KOG0108|consensus 98.6 1.6E-07 3.5E-12 91.2 8.0 76 75-154 19-99 (435)
56 KOG0148|consensus 98.5 1.4E-07 3E-12 87.9 6.6 95 74-180 62-162 (321)
57 KOG0153|consensus 98.5 1.8E-07 3.8E-12 89.2 7.3 75 72-152 226-302 (377)
58 KOG0123|consensus 98.5 2.1E-07 4.5E-12 88.1 7.7 71 76-153 3-75 (369)
59 KOG0415|consensus 98.5 1.8E-07 3.9E-12 90.0 6.5 83 72-158 237-324 (479)
60 KOG0109|consensus 98.5 1.6E-07 3.5E-12 88.2 5.2 73 73-153 77-150 (346)
61 KOG0110|consensus 98.4 1.4E-07 3.1E-12 95.7 4.2 76 74-153 613-693 (725)
62 KOG0533|consensus 98.4 4.7E-07 1E-11 82.3 7.1 76 75-154 84-163 (243)
63 KOG0109|consensus 98.4 3E-07 6.5E-12 86.5 5.7 71 76-154 4-75 (346)
64 KOG1190|consensus 98.4 5.9E-07 1.3E-11 87.5 7.0 77 74-154 297-374 (492)
65 PF11608 Limkain-b1: Limkain b 98.4 1.3E-06 2.8E-11 69.4 7.5 75 75-154 3-78 (90)
66 KOG0131|consensus 98.4 4E-07 8.7E-12 80.8 5.1 79 72-154 94-178 (203)
67 KOG1457|consensus 98.3 2.3E-06 5E-11 78.5 8.6 83 71-154 31-119 (284)
68 KOG4661|consensus 98.3 9E-07 2E-11 89.4 6.5 79 72-154 403-486 (940)
69 KOG4454|consensus 98.2 3.7E-07 7.9E-12 83.3 1.7 78 71-152 6-86 (267)
70 KOG0116|consensus 98.2 2.7E-06 5.9E-11 82.5 7.7 78 72-154 286-368 (419)
71 KOG0145|consensus 98.2 3.2E-06 6.9E-11 79.1 7.6 79 72-154 38-122 (360)
72 KOG0106|consensus 98.2 1.3E-06 2.8E-11 78.4 3.8 70 76-152 3-72 (216)
73 KOG0146|consensus 98.2 2.6E-06 5.6E-11 80.0 5.4 80 68-152 280-364 (371)
74 PF04059 RRM_2: RNA recognitio 98.1 2.2E-05 4.8E-10 62.6 8.6 75 75-151 2-85 (97)
75 KOG0124|consensus 98.1 3.8E-06 8.2E-11 81.5 4.6 69 76-148 115-188 (544)
76 KOG1457|consensus 98.0 4.1E-06 8.8E-11 76.9 3.8 68 69-140 205-273 (284)
77 KOG4208|consensus 98.0 1.2E-05 2.5E-10 72.4 6.5 77 72-152 47-129 (214)
78 KOG0151|consensus 98.0 1.7E-05 3.6E-10 81.6 8.3 80 70-153 170-257 (877)
79 KOG4660|consensus 98.0 3.4E-06 7.4E-11 84.0 3.2 69 73-146 74-143 (549)
80 KOG4212|consensus 98.0 2E-05 4.4E-10 77.8 8.4 77 72-152 42-123 (608)
81 KOG0106|consensus 98.0 8.2E-06 1.8E-10 73.3 5.3 71 72-149 97-167 (216)
82 KOG0124|consensus 97.9 1.7E-05 3.8E-10 77.0 6.1 75 71-149 207-286 (544)
83 KOG4209|consensus 97.9 3.9E-05 8.5E-10 68.9 7.8 78 72-154 99-181 (231)
84 KOG1548|consensus 97.9 5.7E-05 1.2E-09 72.4 8.4 78 74-155 134-223 (382)
85 PF08952 DUF1866: Domain of un 97.8 9.3E-05 2E-09 63.3 8.6 76 69-150 23-104 (146)
86 KOG0144|consensus 97.8 2.7E-05 5.8E-10 76.5 5.9 77 73-153 33-117 (510)
87 COG5175 MOT2 Transcriptional r 97.8 2.4E-05 5.1E-10 75.5 5.4 79 72-150 112-200 (480)
88 PF08777 RRM_3: RNA binding mo 97.7 5.5E-05 1.2E-09 60.3 4.8 71 75-151 2-78 (105)
89 KOG1548|consensus 97.6 0.00019 4.1E-09 69.0 7.6 83 72-154 263-353 (382)
90 KOG2202|consensus 97.6 4.3E-05 9.4E-10 70.4 2.9 62 92-153 82-148 (260)
91 KOG4212|consensus 97.5 0.00019 4E-09 71.2 6.0 70 74-149 536-607 (608)
92 KOG1456|consensus 97.5 0.00043 9.4E-09 67.5 8.2 81 71-154 117-200 (494)
93 KOG4205|consensus 97.4 0.00012 2.7E-09 68.7 4.2 77 73-154 5-86 (311)
94 KOG0226|consensus 97.3 0.00022 4.7E-09 66.4 4.2 71 74-148 190-265 (290)
95 KOG0120|consensus 97.3 0.00069 1.5E-08 67.5 7.6 80 72-151 397-490 (500)
96 KOG0146|consensus 97.2 0.00046 9.9E-09 65.2 4.9 77 72-152 17-100 (371)
97 KOG0147|consensus 97.2 0.00079 1.7E-08 67.5 6.7 64 88-152 463-527 (549)
98 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0013 2.9E-08 46.6 5.4 51 75-132 2-53 (53)
99 KOG4206|consensus 97.0 0.0028 6.1E-08 57.5 7.4 75 72-151 144-220 (221)
100 KOG1456|consensus 96.9 0.003 6.5E-08 61.9 7.5 78 72-154 285-364 (494)
101 PF15023 DUF4523: Protein of u 96.9 0.0038 8.2E-08 54.4 7.4 73 72-149 84-158 (166)
102 KOG4307|consensus 96.9 0.0029 6.2E-08 65.7 7.5 73 73-149 866-943 (944)
103 KOG1190|consensus 96.8 0.0021 4.5E-08 63.3 5.5 77 74-154 150-229 (492)
104 KOG4205|consensus 96.7 0.002 4.4E-08 60.6 5.0 77 73-154 96-177 (311)
105 KOG4676|consensus 96.7 0.0027 5.8E-08 62.3 5.2 76 73-153 6-89 (479)
106 KOG2314|consensus 96.5 0.0063 1.4E-07 62.0 6.6 69 72-140 56-130 (698)
107 PF04847 Calcipressin: Calcipr 96.5 0.0079 1.7E-07 52.7 6.5 64 87-152 4-70 (184)
108 KOG1855|consensus 96.4 0.0029 6.2E-08 62.5 3.9 73 72-148 229-319 (484)
109 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.011 2.5E-07 47.3 6.4 72 74-151 6-90 (100)
110 KOG4210|consensus 96.3 0.0024 5.2E-08 59.1 2.6 77 72-153 182-264 (285)
111 PF08675 RNA_bind: RNA binding 96.3 0.007 1.5E-07 48.2 4.8 56 74-137 9-64 (87)
112 KOG0112|consensus 96.3 0.0022 4.7E-08 67.6 2.3 82 71-152 4-86 (975)
113 KOG1996|consensus 96.1 0.014 3E-07 55.9 6.6 62 88-149 296-363 (378)
114 KOG0115|consensus 96.1 0.0056 1.2E-07 57.1 3.8 74 73-150 30-111 (275)
115 KOG1995|consensus 96.0 0.007 1.5E-07 58.2 4.1 83 72-158 64-159 (351)
116 KOG4211|consensus 95.9 0.021 4.7E-07 57.0 6.9 73 72-150 8-83 (510)
117 KOG0120|consensus 95.6 0.01 2.2E-07 59.4 3.6 83 71-154 286-370 (500)
118 PF11767 SET_assoc: Histone ly 95.5 0.067 1.4E-06 40.2 6.7 56 85-148 11-66 (66)
119 PF10309 DUF2414: Protein of u 95.2 0.085 1.8E-06 39.4 6.5 53 75-135 6-62 (62)
120 KOG0128|consensus 94.8 0.0028 6.1E-08 66.4 -3.2 64 76-144 669-737 (881)
121 KOG3152|consensus 94.2 0.027 5.9E-07 52.7 2.1 66 75-144 75-157 (278)
122 KOG2068|consensus 94.1 0.017 3.6E-07 55.2 0.4 77 73-150 76-160 (327)
123 KOG0129|consensus 93.0 0.34 7.4E-06 48.9 7.5 77 72-152 257-354 (520)
124 KOG0129|consensus 92.5 0.38 8.2E-06 48.6 7.0 78 70-151 366-452 (520)
125 KOG4211|consensus 92.1 0.37 8E-06 48.5 6.4 71 72-148 101-177 (510)
126 PF03467 Smg4_UPF3: Smg-4/UPF3 90.3 0.084 1.8E-06 45.6 0.0 76 73-152 6-97 (176)
127 KOG0128|consensus 90.1 0.15 3.3E-06 53.9 1.7 76 72-151 734-813 (881)
128 KOG2193|consensus 89.6 0.28 6E-06 49.2 3.0 72 75-153 2-76 (584)
129 KOG0105|consensus 89.5 2.2 4.8E-05 39.1 8.3 61 75-142 116-177 (241)
130 KOG4307|consensus 89.4 0.43 9.4E-06 50.3 4.3 78 72-153 432-514 (944)
131 KOG2416|consensus 87.5 0.62 1.3E-05 48.3 3.9 72 73-150 443-519 (718)
132 KOG1365|consensus 86.2 0.99 2.1E-05 44.9 4.4 75 74-149 280-358 (508)
133 TIGR03636 L23_arch archaeal ri 86.1 3.2 6.9E-05 32.1 6.3 59 76-136 15-75 (77)
134 PF03880 DbpA: DbpA RNA bindin 85.9 1.9 4.1E-05 31.9 4.8 62 84-150 11-74 (74)
135 PRK14548 50S ribosomal protein 85.1 3.5 7.6E-05 32.4 6.2 59 76-136 22-82 (84)
136 KOG4574|consensus 83.9 1.2 2.5E-05 47.9 3.9 80 72-153 284-374 (1007)
137 PF02714 DUF221: Domain of unk 83.6 1.2 2.5E-05 40.3 3.4 34 118-153 1-34 (325)
138 KOG4660|consensus 82.2 1.7 3.7E-05 44.3 4.2 78 76-153 390-471 (549)
139 KOG4285|consensus 81.8 2.8 6.1E-05 40.5 5.3 47 95-143 213-259 (350)
140 KOG4849|consensus 81.1 2.1 4.5E-05 42.4 4.2 74 76-149 82-158 (498)
141 KOG2135|consensus 80.8 0.99 2.2E-05 45.6 2.0 56 95-153 390-446 (526)
142 KOG1365|consensus 80.7 5 0.00011 40.2 6.7 57 74-134 161-225 (508)
143 PF07576 BRAP2: BRCA1-associat 77.1 15 0.00033 29.9 7.5 66 74-143 13-82 (110)
144 KOG1295|consensus 75.2 2.4 5.2E-05 41.6 2.8 66 76-145 9-82 (376)
145 PF14111 DUF4283: Domain of un 74.0 2.6 5.7E-05 33.6 2.3 67 82-152 24-91 (153)
146 KOG4210|consensus 72.2 2 4.4E-05 39.9 1.4 78 73-154 87-169 (285)
147 PF07292 NID: Nmi/IFP 35 domai 70.4 1 2.2E-05 35.7 -0.8 31 72-102 50-80 (88)
148 KOG2591|consensus 70.1 6.2 0.00013 41.0 4.4 71 69-146 169-245 (684)
149 PHA02762 hypothetical protein; 69.9 4.7 0.0001 30.2 2.7 24 100-123 7-33 (62)
150 KOG2135|consensus 68.8 7.9 0.00017 39.4 4.8 89 35-139 166-256 (526)
151 KOG4019|consensus 65.8 11 0.00024 34.1 4.7 95 75-176 11-108 (193)
152 PTZ00191 60S ribosomal protein 63.6 25 0.00055 30.4 6.3 61 73-135 80-142 (145)
153 KOG2295|consensus 63.5 1.7 3.7E-05 44.8 -0.9 70 75-148 232-306 (648)
154 PF14893 PNMA: PNMA 60.4 7.9 0.00017 37.1 2.9 38 69-106 13-50 (331)
155 KOG4410|consensus 59.8 36 0.00078 33.2 7.2 55 68-126 324-378 (396)
156 PF00564 PB1: PB1 domain; Int 53.9 34 0.00074 24.7 4.8 64 80-148 16-80 (84)
157 KOG2318|consensus 52.3 45 0.00097 35.0 6.9 75 72-150 172-303 (650)
158 KOG0804|consensus 51.8 53 0.0012 33.5 7.1 68 72-143 72-143 (493)
159 cd05992 PB1 The PB1 domain is 51.3 89 0.0019 22.4 6.6 52 84-137 19-70 (81)
160 KOG4483|consensus 47.9 30 0.00066 35.0 4.8 54 74-134 391-446 (528)
161 smart00666 PB1 PB1 domain. Pho 47.9 1E+02 0.0023 22.2 7.6 59 76-136 11-69 (81)
162 PF08544 GHMP_kinases_C: GHMP 47.1 72 0.0016 22.7 5.6 47 89-136 34-80 (85)
163 PRK15321 putative type III sec 45.1 15 0.00032 30.7 1.8 43 79-128 26-68 (120)
164 COG3444 Phosphotransferase sys 43.7 1.2E+02 0.0027 26.6 7.4 56 82-138 33-99 (159)
165 PF08156 NOP5NT: NOP5NT (NUC12 41.2 16 0.00034 27.3 1.3 36 95-136 29-65 (67)
166 KOG4676|consensus 38.4 8.3 0.00018 38.7 -0.7 61 74-138 151-212 (479)
167 TIGR01873 cas_CT1978 CRISPR-as 38.1 81 0.0017 25.1 4.9 52 72-124 23-74 (87)
168 KOG0156|consensus 37.8 52 0.0011 32.8 4.7 60 79-145 37-97 (489)
169 PF13820 Nucleic_acid_bd: Puta 37.3 71 0.0015 27.7 4.9 59 77-137 7-67 (149)
170 COG5594 Uncharacterized integr 35.0 35 0.00076 36.8 3.1 38 115-152 357-395 (827)
171 PF01071 GARS_A: Phosphoribosy 34.6 80 0.0017 28.2 4.9 42 107-148 41-86 (194)
172 PF03468 XS: XS domain; Inter 34.0 49 0.0011 27.1 3.3 43 87-133 30-75 (116)
173 PF15513 DUF4651: Domain of un 32.0 82 0.0018 23.9 3.9 22 88-109 4-25 (62)
174 PF05871 ESCRT-II: ESCRT-II co 30.9 1.7E+02 0.0036 24.9 6.1 50 81-134 56-105 (139)
175 PF05036 SPOR: Sporulation rel 30.9 49 0.0011 22.8 2.4 58 76-136 6-65 (76)
176 COG0724 RNA-binding proteins ( 30.8 79 0.0017 25.3 3.9 58 72-133 223-285 (306)
177 cd04932 ACT_AKiii-LysC-EC_1 AC 29.8 78 0.0017 23.5 3.5 22 86-107 52-73 (75)
178 KOG2253|consensus 29.1 35 0.00076 36.0 2.0 70 72-150 38-108 (668)
179 PF00403 HMA: Heavy-metal-asso 27.9 2E+02 0.0043 19.6 5.7 55 76-136 1-60 (62)
180 TIGR01552 phd_fam prevent-host 27.9 1.2E+02 0.0027 20.3 4.0 46 86-132 2-49 (52)
181 PF09707 Cas_Cas2CT1978: CRISP 27.0 1.1E+02 0.0024 24.2 4.1 49 72-122 23-71 (86)
182 cd06408 PB1_NoxR The PB1 domai 26.6 2.4E+02 0.0052 22.4 5.9 54 77-134 13-66 (86)
183 KOG2187|consensus 25.1 59 0.0013 33.6 2.7 40 115-154 63-102 (534)
184 cd04917 ACT_AKiii-LysC-EC_2 AC 25.1 44 0.00096 23.2 1.4 41 98-138 21-61 (64)
185 PLN02837 threonine-tRNA ligase 24.9 2.1E+02 0.0046 29.3 6.6 78 72-150 27-113 (614)
186 PF03703 bPH_2: Bacterial PH d 24.7 81 0.0017 22.1 2.7 45 89-134 35-79 (80)
187 PRK14094 psbM photosystem II r 24.6 53 0.0011 24.0 1.7 20 15-36 31-50 (50)
188 KOG3980|consensus 24.5 1.1E+02 0.0023 30.3 4.3 73 79-152 119-229 (361)
189 PF00067 p450: Cytochrome P450 24.4 1.7E+02 0.0037 25.7 5.1 45 88-137 19-64 (463)
190 PF07292 NID: Nmi/IFP 35 domai 24.3 83 0.0018 25.0 2.9 32 118-149 1-33 (88)
191 CHL00030 rpl23 ribosomal prote 24.2 2.5E+02 0.0054 22.4 5.6 49 76-126 20-83 (93)
192 COG5583 Uncharacterized small 24.1 84 0.0018 23.4 2.7 21 88-110 11-31 (54)
193 cd04883 ACT_AcuB C-terminal AC 23.3 2.5E+02 0.0055 19.2 5.8 40 97-136 20-65 (72)
194 PRK11558 putative ssRNA endonu 22.4 1.3E+02 0.0029 24.4 3.8 52 72-125 25-76 (97)
195 KOG4454|consensus 22.3 24 0.00052 33.2 -0.6 76 69-148 75-158 (267)
196 KOG4213|consensus 22.3 1.9E+02 0.004 26.6 5.0 45 85-132 117-167 (205)
197 KOG4761|consensus 21.8 1.2E+02 0.0027 28.7 3.9 18 186-207 229-246 (266)
198 cd07224 Pat_like Patatin-like 21.7 1.9E+02 0.0041 25.6 5.0 45 99-144 95-141 (233)
199 KOG1924|consensus 21.3 2E+02 0.0044 31.8 5.8 20 229-248 598-617 (1102)
200 PF11823 DUF3343: Protein of u 20.9 1E+02 0.0022 22.6 2.6 24 117-140 3-26 (73)
201 PRK05738 rplW 50S ribosomal pr 20.6 3.2E+02 0.0069 21.4 5.5 26 75-100 20-45 (92)
202 PF10384 Scm3: Centromere prot 20.4 49 0.0011 24.5 0.8 20 86-105 9-28 (58)
203 cd07996 WGR_MMR_like WGR domai 20.1 2.2E+02 0.0047 20.5 4.3 21 115-135 42-62 (74)
No 1
>KOG4206|consensus
Probab=99.87 E-value=1.7e-22 Score=179.88 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+++.||||+|||+||+.++||..||.+|++||+| .|++.++.+ +|||||+|++.+.|.+|+++|||+.||||+|+|++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4566999999999999999999999999999999 788888988 99999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
|++..
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98865
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=1e-14 Score=120.46 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||+| +|.|..+. . +|+|||+|++.|+|++|+..|++..|.|+.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~----F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDA----FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 66789999999999999999885 9999999 77777543 2 99999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998764
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.1e-14 Score=98.97 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=59.9
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc-CC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD-LD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~-~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
|||+||+..+++++|++. |++||.| .+.+..+ .+ +|+|||+|++.++|+.|+..+++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~----f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDF----FSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHH----HHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHH----HHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999875 9999999 7777764 22 99999999999999999999999999999885
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=3.1e-14 Score=126.76 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
..+.+|+|.||+..+++++|++. |++||.| +++|.++. . +|+|||+|.+.|+|.+|+.+|||+.|.|++|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~----F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQL----FGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34557999999999999998875 9999999 78888653 2 99999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9998764
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=2.5e-13 Score=125.76 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..+||||.||+..+++++|++ +|++||+| .|.|.++. . +|+|||.|.+.|+|++|+ +|++..|.|++|.|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~----~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYE----FFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEE
Confidence 478999999999999999876 59999999 78887542 2 999999999999999999 58999999999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
+.+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 98643
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.7e-13 Score=122.04 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...+|+|.||+.++++++|++ +|++||+| +|.|.++. . +|+|||.|.+.|+|+.|+..|++..|.|+.|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~----~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRS----LFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHH----HHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 467999999999999999887 49999999 78887543 2 899999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 78 ~~a~~~ 83 (352)
T TIGR01661 78 SYARPS 83 (352)
T ss_pred Eeeccc
Confidence 987643
No 7
>KOG0114|consensus
Probab=99.48 E-value=1.4e-13 Score=112.96 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
|-.+...+.|||+||+-+|+.+++ |++|++||.| .|+|.-+.+ +|.||||+++++||++|+..|+|+-+.++.+
T Consensus 12 rlppevnriLyirNLp~~ITseem----ydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEM----YDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCChhhheeEEEecCCccccHHHH----HHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 344578899999999999999885 5679999999 899987777 9999999999999999999999999999999
Q ss_pred EEeec
Q psy4441 146 VVDPV 150 (249)
Q Consensus 146 kVe~a 150 (249)
.|-+.
T Consensus 88 ~vlyy 92 (124)
T KOG0114|consen 88 VVLYY 92 (124)
T ss_pred EEEec
Confidence 99765
No 8
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=2.4e-13 Score=93.64 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=49.2
Q ss_pred HHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 95 LYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 95 Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
|+.+|++||+| .|.+..+. .++|||+|.+.++|++|+..||+..|.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999 67776554 699999999999999999999999999999999975
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=3.6e-13 Score=125.56 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.....+|+|.||+..+++++|++. |++||+| +|+|.++.. +|+|||+|++.|+|++|+.+|+++.|.+++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~l----F~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYAL----FRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 367899999999999999998875 9999999 788875532 8999999999999999999999999999999
Q ss_pred EEeeccc
Q psy4441 146 VVDPVYE 152 (249)
Q Consensus 146 kVe~a~~ 152 (249)
+|+++..
T Consensus 180 ~V~~a~p 186 (346)
T TIGR01659 180 KVSYARP 186 (346)
T ss_pred eeecccc
Confidence 9998754
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=9.2e-13 Score=88.03 Aligned_cols=69 Identities=30% Similarity=0.469 Sum_probs=61.1
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+|+|.||+..++.++|++. |++||+| .+.+..+.+ .|+|||+|.+.++|++|+..+++..|.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~----~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKEL----FSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHH----HHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 6899999999999998875 8999999 677765432 8999999999999999999999999999999874
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=6.6e-13 Score=121.11 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
.+||||.||+.++++++|++. |+.||+| .|.|..+.. +|+|||+|++.++|++|+ .|+|..|.|+.|+|+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLref----FS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEF----FSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 579999999999999999875 9999999 788887765 899999999999999999 599999999999999987
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
.+
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 65
No 12
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.7e-12 Score=117.60 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
++.||+|.||+.++++++|++. |+.||+| .|.|..+.+ .++|||+|++.++|+.|+ .|+|..|.|++|.|+++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLref----FS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDF----FSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHH----HHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 5689999999999999998875 9999999 899998877 889999999999999999 89999999999999998
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
-++.
T Consensus 79 ~~y~ 82 (243)
T PLN03121 79 GQYE 82 (243)
T ss_pred cccc
Confidence 7763
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.7e-12 Score=123.90 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....+|||.||++ ++++++|++ +|++||+| .|+|.++ ++|+|||+|.+.++|++|+..||+..|+|++|+|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~----lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFN----LFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHH----HHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3678999999997 799998776 59999999 7888764 479999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8664
No 14
>KOG0107|consensus
Probab=99.38 E-value=8.3e-13 Score=115.81 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
-..-|||-||..++++.+|+. +|++||.| +|-|+. +..|||||.|+++-||++|+..|+|..|.|..|+||++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~----~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELER----AFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHH----HHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 356799999999999999876 59999999 777777 559999999999999999999999999999999999986
Q ss_pred ccc
Q psy4441 152 ETH 154 (249)
Q Consensus 152 ~~~ 154 (249)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 543
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.8e-12 Score=90.28 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=56.9
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
|+|.||+..+++++|++ +|+.||.| .|.+..+. . +|+|||+|.+.++|++|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~----~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRN----FFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHH----HCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHH----HHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999887 49999999 67777553 2 89999999999999999999999999999874
No 16
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=3.6e-12 Score=101.77 Aligned_cols=75 Identities=27% Similarity=0.327 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
..+|+|.||+..+++++|++ +|++||.| .|.|..+. . +|+|||+|.+.++|..|+..+++..|.|++|.|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~----~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRE----LFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHH----HHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 69999999999999999776 59999999 77777653 2 9999999999999999999999999999999999
Q ss_pred eccc
Q psy4441 149 PVYE 152 (249)
Q Consensus 149 ~a~~ 152 (249)
.+..
T Consensus 191 ~~~~ 194 (306)
T COG0724 191 KAQP 194 (306)
T ss_pred cccc
Confidence 9753
No 17
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.6e-12 Score=84.62 Aligned_cols=66 Identities=33% Similarity=0.497 Sum_probs=58.4
Q ss_pred EcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 79 VSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 79 VsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
|+||+..+++++|++. |++||.| .+.+..+.. +|+|||+|.+.++|+.|+..+++..|.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~----f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELREL----FSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHH----HHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999875 8999999 677765432 8999999999999999999999999999999884
No 18
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=8.8e-12 Score=83.65 Aligned_cols=70 Identities=30% Similarity=0.445 Sum_probs=62.2
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+|+|+||+..+++++|++. |++||+| .+.+..... .|+|||.|++.++|+.|+..+++..|.|+.|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~----~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLREL----FSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHH----HHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999998875 8999999 677765543 89999999999999999999999999999999863
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=4.5e-12 Score=118.24 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecC--eee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYD--KVA 145 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffd--KpL 145 (249)
...+|+|.||+..+++++|++. |++||+| .++|..+. + +|+|||+|++.|+|++|+.+|+++.|.+ ++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~----F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTI----FGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHH----HHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 3567999999999999998875 9999999 67777543 2 7999999999999999999999998866 799
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|.++.+..
T Consensus 268 ~V~~a~~~~ 276 (346)
T TIGR01659 268 TVRLAEEHG 276 (346)
T ss_pred EEEECCccc
Confidence 999998754
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.34 E-value=3.9e-12 Score=121.96 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..+.+|||.||+..+++++|++ +|++||+| +++|..+. . +|+|||+|.+.|+|++|+.+|++..|.|++|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~----~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRE----LFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHH----HHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEE
Confidence 4677899999999999999887 49999999 78887653 2 899999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
.++...
T Consensus 359 ~~a~~k 364 (562)
T TIGR01628 359 ALAQRK 364 (562)
T ss_pred EeccCc
Confidence 998653
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.34 E-value=3.8e-12 Score=122.03 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
+|||.||+..+++++|++ +|++||.| +|+|.++.. .|+|||+|.+.++|++|+..+++..|+|++|+|.++
T Consensus 2 sl~VgnLp~~vte~~L~~----~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYD----LFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 799999999999999776 59999999 788886543 799999999999999999999999999999999987
Q ss_pred c
Q psy4441 151 Y 151 (249)
Q Consensus 151 ~ 151 (249)
.
T Consensus 78 ~ 78 (562)
T TIGR01628 78 Q 78 (562)
T ss_pred c
Confidence 4
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.33 E-value=5.9e-12 Score=116.69 Aligned_cols=76 Identities=21% Similarity=0.391 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
..+|+|.||+..+++++|++ +|++||.| .|.|..+. . +|+|||+|.+.|+|+.|+..|||+.|.|++|+|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~----~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQ----IFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHH----HHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 58999999999999999887 49999999 78887543 2 8999999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
++...
T Consensus 262 ~a~~~ 266 (457)
T TIGR01622 262 YAQDS 266 (457)
T ss_pred EccCC
Confidence 97644
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=6.9e-12 Score=117.46 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+..+|||.||+..+++++|++. |++||.| .+.|.++ +. +|+|||+|++.++|+.|+.+|+++.|.|+.|.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~----f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKEL----LESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3578999999999999998875 9999999 6777654 22 999999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+.+...
T Consensus 370 ~~a~~~ 375 (509)
T TIGR01642 370 QRACVG 375 (509)
T ss_pred EECccC
Confidence 998654
No 24
>KOG4207|consensus
Probab=99.32 E-value=1.5e-12 Score=117.25 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
+.-.+|+|-||-...+.++|.. +|.|||+| +|-|..+. + +|||||-|.+..||++|+.+|+|.+|.|+.|.
T Consensus 11 ~gm~SLkVdNLTyRTspd~Lrr----vFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRR----VFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred ccceeEEecceeccCCHHHHHH----HHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4556899999999999998765 59999999 89998653 3 99999999999999999999999999999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
||.|.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99873
No 25
>KOG0122|consensus
Probab=99.26 E-value=2.9e-11 Score=110.42 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=79.0
Q ss_pred CCCCCccchhccCCC-C-ccCCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEe
Q psy4441 50 PRYAYEYRDEYGRTR-E-AVSDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCF 122 (249)
Q Consensus 50 akYsdp~R~~~~~~~-~-~~Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtF 122 (249)
++|--|......++. + +.|+. ....||.|+||++...+++|++ +|.+||.| .|-|+++.+ +|||||+|
T Consensus 164 g~yvpP~mR~ga~~~~g~~~R~R-~D~~tvRvtNLsed~~E~dL~e----Lf~~fg~i~rvylardK~TG~~kGFAFVtF 238 (270)
T KOG0122|consen 164 GKYVPPSMRAGADRASGSDMRER-DDEATVRVTNLSEDMREDDLEE----LFRPFGPITRVYLARDKETGLSKGFAFVTF 238 (270)
T ss_pred ccccCccccCCcccccccccccC-CccceeEEecCccccChhHHHH----HhhccCccceeEEEEccccCcccceEEEEE
Confidence 577666554442211 1 22332 3778999999999999999865 69999999 788886644 99999999
Q ss_pred CCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 123 RSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 123 r~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
.+-|||..|+..|||.=...-.|+||+++..
T Consensus 239 ~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 239 ESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 9999999999999999999999999999763
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.26 E-value=2.7e-11 Score=120.41 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc--Cce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF--GDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF--G~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
...++|+|.||+..+++++|++. |++| |+| .|.+. +++|||+|++.|+|++|+.+||+..|.|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~----F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKS----FSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHH----HHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45789999999999999998875 9999 999 66655 5799999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
+++..
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 99764
No 27
>KOG0125|consensus
Probab=99.25 E-value=1.4e-11 Score=116.19 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC-C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL-D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
++...-+-|||+||+.+-.|.||+.. |.|||+| +|.|..+- + +||+||||++++||+.|..+|.|+.+-|+.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aM----F~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAM----FEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHH----HHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 33466788999999999999999985 9999999 78887553 3 9999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
.|.-+.-+.
T Consensus 167 EVn~ATarV 175 (376)
T KOG0125|consen 167 EVNNATARV 175 (376)
T ss_pred EEeccchhh
Confidence 999886654
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.21 E-value=4.8e-11 Score=113.98 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC--eeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD--KVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd--KpLkVe 148 (249)
+...+|+|.||+..+++++|++ +|++||+| .|+|.++...++|||.|++.|+|++|+..|||..|++ +.|+|+
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~----~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~ 169 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQ----IFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIE 169 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHH----HHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEE
Confidence 4456899999999999988776 59999999 7888765557899999999999999999999999986 489999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
+++..
T Consensus 170 ~sk~~ 174 (481)
T TIGR01649 170 YAKPT 174 (481)
T ss_pred EecCC
Confidence 98753
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.20 E-value=5.7e-11 Score=118.84 Aligned_cols=77 Identities=17% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|||.||+..+++++|++. |++||+| +++|.++. + +|+|||.|++.++|++|+.+||++.|.|+.|+
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~l----Fs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~Lr 277 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSV----FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR 277 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHH----HhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45679999999999999999875 9999999 78887643 2 99999999999999999999999999999999
Q ss_pred Eeeccc
Q psy4441 147 VDPVYE 152 (249)
Q Consensus 147 Ve~a~~ 152 (249)
|..+..
T Consensus 278 V~kAi~ 283 (612)
T TIGR01645 278 VGKCVT 283 (612)
T ss_pred EEecCC
Confidence 987764
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1.7e-10 Score=108.20 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCC--C----ChHHHHHHHHHHhcccCce-EEEEeccC-------CcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 72 PSYKVLCVSALHPK--A----SDELIKDTLYREYKKFGDL-SIRLSHDL-------DERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 72 ~e~rTLyVsNLneK--i----S~edLKe~Ly~eFsKFG~V-sVvV~r~~-------~rGqAFVtFr~~EdA~~Al~alng 137 (249)
...++|+|.||-.. + ..++|.+.|..+|++||+| .|+|.+.. ..|+|||+|++.|+|++|+.+|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35789999998521 1 2346777889999999999 78887642 168999999999999999999999
Q ss_pred CeecCeeeEEeeccc
Q psy4441 138 IILYDKVAVVDPVYE 152 (249)
Q Consensus 138 ~~ffdKpLkVe~a~~ 152 (249)
..|.|+.|.|++..+
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999998754
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.15 E-value=9.6e-11 Score=117.25 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|||.||+..+++++|++. |++||+| +|.|..+ ++ +|+|||+|++.|+|+.|+..|||..|.|+.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~l----F~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRA----FDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHH----HHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 56779999999999999998875 9999999 7888754 23 99999999999999999999999999999999
Q ss_pred Eeec
Q psy4441 147 VDPV 150 (249)
Q Consensus 147 Ve~a 150 (249)
|...
T Consensus 181 V~rp 184 (612)
T TIGR01645 181 VGRP 184 (612)
T ss_pred eccc
Confidence 9843
No 32
>KOG0112|consensus
Probab=99.12 E-value=7.4e-11 Score=121.48 Aligned_cols=184 Identities=33% Similarity=0.416 Sum_probs=130.9
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCccchhccCCCCccCCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEE-
Q psy4441 30 ERLSPERGHRSRARSPPSPRPRYAYEYRDEYGRTREAVSDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIR- 108 (249)
Q Consensus 30 er~~~er~r~~~~~~~ps~~akYsdp~R~~~~~~~~~~Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVv- 108 (249)
+..|.+|.++...+| +| ++-+-++..-..+.+.+++ +-.+.|.+|+++.|.++++++.++..||++|.+||.+++.
T Consensus 128 ~~~tk~r~~gg~s~s-~s-~~~~gss~s~~~~~e~~g~-d~~d~y~~l~e~~~~~~~sed~v~p~~~~E~~k~gd~s~ed 204 (975)
T KOG0112|consen 128 QEDTKNRASGGDSRS-DS-RSEEGSSSSNEDSDEQPGV-DEEDDYKVLSESKLHEPASEDSVEPRLYHEDKKFGDKSVED 204 (975)
T ss_pred cccccccccCCcccC-cc-ccccCCcccccccccCCCC-CcchhhhhhhhhhcCCcccccccCCCcchhhcccCCCchhh
Confidence 566666766666665 33 3445555555454444432 2236899999999999999999999999999999999766
Q ss_pred -----EeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccccCCCcCCCCCCCCCCCCCccccc-cCCcc-
Q psy4441 109 -----LSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYETHASRSRPRSRSYSPPPPEYDRYY-SRSPV- 181 (249)
Q Consensus 109 -----V~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~~~~~~~~r~rs~~~~~p~~~r~~-~~sp~- 181 (249)
..++..+..||++|...++|+.|..+-+.+.++++.++++.+...+ ..|.+ |+|+|+|. ++|..
T Consensus 205 ~sh~r~sHSPeE~~~~r~~rs~qdlr~~s~~~~~~flydr~~~~E~sp~e~-------saSrs--P~e~er~~ySnS~~g 275 (975)
T KOG0112|consen 205 SSHHRTSHSPEEYRAYRNSRSPQDLRRASHSPGRLFLYDREIKQERSPKER-------SASRS--PLESERYMYSNSLTG 275 (975)
T ss_pred cccccccCChHHHHhhhccCCcchhhhhhccccceeccccccccccCcccc-------ccccC--chhhhhccccccccc
Confidence 4455668999999999999999999999999999999999998863 35667 79999975 88886
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCC-CCccccc-ccCCCCccCCCCCCCCCCCCCCC
Q psy4441 182 LERRPGLPPPLPHPGERPYGYGPP-VLRHEFR-RDIPPHHVVLPHHEFLPRGPPLH 235 (249)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ygp~-~~~~~~~-~~~~p~~~~~~~~~~~p~~p~~~ 235 (249)
.--|.|-.|+.|. ++. +++. +...+.- +++.+. +.+++|+||.|
T Consensus 276 a~~r~Hr~P~~d~-~d~---~~~~r~~~~e~~~r~r~~~------~~~~~r~~P~~ 321 (975)
T KOG0112|consen 276 AGERGHRRPPIDV-LDS---VNGKREIDVELNQRDRRSY------EKFTGRPPPKP 321 (975)
T ss_pred cccccccCCCccc-ccc---cccccccccccchhhhcch------hhhccCCCCCC
Confidence 2223555567877 655 4433 2223333 444442 23446666654
No 33
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.3e-10 Score=82.01 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcccCce-EEE-E--eccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 88 DELIKDTLYREYKKFGDL-SIR-L--SHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~V-sVv-V--~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+++|++.+-.+..+||+| +|. | .+.. . +|+|||+|.+.++|++|+..|||..|.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467777666666699999 663 3 2322 2 9999999999999999999999999999999874
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=3.3e-10 Score=112.73 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeec-CeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILY-DKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ff-dKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| +++|.++. . +|+|||+|.+.|+|++|+..||+..|. ++.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~----F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPL----FEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHH----HHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 45689999999999999998875 9999999 78887652 2 999999999999999999999998775 77877
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
|..+.
T Consensus 132 V~~S~ 136 (578)
T TIGR01648 132 VCISV 136 (578)
T ss_pred ccccc
Confidence 76554
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.06 E-value=4.4e-10 Score=111.23 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCH--HHHHHHHHHCCCCeecCeeeEEee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSA--EDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~--EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....|||.||...+++++|+.. |+.||+| .|.|.+..++|||||.|.+. +++++|+.+|||..+.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLrav----FSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKI----FSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4578999999999999999986 9999999 78888777799999999987 789999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8654
No 36
>KOG0121|consensus
Probab=99.01 E-value=7e-10 Score=94.12 Aligned_cols=90 Identities=22% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEe--ccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLS--HDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~--r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
-.+.||||.||+.-.+++. +|++|++.|+| .|++. +..+ =|++||.|-..+||++|++-++++.|.+++|.
T Consensus 34 r~S~tvyVgNlSfyttEEq----iyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQ----IYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHH----HHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 4578999999998777766 56789999999 56665 2233 89999999999999999999999999999999
Q ss_pred EeecccccCCCcCCCCCCC
Q psy4441 147 VDPVYETHASRSRPRSRSY 165 (249)
Q Consensus 147 Ve~a~~~~~~~~~~r~rs~ 165 (249)
|++-..-.--+.+-|.+|-
T Consensus 110 ~D~D~GF~eGRQyGRG~sG 128 (153)
T KOG0121|consen 110 IDWDAGFVEGRQYGRGKSG 128 (153)
T ss_pred eeccccchhhhhhcCCCCC
Confidence 9987665544445555543
No 37
>KOG0105|consensus
Probab=99.01 E-value=7.8e-10 Score=98.78 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
...+|||-||+..|.+.+|++. |.|||.| .|.+..-.. -.+|||.|+++-||++|+..-++.-+.+..|+||++
T Consensus 5 ~~~~iyvGNLP~diRekeieDl----FyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDL----FYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHH----HhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4578999999999999998874 9999999 555543333 889999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8875
No 38
>KOG0113|consensus
Probab=99.00 E-value=1.4e-09 Score=101.85 Aligned_cols=75 Identities=25% Similarity=0.424 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+++||+|.-||-..++.+|++ +|.+||.| .|+|+++ ++ +|+|||+|++.-+...|.....|++|.|+.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrr----eF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRR----EFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHH----HHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 7899999999999999999886 59999999 7888876 33 99999999999999999999999999999999
Q ss_pred Eeec
Q psy4441 147 VDPV 150 (249)
Q Consensus 147 Ve~a 150 (249)
|++-
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 9964
No 39
>KOG0130|consensus
Probab=98.99 E-value=1.2e-09 Score=93.70 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--CC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--LD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.++-.|.|+++.+.+++++|.+. |.-||+| .|.+.-+ .. +|+|+|.+++.++|+.|+.+||+..|.|+.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~----F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDK----FADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHH----HhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 67889999999999999999886 9999999 5665422 22 99999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++.-..
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99876554
No 40
>KOG0117|consensus
Probab=98.98 E-value=8.2e-10 Score=107.54 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
..-+.|||+||...+|++.||+. |++||+| .|+..+ -+|||.|.+-++|-+||..+|+..|.|.+|.|++|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~----F~~~G~veRVkk~r----DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKL----FNEFGKVERVKKPR----DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHH----HHhccceEEeeccc----ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 66789999999999999998874 9999999 566664 49999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
|...
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 8876
No 41
>KOG0148|consensus
Probab=98.96 E-value=2.7e-09 Score=99.15 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+..+.+.|+||-|++.-+++++|++. |+.||.| .|+|-+ .+|+|||-|.++|.|..|+-.||+..+-|..+++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~----Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQT----FSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHh----cccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 44467899999999999999999987 9999999 899876 3899999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
..-++..
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9988865
No 42
>KOG0131|consensus
Probab=98.93 E-value=9.4e-10 Score=97.26 Aligned_cols=77 Identities=26% Similarity=0.350 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.+...||||.||++|+|++- ||++|-+-|.| .|.+.++.. +|+|||.|.+-|||+=|+..||.+.|||++|
T Consensus 6 rnqd~tiyvgnld~kvs~~~----l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEEL----LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHH----HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 36788999999999988766 56679999999 788887643 9999999999999999999999999999999
Q ss_pred EEeecc
Q psy4441 146 VVDPVY 151 (249)
Q Consensus 146 kVe~a~ 151 (249)
+|.-+-
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 999876
No 43
>KOG0111|consensus
Probab=98.92 E-value=1.1e-09 Score=99.98 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
++..+||||..|-+.+++ ..|-..|-.||+| .|.+..+.+ +|+|||+|...|||..|+..||+-.|||+.|
T Consensus 7 a~~KrtlYVGGladeVte----kvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTE----KVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTI 82 (298)
T ss_pred cccceeEEeccchHHHHH----HHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeE
Confidence 467899999999875554 4555679999999 898886654 9999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|.+|+...
T Consensus 83 rVN~AkP~k 91 (298)
T KOG0111|consen 83 RVNLAKPEK 91 (298)
T ss_pred EEeecCCcc
Confidence 999998765
No 44
>KOG0127|consensus
Probab=98.90 E-value=3e-09 Score=105.93 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.--|-|+||+.++++.+|+.. |++||.| .|+|.+..+ .|||||.|++.-+|.+|+..+|+..|.|++|-|++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~v----Fs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNV----FSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHH----HhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 557999999999999998875 9999999 799986544 99999999999999999999999999999999999
Q ss_pred ccc
Q psy4441 150 VYE 152 (249)
Q Consensus 150 a~~ 152 (249)
|-.
T Consensus 193 AV~ 195 (678)
T KOG0127|consen 193 AVD 195 (678)
T ss_pred ecc
Confidence 844
No 45
>KOG0147|consensus
Probab=98.85 E-value=3.1e-09 Score=105.07 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=68.0
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
|||.||+.++++++|+.+ |..||+| .|.+.++. + +||+||+|.++|+|++|+..|||+.|-|+.|+|..+.
T Consensus 281 l~vgnLHfNite~~lr~i----fepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGI----FEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhh----ccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 899999999999999986 9999999 57776653 2 9999999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 152 ETH 154 (249)
Q Consensus 152 ~~~ 154 (249)
+..
T Consensus 357 ~r~ 359 (549)
T KOG0147|consen 357 ERV 359 (549)
T ss_pred eec
Confidence 876
No 46
>KOG0123|consensus
Probab=98.85 E-value=6.9e-09 Score=98.11 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=64.7
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
|+|.||++.++..+|.+. |+.||+| +++|..+.+ +|+ ||.|++.++|++|+..+||..|.|+.|-|.+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~----f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDT----FSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHH----HHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999886665 9999999 888876544 999 99999999999999999999999999999887553
No 47
>KOG0127|consensus
Probab=98.83 E-value=9.8e-09 Score=102.30 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=68.9
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--EEEeccCC--cceEEEEeCCHHHHHHHHHHC------C
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--IRLSHDLD--ERVAYVCFRSAEDARDAKHSK------P 136 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--VvV~r~~~--rGqAFVtFr~~EdA~~Al~al------n 136 (249)
++.-.++.||.|+||+...++++|++ +|++||+| . |++.+..+ .|.|||-|++.++|++|+.+. +
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~----~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKE----HFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred cccccccceEEEecCCccccHHHHHH----HHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 67778899999999999888887766 59999999 4 44445555 999999999999999999875 3
Q ss_pred CCeecCeeeEEeecccc
Q psy4441 137 RIILYDKVAVVDPVYET 153 (249)
Q Consensus 137 g~~ffdKpLkVe~a~~~ 153 (249)
+++|.|+.|+|++|...
T Consensus 362 ~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAVTR 378 (678)
T ss_pred eEEEeccEEeeeeccch
Confidence 48899999999998654
No 48
>KOG0149|consensus
Probab=98.81 E-value=6.9e-09 Score=94.32 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E-EEEe-ccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S-IRLS-HDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s-VvV~-r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
....|+|-+|.....+++|++ -|.+||+| . |+|. +... +|++||||++.|+|+.|+...|-+ |.|+..+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~----yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-IdGR~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRR----YFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-IDGRKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHHHHH----HHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-cccccccc
Confidence 345699999999776666665 59999999 4 5554 3333 999999999999999999888887 89999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
.+|..-
T Consensus 86 nlA~lg 91 (247)
T KOG0149|consen 86 NLASLG 91 (247)
T ss_pred chhhhc
Confidence 999773
No 49
>KOG0117|consensus
Probab=98.70 E-value=6.1e-08 Score=94.74 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCee-cCe
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIIL-YDK 143 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~f-fdK 143 (249)
.+.-+-+|+|-.|+..+-+++|.- +|.+.|+| .+++.++. + +|+|||||.++|+|++|++.||+..| -||
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvp----lfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVP----LFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCCCceEEecCCCccccchhhHH----HHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 336788999999999999999887 59999999 89998772 2 99999999999999999999999755 578
Q ss_pred eeEEeec
Q psy4441 144 VAVVDPV 150 (249)
Q Consensus 144 pLkVe~a 150 (249)
.|.|..+
T Consensus 155 ~igvc~S 161 (506)
T KOG0117|consen 155 LLGVCVS 161 (506)
T ss_pred EeEEEEe
Confidence 8877754
No 50
>KOG0126|consensus
Probab=98.70 E-value=2.9e-09 Score=94.60 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.-=|||.||+-.+++.||- ..||+||+| .|.+.++. + +||||+++++.-+---|+.-|||+.|.|+.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil----~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDIL----CVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEE----EEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3459999999999999965 469999999 78887653 3 9999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
++-.+.
T Consensus 111 Hv~~Yk 116 (219)
T KOG0126|consen 111 HVSNYK 116 (219)
T ss_pred eccccc
Confidence 987764
No 51
>KOG0144|consensus
Probab=98.65 E-value=2.4e-08 Score=97.32 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=73.4
Q ss_pred cCCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCC-eec
Q psy4441 67 VSDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRI-ILY 141 (249)
Q Consensus 67 ~Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~-~ff 141 (249)
.||++.+.+-|+|.-|+-+.++++|++. |++||.| ++.|.++.. +|.|||+|.+.|-|..|+++||+. .+-
T Consensus 117 E~er~~~e~KLFvg~lsK~~te~evr~i----Fs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 117 ERERIVEERKLFVGMLSKQCTENEVREI----FSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred hhhccccchhhhhhhccccccHHHHHHH----HHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 3677788899999999999999999985 9999999 788887654 999999999999999999999986 455
Q ss_pred C--eeeEEeeccccc
Q psy4441 142 D--KVAVVDPVYETH 154 (249)
Q Consensus 142 d--KpLkVe~a~~~~ 154 (249)
| .||.|.+|..-.
T Consensus 193 Gcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQK 207 (510)
T ss_pred cCCCceEEEecccCC
Confidence 4 499999997764
No 52
>KOG0132|consensus
Probab=98.64 E-value=2.6e-07 Score=94.97 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
-.+||+|..|+-+++++||+.. |..||+| +|.+.. .+|-|||++-+-.||++|+.+|.+..|.+|.|+|.++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~----feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANL----FEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHH----HHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4789999999999999999986 9999999 665542 38999999999999999999999999999999999986
Q ss_pred ccc
Q psy4441 152 ETH 154 (249)
Q Consensus 152 ~~~ 154 (249)
...
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 655
No 53
>KOG0110|consensus
Probab=98.61 E-value=8.2e-08 Score=97.45 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=63.9
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-------cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-------ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-------rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
|+|.|||..-+.++|+. +|++.|.| +|.|.+..+ -|+|||-|+++|+|+.|+++|||+.|.|..|.|+
T Consensus 518 lfvkNlnf~Tt~e~l~~----~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLED----LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred hhhhcCCcccchhHHHH----HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 99999999777777665 59999999 888875544 3999999999999999999999999999999999
Q ss_pred eccc
Q psy4441 149 PVYE 152 (249)
Q Consensus 149 ~a~~ 152 (249)
++..
T Consensus 594 ~S~~ 597 (725)
T KOG0110|consen 594 ISEN 597 (725)
T ss_pred eccC
Confidence 9983
No 54
>KOG0145|consensus
Probab=98.58 E-value=2e-07 Score=87.04 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+..+--|.|-||.....+ ..|..+|+.||.| .|+|.++. + +|+|||++.|-++|..|+.+|||.-|.|+.|
T Consensus 275 ~~~g~ciFvYNLspd~de----~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADE----SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred CCCeeEEEEEecCCCchH----hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 344667899999985544 4567789999999 79998763 4 9999999999999999999999999999999
Q ss_pred EEeeccc
Q psy4441 146 VVDPVYE 152 (249)
Q Consensus 146 kVe~a~~ 152 (249)
+|.+-..
T Consensus 351 QVsFKtn 357 (360)
T KOG0145|consen 351 QVSFKTN 357 (360)
T ss_pred EEEEecC
Confidence 9987543
No 55
>KOG0108|consensus
Probab=98.57 E-value=1.6e-07 Score=91.19 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+++|.||+..+++++|.+. |+..|.| +++++.+.+ +|+||+.|++.|+|+.|++.||+..|.|++|+|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~----~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSI----FSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHH----HhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 89999999999999987764 9999999 888886543 99999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
+...-
T Consensus 95 ~~~~~ 99 (435)
T KOG0108|consen 95 ASNRK 99 (435)
T ss_pred ccccc
Confidence 87654
No 56
>KOG0148|consensus
Probab=98.54 E-value=1.4e-07 Score=87.93 Aligned_cols=95 Identities=21% Similarity=0.371 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.--+.|-.|...|+-++||++ |.+||+| .-+|.++. + +|++||.|-+.+||++|+..|||.-|..+.|+-.
T Consensus 62 hfhvfvgdls~eI~~e~lr~a----F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREA----FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ceeEEehhcchhcchHHHHHH----hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 456788999999999999997 9999999 56666654 4 9999999999999999999999999999999999
Q ss_pred ecccccCCCcCCCCCCCCCCCCCccccc-cCCc
Q psy4441 149 PVYETHASRSRPRSRSYSPPPPEYDRYY-SRSP 180 (249)
Q Consensus 149 ~a~~~~~~~~~~r~rs~~~~~p~~~r~~-~~sp 180 (249)
.|.-.. ++.. . -+--||.-| ..||
T Consensus 138 WATRKp-~e~n------~-~~ltfdeV~NQssp 162 (321)
T KOG0148|consen 138 WATRKP-SEMN------G-KPLTFDEVYNQSSP 162 (321)
T ss_pred ccccCc-cccC------C-CCccHHHHhccCCC
Confidence 886542 1221 1 146688877 6666
No 57
>KOG0153|consensus
Probab=98.54 E-value=1.8e-07 Score=89.19 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHH-CCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHS-KPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~a-lng~~ffdKpLkVe~ 149 (249)
-..+||||.||++.+++.+|++. |-+||+| +|+|.. .++-|||+|.+-++|+.|... ++.+++.|+.|+|.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdh----FyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDH----FYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHH----HhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34789999999999999998875 9999999 777753 267899999999999999966 778899999999997
Q ss_pred ccc
Q psy4441 150 VYE 152 (249)
Q Consensus 150 a~~ 152 (249)
...
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 766
No 58
>KOG0123|consensus
Probab=98.53 E-value=2.1e-07 Score=88.15 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=61.3
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
.|||. .++++.. ||+.|+.+|.| +|+|.++.. -|+|||+|++++||+.|+.+||...|.||+|+|-++..-
T Consensus 3 sl~vg---~~v~e~~----l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAM----LFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ceecC---CcCChHH----HHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 57888 6666666 55569999999 899986654 899999999999999999999999999999999987653
No 59
>KOG0415|consensus
Probab=98.51 E-value=1.8e-07 Score=90.02 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
++.+.|.|..||+-.++++|+- +||+||+| +-.|.++ +. -.+|||.|++.|+++.|.=.|++..|.|+.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLei----IFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEI----IFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCcceEEEEecCCcccccchhh----HHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 5678999999999999999775 59999999 5445444 33 67999999999999999999999999999999
Q ss_pred EeecccccCCCc
Q psy4441 147 VDPVYETHASRS 158 (249)
Q Consensus 147 Ve~a~~~~~~~~ 158 (249)
|+++...++..+
T Consensus 313 VDFSQSVsk~k~ 324 (479)
T KOG0415|consen 313 VDFSQSVSKVKY 324 (479)
T ss_pred eehhhhhhhhhc
Confidence 999866554333
No 60
>KOG0109|consensus
Probab=98.48 E-value=1.6e-07 Score=88.19 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
...+|+|-||.++-+.++|+.. |.+||.| .-.|. +++|||.|+..|+|.+|++.|+++.|.||+|+||++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~----fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAK----FEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhh----hcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 4568999999999999998875 9999999 43343 6899999999999999999999999999999999985
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
..
T Consensus 149 sr 150 (346)
T KOG0109|consen 149 SR 150 (346)
T ss_pred cc
Confidence 53
No 61
>KOG0110|consensus
Probab=98.44 E-value=1.4e-07 Score=95.73 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+..|.|+||+-.++..+|+++ |..||.| +|.|.+... +|+|||.|=++.+|.+|+.+|..+-|+|+-|.+|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~L----F~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKL----FTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cceeeeeccchHHHHHHHHHH----HhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 568999999998888888875 9999999 899986632 9999999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
+++.-
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 98653
No 62
>KOG0533|consensus
Probab=98.44 E-value=4.7e-07 Score=82.29 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=66.1
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
.+|+|+||+..++++||+|. |..||++ .+-|..+.. .|+|=|+|..-+||..|+..+|++.|.|++|+|+..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eL----F~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKEL----FAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHH----HHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 67999999999999999985 9999988 555554332 899999999999999999999999999999999987
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
-...
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 63
>KOG0109|consensus
Probab=98.43 E-value=3e-07 Score=86.45 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccccc
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYETH 154 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~~ 154 (249)
-|.|.||++++..++|+.. |.+||+| .--|. +.+|||..++.+.|++|++.|++..|.|+-|+|+-++...
T Consensus 4 KLFIGNLp~~~~~~elr~l----Fe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSL----FEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHH----HHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 4789999999999999975 9999999 43333 5679999999999999999999999999999999998874
No 64
>KOG1190|consensus
Probab=98.40 E-value=5.9e-07 Score=87.46 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccc
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~ 152 (249)
.-+|-|+|||+- ..-.+.||.+|+-||+| .|+|..+.+ -+|.|-+.+..+|+-|+..|+|..|+||+|+|++++-
T Consensus 297 n~vllvsnln~~---~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEE---AVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchh---ccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578999999973 33345789999999999 788887655 8899999999999999999999999999999999876
Q ss_pred cc
Q psy4441 153 TH 154 (249)
Q Consensus 153 ~~ 154 (249)
..
T Consensus 373 ~~ 374 (492)
T KOG1190|consen 373 TN 374 (492)
T ss_pred cc
Confidence 53
No 65
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.39 E-value=1.3e-06 Score=69.42 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhccc-CceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKF-GDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKF-G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
..|+|.||+.......|+.-|-.++.-+ |+| +.|. .+.|+|-|.+.|.|+.|..-|.|...||..|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV-l~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV-LSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E-EE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE-EEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4699999999999999999999999999 777 3333 588999999999999999999999999999999998554
Q ss_pred c
Q psy4441 154 H 154 (249)
Q Consensus 154 ~ 154 (249)
+
T Consensus 78 r 78 (90)
T PF11608_consen 78 R 78 (90)
T ss_dssp -
T ss_pred c
Confidence 3
No 66
>KOG0131|consensus
Probab=98.39 E-value=4e-07 Score=80.82 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEE--EEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSI--RLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsV--vV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.-+..|.|.||.. +.-+..||+.|++||.|.. .|.++. + +|+|||+|++-|.|..|+.+||+..+-++++
T Consensus 94 ~vganlfvgNLd~----~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 94 DVGANLFVGNLDP----EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccCc----chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 4457799999998 3334568889999999943 454432 3 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
.|+.++...
T Consensus 170 tv~ya~k~~ 178 (203)
T KOG0131|consen 170 TVSYAFKKD 178 (203)
T ss_pred EEEEEEecC
Confidence 999997643
No 67
>KOG1457|consensus
Probab=98.32 E-value=2.3e-06 Score=78.53 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=63.3
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeec---Cee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILY---DKV 144 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ff---dKp 144 (249)
+.+.+||.|+.|+..++..+|- .||+.|.-|-.-.++.....+ +-+|||||.+..+|..|+++|||+.|. +..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiy-nLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIY-NLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHH-HHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3678999999999999998865 345555555222456553332 789999999999999999999999765 457
Q ss_pred eEEeeccccc
Q psy4441 145 AVVDPVYETH 154 (249)
Q Consensus 145 LkVe~a~~~~ 154 (249)
|+||+++.-.
T Consensus 110 LhiElAKSNt 119 (284)
T KOG1457|consen 110 LHIELAKSNT 119 (284)
T ss_pred eEeeehhcCc
Confidence 8888887653
No 68
>KOG4661|consensus
Probab=98.32 E-value=9e-07 Score=89.37 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce--EEEEe--ccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL--SIRLS--HDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--sVvV~--r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.-++.|+|+.|+......+||. +|+|||+| .-||. ++.. +.++|||+.+.++|+.++..|..+.|.|+.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKn----lFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKN----LFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHHH----HHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 4478899999999999999887 49999999 33332 4444 99999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+-+++-.
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 99887654
No 69
>KOG4454|consensus
Probab=98.24 E-value=3.7e-07 Score=83.31 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--CCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--LDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
|.+.+||+|.||.++++++.|.| +|-+-|.| .|.|... .+..||||.|++--...-|+..+||+.|++.+++|
T Consensus 6 ae~drtl~v~n~~~~v~eelL~E----lfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSE----LFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHH----HhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhc
Confidence 36789999999999998877655 69999999 6666533 33449999999999999999999999999999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
++--+
T Consensus 82 ~~r~G 86 (267)
T KOG4454|consen 82 TLRCG 86 (267)
T ss_pred ccccC
Confidence 97543
No 70
>KOG0116|consensus
Probab=98.24 E-value=2.7e-06 Score=82.46 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEe-cc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLS-HD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~-r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
..+.+|+|.||+..++.+.|++ +|++||.| .+.|. ++ ++ .++|||+|++.++++.|+.+. -+.+.++.|.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~----~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEE----VFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHHH----HHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEE
Confidence 5667799999999999999776 59999999 44443 33 22 599999999999999999888 6669999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+--....
T Consensus 361 Veek~~~~ 368 (419)
T KOG0116|consen 361 VEEKRPGF 368 (419)
T ss_pred EEeccccc
Confidence 99766543
No 71
>KOG0145|consensus
Probab=98.23 E-value=3.2e-06 Score=79.12 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCCCe-EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKV-LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rT-LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.+.+| |-|+=|+...+.++|+. +|+..|+| +.++.++.- -|++||.+-+++||+.|+..|||.-|-.|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rS----LF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRS----LFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHH----HhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 45555 55666999999999886 59999999 888887643 7899999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|.++..+.
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999997765
No 72
>KOG0106|consensus
Probab=98.18 E-value=1.3e-06 Score=78.35 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=61.2
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccc
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~ 152 (249)
.+||.+|++++.+.+|++ +|++||+|..+..+ -|+|||.|++.-||.+|++.+|+..|.+..+.|+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~----~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVER----FFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHH----HHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 589999999999999776 59999999544444 78899999999999999999999999998888888764
No 73
>KOG0146|consensus
Probab=98.16 E-value=2.6e-06 Score=79.97 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEe--ccCC--cceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLS--HDLD--ERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~--r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
|||| ++-.|.|-.|+....|.+|-+. |-.||.| +-+|- +... +.++||.|+|+.+|+.|+.+|||+.|.=
T Consensus 280 reGP-eGCNlFIYHLPQEFgDaEliQm----F~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 280 REGP-EGCNLFIYHLPQEFGDAELIQM----FLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hcCC-CcceEEEEeCchhhccHHHHHH----hccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 7888 6678999999999999987775 9999999 64443 4333 9999999999999999999999999999
Q ss_pred eeeEEeeccc
Q psy4441 143 KVAVVDPVYE 152 (249)
Q Consensus 143 KpLkVe~a~~ 152 (249)
|.|+|++-..
T Consensus 355 KRLKVQLKRP 364 (371)
T KOG0146|consen 355 KRLKVQLKRP 364 (371)
T ss_pred hhhhhhhcCc
Confidence 9999997543
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.09 E-value=2.2e-05 Score=62.55 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCceE-EEEecc--CC--cceEEEEeCCHHHHHHHHHHCCCCeec----Ceee
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDLS-IRLSHD--LD--ERVAYVCFRSAEDARDAKHSKPRIILY----DKVA 145 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs-VvV~r~--~~--rGqAFVtFr~~EdA~~Al~alng~~ff----dKpL 145 (249)
.||.|+||+.|.+.++|.+.|...| .|+.+ +-+.-+ .+ .|+|||.|.++++|..-..+++|..+- .|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 5899999999999999999998875 38874 333322 22 999999999999999999999987653 5666
Q ss_pred EEeecc
Q psy4441 146 VVDPVY 151 (249)
Q Consensus 146 kVe~a~ 151 (249)
.|.+|.
T Consensus 80 ~i~yAr 85 (97)
T PF04059_consen 80 EISYAR 85 (97)
T ss_pred EEehhH
Confidence 666663
No 75
>KOG0124|consensus
Probab=98.06 E-value=3.8e-06 Score=81.52 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+||..|+..+.+++|+.. |..||.| +|.+.-+ .+ +|||||.|+-+|.|+-|+..||+..|.|+.|+|.
T Consensus 115 RvYVGSIsfEl~EDtiR~A----F~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRA----FDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred heeeeeeEEEechHHHHhh----ccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4899999999999999987 9999999 8888744 34 9999999999999999999999999999999997
No 76
>KOG1457|consensus
Probab=98.02 E-value=4.1e-06 Score=76.92 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~f 140 (249)
.|+..+.||+|-||....++++||+. |+.|--+ .++|...++-.+|||.|+++|.|++||..|||+.|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~----~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQL----LSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHH----HHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45577889999999999999999985 8888555 56666556688999999999999999999999865
No 77
>KOG4208|consensus
Probab=98.02 E-value=1.2e-05 Score=72.38 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc-Cce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF-GDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF-G~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.....++|..|+.-.-+..|.. .|++| |.| .++++++ +. +|+|||.|++.|.|+-|...||+..|+++-|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~----~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILN----YFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccceeecccccchhHHHHhh----hhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4555688888888666666554 58888 777 4666554 33 9999999999999999999999999999999
Q ss_pred EEeeccc
Q psy4441 146 VVDPVYE 152 (249)
Q Consensus 146 kVe~a~~ 152 (249)
.|.+...
T Consensus 123 ~c~vmpp 129 (214)
T KOG4208|consen 123 ECHVMPP 129 (214)
T ss_pred eeEEeCc
Confidence 9987644
No 78
>KOG0151|consensus
Probab=98.02 E-value=1.7e-05 Score=81.55 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEe--ccCC-----cceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLS--HDLD-----ERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~--r~~~-----rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
|-+....|||.|||.+++++.|-. .|++||.| +|+|. ++-+ +--|||.|=+-.||+.|+..|||+++.
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~----tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLR----TFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred CCCcccceeeecCCccccHHHHHH----HhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 345677899999999999988665 49999999 77776 4432 568999999999999999999999999
Q ss_pred CeeeEEeecccc
Q psy4441 142 DKVAVVDPVYET 153 (249)
Q Consensus 142 dKpLkVe~a~~~ 153 (249)
+.+|++-+.+..
T Consensus 246 ~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 EYEMKLGWGKAV 257 (877)
T ss_pred eeeeeecccccc
Confidence 999999998765
No 79
>KOG4660|consensus
Probab=98.01 E-value=3.4e-06 Score=83.97 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
..+||.|.||+..|+.++|.+. |+.||+|.. |..+.. +|+.||.|=++-+|+.|+++|++..|++|.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~----f~~yGeir~-ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRI----FGAYGEIRE-IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHH----HHhhcchhh-hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4789999999999999998875 999999953 445544 99999999999999999999999999999999
No 80
>KOG4212|consensus
Probab=98.01 E-value=2e-05 Score=77.82 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhc-ccCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYK-KFGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFs-KFG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.-++.++|+||+..+.-++||+. |. |-|+| -|.+..+ .+ +|-|.|.|++.|.+++|+..||...+.+++|+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdL----vrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDL----VREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred cccceEEEecCcchhhhHhHHHH----HHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 56788999999999999999985 44 55999 5777754 34 99999999999999999999999999999999
Q ss_pred Eeeccc
Q psy4441 147 VDPVYE 152 (249)
Q Consensus 147 Ve~a~~ 152 (249)
|.-...
T Consensus 118 vKEd~d 123 (608)
T KOG4212|consen 118 VKEDHD 123 (608)
T ss_pred EeccCc
Confidence 976544
No 81
>KOG0106|consensus
Probab=98.01 E-value=8.2e-06 Score=73.32 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
-....|-|.||...++.++|++. |.++|++..++.. .++|||.|.+.++|+.|+..|++..|+++.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~----~~~~g~~~~~~~~---~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDH----FRPAGEVTYVDAR---RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhh----hcccCCCchhhhh---ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 34455678888888888898875 9999999544443 88999999999999999999999999999999944
No 82
>KOG0124|consensus
Probab=97.92 E-value=1.7e-05 Score=77.02 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+-.+..|||..++..+|++|||.. |.-||+| .-.+.+... +|++||.|.+.++..+|+..||-|.|.|+=|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSV----FEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSV----FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHH----HHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 345778999999999999999986 9999999 677776543 9999999999999999999999999999998
Q ss_pred EEee
Q psy4441 146 VVDP 149 (249)
Q Consensus 146 kVe~ 149 (249)
+|--
T Consensus 283 RVGk 286 (544)
T KOG0124|consen 283 RVGK 286 (544)
T ss_pred eccc
Confidence 8853
No 83
>KOG4209|consensus
Probab=97.91 E-value=3.9e-05 Score=68.95 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEe--ccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLS--HDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~--r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
..-+.++|+|+.--++.++++. +|+.+|.| -|.|. ++.+ +|+|||-|.+.+.+++|+. ||+..|.++.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~----hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIEL----HFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhh----eeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 5678999999999998888554 69999999 35554 4443 9999999999999999998 999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|++.....
T Consensus 174 vt~~r~~~ 181 (231)
T KOG4209|consen 174 VTLKRTNV 181 (231)
T ss_pred eeeeeeec
Confidence 99987754
No 84
>KOG1548|consensus
Probab=97.86 E-value=5.7e-05 Score=72.44 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce--E-------EEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL--S-------IRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--s-------VvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
+..|||+||+..|+.+++.+. |+|+|=| . |++-++.. +|=|.+||=..|+.+-|+..|++..|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~----~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEV----MSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHH----HHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445999999999999998875 9999977 2 45544443 999999999999999999999999999
Q ss_pred CeeeEEeecccccC
Q psy4441 142 DKVAVVDPVYETHA 155 (249)
Q Consensus 142 dKpLkVe~a~~~~~ 155 (249)
|+.|+|+-|+.-.+
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999976543
No 85
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.84 E-value=9.3e-05 Score=63.25 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=57.2
Q ss_pred CCCCCCCeEEEcCCC-----CCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 69 DRPPSYKVLCVSALH-----PKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 69 eg~~e~rTLyVsNLn-----eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
.|| .-.|+-|+=++ ...-+++|-..|-..|..||+| .|+.. .++-||||.+.+.|-+|+ .|+|+.+.|
T Consensus 23 ~GP-pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv----~~~mwVTF~dg~sALaal-s~dg~~v~g 96 (146)
T PF08952_consen 23 QGP-PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV----GDTMWVTFRDGQSALAAL-SLDGIQVNG 96 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE----TTCEEEEESSCHHHHHHH-HGCCSEETT
T ss_pred cCC-CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe----CCeEEEEECccHHHHHHH-ccCCcEECC
Confidence 455 44566666555 3466788888999999999999 77776 468999999999999999 899999999
Q ss_pred eeeEEeec
Q psy4441 143 KVAVVDPV 150 (249)
Q Consensus 143 KpLkVe~a 150 (249)
+.|+|.+-
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99999973
No 86
>KOG0144|consensus
Probab=97.84 E-value=2.7e-05 Score=76.52 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCC-eecC--ee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRI-ILYD--KV 144 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~-~ffd--Kp 144 (249)
+.--|+|--++...|+.||++. |.+||.| .|.|.++.. +|.+||+|.+.+||.+|+.+|-++ .|=| -+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~l----Fe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLREL----FEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred hhhhheeccCCccccHHHHHHH----HHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 4456899999999999999985 9999999 788887643 999999999999999999998765 3444 37
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|.+|..-
T Consensus 109 vqvk~Ad~E 117 (510)
T KOG0144|consen 109 VQVKYADGE 117 (510)
T ss_pred eeecccchh
Confidence 777777543
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.83 E-value=2.4e-05 Score=75.45 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHH--HHhcccCce-EEEEeccCC-----cceE--EEEeCCHHHHHHHHHHCCCCeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLY--REYKKFGDL-SIRLSHDLD-----ERVA--YVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly--~eFsKFG~V-sVvV~r~~~-----rGqA--FVtFr~~EdA~~Al~alng~~ff 141 (249)
....-+||..|+.|+-++++--.|- +-|++||+| .|+|.+... .+-| ||||.+.|||..|+.+.+|.++.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3455689999999998887555553 379999999 788875431 3434 99999999999999999999999
Q ss_pred CeeeEEeec
Q psy4441 142 DKVAVVDPV 150 (249)
Q Consensus 142 dKpLkVe~a 150 (249)
|+-|+.++-
T Consensus 192 Gr~lkatYG 200 (480)
T COG5175 192 GRVLKATYG 200 (480)
T ss_pred CceEeeecC
Confidence 999998864
No 88
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=5.5e-05 Score=60.31 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC-----CCeecCeeeEEe
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP-----RIILYDKVAVVD 148 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln-----g~~ffdKpLkVe 148 (249)
-.|+|.++++.++-++||+. |++||+| -|-+.. ..-.|||=|++.++|+.|+..+. ++.+-+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~----f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEA----FSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHH----T-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHH----HHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 36899999999999998886 9999999 455543 35689999999999999997633 457788888887
Q ss_pred ecc
Q psy4441 149 PVY 151 (249)
Q Consensus 149 ~a~ 151 (249)
.+.
T Consensus 76 vLe 78 (105)
T PF08777_consen 76 VLE 78 (105)
T ss_dssp ---
T ss_pred ECC
Confidence 753
No 89
>KOG1548|consensus
Probab=97.60 E-value=0.00019 Score=68.97 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCC--C-----CChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 72 PSYKVLCVSALHP--K-----ASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 72 ~e~rTLyVsNLne--K-----iS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
-..+||-|.||=. . .-..+|++.|-.+..|||.| .|+|.-.--.|+|-|+|+|.++|..++..|+|..|.|+
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 4567899999631 1 12457888899999999999 67765434499999999999999999999999999999
Q ss_pred eeEEeeccccc
Q psy4441 144 VAVVDPVYETH 154 (249)
Q Consensus 144 pLkVe~a~~~~ 154 (249)
.|.-+++-...
T Consensus 343 ql~A~i~DG~t 353 (382)
T KOG1548|consen 343 QLTASIWDGKT 353 (382)
T ss_pred EEEEEEeCCcc
Confidence 99999986654
No 90
>KOG2202|consensus
Probab=97.58 E-value=4.3e-05 Score=70.43 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=54.8
Q ss_pred HHHHHHHhc-ccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 92 KDTLYREYK-KFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 92 Ke~Ly~eFs-KFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
-+-|+.+|. |||+| .++|..+.. .|-+||-|+.-|+|+.|+..||+--|-|++|..+++..+
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 356777888 99999 788888776 999999999999999999999999999999999987443
No 91
>KOG4212|consensus
Probab=97.48 E-value=0.00019 Score=71.19 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.-+|.|+||+..-+-+.||+. |..||.| ..-|.-..+ +| .|-|.++|+|+.|+..|++..|.++.|+|++
T Consensus 536 a~qIiirNlP~dfTWqmlrDK----fre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDK----FREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccEEEEecCCccccHHHHHHH----HHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 346999999999999998886 9999999 444432222 54 8999999999999999999999999999986
No 92
>KOG1456|consensus
Probab=97.46 E-value=0.00043 Score=67.54 Aligned_cols=81 Identities=25% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC--eeeEE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD--KVAVV 147 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd--KpLkV 147 (249)
+..++.|.++=||..-.+.. +.||.+.--.|+| .|+|.++ .-=||.|.|++.|.|+.|+.+|||..|+. +.|+|
T Consensus 117 ~~pN~VLl~TIlNp~YpItv--DVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITV--DVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCeEEEEEeecCccccch--hhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 35677788887887644433 4578889999999 6888876 35689999999999999999999986664 68999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
|+|+..+
T Consensus 194 eyAkP~r 200 (494)
T KOG1456|consen 194 EYAKPTR 200 (494)
T ss_pred EecCcce
Confidence 9998776
No 93
>KOG4205|consensus
Probab=97.45 E-value=0.00012 Score=68.67 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+...|.|-+|+...+++.|++. |++||+| ..+|.++.. +|++||+|.+.+....+|.+...+ |.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~y----f~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREY----FSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHK-LDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHH----hcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccc-cCCccccc
Confidence 6778999999999999999986 8999999 566666543 999999999999998888666655 78888888
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
..+..+.
T Consensus 80 k~av~r~ 86 (311)
T KOG4205|consen 80 KRAVSRE 86 (311)
T ss_pred eeccCcc
Confidence 7765543
No 94
>KOG0226|consensus
Probab=97.33 E-value=0.00022 Score=66.45 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce----EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL----SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V----sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.--|.|..|...++++.|-.+ |+||=.. .|+=.++++ +|++||.|++++|+..|+++|+|..+..++|++-
T Consensus 190 DfRIfcgdlgNevnd~vl~ra----f~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARA----FKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHH----HHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 445889999998998887765 8888655 244456677 9999999999999999999999999999998764
No 95
>KOG0120|consensus
Probab=97.30 E-value=0.00069 Score=67.45 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCC---CCCChHHHHHHHH---HHhcccCce-EEEEecc-CC------cceEEEEeCCHHHHHHHHHHCCC
Q psy4441 72 PSYKVLCVSALH---PKASDELIKDTLY---REYKKFGDL-SIRLSHD-LD------ERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 72 ~e~rTLyVsNLn---eKiS~edLKe~Ly---~eFsKFG~V-sVvV~r~-~~------rGqAFVtFr~~EdA~~Al~alng 137 (249)
-+.++||..|+= +-..+++.+++|. .++++||.| +|.|.+. .. -|=-||.|++.|+|+.|+.+|.|
T Consensus 397 ~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G 476 (500)
T KOG0120|consen 397 IPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG 476 (500)
T ss_pred CcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC
Confidence 567778877742 2225555555555 499999999 7888876 22 67789999999999999999999
Q ss_pred CeecCeeeEEeecc
Q psy4441 138 IILYDKVAVVDPVY 151 (249)
Q Consensus 138 ~~ffdKpLkVe~a~ 151 (249)
.+|.|+.+...+.-
T Consensus 477 rKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 477 RKFANRTVVASYYD 490 (500)
T ss_pred ceeCCcEEEEEecC
Confidence 99999999887653
No 96
>KOG0146|consensus
Probab=97.20 E-value=0.00046 Score=65.20 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCC---eecCee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRI---ILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~---~ffdKp 144 (249)
.+.+.|.|.=|+..-++||++.+ |+.||.| .+.|.+..+ +|-|||-|.+-.||+.|+++|.+- .=-...
T Consensus 17 ~~drklfvgml~kqq~e~dvrrl----f~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRL----FQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHH----hcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 37788999999999999999875 9999999 677776544 999999999999999999987653 223456
Q ss_pred eEEeeccc
Q psy4441 145 AVVDPVYE 152 (249)
Q Consensus 145 LkVe~a~~ 152 (249)
|.|.++..
T Consensus 93 LVVK~ADT 100 (371)
T KOG0146|consen 93 LVVKFADT 100 (371)
T ss_pred eEEEeccc
Confidence 77777744
No 97
>KOG0147|consensus
Probab=97.19 E-value=0.00079 Score=67.49 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccc
Q psy4441 88 DELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~ 152 (249)
+++|++.+.++.+|||+| .|-|-++-. |+-||-|.+.|+|..|..+|+|--|.||-|.+.++..
T Consensus 463 d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 463 DQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred hhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 468888888899999999 677766544 9999999999999999999999999999999998755
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.10 E-value=0.0013 Score=46.58 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=39.1
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHH
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAK 132 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al 132 (249)
++|.|+..+... .+.+...|+.||+| .+.+. .+.-.+||.|++..+|+.||
T Consensus 2 ~wI~V~Gf~~~~-----~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-----AEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-----HHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 578888888533 34445579999999 56555 33778999999999999996
No 99
>KOG4206|consensus
Probab=96.96 E-value=0.0028 Score=57.54 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=56.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec-CeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY-DKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff-dKpLkVe~ 149 (249)
....+|.+.||++-.+.+.+. .+|.+|+-. .|++. ....+.|||.|.+-.+|.-|+.+++++.+- +..|+|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~----~lf~qf~g~keir~i-~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLS----DLFEQFPGFKEIRLI-PPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHH----HHHhhCcccceeEec-cCCCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 678999999999855544443 346666444 33332 233899999999999999999999999877 77888877
Q ss_pred cc
Q psy4441 150 VY 151 (249)
Q Consensus 150 a~ 151 (249)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 100
>KOG1456|consensus
Probab=96.90 E-value=0.003 Score=61.87 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+.+-.+.|-.|+. |++- +.||.+|=.||+| .|+..++ +.|+|.|.+-+.++.+.|+..||++.|||+.|+|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~----drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNC----DRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccch----hhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 6778899999984 3443 3488899999999 6776654 489999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++.-.
T Consensus 360 SkQ~~ 364 (494)
T KOG1456|consen 360 SKQNF 364 (494)
T ss_pred ccccc
Confidence 87754
No 101
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.90 E-value=0.0038 Score=54.37 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=55.3
Q ss_pred CCCCeEEEcCCCCCCCh-HHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASD-ELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~-edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
..-.||-|+=|.-.... +|+ +.+....+.||.| +|.+.+ +..|.|||++..+|=+|+.|++.- --|..+++..
T Consensus 84 pPMsTIVVRWlkknm~~~edl-~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~-~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDL-KSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSR-APGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHH-HHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCC-CCCceEEeec
Confidence 35568888777655444 455 4556678999999 888876 889999999999999999998874 4555565543
No 102
>KOG4307|consensus
Probab=96.87 E-value=0.0029 Score=65.72 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce--EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL--SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..+.|.|+|++.+++.+||-+- |.-|=-+ +|++-.+.+ .|-|-|.|++.|+|+.|...|++..|+++.|.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~F----F~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEF----FNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CCeEEEecCCCccccHHHHHHH----hcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 3468999999999999998864 8888555 566665544 899999999999999999999999999999988
Q ss_pred ee
Q psy4441 148 DP 149 (249)
Q Consensus 148 e~ 149 (249)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 64
No 103
>KOG1190|consensus
Probab=96.79 E-value=0.0021 Score=63.32 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCceE-EEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC--eeeEEeec
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLS-IRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD--KVAVVDPV 150 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs-VvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd--KpLkVe~a 150 (249)
--.+-|-|+---+|.|.|.+ +|++||.|. |+---++..=||.|-|.+++.|+.|+.+|+|.-+++ +.|+|+++
T Consensus 150 vLr~iie~m~ypVslDVLHq----vFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQ----VFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHH----HHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 33455778888889888776 599999994 333333337799999999999999999999876665 68999987
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
+-..
T Consensus 226 klt~ 229 (492)
T KOG1190|consen 226 KLTD 229 (492)
T ss_pred hccc
Confidence 6554
No 104
>KOG4205|consensus
Probab=96.74 E-value=0.002 Score=60.60 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..+.|.|..|+..++++++|+. |.+||.| .+++..+.. +|++||+|.+-++++.++ ..--..|-++.+.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~y----fe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vev 170 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDY----FEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEV 170 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhh----hhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeE
Confidence 4668999999999999999986 9999999 555554433 999999999998888777 44445689999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
--|....
T Consensus 171 krA~pk~ 177 (311)
T KOG4205|consen 171 KRAIPKE 177 (311)
T ss_pred eeccchh
Confidence 8775544
No 105
>KOG4676|consensus
Probab=96.65 E-value=0.0027 Score=62.31 Aligned_cols=76 Identities=22% Similarity=0.450 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-------cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-------ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-------rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
....|.|.||...++.+.|. .+|.-.|+| .+.|.-+.. .++|||-|.+.+.+..|- .|-+++|.|+.
T Consensus 6 ~~~vIqvanispsat~dqm~----tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdra 80 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQ----TLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRA 80 (479)
T ss_pred CCceeeecccCchhhHHHHH----HHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeee
Confidence 34499999999988877765 569999999 788765322 899999999999888776 67778899999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|.|-++.+.
T Consensus 81 liv~p~~~~ 89 (479)
T KOG4676|consen 81 LIVRPYGDE 89 (479)
T ss_pred EEEEecCCC
Confidence 999888763
No 106
>KOG2314|consensus
Probab=96.46 E-value=0.0063 Score=61.98 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCC--CCCChHHHHHHHHHHhcccCce-EEEEe--ccCC-cceEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 72 PSYKVLCVSALH--PKASDELIKDTLYREYKKFGDL-SIRLS--HDLD-ERVAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 72 ~e~rTLyVsNLn--eKiS~edLKe~Ly~eFsKFG~V-sVvV~--r~~~-rGqAFVtFr~~EdA~~Al~alng~~f 140 (249)
.....|.|.|++ .-+..+.||..|-.+|+|+|+| -+.+. -.++ .|++|+.|.+..+|+.|+..++|..|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 345678899988 4466889999999999999999 45554 2334 99999999999999999999999854
No 107
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.46 E-value=0.0079 Score=52.69 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC--CCeecCeeeEEeeccc
Q psy4441 87 SDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP--RIILYDKVAVVDPVYE 152 (249)
Q Consensus 87 S~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln--g~~ffdKpLkVe~a~~ 152 (249)
...++++.|..+|.+|+.+ +..+.+.-++ ..|+|.+.++|+.|+..|. ++.|.|+.++|-++..
T Consensus 4 ~~~~~~~~l~~l~~~~~~~~~~~~L~sFrR--i~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 4 FQPDNLAELEELFSTYDPPVQFSPLKSFRR--IRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -----HHHHHHHHHTT-SS-EEEEETTTTE--EEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred cChhhHHHHHHHHHhcCCceEEEEcCCCCE--EEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3467788899999999999 7777665544 8999999999999999999 9999999999998843
No 108
>KOG1855|consensus
Probab=96.43 E-value=0.0029 Score=62.47 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-----------------cceEEEEeCCHHHHHHHHH
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-----------------ERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-----------------rGqAFVtFr~~EdA~~Al~ 133 (249)
-..+||-+.||++.-+- |.|-.+|+.+|.| +|+|++-+. +--|+|.|++.+.|.+|..
T Consensus 229 l~srtivaenLP~Dh~~----enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSY----ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHH----HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 47899999999985555 5566679999999 899987621 2248999999999999998
Q ss_pred HCCCCeecCeeeEEe
Q psy4441 134 SKPRIILYDKVAVVD 148 (249)
Q Consensus 134 alng~~ffdKpLkVe 148 (249)
.||.+.-.-+-|+|-
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 886654444444443
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.39 E-value=0.011 Score=47.33 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEE--ec----------cCCcceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRL--SH----------DLDERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV--~r----------~~~rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
...|-|-..++.++...|+ +|++||+|.-.. .+ ......--|+|++..+|..|| ..||.+|.
T Consensus 6 ~~wVtVFGfp~~~~~~Vl~-----~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQVLR-----HFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFS 79 (100)
T ss_dssp CCEEEEE---GGGHHHHHH-----HHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEET
T ss_pred CeEEEEEccCHHHHHHHHH-----HHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEc
Confidence 3457788888766666665 699999993222 11 122667789999999999999 78888888
Q ss_pred CeeeE-Eeecc
Q psy4441 142 DKVAV-VDPVY 151 (249)
Q Consensus 142 dKpLk-Ve~a~ 151 (249)
|.-|- |.+.+
T Consensus 80 g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 GSLMVGVKPCD 90 (100)
T ss_dssp TCEEEEEEE-H
T ss_pred CcEEEEEEEcH
Confidence 86554 55553
No 110
>KOG4210|consensus
Probab=96.34 E-value=0.0024 Score=59.06 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCCCeEE-EcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLC-VSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLy-VsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
....+++ |.||+..++.++|+ ..|..+|.| .|.+.-.. . +|+|||.|.+..++..|+.. +.-.+++.++
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~----~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLK----EHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL 256 (285)
T ss_pred CccccceeecccccccchHHHh----hhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence 4445555 99999999999988 469999999 67775332 2 99999999999999999988 8888999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
.|+.....
T Consensus 257 ~~~~~~~~ 264 (285)
T KOG4210|consen 257 RLEEDEPR 264 (285)
T ss_pred ccccCCCC
Confidence 99877664
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.33 E-value=0.007 Score=48.18 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
....||+ ++..-+-.|| +.+|+-||.|.|.+.- ...|||.+.+.++|+.|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI----~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDI----YQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHH----HHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhH----HHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 3456777 7766666665 4579999999999986 67899999999999999988753
No 112
>KOG0112|consensus
Probab=96.29 E-value=0.0022 Score=67.64 Aligned_cols=82 Identities=17% Similarity=0.039 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+++.-.|.|+||...+.+-.++..++++|.+||++ .+.|..+..++++.+.|+.-+.|.+|+.+--+..|+|..+.+.-
T Consensus 4 ~~~~~~~~~~~l~~R~vd~c~~~~~r~~~~~~gd~~~~~~~~k~~er~g~~~fr~~~~~~~~~~~~~~k~f~g~~~e~~~ 83 (975)
T KOG0112|consen 4 TNEEIMLIIRSLSDRIVDICVDWWDRSAVITLGDMEPANLLLKRMERVGRNNFREHKVAVDFCSDRFSKYFIGRGKENIE 83 (975)
T ss_pred cccCcceeeccccccccchhhhhcchhhhhhccccccchhhcchhhhcchhhhhhhcchhhhhhhhhhhhhcccccccee
Confidence 45566899999999999999999999999999999 78888888899999999999999999999888889998876665
Q ss_pred ccc
Q psy4441 150 VYE 152 (249)
Q Consensus 150 a~~ 152 (249)
+..
T Consensus 84 ~~g 86 (975)
T KOG0112|consen 84 VAG 86 (975)
T ss_pred eec
Confidence 533
No 113
>KOG1996|consensus
Probab=96.13 E-value=0.014 Score=55.87 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcccCce-EEEEeccC---C--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 88 DELIKDTLYREYKKFGDL-SIRLSHDL---D--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~V-sVvV~r~~---~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+++|++-.-.+..|||+| .|+|.-.. . .---||.|+++|+|.+|+-.|||..|.|+.++-.+
T Consensus 296 d~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 296 DEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred cHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 567777777899999999 55554222 2 33479999999999999999999999999887654
No 114
>KOG0115|consensus
Probab=96.11 E-value=0.0056 Score=57.07 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCceE--EEEeccC-C-cceEEEEeCCHHHHHHHHHHC--CCC--eecCee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDLS--IRLSHDL-D-ERVAYVCFRSAEDARDAKHSK--PRI--ILYDKV 144 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs--VvV~r~~-~-rGqAFVtFr~~EdA~~Al~al--ng~--~ffdKp 144 (249)
....|||.||+.-++-+.+.+. |+.||+|+ |+++-+. + .|-++|-|.+.-.|.+|++.+ .++ ...+.+
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~----f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p 105 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQA----FRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRP 105 (275)
T ss_pred ccceEEEEecchhhhhHHHHHh----hhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCc
Confidence 3489999999999999988876 99999993 4444333 3 788999999999999999886 333 245566
Q ss_pred eEEeec
Q psy4441 145 AVVDPV 150 (249)
Q Consensus 145 LkVe~a 150 (249)
.-|++.
T Consensus 106 ~~VeP~ 111 (275)
T KOG0115|consen 106 VGVEPM 111 (275)
T ss_pred cCCChh
Confidence 667664
No 115
>KOG1995|consensus
Probab=96.02 E-value=0.007 Score=58.16 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--------EEEeccCC----cceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--------IRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--------VvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
....||+|.+|++.+++++|.+ .|.+.|.| . |.|-++.+ ++-|-|+|.++..|+.|+.-+++.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~----~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNAD----FFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccceeeccCccchHHHHHH----HHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 5677999999999998888665 49999888 1 22222222 899999999999999999999999
Q ss_pred eecCeeeEEeecccccCCCc
Q psy4441 139 ILYDKVAVVDPVYETHASRS 158 (249)
Q Consensus 139 ~ffdKpLkVe~a~~~~~~~~ 158 (249)
.|-+..|+|.+|.....-++
T Consensus 140 df~gn~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTGVES 159 (351)
T ss_pred cccCCCchhhhhhhccCccc
Confidence 99999999999987653333
No 116
>KOG4211|consensus
Probab=95.87 E-value=0.021 Score=57.04 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc-CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD-LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~-~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+...|.++.|+..+|+++|.+- |+-. .| .+++.+. .+ .|-|||+|++.||+++|+ .++...+-.+=|.|=
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~F----f~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDF----FSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHH----HhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 46778999999999999999873 5555 56 6777776 44 999999999999999999 556666666666665
Q ss_pred ec
Q psy4441 149 PV 150 (249)
Q Consensus 149 ~a 150 (249)
.+
T Consensus 82 ~~ 83 (510)
T KOG4211|consen 82 TA 83 (510)
T ss_pred cc
Confidence 55
No 117
>KOG0120|consensus
Probab=95.64 E-value=0.01 Score=59.38 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEecc--CCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD--LDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~--~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+.....++|.||+..+.++.++|.| .+|..+.....+.... +.+|+||-.|.++--...|+..|||..+.|+.|.|+
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHH-HhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3556679999999999999999963 3444444442222222 239999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
.|..-.
T Consensus 365 ~A~~g~ 370 (500)
T KOG0120|consen 365 RAIVGA 370 (500)
T ss_pred hhhccc
Confidence 886653
No 118
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.49 E-value=0.067 Score=40.22 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 85 KASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 85 KiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+++.+++|.. +++|+-..|...++ | =||+|.+.+||+....+.++..||+-.|.+|
T Consensus 11 ~~~v~d~K~~----Lr~y~~~~I~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKR----LRKYRWDRIRDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHH----HhcCCcceEEecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 4677888876 89998887777653 3 5999999999999999999999999888764
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.22 E-value=0.085 Score=39.41 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhccc----CceEEEEeccCCcceEEEEeCCHHHHHHHHHHC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKF----GDLSIRLSHDLDERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKF----G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~al 135 (249)
..|+|..+++ +|-++|+.- |+.| |...|.+.- .--|=|+|.+.+.|..||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y----~~~y~~~~~~~~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAY----FSEYFDEEGPFRIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHH----HHHhcccCCCceEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 4699999976 888899876 5555 666788875 334889999999999999875
No 120
>KOG0128|consensus
Probab=94.80 E-value=0.0028 Score=66.41 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=50.3
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-E--EEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-S--IRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--VvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
++.|+||+.+.+..+|.+ .|+.||-| . |++..+.+ +|.|||.|...++|..|+ ++....||+|.
T Consensus 669 ~~fvsnl~~~~~~~dl~~----~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV-~f~d~~~~gK~ 737 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSE----RFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV-AFRDSCFFGKI 737 (881)
T ss_pred HHHHhhcchhhcCchhhh----hcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh-hhhhhhhhhhh
Confidence 467999999999999886 49999888 3 33334444 999999999999999999 55555577753
No 121
>KOG3152|consensus
Probab=94.20 E-value=0.027 Score=52.65 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=53.7
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----------------cceEEEEeCCHHHHHHHHHHCCC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----------------ERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----------------rGqAFVtFr~~EdA~~Al~alng 137 (249)
..||++||+.......|+++ |+.||+| .|-+..... -.-+||.|.+.-.|+.....||+
T Consensus 75 GVvylS~IPp~m~~~rlRei----l~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREI----LSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred eEEEeccCCCccCHHHHHHH----HHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 57999999999999999986 6788888 666652211 12489999999999999999999
Q ss_pred CeecCee
Q psy4441 138 IILYDKV 144 (249)
Q Consensus 138 ~~ffdKp 144 (249)
.+|.|+.
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9998873
No 122
>KOG2068|consensus
Probab=94.05 E-value=0.017 Score=55.21 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-----cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-----ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-----rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
..+-+||..|+.++-++.+=+. -.-|.+||.| .|++.++. . ---+||||+..|+|..|+....|+++.++.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~-~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLER-TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhC-cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456788889987644443222 1358999999 78887754 1 334999999999999999999999999998
Q ss_pred eEEeec
Q psy4441 145 AVVDPV 150 (249)
Q Consensus 145 LkVe~a 150 (249)
+++.+.
T Consensus 155 lka~~g 160 (327)
T KOG2068|consen 155 LKASLG 160 (327)
T ss_pred hHHhhC
Confidence 666543
No 123
>KOG0129|consensus
Probab=93.03 E-value=0.34 Score=48.93 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-------cc---eEEEEeCCHHHHHHHHHH---CCCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-------ER---VAYVCFRSAEDARDAKHS---KPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-------rG---qAFVtFr~~EdA~~Al~a---lng~ 138 (249)
.-.+.|.|..|+..|+++.|... |..||.|.|.+.++.+ +| ++|++|++-.+.+.-+.+ -.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~----F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINAS----FGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhh----cccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 45667999999999999999987 9999999888873321 67 999999987766665544 1122
Q ss_pred ee--------cCeeeEEeeccc
Q psy4441 139 IL--------YDKVAVVDPVYE 152 (249)
Q Consensus 139 ~f--------fdKpLkVe~a~~ 152 (249)
.| .+|.++|-++.-
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~l 354 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVL 354 (520)
T ss_pred eEEEEecCcccccceeEEeeEe
Confidence 22 356666666644
No 124
>KOG0129|consensus
Probab=92.47 E-value=0.38 Score=48.60 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHH----CCCCee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHS----KPRIIL 140 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~a----lng~~f 140 (249)
..+..+||.|-.|+-.++.++|-.++..+ ||-| .+-|--+.+ +|.|=|||.|..+=-+|+.+ ++...
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d- 441 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTD- 441 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHh---cCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccc-
Confidence 34899999999999999999988875555 5788 566655433 99999999999999999977 66664
Q ss_pred cCeeeEEeecc
Q psy4441 141 YDKVAVVDPVY 151 (249)
Q Consensus 141 fdKpLkVe~a~ 151 (249)
++|.|.|.+-.
T Consensus 442 ~~KRVEIkPYv 452 (520)
T KOG0129|consen 442 IDKRVEIKPYV 452 (520)
T ss_pred cceeeeeccee
Confidence 68888888754
No 125
>KOG4211|consensus
Probab=92.08 E-value=0.37 Score=48.55 Aligned_cols=71 Identities=23% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--EEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--IRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--VvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
...-+|.++.|+...++++|.+- |+-- +| . |.+..+ .. .|-|||+|++.|.|++||.- +.+.+-.+=|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~F----FaGL-~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYI 174 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEF----FAGL-EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYI 174 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHH----hcCC-cccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceE
Confidence 46778999999999999999973 4444 33 2 222222 22 88999999999999999943 3333455555
Q ss_pred EEe
Q psy4441 146 VVD 148 (249)
Q Consensus 146 kVe 148 (249)
.|-
T Consensus 175 EvF 177 (510)
T KOG4211|consen 175 EVF 177 (510)
T ss_pred Eee
Confidence 554
No 126
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.32 E-value=0.084 Score=45.61 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcc-cCce---E-EE--Eecc-C---CcceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKK-FGDL---S-IR--LSHD-L---DERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsK-FG~V---s-Vv--V~r~-~---~rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
+..-|-|++|+..++++++.+. .+. +|+- . +. +... . .-.-|||.|.+.+++.+=...++|..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~----i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQ----ISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCC----CSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHH----hhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4557999999999999997763 222 3333 1 11 2211 1 1456999999999999999999998887
Q ss_pred Ce-----eeEEeeccc
Q psy4441 142 DK-----VAVVDPVYE 152 (249)
Q Consensus 142 dK-----pLkVe~a~~ 152 (249)
|. +..|+.|..
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 76 445666544
No 127
>KOG0128|consensus
Probab=90.14 E-value=0.15 Score=53.94 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEE--eccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRL--SHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV--~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.....|-|+|++.+-++++++.+ |+++|++ ++++ .++++ +|.|||-|.+..+|..++..+....+....+.|
T Consensus 734 ~gK~~v~i~g~pf~gt~e~~k~l----~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 734 FGKISVAISGPPFQGTKEELKSL----ASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred hhhhhhheeCCCCCCchHHHHhh----ccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 34567889999999999998875 9999999 5433 35666 999999999999999999888888788888888
Q ss_pred eecc
Q psy4441 148 DPVY 151 (249)
Q Consensus 148 e~a~ 151 (249)
+.+-
T Consensus 810 ~vsn 813 (881)
T KOG0128|consen 810 QVSN 813 (881)
T ss_pred cccC
Confidence 7743
No 128
>KOG2193|consensus
Probab=89.62 E-value=0.28 Score=49.23 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEecc--CCcceEEEEeCCHHHHHHHHHHCCC-CeecCeeeEEeecc
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD--LDERVAYVCFRSAEDARDAKHSKPR-IILYDKVAVVDPVY 151 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~--~~rGqAFVtFr~~EdA~~Al~alng-~~ffdKpLkVe~a~ 151 (249)
..|||-||++.++..+|+.. | |+-.+-..+. .+.|+|||..-+..-|..|...+++ ..+-|+.+.|+.+-
T Consensus 2 nklyignL~p~~~psdl~sv----f---g~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESV----F---GDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHH----h---ccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 35899999999999999865 3 3331111111 2289999999999999999999877 47999999999875
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
..
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 129
>KOG0105|consensus
Probab=89.49 E-value=2.2 Score=39.11 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=50.5
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
..+.|+.|+...|-++||+. ..+-|+| --.|.+ .|++.|.|-+.||.+=|++.|....|..
T Consensus 116 ~RVvVsGLp~SgSWQDLKDH----mReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDH----MREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeEEEecCCCCCchHHHHHH----HHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccC
Confidence 34779999999999999986 6778999 344444 7799999999999999999988776543
No 130
>KOG4307|consensus
Probab=89.42 E-value=0.43 Score=50.25 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E-EEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S-IRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s-VvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
..+..|||..|+....+.++-+. |++--.| + |.|....+ ++.|||.|.+.+++-.|....-.+.+..+.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~----f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNK----FMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhh----hhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 45778999999988777776653 8877777 3 77765433 99999999999999999988888888999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|....++
T Consensus 508 v~si~~~ 514 (944)
T KOG4307|consen 508 VDSIADY 514 (944)
T ss_pred eechhhH
Confidence 9876443
No 131
>KOG2416|consensus
Probab=87.49 E-value=0.62 Score=48.26 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcc-cCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCe---ecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKK-FGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRII---LYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsK-FG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~---ffdKpLkV 147 (249)
..+.|||.||=--.+...||+. ..+ -|.| .. ..+.-+--|||.|.+.++|-+-..||+|+. =..|-|.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkel----L~rtgg~Vee~--WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKEL----LGRTGGNVEEF--WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHH----HhhccCchHHH--HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3689999999999999998886 453 4555 22 222225569999999999999999999985 35677888
Q ss_pred eec
Q psy4441 148 DPV 150 (249)
Q Consensus 148 e~a 150 (249)
+++
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 776
No 132
>KOG1365|consensus
Probab=86.17 E-value=0.99 Score=44.95 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=52.7
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhc---ccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYK---KFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFs---KFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
..-|.++.|+-.++.++|-+-|- +|. +|--|.+++...+. .|-|||-|++.|+|..|.....+.....+-|.|=+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHH-HHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 45688899999999998876432 222 23234445545444 99999999999999999977666655566666554
No 133
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=86.08 E-value=3.2 Score=32.06 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=46.1
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~aln 136 (249)
.-|+-..+.+++..+||+.+..+|.- +| .|....... ..=|||+|..-++|.+.-..++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V--kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV--KVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhc
Confidence 46777889999999999999999954 55 555553333 5679999999999998776554
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.89 E-value=1.9 Score=31.95 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCCChHHHHHHHHHHhccc-Cce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 84 PKASDELIKDTLYREYKKF-GDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 84 eKiS~edLKe~Ly~eFsKF-G~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
++++..+|-..|..+.+-- -+| .|.|. ..++||.-... .|++++.+|++..+.|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577778777765554332 233 45554 67899988766 599999999999999999999975
No 135
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=85.13 E-value=3.5 Score=32.36 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=46.1
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~aln 136 (249)
.-|+-..+.+++..+||+.+..+|.- +| +|....... ..=|||+|..-++|.+....++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~V--kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDV--KVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhhc
Confidence 45677788999999999999999954 55 566554433 6679999999999998876554
No 136
>KOG4574|consensus
Probab=83.86 E-value=1.2 Score=47.88 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCChHHHH--------HHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCe--e
Q psy4441 72 PSYKVLCVSALHPKASDELIK--------DTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRII--L 140 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLK--------e~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~--f 140 (249)
....|+-|+|+-+-.-...++ -.|-.+|++||+| ++...++ --.|.|.|...|.|..|+.+|+|+. .
T Consensus 284 ~ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~ 361 (1007)
T KOG4574|consen 284 LPTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSV 361 (1007)
T ss_pred cccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccc
Confidence 345678888876554444443 3577799999999 5554443 3459999999999999999999985 4
Q ss_pred cCeeeEEeecccc
Q psy4441 141 YDKVAVVDPVYET 153 (249)
Q Consensus 141 fdKpLkVe~a~~~ 153 (249)
-|.|.+|.+|+..
T Consensus 362 ~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 362 TGAPSRVSFAKTL 374 (1007)
T ss_pred cCCceeEEecccc
Confidence 5778888888664
No 137
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=83.61 E-value=1.2 Score=40.27 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 118 AYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 118 AFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
|||||++.++|+.|++.+... ....++|+.|.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCc
Confidence 899999999999999865544 2355677777664
No 138
>KOG4660|consensus
Probab=82.17 E-value=1.7 Score=44.33 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=43.6
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCe--ecCeeeEEeecc
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRII--LYDKVAVVDPVY 151 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~--ffdKpLkVe~a~ 151 (249)
|+.|.|++.|-+-..|-..+..--+.|-=+...+--.++ -|+|||.|-+++++..+.+|.+|+. -|.....+++++
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itY 469 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITY 469 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeeh
Confidence 444444444443333333322223333112233333333 9999999999999999999998863 233444444544
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
..
T Consensus 470 Ar 471 (549)
T KOG4660|consen 470 AR 471 (549)
T ss_pred hh
Confidence 43
No 139
>KOG4285|consensus
Probab=81.85 E-value=2.8 Score=40.55 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 95 LYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 95 Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
|-.+|.++|+|.-.|.- .+.-.-+|-|.+.-+|++|| ..|+.+|.+-
T Consensus 213 vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred HHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhh-hhcCeeeccc
Confidence 33479999999434433 44566899999999999999 5666655543
No 140
>KOG4849|consensus
Probab=81.05 E-value=2.1 Score=42.40 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=56.8
Q ss_pred eEEEcCCCCCCChHHHHHHHHHH-hcccCceEEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 76 VLCVSALHPKASDELIKDTLYRE-YKKFGDLSIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~e-FsKFG~VsVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+||.||-.-.+++||-++|..+ ..+|-+|..--.+++. +|+|+|+..+-.+.+.-|..|....|.|+.-.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 48899999999999999988762 3344444222224444 99999999999988999999999889988766653
No 141
>KOG2135|consensus
Probab=80.81 E-value=0.99 Score=45.59 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 95 LYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 95 Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
|...|-+||+| .|.|... ---|.|||.+.-+|-+|. +.-+-+|.++.|+|-+...+
T Consensus 390 ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 390 LNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 55579999999 5666543 345999999999998887 56666799999999876553
No 142
>KOG1365|consensus
Probab=80.73 E-value=5 Score=40.16 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhc-----ccCceE-EEEec-cCC-cceEEEEeCCHHHHHHHHHH
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYK-----KFGDLS-IRLSH-DLD-ERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFs-----KFG~Vs-VvV~r-~~~-rGqAFVtFr~~EdA~~Al~a 134 (249)
.-.|..+.|+-..++.++.+- |. +-|... .-|.+ ++. .|-|||.|...|+|+.||..
T Consensus 161 qvivRmRGLPfdat~~dVv~F----F~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEF----FGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHh----cCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 345788999999999998862 43 345553 33445 344 99999999999999999954
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=77.12 E-value=15 Score=29.90 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhccc-Cce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKF-GDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKF-G~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
...+++-..+.-.+.++|... ...+ ..| .++|.++.. +=.+.|.|++.++|.+=....||..|...
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f----~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFF----GAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeCcccccHHHHHHh----hhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 445666666666677776532 3444 455 588887765 77899999999999999999999987654
No 144
>KOG1295|consensus
Probab=75.21 E-value=2.4 Score=41.58 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=47.9
Q ss_pred eEEEcCCCCCCChHHHHHHHH--------HHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 76 VLCVSALHPKASDELIKDTLY--------REYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly--------~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
-+-|++|+.+++.+++-+.|. +.|.+ ++++..- ..-+.|||.|++.++..+=....+|.+|.+..-
T Consensus 9 Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~-a~~s~~~---~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 9 KVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAK-ADESLRN---HKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred eeeeecCCCcccHHHHhhhcCCCccccchheecc-ccccchh---hhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 467899999999999887753 33333 3332111 127789999999999888888899988877654
No 145
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.04 E-value=2.6 Score=33.59 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCCC-CChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccc
Q psy4441 82 LHPK-ASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 82 LneK-iS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~ 152 (249)
|+.+ ++.+.|++.|..+++..|.+.|+-.. .++..+.|.+.+|++.++. .+-..|.+..+.++.+..
T Consensus 24 l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~---~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 24 LSPKPISLSALEQELAKIWKLKGGVKIRDLG---DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC---CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcc
Confidence 5655 78999999999999999998766554 7899999999999999885 444457788888887764
No 146
>KOG4210|consensus
Probab=72.18 E-value=2 Score=39.95 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=59.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEE---eccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRL---SHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV---~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...+++|.|+.+.+.++++.. +|.+.|.+ ...+ ..... +|.++|.|+.++.+..|+...+...+++..+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~----~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDN----FSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccc----cchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 456788999998888775554 47788866 3222 23333 999999999999999999887777788888887
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
.+.+...
T Consensus 163 dl~~~~~ 169 (285)
T KOG4210|consen 163 DLNTRRG 169 (285)
T ss_pred ccccccc
Confidence 7776655
No 147
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.42 E-value=1 Score=35.74 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF 102 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF 102 (249)
...+||.|+||++.+.+++|++.|.-.|+|=
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~LeIhFqK~ 80 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLEIHFQKP 80 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEEEEEecC
Confidence 3678999999999999999999887777663
No 148
>KOG2591|consensus
Probab=70.14 E-value=6.2 Score=41.00 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=47.4
Q ss_pred CCCCCCC-eEEEcCCCCCCChHHHHHHHHHHhcc--cCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCC--eecC
Q psy4441 69 DRPPSYK-VLCVSALHPKASDELIKDTLYREYKK--FGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRI--ILYD 142 (249)
Q Consensus 69 eg~~e~r-TLyVsNLneKiS~edLKe~Ly~eFsK--FG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~--~ffd 142 (249)
-+|+..+ .+-++.|++..-+|++|-+ |+- .=++ +...+.+.. =||||++-+||+.|...|... .|-|
T Consensus 169 Vrp~~kRcIvilREIpettp~e~Vk~l----f~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 169 VRPNHKRCIVILREIPETTPIEVVKAL----FKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred cccCcceeEEEEeecCCCChHHHHHHH----hccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 3444444 4557889999999999864 764 2233 444444333 489999999999999776543 3667
Q ss_pred eeeE
Q psy4441 143 KVAV 146 (249)
Q Consensus 143 KpLk 146 (249)
|+|.
T Consensus 242 KpIm 245 (684)
T KOG2591|consen 242 KPIM 245 (684)
T ss_pred cchh
Confidence 7664
No 149
>PHA02762 hypothetical protein; Provisional
Probab=69.85 E-value=4.7 Score=30.22 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=19.3
Q ss_pred cccCceEEEEeccCC---cceEEEEeC
Q psy4441 100 KKFGDLSIRLSHDLD---ERVAYVCFR 123 (249)
Q Consensus 100 sKFG~VsVvV~r~~~---rGqAFVtFr 123 (249)
.+||++.|.+.++.. +|.||||--
T Consensus 7 n~fgnlii~~~rs~~ks~eg~afvtig 33 (62)
T PHA02762 7 NDFGNLIIEFKRNVEKSFEGEAFVTIG 33 (62)
T ss_pred CCCccEEEEEecCccccccccEEEEEe
Confidence 479999888877665 999999964
No 150
>KOG2135|consensus
Probab=68.78 E-value=7.9 Score=39.38 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=49.5
Q ss_pred ccccccCCCCCCCCCCCCCCccchhccCCCCccCCCCCCCCeEEEcCCCCC-CChHHHHHHHHHHhcccCceEEEEeccC
Q psy4441 35 ERGHRSRARSPPSPRPRYAYEYRDEYGRTREAVSDRPPSYKVLCVSALHPK-ASDELIKDTLYREYKKFGDLSIRLSHDL 113 (249)
Q Consensus 35 er~r~~~~~~~ps~~akYsdp~R~~~~~~~~~~Reg~~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKFG~VsVvV~r~~ 113 (249)
-|+|+..+|.+|-+ .|.++ |....++++++|++... ++.++| .+...+.. .|++||-+ ++.--+.
T Consensus 166 rr~rs~~rR~np~~--Sst~~-~~~~rrsrsr~r~~~st------rtgp~ks~~s~~r~k----~fee~g~~-~r~el~p 231 (526)
T KOG2135|consen 166 RRHRSGNRRFNPYK--SSTQP-RHGHRRSRSRGRDPTST------RTGPEKSRNSENRRK----FFEEFGVL-ERGELCP 231 (526)
T ss_pred hhccccccccCCCC--CCCCC-cccccccccccCCCccc------ccCcccccccHHhhh----hhHhhcee-eeccccc
Confidence 34455555554332 33333 33332555555555533 555555 23333333 49999987 2222222
Q ss_pred C-cceEEEEeCCHHHHHHHHHHCCCCe
Q psy4441 114 D-ERVAYVCFRSAEDARDAKHSKPRII 139 (249)
Q Consensus 114 ~-rGqAFVtFr~~EdA~~Al~alng~~ 139 (249)
- .|+--|+|+ +.|.++|..+....
T Consensus 232 ~~hg~~~vv~~--enan~~m~s~da~e 256 (526)
T KOG2135|consen 232 THHGCVPVVSK--ENANKTMKSEDAAE 256 (526)
T ss_pred cccccceeEee--ccccccccCCcchh
Confidence 2 889999998 88998887775443
No 151
>KOG4019|consensus
Probab=65.76 E-value=11 Score=34.06 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=63.0
Q ss_pred CeEEEcCCCCCCChHHHHHHHHH-HhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCe-eeEEeecc
Q psy4441 75 KVLCVSALHPKASDELIKDTLYR-EYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDK-VAVVDPVY 151 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~-eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdK-pLkVe~a~ 151 (249)
.++-++++.+.+-.+.+...++. +|-+|-+. ...+.+ .-|.--|.|.+++.|.+|...+..+.|-++ .++.=++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 45778888888777766666665 77766554 222221 145567899999999999999999999998 56555554
Q ss_pred cccCCCcCCCCCCCCCCCCCccccc
Q psy4441 152 ETHASRSRPRSRSYSPPPPEYDRYY 176 (249)
Q Consensus 152 ~~~~~~~~~r~rs~~~~~p~~~r~~ 176 (249)
.-..... . -+.. ||+.+.-|
T Consensus 89 ~~~~~~~-~--q~L~--pP~~eKqF 108 (193)
T KOG4019|consen 89 PGHPESN-S--QYLQ--PPEPEKQF 108 (193)
T ss_pred CCCcccc-c--cccC--CCChhhce
Confidence 3322111 1 2344 78888766
No 152
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=63.64 E-value=25 Score=30.41 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHC
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~al 135 (249)
|...-||-..+.+++..+||+.+..+|.- +| .|....... .-=|||+|..-++|.+-...+
T Consensus 80 E~~N~yvF~Vd~kAnK~qIK~AVEklf~V--kV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 80 EDNNTLVFIVDQRANKTQIKKAVEKLYDV--KVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred hhCCEEEEEEcCCCCHHHHHHHHHHHhCC--eeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 34457788899999999999999999854 44 455443333 567999998888776655433
No 153
>KOG2295|consensus
Probab=63.46 E-value=1.7 Score=44.75 Aligned_cols=70 Identities=24% Similarity=0.204 Sum_probs=51.8
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhccc-CceEEEEeccC----CcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKF-GDLSIRLSHDL----DERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKF-G~VsVvV~r~~----~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+|.|+|+.+.++..+|+.. .+++ |-+.+-+.-.+ ..+..||+|+---+-+.|+.+||++-|....+.-.
T Consensus 232 ~sll~rni~Pnis~aeIe~~----ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~ 306 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENL----CKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSES 306 (648)
T ss_pred HHHHHhccCCcccHHHHHHH----hccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccccc
Confidence 46889999999999998875 6766 33322222111 17889999999999999999999997777665433
No 154
>PF14893 PNMA: PNMA
Probab=60.41 E-value=7.9 Score=37.15 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceE
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLS 106 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs 106 (249)
-|.+..+.|-|..|++..++++|+++|...++-.|...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yr 50 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYR 50 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccce
Confidence 35578899999999999999999999999998888873
No 155
>KOG4410|consensus
Probab=59.82 E-value=36 Score=33.22 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=39.6
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHH
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAE 126 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~E 126 (249)
.+++....-|||.||+..+...|||.. ..+-|-+-..|.-.+-.|-||+.|-|..
T Consensus 324 g~~a~~~~di~~~nl~rd~rv~dlk~~----lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 324 GVEAGAKTDIKLTNLSRDIRVKDLKSE----LRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccCccccceeeccCccccchHHHHHH----HHhcCCCceeEeeecCCcceeEecCCcc
Confidence 455655667999999999999999986 4556666333333334788999997753
No 156
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=53.88 E-value=34 Score=24.74 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=45.4
Q ss_pred cCCCCCCChHHHHHHHHHHhccc-CceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 80 SALHPKASDELIKDTLYREYKKF-GDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 80 sNLneKiS~edLKe~Ly~eFsKF-G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
-.++..++.++|.+.|...|..- +.+ .+....+.| -+|++.+-+|-++|+...+.. .++.|+|.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~--~l~Y~D~dg-D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDF--QLKYKDEDG-DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSE--EEEEEETTS-SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccE--EEEeeCCCC-CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 55666778999999988888877 344 444334466 899999999999999876543 33344443
No 157
>KOG2318|consensus
Probab=52.29 E-value=45 Score=34.97 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCC-CChHHHHHHHHHHhccc----Cce-EEEEecc--CC----------c------------------
Q psy4441 72 PSYKVLCVSALHPK-ASDELIKDTLYREYKKF----GDL-SIRLSHD--LD----------E------------------ 115 (249)
Q Consensus 72 ~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKF----G~V-sVvV~r~--~~----------r------------------ 115 (249)
.+.+.|-|.|++.. ++..+ |+-+|+.| |.| +|.|.-+ ++ .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkD----L~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKD----LFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccceeeEeccccccccHHH----HHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 45678999999974 66666 56667777 688 7777421 00 1
Q ss_pred ---------------------ceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 116 ---------------------RVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 116 ---------------------GqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
=+|.|.|.+++.|..-..++.|+.|-..-+.+++-
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 27999999999999999999999988888877764
No 158
>KOG0804|consensus
Probab=51.81 E-value=53 Score=33.48 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc-Cce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF-GDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF-G~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
.++..|+|-.++.-++-.||=.- ...| -.| .|+|.++.. +=.+.|.|++.++|..=...+||..|..-
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F----~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRF----CASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHH----HHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 44889999999999998886643 2244 455 688888655 77899999999999999999999987664
No 159
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=51.28 E-value=89 Score=22.39 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 84 PKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 84 eKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
..++.++|.+.|-..|.--. -.+.+....+.| .+|+..+-+|-++|+.....
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~-d~v~l~sd~Dl~~a~~~~~~ 70 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDG-DLVTISSDEDLEEAIEEARR 70 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCC-CEEEeCCHHHHHHHHHHHhh
Confidence 77889999999888887552 123443333455 99999999999999987654
No 160
>KOG4483|consensus
Probab=47.94 E-value=30 Score=34.99 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce--EEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL--SIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--sVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
-..|-|.|++.-..-+||-. .|..||+= .|.|+- .-.||-||..+--|.+||..
T Consensus 391 pHVlEIydfp~efkteDll~----~f~~yq~kgfdIkWvD---dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLK----AFETYQNKGFDIKWVD---DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHH----HHHHhhcCCceeEEee---cceeEEeecchHHHHHHhhc
Confidence 46788999997666555444 59999554 788875 56799999999999999965
No 161
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=47.90 E-value=1e+02 Score=22.23 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
.+..-.|+..++.++|.+.|...|.--+. .+.+....+.|- +|++.+-+|-+.|+....
T Consensus 11 ~~~~~~~~~~~s~~dL~~~i~~~~~~~~~-~~~l~Y~Dedgd-~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 11 ETRRLSVPRDISFEDLRSKVAKRFGLDNQ-SFTLKYQDEDGD-LVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhCCCCC-CeEEEEECCCCC-EEEecCHHHHHHHHHHHH
Confidence 35555677789999999998888875432 234443333443 999999999999997754
No 162
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=47.14 E-value=72 Score=22.71 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 89 ELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 89 edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
.+|.+.+ ....++|-+-..+......+..|+.+++.++|+++..++.
T Consensus 34 ~~i~~~~-~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 34 PEIDELK-EAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHH-HHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3444433 3458999446777777668889999999999988887653
No 163
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=45.07 E-value=15 Score=30.74 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=34.2
Q ss_pred EcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHH
Q psy4441 79 VSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDA 128 (249)
Q Consensus 79 VsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA 128 (249)
|..|++-++-+.+|+++|.+...||+-. ...-|||+|+...+.
T Consensus 26 l~~LP~la~S~~~KD~I~q~m~~F~dp~-------~G~pAF~s~~QQ~~m 68 (120)
T PRK15321 26 LLALPESASSETLKDSIYQEMNAFKDPN-------SGDSAFVSFEQQTAM 68 (120)
T ss_pred HHhCCcccCcHHHHHHHHHHHHHhCCCC-------CCCcccccHHHHHHH
Confidence 6789999999999999999999998651 133599999765543
No 164
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=43.69 E-value=1.2e+02 Score=26.61 Aligned_cols=56 Identities=13% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCCCCChHHHHHHHHHHhcccCceEEEEe---------ccCC--cceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 82 LHPKASDELIKDTLYREYKKFGDLSIRLS---------HDLD--ERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 82 LneKiS~edLKe~Ly~eFsKFG~VsVvV~---------r~~~--rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
.|+.+..+++++.|+..=.-=| |.+.+. ++.. ...+|+.|++++||-.+++.-..+
T Consensus 33 vnD~va~D~~rk~~lk~aaP~g-vk~~~~~v~k~i~~i~~~~~~~~~v~ll~~~p~d~~~lve~gv~I 99 (159)
T COG3444 33 VNDEVANDDVRKTLLKQAAPPG-VKLRFFSVEKAIDVINKPKYDGQKVFLLFENPQDVLRLVEGGVPI 99 (159)
T ss_pred EccccccCHHHHHHHHhhcCCc-eEEEEEEHHHHHHHhcCCCCCCeEEEEEECCHHHHHHHHhcCCCC
Confidence 4677888999999988877766 633322 2232 778999999999999999775544
No 165
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=41.16 E-value=16 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 95 LYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 95 Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
++..|+.++++ .++- =.||.-|++.++|-+++.++.
T Consensus 29 v~~~~~~~~~f~k~vk------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 29 VQKSFSDPEKFSKIVK------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHcCHHHHhhhhh------hhhccCCCCHHHHHHHHHHhh
Confidence 44446666555 2222 239999999999988887653
No 166
>KOG4676|consensus
Probab=38.42 E-value=8.3 Score=38.65 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
.+||+|.||...+-.+++- ..|.++|+| .-.++-....-.+-|.|....+...|++.++..
T Consensus 151 rRt~~v~sl~~~~~l~e~~----e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~gre 212 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESG----ESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHGRE 212 (479)
T ss_pred Hhhhhhhcchhhhcchhhh----hhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcchh
Confidence 4789999988644444444 459999999 444443333556669999999999999766543
No 167
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.09 E-value=81 Score=25.15 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRS 124 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~ 124 (249)
+-.-.+||.|++.++-+.--+. |...+-+=|.+.....-+++.|++|-|+-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~-v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDY-LAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHH-HHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456799999996554433332 222222226665455555569999988765
No 168
>KOG0156|consensus
Probab=37.82 E-value=52 Score=32.82 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=44.8
Q ss_pred EcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 79 VSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 79 VsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
|-||..-... .+-++|..+=++||.| ++.+.. .-.|+-.+.|.|++|+. .++..|-|++.
T Consensus 37 IGnl~~l~~~-~~h~~~~~ls~~yGpi~tl~lG~-----~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSL-PPHRSFRKLSKKYGPVFTLRLGS-----VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred cccHHHcCCC-chhHHHHHHHHHhCCeEEEEecC-----ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4555543333 5677777788899999 777753 36889999999999994 55777999987
No 169
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=37.29 E-value=71 Score=27.69 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=43.0
Q ss_pred EEEcCCC-CCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 77 LCVSALH-PKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 77 LyVsNLn-eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
.|+-||. ++-+.++|+..|-.++.. .+ .+.+.+....+.+.|+|.-+-+|..-++.|-.
T Consensus 7 a~~G~l~~~~~~ld~i~~~l~~L~~~--~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 7 AYIGGLRMFQYKLDDIKNWLASLYKP--RISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEECChhhhHHHHHHHHHHHHHHHhc--ccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 4566665 446778888888888766 33 35555555599999999999999988877533
No 170
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=35.00 E-value=35 Score=36.82 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.3
Q ss_pred cceEEEEeCCHHHHHHHHHHC-CCCeecCeeeEEeeccc
Q psy4441 115 ERVAYVCFRSAEDARDAKHSK-PRIILYDKVAVVDPVYE 152 (249)
Q Consensus 115 rGqAFVtFr~~EdA~~Al~al-ng~~ffdKpLkVe~a~~ 152 (249)
..+|||||++.-+|+.|.++. ...++....+.|.++.+
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPn 395 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPN 395 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCcc
Confidence 559999999999999999884 45555555466665544
No 171
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=34.62 E-value=80 Score=28.18 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=27.0
Q ss_pred EEEeccCC-cceEEEEeCCHHHHHHHHHHCCC-Ceec--CeeeEEe
Q psy4441 107 IRLSHDLD-ERVAYVCFRSAEDARDAKHSKPR-IILY--DKVAVVD 148 (249)
Q Consensus 107 VvV~r~~~-rGqAFVtFr~~EdA~~Al~alng-~~ff--dKpLkVe 148 (249)
+||-.+.. .|-+.++.++.++|.+|+..+-. ..|. +..|.||
T Consensus 41 ~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 41 VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 45544443 66667778999999999987432 2232 4566666
No 172
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.00 E-value=49 Score=27.07 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHhcccCceEEEEeccCC--cceEEEEeCCH-HHHHHHHH
Q psy4441 87 SDELIKDTLYREYKKFGDLSIRLSHDLD--ERVAYVCFRSA-EDARDAKH 133 (249)
Q Consensus 87 S~edLKe~Ly~eFsKFG~VsVvV~r~~~--rGqAFVtFr~~-EdA~~Al~ 133 (249)
+.+.|++. |+.|..+.|+...... .|+|.|.|..- .-=.+|++
T Consensus 30 ~~~~l~~~----l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDK----LAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHH----HHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHH----HHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 44566654 7779888666665444 99999999764 33455553
No 173
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.98 E-value=82 Score=23.86 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhcccCceEEEE
Q psy4441 88 DELIKDTLYREYKKFGDLSIRL 109 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~VsVvV 109 (249)
.+.|.+.|-..|+..|+|.|.-
T Consensus 4 re~i~~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 4 REEITAEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHHHHHHhcCcEEEEE
Confidence 3566777788899999995443
No 174
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=30.93 E-value=1.7e+02 Score=24.88 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=37.5
Q ss_pred CCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 81 ALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 81 NLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
.||-+++.+.++..|..+-++ |.+.-. +..+..++|..+++++=.+++..
T Consensus 56 ~I~R~L~~e~~~~Il~~Lv~~-g~aew~---~~~~~~~~I~Wrt~~eWa~~I~~ 105 (139)
T PF05871_consen 56 SINRRLSPEFIREILDELVQK-GNAEWI---DKSKTRCLIYWRTPEEWADLIYD 105 (139)
T ss_dssp TTTEE--HHHHHHHHHHHHCT-TSEEEC---STTSCEEEE-SS-HHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhc-CCeEEe---eCCCCEEEEEeCCHHHHHHHHHH
Confidence 499999999999999999888 887322 33477899999999998888865
No 175
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=30.89 E-value=49 Score=22.84 Aligned_cols=58 Identities=24% Similarity=0.147 Sum_probs=32.5
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCceE-EEEeccCC-cceEEEEeCCHHHHHHHHHHCC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDLS-IRLSHDLD-ERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs-VvV~r~~~-rGqAFVtFr~~EdA~~Al~aln 136 (249)
.|.|..+.. .+..++.+-.+=+++.++. +.+..... -++-...|.+.++|++++..|.
T Consensus 6 ~vQv~s~~~---~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 6 YVQVGSFSS---EENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEES----HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEcCC---HHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 455555554 4444544444444433333 33333333 5666668999999999998877
No 176
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=30.78 E-value=79 Score=25.26 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=37.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHH
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~ 133 (249)
....++++.|+........+... |..+|.+ .+.+..... ..+.++.+....++..++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADL----FKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccceeeccccccccchhHHHHh----ccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 56788999999999998887765 9999999 444443322 2233344444444444443
No 177
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.80 E-value=78 Score=23.52 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHhcccCceEE
Q psy4441 86 ASDELIKDTLYREYKKFGDLSI 107 (249)
Q Consensus 86 iS~edLKe~Ly~eFsKFG~VsV 107 (249)
..++.|++.|-.+|++||+|.+
T Consensus 52 ~~~~~~~~~l~~~l~~~~~v~~ 73 (75)
T cd04932 52 TSDQLLTQALLKELSQICDVKV 73 (75)
T ss_pred chhHHHHHHHHHHHHhccEEEe
Confidence 3456787788999999998864
No 178
>KOG2253|consensus
Probab=29.06 E-value=35 Score=35.97 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....|+.|.||..+++.+-++.+ ..+.|-| +-...+ |+|-.|...+-+-.|++.+....+.|+.+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~i----l~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSI----LAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHH----HhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 67789999999999999999986 5667877 322222 9999999999999999999888888888877764
No 179
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.95 E-value=2e+02 Score=19.57 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=36.4
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCH----HHHHHHHHHCC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSA----EDARDAKHSKP 136 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~----EdA~~Al~aln 136 (249)
||.|.|+.-.--...|++. +++.=.| ++.|. ...+.+-|+|... ++..+|+..++
T Consensus 1 t~~v~~m~C~~C~~~v~~~----l~~~~GV~~v~vd--~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKA----LSKLPGVKSVKVD--LETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHH----HHTSTTEEEEEEE--TTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHH----HhcCCCCcEEEEE--CCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 6888888876666666666 5555444 56653 3467888998744 56666666543
No 180
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=27.88 E-value=1.2e+02 Score=20.33 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHhccc--CceEEEEeccCCcceEEEEeCCHHHHHHHH
Q psy4441 86 ASDELIKDTLYREYKKF--GDLSIRLSHDLDERVAYVCFRSAEDARDAK 132 (249)
Q Consensus 86 iS~edLKe~Ly~eFsKF--G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al 132 (249)
++..+++..|-.+..+- |+ .|.|.+.++..+..|.++..+.-++++
T Consensus 2 v~~te~r~~~~~~l~~v~~~~-pv~It~~g~~~avlv~~~~y~~l~~~~ 49 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRDGE-PVTITKRGRPVAVLVSAADYDRLQETL 49 (52)
T ss_pred cCHHHHHHHHHHHHHHHHCCC-CEEEEECCcceEEEeeHHHHHHHHHHh
Confidence 55677777666555444 55 577777666666666666655555444
No 181
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.03 E-value=1.1e+02 Score=24.15 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=30.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCF 122 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtF 122 (249)
+-.-.+||.|++.++-+.-.+..... .+=|.+..+....++.|++|-+.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~--~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEW--IGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhh--CCCccEEEEEccCCCCCEEEEEe
Confidence 34567999999965555444433111 23355544444555699999887
No 182
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=26.59 E-value=2.4e+02 Score=22.40 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=43.2
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
+.+--++..++.++|.+.+-..|+-=..+.|++.-. | -+||..+.+|-+.|+.+
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE---G-D~iti~sq~DLd~Ai~~ 66 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD---G-DMITMGDQDDLDMAIDT 66 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC---C-CCccccCHHHHHHHHHH
Confidence 556678999999999999999997545556666543 3 79999999999999866
No 183
>KOG2187|consensus
Probab=25.07 E-value=59 Score=33.56 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=36.0
Q ss_pred cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeeccccc
Q psy4441 115 ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYETH 154 (249)
Q Consensus 115 rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~~ 154 (249)
...|+++|++.+++..|.+.++|....+..+.++.+....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 8899999999999999999999998888899988876553
No 184
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.07 E-value=44 Score=23.19 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=21.8
Q ss_pred HhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 98 EYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 98 eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
.|+.++++.|.+.........+-++=+.+++++|++++...
T Consensus 21 i~~~L~~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~ 61 (64)
T cd04917 21 IFDALEDINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSR 61 (64)
T ss_pred HHHHHHhCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHH
Confidence 34444456444433222333443334457788888887665
No 185
>PLN02837 threonine-tRNA ligase
Probab=24.86 E-value=2.1e+02 Score=29.31 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHh-----cccCceEEEEeccCCcceEEEEeC----CHHHHHHHHHHCCCCeecC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREY-----KKFGDLSIRLSHDLDERVAYVCFR----SAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eF-----sKFG~VsVvV~r~~~rGqAFVtFr----~~EdA~~Al~alng~~ffd 142 (249)
++-.+|-+-.....-....++.++.+++ .-||.+.+.+......| .|+.|. +.++.++....|+.++--|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g-~y~D~~~~~lt~edl~~IEk~m~~iI~~n 105 (614)
T PLN02837 27 AEPERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENG-FYYDFDMEPLTDKDLKRIKKEMDRIISRN 105 (614)
T ss_pred CCCceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCC-EEEEecCCCCCHHHHHHHHHHHHHHHHcC
Confidence 4555555555555555566777777755 66888877777666666 777776 3467777777788888788
Q ss_pred eeeEEeec
Q psy4441 143 KVAVVDPV 150 (249)
Q Consensus 143 KpLkVe~a 150 (249)
.+|++...
T Consensus 106 ~pI~~~~v 113 (614)
T PLN02837 106 LPLVREEV 113 (614)
T ss_pred CCEEEEEe
Confidence 78877654
No 186
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=24.70 E-value=81 Score=22.11 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 89 ELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 89 edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
=.+++.++.-...+|.|.+........ .+-|.|.+.++|++....
T Consensus 35 v~~~q~~~~r~~g~~~i~i~~~~~~~~-~~~i~~~~~~~a~~i~~~ 79 (80)
T PF03703_consen 35 VSIKQNPLQRLFGLGTIKIDTAGGSGE-KIEIPFLSIEDAEEIYDW 79 (80)
T ss_pred EEEEcCHHHHhCccEEEEEEECCCCCc-eeEEecCCHHHHHHHHhh
Confidence 345555555555556665444433222 288999999999987653
No 187
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=24.60 E-value=53 Score=24.01 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=15.9
Q ss_pred ccCCCCCCCcCCCCCCCCCCcc
Q psy4441 15 KRTRSSLGRYDDSSDERLSPER 36 (249)
Q Consensus 15 ~r~~s~~~~yd~ss~er~~~er 36 (249)
++++||+ |.|||..++.|++
T Consensus 31 s~~kssf--~sd~skg~l~p~~ 50 (50)
T PRK14094 31 DGEKSSF--YSDSSKGKLGPKR 50 (50)
T ss_pred ccCccce--eccccCCCCCCCC
Confidence 4566777 9999999998874
No 188
>KOG3980|consensus
Probab=24.55 E-value=1.1e+02 Score=30.29 Aligned_cols=73 Identities=25% Similarity=0.192 Sum_probs=50.1
Q ss_pred EcCCCCCCChHHHHHHHHHHhcccCce-E-EEEeccC----------------------------C----cceEEEEeCC
Q psy4441 79 VSALHPKASDELIKDTLYREYKKFGDL-S-IRLSHDL----------------------------D----ERVAYVCFRS 124 (249)
Q Consensus 79 VsNLneKiS~edLKe~Ly~eFsKFG~V-s-VvV~r~~----------------------------~----rGqAFVtFr~ 124 (249)
|+|-+.+++.|-||.++.-+.+|||=. . ++|.+-+ . +|+||++=-+
T Consensus 119 vTN~~~~p~VD~ik~~~lpvlkkFgv~~~elki~kRG~~P~GgGeV~f~~~~~k~l~pI~l~~~g~I~kIrG~ays~rVs 198 (361)
T KOG3980|consen 119 VTNSDGDPSVDYIKAVLLPVLKKFGVNDEELKIQKRGFAPEGGGEVVFTVPVVKKLNPIKLTEPGKIKKIRGVAYSTRVS 198 (361)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHhCcCcceEEEEecccCCCCCcEEEEEcCcccccCceeeccCccEEEEEeEEEEcccC
Confidence 789999999999999999999999865 2 3333211 0 6778877666
Q ss_pred HHHH----HHHHHHCCCCeecCeeeEEeeccc
Q psy4441 125 AEDA----RDAKHSKPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 125 ~EdA----~~Al~alng~~ffdKpLkVe~a~~ 152 (249)
+.=| +.|+..|+++ +-|.-|.++..+.
T Consensus 199 P~~A~rm~d~Ak~~l~~~-i~dv~i~~d~~~g 229 (361)
T KOG3980|consen 199 PSLANRMVDAAKRVLHKF-IPDVYIYTDVRKG 229 (361)
T ss_pred hHHHHHHHHHHHHHHhhh-CCceEEEEeeecc
Confidence 5444 3455556666 5677777774433
No 189
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=24.37 E-value=1.7e+02 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 88 DELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
...+-+.+...++|||.| .+.+ -++-+|+..++|.+++.+..-+.
T Consensus 19 ~~~~~~~~~~~~~kyG~i~~~~~-----~~~~~vvv~~pe~~~~il~~~~~ 64 (463)
T PF00067_consen 19 KGNPHEFFRELHKKYGPIFRIWP-----GGQPIVVVSDPELIKEILRSRSK 64 (463)
T ss_dssp THHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEEESHHHHHHHHTTTTT
T ss_pred CCcHHHHHHHHHHHhCCEEEEeE-----ecccccccccchhhccccccccc
Confidence 355666678889999999 5555 35788999999999999966543
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=24.28 E-value=83 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=22.8
Q ss_pred EEEEeCCHHHHHHHHHHCCC-CeecCeeeEEee
Q psy4441 118 AYVCFRSAEDARDAKHSKPR-IILYDKVAVVDP 149 (249)
Q Consensus 118 AFVtFr~~EdA~~Al~alng-~~ffdKpLkVe~ 149 (249)
|+|||.+.+-|++-+....- +.+.++.+.|+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 89999999998887755432 456666665553
No 191
>CHL00030 rpl23 ribosomal protein L23
Probab=24.20 E-value=2.5e+02 Score=22.40 Aligned_cols=49 Identities=4% Similarity=-0.037 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--------------cceEEEEeCCHH
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--------------ERVAYVCFRSAE 126 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--------------rGqAFVtFr~~E 126 (249)
.-|+-..+.+++..+||+++..+|.- +| .|....... .-=|+|+++.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~V--kV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~ 83 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGV--KVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGY 83 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--eEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcC
Confidence 56777888999999999999999863 45 454432211 134888887654
No 192
>COG5583 Uncharacterized small protein [Function unknown]
Probab=24.07 E-value=84 Score=23.35 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhcccCceEEEEe
Q psy4441 88 DELIKDTLYREYKKFGDLSIRLS 110 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG~VsVvV~ 110 (249)
.+.|+.+|..+ +||.|.|+|.
T Consensus 11 ~ekI~~~Le~l--kyGsV~ItVh 31 (54)
T COG5583 11 IEKIKKALEGL--KYGSVTITVH 31 (54)
T ss_pred HHHHHHHHhhc--ccceEEEEEE
Confidence 45666666554 8999988886
No 193
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.33 E-value=2.5e+02 Score=19.22 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHhccc-Cce-EEEEeccCCcceEEEEeC----CHHHHHHHHHHCC
Q psy4441 97 REYKKF-GDL-SIRLSHDLDERVAYVCFR----SAEDARDAKHSKP 136 (249)
Q Consensus 97 ~eFsKF-G~V-sVvV~r~~~rGqAFVtFr----~~EdA~~Al~aln 136 (249)
..|.++ .+| ++......+.+.+.|+|+ +.+++.+++.+.+
T Consensus 20 ~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G 65 (72)
T cd04883 20 AIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAG 65 (72)
T ss_pred HHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCC
Confidence 457777 455 454444433455555554 6667777776654
No 194
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.35 E-value=1.3e+02 Score=24.39 Aligned_cols=52 Identities=6% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCH
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSA 125 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~ 125 (249)
+-.-.+||.|++.++-+.--+.. ....+ =|.+..+..-+++.|++|-|+-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v-~~~~~-~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQV-TQLAE-EGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHH-HHhCC-CCcEEEEEcCCCCCCcEEEecCCC
Confidence 34567999999965555444332 22222 277755555555699999988654
No 195
>KOG4454|consensus
Probab=22.28 E-value=24 Score=33.20 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEcC----CCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 69 DRPPSYKVLCVSA----LHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 69 eg~~e~rTLyVsN----LneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~f 140 (249)
++-.+..|+.+.| |.+.++.+. ||..|+.-|.| .+++..+++ +-+.||+....-+.-.|+..-++..+
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei----~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEI----LYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhh----heeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3345677788888 666665554 55679999999 588876654 77899999988888888888777776
Q ss_pred cCeeeEEe
Q psy4441 141 YDKVAVVD 148 (249)
Q Consensus 141 fdKpLkVe 148 (249)
+-+++.|-
T Consensus 151 ~~~~~~~g 158 (267)
T KOG4454|consen 151 FQKKVTIG 158 (267)
T ss_pred CCCCcccc
Confidence 66666654
No 196
>KOG4213|consensus
Probab=22.27 E-value=1.9e+02 Score=26.60 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHhcccCce-EEEEecc--C--C-cceEEEEeCCHHHHHHHH
Q psy4441 85 KASDELIKDTLYREYKKFGDL-SIRLSHD--L--D-ERVAYVCFRSAEDARDAK 132 (249)
Q Consensus 85 KiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~--~-rGqAFVtFr~~EdA~~Al 132 (249)
|++++.|.+.+. |.. |++ -|..-+. . . .|--||+|++.++|..-+
T Consensus 117 K~td~ql~~l~q--w~~-~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~ 167 (205)
T KOG4213|consen 117 KITDDQLDDLNQ--WAS-GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFAND 167 (205)
T ss_pred cCCHHHHHHHHH--Hhc-ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhh
Confidence 378888887643 333 888 3444322 2 2 899999999999998744
No 197
>KOG4761|consensus
Probab=21.81 E-value=1.2e+02 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q psy4441 186 PGLPPPLPHPGERPYGYGPPVL 207 (249)
Q Consensus 186 ~~~~~~~~~~~~~~~~ygp~~~ 207 (249)
|+.+||-+| +++ |||+..
T Consensus 229 PG~vPpgar-FdP---~gP~g~ 246 (266)
T KOG4761|consen 229 PGAVPPGAR-FDP---FGPIGT 246 (266)
T ss_pred CCCCCCCCc-CCC---CCCCCC
Confidence 444555666 555 777754
No 198
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=21.67 E-value=1.9e+02 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=32.4
Q ss_pred hcccCceEEEEecc--CCcceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 99 YKKFGDLSIRLSHD--LDERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 99 FsKFG~VsVvV~r~--~~rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
.++ |++.|.+..- ..++.-+..|.+.++-.+|+.+.-.++++-.+
T Consensus 95 ~~~-~~l~i~~T~~~~~~~~~~v~~f~~~~~l~~al~AS~~iP~~~~p 141 (233)
T cd07224 95 CNR-GRIRVAVTQLFPVPRGLLVSSFDSKSDLIDALLASCNIPGYLAP 141 (233)
T ss_pred hcC-CCEEEEEEecccCCCceEEEecCCcchHHHHHHHhccCCcccCC
Confidence 344 7776666542 23577777899999999999998888776653
No 199
>KOG1924|consensus
Probab=21.26 E-value=2e+02 Score=31.78 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCcccC
Q psy4441 229 PRGPPLHHIPPHHPTYLKQE 248 (249)
Q Consensus 229 p~~p~~~~~~p~h~~~~~~~ 248 (249)
|-||-|-.++|.=|+||++.
T Consensus 598 PP~~gm~pmaPvlP~gLkpK 617 (1102)
T KOG1924|consen 598 PPPPGMFPMAPVLPFGLKPK 617 (1102)
T ss_pred CCCCCcccccccCCCCCCcc
Confidence 44455566788889999863
No 200
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.87 E-value=1e+02 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.9
Q ss_pred eEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 117 VAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 117 qAFVtFr~~EdA~~Al~alng~~f 140 (249)
..+|+|.+..+|-.|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 579999999999999988766533
No 201
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.58 E-value=3.2e+02 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhc
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYK 100 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFs 100 (249)
..-|+-..+.+++..+||+.|..+|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~ 45 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG 45 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC
Confidence 34677778889999999999999984
No 202
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=20.41 E-value=49 Score=24.45 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHhcccCce
Q psy4441 86 ASDELIKDTLYREYKKFGDL 105 (249)
Q Consensus 86 iS~edLKe~Ly~eFsKFG~V 105 (249)
.|...+|..+..+|.|||.+
T Consensus 9 ~s~~r~k~~~e~I~~KY~~~ 28 (58)
T PF10384_consen 9 QSDQRFKSRWESIIEKYGQP 28 (58)
T ss_dssp HHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 35678899999999999996
No 203
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=20.11 E-value=2.2e+02 Score=20.52 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.6
Q ss_pred cceEEEEeCCHHHHHHHHHHC
Q psy4441 115 ERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 115 rGqAFVtFr~~EdA~~Al~al 135 (249)
.+.-..+|.+.++|.++...+
T Consensus 42 Gq~~~~~~~s~~~A~~~~~k~ 62 (74)
T cd07996 42 GQSRTKTFDSEEEALKAAEKL 62 (74)
T ss_pred CceEEEECCCHHHHHHHHHHH
Confidence 456678899999999988653
Done!