Query psy4441
Match_columns 249
No_of_seqs 125 out of 223
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 17:08:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2diu_A KIAA0430 protein; struc 99.8 2.9E-20 9.8E-25 146.2 8.2 77 72-154 6-85 (96)
2 2a3j_A U1 small nuclear ribonu 99.8 8E-20 2.7E-24 145.6 10.0 83 72-154 27-111 (127)
3 2dgx_A KIAA0430 protein; RRM d 99.8 4.9E-19 1.7E-23 131.1 10.3 82 72-153 7-90 (96)
4 1x4c_A Splicing factor, argini 99.8 3.6E-18 1.2E-22 128.9 13.6 84 72-162 13-102 (108)
5 1nu4_A U1A RNA binding domain; 99.8 7.3E-19 2.5E-23 128.4 8.5 82 72-153 6-89 (97)
6 4fxv_A ELAV-like protein 1; RN 99.8 4.3E-18 1.5E-22 128.5 10.3 77 72-152 17-98 (99)
7 3s8s_A Histone-lysine N-methyl 99.7 7.1E-18 2.4E-22 129.9 10.6 80 70-153 2-86 (110)
8 4f25_A Polyadenylate-binding p 99.7 8.4E-18 2.9E-22 128.7 10.0 80 70-153 1-83 (115)
9 2dnz_A Probable RNA-binding pr 99.7 2.2E-17 7.6E-22 120.1 11.4 80 71-154 2-86 (95)
10 2do0_A HnRNP M, heterogeneous 99.7 7.5E-17 2.6E-21 121.1 13.9 79 72-154 13-95 (114)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2E-17 7E-22 117.8 10.1 76 72-151 5-85 (85)
12 2cq3_A RNA-binding protein 9; 99.7 7.2E-17 2.5E-21 119.6 13.2 80 71-154 12-94 (103)
13 2e5h_A Zinc finger CCHC-type a 99.7 4.1E-17 1.4E-21 118.5 11.5 77 71-151 13-94 (94)
14 2cqc_A Arginine/serine-rich sp 99.7 2.7E-17 9.2E-22 119.4 10.3 81 68-152 9-94 (95)
15 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.2E-17 7.4E-22 118.1 9.6 77 72-152 4-85 (87)
16 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-16 4.3E-21 120.4 14.3 80 71-154 12-96 (115)
17 2d9p_A Polyadenylate-binding p 99.7 4.6E-17 1.6E-21 120.7 11.5 82 69-154 10-94 (103)
18 1x5t_A Splicing factor 3B subu 99.7 3.8E-17 1.3E-21 119.1 10.6 80 71-154 2-87 (96)
19 2cpf_A RNA binding motif prote 99.7 5.6E-17 1.9E-21 118.9 11.3 80 71-154 2-89 (98)
20 2dnm_A SRP46 splicing factor; 99.7 3.8E-17 1.3E-21 121.1 10.4 79 72-154 11-94 (103)
21 1whw_A Hypothetical protein ri 99.7 7.9E-17 2.7E-21 118.3 11.7 80 71-154 5-89 (99)
22 1x4a_A Splicing factor, argini 99.7 5.7E-17 2E-21 121.6 11.1 79 72-154 20-100 (109)
23 2fy1_A RNA-binding motif prote 99.7 7.5E-17 2.6E-21 124.2 11.9 79 72-154 5-87 (116)
24 2cq0_A Eukaryotic translation 99.7 9.4E-17 3.2E-21 119.0 11.5 80 71-154 12-96 (103)
25 3ulh_A THO complex subunit 4; 99.7 5.5E-17 1.9E-21 120.6 10.0 77 71-151 26-106 (107)
26 1x5s_A Cold-inducible RNA-bind 99.7 6.7E-17 2.3E-21 119.3 10.3 79 72-154 10-93 (102)
27 3pgw_A U1-A; protein-RNA compl 99.7 4.5E-17 1.5E-21 138.1 10.6 82 72-153 7-90 (282)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.7E-17 1.9E-21 119.7 9.7 79 72-154 10-93 (102)
29 2ywk_A Putative RNA-binding pr 99.7 5.7E-17 2E-21 118.0 9.4 77 72-152 14-94 (95)
30 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 118.6 11.5 76 71-154 8-84 (103)
31 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.9E-17 2.7E-21 119.4 9.8 79 72-154 13-94 (103)
32 2dgv_A HnRNP M, heterogeneous 99.7 8.5E-17 2.9E-21 116.4 9.7 79 72-154 6-87 (92)
33 3md1_A Nuclear and cytoplasmic 99.7 1.1E-16 3.6E-21 113.6 10.0 75 75-153 2-81 (83)
34 4a8x_A RNA-binding protein wit 99.7 7.2E-17 2.5E-21 115.3 9.1 77 73-153 3-85 (88)
35 2cq1_A PTB-like protein L; RRM 99.7 1.9E-16 6.5E-21 121.5 12.0 81 68-154 9-92 (101)
36 1x5u_A Splicing factor 3B subu 99.7 2.4E-16 8.1E-21 116.9 12.1 80 71-154 12-96 (105)
37 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-16 8.1E-21 116.9 11.9 78 72-153 13-97 (105)
38 2x1f_A MRNA 3'-END-processing 99.7 1.1E-16 3.8E-21 117.5 9.9 77 74-154 2-83 (96)
39 2cph_A RNA binding motif prote 99.7 2.4E-16 8.2E-21 116.9 11.6 79 72-154 13-98 (107)
40 2dnq_A RNA-binding protein 4B; 99.7 2E-16 7E-21 114.9 10.9 76 71-154 5-81 (90)
41 2do4_A Squamous cell carcinoma 99.7 2.6E-16 9E-21 116.0 11.6 78 72-153 15-96 (100)
42 3r27_A HnRNP L, heterogeneous 99.7 8.5E-17 2.9E-21 125.4 9.4 79 68-152 15-96 (100)
43 3beg_B Splicing factor, argini 99.7 8.2E-17 2.8E-21 123.5 9.2 75 72-153 14-94 (115)
44 2fc9_A NCL protein; structure 99.7 2.4E-16 8.1E-21 116.4 11.3 80 71-154 12-92 (101)
45 2cpi_A CCR4-NOT transcription 99.7 4.4E-17 1.5E-21 123.7 7.3 81 72-153 13-101 (111)
46 1x4h_A RNA-binding protein 28; 99.7 2.9E-16 9.8E-21 117.1 11.6 79 71-153 12-101 (111)
47 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-16 4.9E-21 120.1 10.1 79 71-153 5-85 (115)
48 1u6f_A Tcubp1, RNA-binding pro 99.7 2.8E-16 9.7E-21 122.0 11.9 80 71-154 39-123 (139)
49 2dgs_A DAZ-associated protein 99.7 3.3E-16 1.1E-20 115.3 11.6 77 72-153 8-89 (99)
50 2la6_A RNA-binding protein FUS 99.7 1.8E-16 6E-21 117.1 10.1 77 71-151 10-99 (99)
51 3ex7_B RNA-binding protein 8A; 99.7 8.8E-17 3E-21 123.0 8.7 79 72-154 20-103 (126)
52 2cqd_A RNA-binding region cont 99.7 6.5E-16 2.2E-20 117.0 13.3 78 72-154 15-97 (116)
53 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.5E-21 118.4 9.3 78 72-153 21-103 (106)
54 1why_A Hypothetical protein ri 99.7 2.7E-16 9.1E-21 115.7 10.8 76 72-153 15-93 (97)
55 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.5E-16 8.5E-21 125.1 11.4 79 72-154 37-120 (156)
56 2err_A Ataxin-2-binding protei 99.7 1.6E-16 5.5E-21 120.6 9.9 78 72-153 27-107 (109)
57 2lxi_A RNA-binding protein 10; 99.7 5E-17 1.7E-21 120.4 6.9 76 74-153 1-83 (91)
58 1sjq_A Polypyrimidine tract-bi 99.7 7.3E-17 2.5E-21 126.6 8.1 77 72-154 14-93 (105)
59 2ytc_A PRE-mRNA-splicing facto 99.7 1.9E-16 6.6E-21 113.0 9.6 74 72-151 10-85 (85)
60 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-16 8.4E-21 117.0 10.5 80 71-154 10-97 (106)
61 2cpz_A CUG triplet repeat RNA- 99.7 2.7E-16 9.2E-21 118.9 10.8 78 72-153 23-105 (115)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 9E-21 121.0 10.8 75 72-150 61-140 (140)
63 2lkz_A RNA-binding protein 5; 99.7 7.8E-17 2.7E-21 122.2 7.5 77 72-152 7-94 (95)
64 2khc_A Testis-specific RNP-typ 99.7 1.3E-16 4.5E-21 120.8 8.7 76 72-151 38-118 (118)
65 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.8E-21 117.7 8.5 75 75-154 1-76 (101)
66 3ucg_A Polyadenylate-binding p 99.7 2.6E-16 8.9E-21 112.9 9.7 76 73-153 5-85 (89)
67 2cqh_A IGF-II mRNA-binding pro 99.7 2.5E-16 8.7E-21 114.7 9.5 76 71-153 5-83 (93)
68 2e5j_A Methenyltetrahydrofolat 99.7 2.5E-16 8.6E-21 116.1 9.4 78 72-153 17-94 (97)
69 3p5t_L Cleavage and polyadenyl 99.7 7.4E-17 2.5E-21 117.8 6.3 75 75-153 2-83 (90)
70 2cpe_A RNA-binding protein EWS 99.7 6.7E-16 2.3E-20 116.1 11.7 79 72-154 13-104 (113)
71 1p1t_A Cleavage stimulation fa 99.7 3.1E-16 1E-20 115.8 9.3 78 73-154 7-89 (104)
72 2jrs_A RNA-binding protein 39; 99.7 3.3E-16 1.1E-20 119.2 9.7 79 71-153 23-106 (108)
73 2kxn_B Transformer-2 protein h 99.7 2.8E-16 9.6E-21 123.8 9.6 81 69-153 41-126 (129)
74 2cpj_A Non-POU domain-containi 99.7 5.7E-16 2E-20 114.3 10.7 77 72-154 13-90 (99)
75 2ad9_A Polypyrimidine tract-bi 99.7 3.1E-16 1.1E-20 125.0 9.9 81 68-154 25-108 (119)
76 2cpd_A Apobec-1 stimulating pr 99.7 7.6E-16 2.6E-20 113.6 11.3 75 72-154 13-90 (99)
77 1wex_A Hypothetical protein (r 99.7 2.5E-16 8.7E-21 121.1 9.0 78 70-153 11-91 (104)
78 1wi8_A EIF-4B, eukaryotic tran 99.7 8.2E-16 2.8E-20 114.4 11.5 77 72-154 13-95 (104)
79 2jwn_A Embryonic polyadenylate 99.7 4.5E-16 1.5E-20 118.7 10.2 77 73-154 35-116 (124)
80 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-16 1.2E-20 117.1 9.4 78 72-153 24-106 (110)
81 1x4g_A Nucleolysin TIAR; struc 99.7 5.3E-16 1.8E-20 116.6 10.3 78 71-154 22-100 (109)
82 2kvi_A Nuclear polyadenylated 99.7 2.6E-16 8.8E-21 116.2 8.4 75 72-154 8-84 (96)
83 2cqp_A RNA-binding protein 12; 99.7 3.2E-16 1.1E-20 114.9 8.8 80 70-153 11-95 (98)
84 1fjc_A Nucleolin RBD2, protein 99.7 3.1E-16 1.1E-20 114.6 8.7 77 72-153 14-91 (96)
85 2xnq_A Nuclear polyadenylated 99.7 5.4E-16 1.9E-20 115.7 10.2 74 72-153 20-95 (97)
86 2la4_A Nuclear and cytoplasmic 99.7 3.5E-16 1.2E-20 115.6 9.0 78 69-152 22-100 (101)
87 2krb_A Eukaryotic translation 99.7 2E-16 6.9E-21 113.2 7.4 75 74-148 1-81 (81)
88 2dng_A Eukaryotic translation 99.7 1.3E-15 4.6E-20 113.0 12.0 77 72-154 13-94 (103)
89 2dh8_A DAZ-associated protein 99.7 5.2E-16 1.8E-20 115.3 9.6 79 70-153 12-95 (105)
90 2kt5_A RNA and export factor-b 99.7 5.3E-16 1.8E-20 119.0 9.9 80 70-153 31-114 (124)
91 2ek1_A RNA-binding protein 12; 99.7 2.2E-16 7.5E-21 114.9 7.4 78 70-151 11-93 (95)
92 2dgt_A RNA-binding protein 30; 99.7 1.1E-15 3.9E-20 111.4 11.2 75 71-153 7-82 (92)
93 2fc8_A NCL protein; structure 99.7 1.1E-15 3.9E-20 112.6 11.3 79 72-154 13-93 (102)
94 2nlw_A Eukaryotic translation 99.6 3.6E-16 1.2E-20 117.6 8.7 82 72-153 13-100 (105)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.8E-16 1.6E-20 125.3 9.9 79 72-154 70-153 (165)
96 2dhg_A TRNA selenocysteine ass 99.6 8.7E-16 3E-20 113.6 10.4 78 72-153 7-90 (104)
97 2cpx_A Hypothetical protein FL 99.6 6.1E-16 2.1E-20 116.3 9.7 78 72-154 23-106 (115)
98 1x4d_A Matrin 3; structural ge 99.6 2E-16 6.8E-21 122.4 7.1 77 71-153 12-92 (102)
99 2div_A TRNA selenocysteine ass 99.6 9.1E-16 3.1E-20 112.6 10.2 78 72-153 7-94 (99)
100 2jvo_A Nucleolar protein 3; nu 99.6 7.1E-16 2.4E-20 117.6 10.0 75 71-153 28-103 (108)
101 2dnp_A RNA-binding protein 14; 99.6 1.3E-15 4.5E-20 110.6 10.4 75 71-153 6-81 (90)
102 1wf1_A RNA-binding protein RAL 99.6 8.2E-16 2.8E-20 115.7 9.7 74 72-153 25-100 (110)
103 3ns6_A Eukaryotic translation 99.6 2.2E-16 7.4E-21 118.2 6.3 81 73-153 5-93 (100)
104 3s7r_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 108.9 10.6 75 71-150 8-87 (87)
105 2cq4_A RNA binding motif prote 99.6 5.8E-16 2E-20 116.9 8.3 76 73-153 24-104 (114)
106 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.3E-16 1.8E-20 108.6 7.5 72 75-151 1-77 (77)
107 2e44_A Insulin-like growth fac 99.6 1E-15 3.6E-20 111.8 9.3 78 72-153 13-92 (96)
108 2lea_A Serine/arginine-rich sp 99.6 4.6E-16 1.6E-20 123.1 7.9 79 72-154 45-128 (135)
109 1whx_A Hypothetical protein ri 99.6 5.5E-16 1.9E-20 118.5 7.9 75 73-153 9-84 (111)
110 2jvr_A Nucleolar protein 3; RN 99.6 8E-16 2.7E-20 120.2 8.9 80 70-153 24-105 (111)
111 2cqg_A TDP-43, TAR DNA-binding 99.6 5.2E-15 1.8E-19 109.6 12.8 77 72-154 13-94 (103)
112 1x5p_A Negative elongation fac 99.6 6.3E-15 2.1E-19 108.6 13.0 78 69-154 10-88 (97)
113 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 128.5 10.3 79 72-154 44-125 (164)
114 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 128.5 9.9 76 73-153 3-80 (205)
115 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4.2E-20 123.9 9.8 82 69-154 23-107 (130)
116 1x4e_A RNA binding motif, sing 99.6 2.2E-16 7.4E-21 113.1 4.8 76 71-150 2-82 (85)
117 1x4b_A Heterogeneous nuclear r 99.6 2.5E-15 8.7E-20 113.7 10.7 77 72-153 25-106 (116)
118 2f3j_A RNA and export factor b 99.6 6.7E-15 2.3E-19 121.9 14.2 80 70-153 84-167 (177)
119 1wel_A RNA-binding protein 12; 99.6 1.4E-15 4.8E-20 117.2 9.3 77 72-153 23-104 (124)
120 2kn4_A Immunoglobulin G-bindin 99.6 1.9E-15 6.4E-20 119.3 10.2 78 72-153 68-150 (158)
121 1s79_A Lupus LA protein; RRM, 99.6 8.4E-16 2.9E-20 117.3 7.9 78 72-154 9-90 (103)
122 2dgw_A Probable RNA-binding pr 99.6 4.6E-15 1.6E-19 107.6 11.4 76 72-153 8-87 (91)
123 2mss_A Protein (musashi1); RNA 99.6 9.5E-16 3.2E-20 107.4 7.5 70 76-150 1-75 (75)
124 3egn_A RNA-binding protein 40; 99.6 1.2E-15 4.1E-20 119.6 8.7 79 72-154 43-131 (143)
125 2rs2_A Musashi-1, RNA-binding 99.6 2.3E-15 7.9E-20 114.5 9.9 80 69-153 20-104 (109)
126 2dis_A Unnamed protein product 99.6 3.1E-15 1.1E-19 111.5 10.2 79 72-154 6-93 (109)
127 2j76_E EIF-4B, EIF4B, eukaryot 99.6 9.4E-16 3.2E-20 114.2 7.1 76 72-153 17-98 (100)
128 2dit_A HIV TAT specific factor 99.6 7.7E-15 2.6E-19 111.8 12.3 84 70-153 11-102 (112)
129 2i2y_A Fusion protein consists 99.6 1.6E-15 5.4E-20 119.7 8.6 77 72-153 71-148 (150)
130 2ki2_A SS-DNA binding protein 99.6 3.8E-16 1.3E-20 112.9 4.6 74 75-153 2-80 (90)
131 3n9u_C Cleavage and polyadenyl 99.6 2.8E-15 9.4E-20 122.2 10.0 78 72-153 53-137 (156)
132 1x4f_A Matrin 3; structural ge 99.6 2.2E-15 7.6E-20 119.0 8.7 78 71-154 22-103 (112)
133 1x5o_A RNA binding motif, sing 99.6 3.7E-15 1.3E-19 112.2 9.3 77 72-152 23-111 (114)
134 2m2b_A RNA-binding protein 10; 99.6 2.1E-15 7.3E-20 117.4 8.0 78 72-154 21-109 (131)
135 2e5g_A U6 snRNA-specific termi 99.6 8.4E-15 2.9E-19 107.4 10.7 76 72-153 6-82 (94)
136 3md3_A Nuclear and cytoplasmic 99.6 6.3E-15 2.1E-19 113.3 10.1 76 72-151 85-165 (166)
137 2hzc_A Splicing factor U2AF 65 99.6 3.4E-15 1.1E-19 106.7 8.0 70 72-148 4-85 (87)
138 3md3_A Nuclear and cytoplasmic 99.6 3.9E-15 1.3E-19 114.4 8.8 75 75-153 1-79 (166)
139 1wg1_A KIAA1579 protein, homol 99.6 4.9E-15 1.7E-19 107.7 8.6 76 72-154 3-79 (88)
140 2e5i_A Heterogeneous nuclear r 99.6 1.4E-14 4.8E-19 116.0 11.8 77 72-154 21-103 (124)
141 1fxl_A Paraneoplastic encephal 99.6 8.9E-15 3E-19 112.5 10.1 76 74-153 2-82 (167)
142 1iqt_A AUF1, heterogeneous nuc 99.6 1.8E-15 6.2E-20 105.7 5.6 70 76-150 1-75 (75)
143 2cpy_A RNA-binding protein 12; 99.6 8.9E-15 3E-19 111.5 9.9 79 71-154 12-95 (114)
144 1b7f_A Protein (SXL-lethal pro 99.6 6.9E-15 2.4E-19 113.9 9.5 77 73-153 2-83 (168)
145 2wbr_A GW182, gawky, LD47780P; 99.6 3.8E-15 1.3E-19 115.4 7.8 74 73-152 6-80 (89)
146 2pe8_A Splicing factor 45; RRM 99.6 8.3E-15 2.8E-19 112.8 9.5 81 72-153 6-94 (105)
147 1wez_A HnRNP H', FTP-3, hetero 99.6 1E-14 3.4E-19 110.5 9.7 79 71-154 12-93 (102)
148 3s6e_A RNA-binding protein 39; 99.6 1.1E-14 3.8E-19 114.5 10.3 83 71-153 4-93 (114)
149 1wg5_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 108.9 10.0 76 72-152 13-93 (104)
150 2db1_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 113.0 8.8 77 72-153 15-98 (118)
151 2qfj_A FBP-interacting repress 99.6 1.8E-14 6.1E-19 116.1 10.8 78 72-153 123-205 (216)
152 4f02_A Polyadenylate-binding p 99.6 1.2E-14 4.2E-19 120.3 10.1 77 73-153 102-181 (213)
153 3q2s_C Cleavage and polyadenyl 99.6 6.4E-15 2.2E-19 126.4 8.6 77 73-153 67-150 (229)
154 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-15 6.1E-20 111.7 4.3 76 72-153 15-95 (101)
155 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-14 4E-19 110.8 8.7 74 70-149 4-84 (114)
156 3nmr_A Cugbp ELAV-like family 99.6 1.3E-14 4.4E-19 112.8 9.0 75 72-150 93-174 (175)
157 3v4m_A Splicing factor U2AF 65 99.6 1.3E-14 4.4E-19 111.5 8.8 82 72-153 3-97 (105)
158 4f02_A Polyadenylate-binding p 99.5 2.4E-14 8.4E-19 118.5 10.1 78 72-153 13-95 (213)
159 2g4b_A Splicing factor U2AF 65 99.5 1.8E-14 6.1E-19 112.3 8.7 75 72-150 92-171 (172)
160 2lmi_A GRSF-1, G-rich sequence 99.5 1.2E-14 4E-19 109.7 7.1 78 71-153 8-92 (107)
161 2bz2_A Negative elongation fac 99.5 2.9E-14 1E-18 111.3 9.4 75 71-153 36-111 (121)
162 2lcw_A RNA-binding protein FUS 99.3 7E-16 2.4E-20 117.0 0.0 79 72-154 5-96 (116)
163 1b7f_A Protein (SXL-lethal pro 99.5 3.6E-14 1.2E-18 109.8 9.6 75 72-150 87-168 (168)
164 1l3k_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 112.1 10.1 78 71-153 10-92 (196)
165 1wf0_A TDP-43, TAR DNA-binding 99.5 2.5E-14 8.7E-19 103.4 7.8 75 72-153 3-78 (88)
166 3pgw_S U1-70K; protein-RNA com 99.5 2.7E-14 9.1E-19 133.7 10.0 78 72-153 100-182 (437)
167 2cq2_A Hypothetical protein LO 99.5 3.1E-14 1.1E-18 113.2 8.7 76 72-153 23-106 (114)
168 1fje_B Nucleolin RBD12, protei 99.5 3E-14 1E-18 112.0 8.4 77 72-153 97-174 (175)
169 2yh0_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 112.2 9.4 78 72-153 112-194 (198)
170 2adc_A Polypyrimidine tract-bi 99.5 2.9E-14 9.8E-19 119.3 8.5 77 72-153 32-110 (229)
171 2hgl_A HNRPF protein, heteroge 99.5 3.1E-14 1.1E-18 114.7 8.4 76 72-152 42-124 (136)
172 3pgw_A U1-A; protein-RNA compl 99.5 5.1E-14 1.7E-18 119.4 10.0 75 72-151 205-281 (282)
173 2qfj_A FBP-interacting repress 99.5 4.1E-14 1.4E-18 114.0 8.9 78 72-153 26-108 (216)
174 2xs2_A Deleted in azoospermia- 99.5 2.6E-14 8.8E-19 105.7 7.1 76 72-153 7-86 (102)
175 1l3k_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 110.9 10.2 78 72-154 102-184 (196)
176 1qm9_A Polypyrimidine tract-bi 99.5 2.9E-14 9.9E-19 114.7 7.5 76 73-153 2-79 (198)
177 2cjk_A Nuclear polyadenylated 99.5 3.5E-14 1.2E-18 110.2 7.6 75 73-152 86-165 (167)
178 3ue2_A Poly(U)-binding-splicin 99.5 4E-14 1.4E-18 111.8 7.9 81 73-153 19-109 (118)
179 3u1l_A PRE-mRNA-splicing facto 99.5 5.4E-14 1.8E-18 124.2 9.4 81 72-154 132-230 (240)
180 3nmr_A Cugbp ELAV-like family 99.5 8E-14 2.8E-18 108.2 8.8 77 73-153 2-88 (175)
181 2dnn_A RNA-binding protein 12; 99.5 1.2E-13 4.1E-18 107.1 9.6 76 72-153 14-93 (109)
182 1fxl_A Paraneoplastic encephal 99.5 1.3E-13 4.3E-18 106.1 9.4 75 72-150 86-167 (167)
183 3d2w_A TAR DNA-binding protein 99.5 2.1E-13 7.1E-18 100.7 9.0 76 71-153 8-84 (89)
184 2hgn_A Heterogeneous nuclear r 99.5 4.1E-14 1.4E-18 114.5 5.3 77 72-153 44-123 (139)
185 1qm9_A Polypyrimidine tract-bi 99.5 2.8E-13 9.5E-18 109.0 10.0 76 72-152 118-196 (198)
186 2voo_A Lupus LA protein; RNA-b 99.5 2.5E-13 8.5E-18 113.6 10.1 77 73-154 108-188 (193)
187 2ghp_A U4/U6 snRNA-associated 99.4 2.1E-13 7.1E-18 116.2 8.8 76 72-152 208-290 (292)
188 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.1E-18 104.4 7.4 60 91-150 39-103 (104)
189 2adc_A Polypyrimidine tract-bi 99.4 7.9E-13 2.7E-17 110.6 11.5 77 72-153 149-228 (229)
190 3smz_A Protein raver-1, ribonu 99.4 4.8E-13 1.6E-17 113.5 10.0 78 72-153 182-264 (284)
191 2dha_A FLJ20171 protein; RRM d 99.4 1.9E-13 6.4E-18 108.5 6.9 76 72-152 21-104 (123)
192 3sde_A Paraspeckle component 1 99.4 4.7E-13 1.6E-17 114.2 9.3 76 72-153 20-96 (261)
193 2cjk_A Nuclear polyadenylated 99.4 3.8E-13 1.3E-17 104.3 7.7 74 73-152 2-80 (167)
194 1fje_B Nucleolin RBD12, protei 99.4 3E-13 1E-17 106.3 7.1 81 71-153 10-91 (175)
195 2g4b_A Splicing factor U2AF 65 99.4 6.1E-13 2.1E-17 103.6 8.3 74 73-153 3-88 (172)
196 2yh0_A Splicing factor U2AF 65 99.4 6.3E-13 2.2E-17 105.7 8.4 74 73-153 3-88 (198)
197 2ghp_A U4/U6 snRNA-associated 99.4 8.5E-13 2.9E-17 112.4 9.4 76 72-152 39-117 (292)
198 2hgm_A HNRPF protein, heteroge 99.4 4.8E-13 1.6E-17 107.0 7.1 77 71-152 39-120 (126)
199 3smz_A Protein raver-1, ribonu 99.4 3.1E-12 1.1E-16 108.5 10.4 78 72-153 93-175 (284)
200 3sde_A Paraspeckle component 1 99.3 3.6E-12 1.2E-16 108.8 9.5 78 72-153 94-179 (261)
201 3tyt_A Heterogeneous nuclear r 99.3 2.3E-12 8E-17 108.2 7.6 75 72-150 121-204 (205)
202 3tht_A Alkylated DNA repair pr 99.3 5.1E-12 1.7E-16 116.7 8.6 77 71-153 15-99 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.1E-11 1.1E-15 92.9 10.9 74 74-154 10-91 (100)
204 2j8a_A Histone-lysine N-methyl 99.1 8.6E-11 2.9E-15 97.5 8.0 75 75-153 3-96 (136)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 2.7E-10 9.2E-15 88.7 8.6 77 70-152 4-85 (91)
206 3dxb_A Thioredoxin N-terminall 99.1 2.9E-10 1E-14 94.6 8.4 82 72-153 122-213 (222)
207 1owx_A Lupus LA protein, SS-B, 99.0 3.2E-09 1.1E-13 85.6 9.7 74 72-151 16-94 (121)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 1.8E-09 6.1E-14 84.9 7.5 76 68-149 10-91 (95)
209 1wey_A Calcipressin 1; structu 98.4 1.7E-06 5.8E-11 68.9 10.2 77 74-152 5-83 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.0 1E-05 3.6E-10 65.8 7.1 80 72-153 19-100 (117)
211 2dhx_A Poly (ADP-ribose) polym 97.7 0.0002 6.7E-09 57.2 9.8 76 69-153 3-84 (104)
212 1whv_A Poly(A)-specific ribonu 97.6 0.00013 4.4E-09 58.0 6.2 57 72-136 14-70 (100)
213 3ctr_A Poly(A)-specific ribonu 97.4 0.00017 5.8E-09 57.4 4.6 54 75-136 7-60 (101)
214 1wwh_A Nucleoporin 35, nucleop 96.4 0.012 4.3E-07 47.5 7.9 72 72-151 22-95 (119)
215 2kn4_A Immunoglobulin G-bindin 96.3 0.0025 8.4E-08 49.8 3.3 42 106-147 2-45 (158)
216 2i2y_A Fusion protein consists 95.8 0.0034 1.2E-07 48.9 2.2 38 115-153 13-51 (150)
217 2l08_A Regulator of nonsense t 95.7 0.0063 2.2E-07 47.7 3.2 75 73-150 8-93 (97)
218 1uw4_A UPF3X; nonsense mediate 95.4 0.045 1.5E-06 42.0 7.0 65 76-144 3-74 (91)
219 3p3d_A Nucleoporin 53; structu 95.2 0.025 8.6E-07 46.6 5.3 73 74-152 7-98 (132)
220 3d45_A Poly(A)-specific ribonu 95.2 0.038 1.3E-06 53.0 7.3 56 74-137 440-495 (507)
221 3pq1_A Poly(A) RNA polymerase; 94.2 0.03 1E-06 53.9 3.7 57 73-134 52-108 (464)
222 2g0c_A ATP-dependent RNA helic 74.4 6.4 0.00022 27.5 5.3 71 76-151 2-75 (76)
223 3j21_T 50S ribosomal protein L 58.9 29 0.00098 26.3 6.5 60 75-136 23-84 (86)
224 3swz_A Steroid 17-alpha-hydrox 54.8 14 0.00047 32.7 4.7 62 78-145 18-80 (494)
225 1vq8_S 50S ribosomal protein L 52.4 31 0.0011 26.0 5.7 56 76-133 23-80 (85)
226 2zkr_s 60S ribosomal protein L 40.5 61 0.0021 27.2 6.2 58 76-135 94-153 (156)
227 3u5e_X 60S ribosomal protein L 38.3 66 0.0022 26.6 6.0 59 75-135 79-139 (142)
228 3mdm_A Cholesterol 24-hydroxyl 37.2 34 0.0012 29.7 4.3 43 86-133 7-50 (456)
229 3iz5_X 60S ribosomal protein L 36.6 70 0.0024 26.7 6.0 58 76-135 90-149 (152)
230 4a17_R RPL23A, 60S ribosomal p 36.6 69 0.0023 26.8 5.9 59 75-135 87-147 (150)
231 2e7g_A Putative ribosome-bindi 36.5 56 0.0019 25.7 5.1 46 89-134 20-77 (129)
232 3n9y_A Cholesterol SIDE-chain 33.6 72 0.0025 27.8 5.8 41 89-134 32-73 (487)
233 3tbg_A Cytochrome P450 2D6; mo 31.8 40 0.0014 29.2 3.9 39 90-133 31-70 (479)
234 3e6i_A CYPIIE1, P450-J, cytoch 31.7 62 0.0021 28.0 5.1 41 89-134 30-71 (476)
235 1pqs_A Cell division control p 31.5 80 0.0028 23.2 5.0 51 82-135 8-64 (77)
236 3ld6_A Lanosterol 14-alpha dem 29.6 71 0.0024 28.0 5.2 40 92-136 34-74 (461)
237 4eyt_A Telomerase associated p 27.5 45 0.0015 26.7 3.1 56 73-135 11-66 (129)
238 3lpe_A Putative transcription 27.3 1.8E+02 0.0061 21.4 6.3 50 88-138 22-73 (92)
239 2l69_A Rossmann 2X3 fold prote 26.9 1.1E+02 0.0038 24.5 5.4 37 87-134 34-70 (134)
240 3k9v_A 1,25-dihydroxyvitamin D 25.2 1.1E+02 0.0039 26.3 5.6 41 89-134 48-89 (482)
241 2kkc_A Sequestosome-1; P62, PB 24.5 1.7E+02 0.0058 22.6 5.9 51 86-137 42-92 (102)
242 4e8u_A Putative uncharacterize 24.1 1.3E+02 0.0044 25.5 5.5 44 86-133 33-81 (172)
243 3nxu_A Cytochrome P450 3A4; al 22.9 1.1E+02 0.0039 26.5 5.2 39 91-134 35-74 (485)
244 1x60_A Sporulation-specific N- 22.7 1.2E+02 0.0041 20.8 4.4 62 72-138 7-69 (79)
245 2cu1_A Mitogen-activated prote 22.4 88 0.003 24.8 3.9 67 77-150 19-85 (103)
246 3pm0_A Cypib1, cytochrome P450 22.2 1.1E+02 0.0037 26.8 4.9 38 91-133 30-68 (507)
247 3i3k_A Lanosterol 14-alpha dem 21.7 1.1E+02 0.0039 26.5 4.9 39 92-135 34-73 (461)
No 1
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=146.25 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCCe-EEEcCCCCCCChHHHHHHHHHHhccc-Cce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKV-LCVSALHPKASDELIKDTLYREYKKF-GDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rT-LyVsNLneKiS~edLKe~Ly~eFsKF-G~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+..| |||+||++++++++||+.|+.+|++| |+| +| + .|||||+|.++|+|++|++.|||+.||||+|+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-t-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-T-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-C-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-e-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 46777 99999999999999999999999999 599 44 2 2999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
+|+..+
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 998865
No 2
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=145.63 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+..+|||.||+.++++++|++.|+.+|++||+| .|.|.++.. +|+|||+|.+.++|++|+..|||..|.|++|+|++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 5678999999999999999999999999999999 787776655 99999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++...
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98753
No 3
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=131.12 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+..+|||.||+..+++++|++.|+.+|++||+| .|.|..+.. +|+|||+|++.++|++|+..||+..|.|+.|+|+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 6778999999999999999999999999999999 788875544 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9764
No 4
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=128.90 Aligned_cols=84 Identities=25% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC-----eee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD-----KVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd-----KpL 145 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+ |+|||+|++.++|++|+..||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDH----MREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHH----HGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 56789999999999999998874 9999999 7888775 999999999999999999999999999 999
Q ss_pred EEeecccccCCCcCCCC
Q psy4441 146 VVDPVYETHASRSRPRS 162 (249)
Q Consensus 146 kVe~a~~~~~~~~~~r~ 162 (249)
+|+.+.....+..+.|+
T Consensus 86 ~V~~a~~~~~~~~rsrs 102 (108)
T 1x4c_A 86 RVKVDGPRSPSYGRSRS 102 (108)
T ss_dssp EEEESSCCSCCCCCSSC
T ss_pred EEEeCCCCCCCCCCCCC
Confidence 99999886544433333
No 5
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=7.3e-19 Score=128.45 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+..+|+|.||+..+++++|++.|+.+|++||+| .|.|..+.. +|+|||+|.+.++|+.|+..|++..|.|++|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999999999999999 777776544 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 86 a~~~ 89 (97)
T 1nu4_A 86 AKTD 89 (97)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 9775
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=128.45 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.++.+|||.||+..+++++|++. |++||+| +|.|.++. . +|+|||+|.+.++|++|+..||+..|.|++|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~----F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSL----FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHH----HHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 56789999999999999998874 9999999 78887543 3 89999999999999999999999999999999
Q ss_pred Eeeccc
Q psy4441 147 VDPVYE 152 (249)
Q Consensus 147 Ve~a~~ 152 (249)
|++|+.
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999864
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=129.95 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
|+.+.++|+|.||+..+++++|++. |++||+| +|.|..+. . +|+|||+|++.++|++|+..||+..|.|+.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~----F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDM----CRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHH----HTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHH----HHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3467899999999999999998875 9999999 78887543 3 899999999999999999999999999999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999998654
No 8
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=8.4e-18 Score=128.73 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
||....+|||.||+..+++++|++. |++||+| +|.|..+.. +|+|||+|++.|+|++|+.+|++..|.|+.|+
T Consensus 1 gP~~~~~lfV~nLp~~~te~~L~~~----F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 1 GPLGSGNIFIKNLDKSIDNKALYDT----FSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHH----HhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4555678999999999999998875 9999999 788886655 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+.+...
T Consensus 77 V~~a~~~ 83 (115)
T 4f25_A 77 VGRFKSR 83 (115)
T ss_dssp EEESSCC
T ss_pred EEECCCc
Confidence 9998754
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=120.13 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~----f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGI----FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHH----HTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH----HHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 467899999999999999998875 9999999 78887653 2 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999998764
No 10
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.5e-17 Score=121.14 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~----f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEV----FSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHH----HTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 56789999999999999998874 9999999 67776543 2 899999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987654
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=2e-17 Score=117.82 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+.++|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|+.|+..|++..|.|++|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHA----AFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHH----HHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHH----HHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 5789999999999999999887 49999999 77776542 2 99999999999999999999999999999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
|++++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99875
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-17 Score=119.61 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|++.++|++|+..|++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~----f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQM----FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHH----GGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 467899999999999999998864 9999999 788876644 999999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+++....
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998753
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=118.53 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+....+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYR----IFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHH----HTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHH----HHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 36789999999999999999877 49999999 78887543 2 8999999999999999999999999999999
Q ss_pred EEeecc
Q psy4441 146 VVDPVY 151 (249)
Q Consensus 146 kVe~a~ 151 (249)
+|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999875
No 14
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=119.36 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
+..+....+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLRE----VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHH----HHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHH----HHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34457889999999999999999877 49999999 78777543 3 8999999999999999999999999999
Q ss_pred eeeEEeeccc
Q psy4441 143 KVAVVDPVYE 152 (249)
Q Consensus 143 KpLkVe~a~~ 152 (249)
++|+|++++.
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=118.14 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHH----HHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 56789999999999999998875 9999999 78887542 2 89999999999999999999999999999999
Q ss_pred Eeeccc
Q psy4441 147 VDPVYE 152 (249)
Q Consensus 147 Ve~a~~ 152 (249)
|+++..
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 999875
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.3e-16 Score=120.37 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
..+..+|||.||+..+++++|++. |++||.| .|.|..+. . +|+|||+|.+.++|+.|+.+|++..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAA----FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 367899999999999999998874 9999999 78887542 2 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 88 ~V~~a~~~~ 96 (115)
T 2dgo_A 88 RTNWATRKP 96 (115)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999998764
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=120.67 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
....+..+|||.||+..+++++|++ +|++||+| .|.|..+.. +|+|||+|++.++|+.|+..|++..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRK----AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHH----TTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4447889999999999999999886 59999999 788876533 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 999998753
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=119.07 Aligned_cols=80 Identities=18% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EE-EEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SI-RLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sV-vV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
..+..+|+|.||+..+++++|++. |++||+| .| .|..+. . +|+|||+|++.++|++|+..|++..|.|++
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDT----FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHH----HHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 457899999999999999998875 9999999 67 777642 2 899999999999999999999999999999
Q ss_pred eEEeeccccc
Q psy4441 145 AVVDPVYETH 154 (249)
Q Consensus 145 LkVe~a~~~~ 154 (249)
|+|+++....
T Consensus 78 l~v~~a~~~~ 87 (96)
T 1x5t_A 78 ITVSYAFKKD 87 (96)
T ss_dssp CEEEESCCCC
T ss_pred EEEEEecccC
Confidence 9999998753
No 19
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-17 Score=118.92 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC------C-cceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL------D-ERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~------~-rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
..+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+..|++..|.|
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGV----FSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHH----HHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 457899999999999999998875 9999999 77776432 3 7999999999999999999999999999
Q ss_pred eeeEEeeccccc
Q psy4441 143 KVAVVDPVYETH 154 (249)
Q Consensus 143 KpLkVe~a~~~~ 154 (249)
+.|+|+++....
T Consensus 78 ~~l~V~~a~~~~ 89 (98)
T 2cpf_A 78 HKLEVRISERAT 89 (98)
T ss_dssp EECEEECSSCSS
T ss_pred eEEEEEEccCCC
Confidence 999999998753
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=121.12 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|||.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|++|+.+|++..|.|+.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRR----VFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHH----HHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 6789999999999999999887 49999999 78887542 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998754
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=118.30 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
..+.++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKL----FSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHH----HHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 467899999999999999998875 9999999 78887543 2 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 999998763
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=121.55 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|++.|+|++|+..|++..|.|+.|+|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDV----FYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 57789999999999999998874 9999999 788866655 99999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++...
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98753
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-17 Score=124.17 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+.+||+..|.|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAV----FGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHH----HHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 46789999999999999998875 9999999 78887643 3 899999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
++++...
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998764
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.4e-17 Score=118.98 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
..+..+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|++|+..|++..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQE----LFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHT----TSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 35789999999999999999876 59999999 78887542 2 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998753
No 25
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=5.5e-17 Score=120.64 Aligned_cols=77 Identities=25% Similarity=0.184 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|..+ .. +|+|||+|.+.++|++|+..|++..|.|+.|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQEL----FAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHH----HHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467899999999999999998874 9999999 7777644 33 89999999999999999999999999999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=119.27 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..||+..|.|+.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~----f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQV----FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHH----HHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHH----HHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 67899999999999999998875 9999999 78887643 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|++++...
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99998753
No 27
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=4.5e-17 Score=138.15 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
...++|||.||+..+++++|++.|+.+|++||+| .|+|.++.. +|+|||+|.+.++|++|+..|++..|.|++|+|++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 4688999999999999999999999999999999 788887666 99999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
++..
T Consensus 87 a~~~ 90 (282)
T 3pgw_A 87 AKTD 90 (282)
T ss_pred eccC
Confidence 8654
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=119.66 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+.++|+|.||+..+++++|++. |++||+| .|.|..+ .. +|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~----f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAA----FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHH----HTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----hhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 67899999999999999998875 9999999 7888654 22 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998754
No 29
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=117.96 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...++|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|++|+|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~----~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYE----LFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHH----HHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHH----HHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 5678999999999999999876 49999999 78887543 3 899999999999999999999999999999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 30
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.4e-16 Score=118.65 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....++|+|.||+..+++++|++. |++||+| .|.|. +++|||+|.+.++|++|+.+|++..|.|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~----F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKA----FSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHH----HHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 367899999999999999998875 9999999 67776 57999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
+....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98765
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=119.39 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
....+|||.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|++.++|+.|+..|++..|.|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQL----FSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHH----HHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHH----HHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 57899999999999999998874 9999999 788876543 8999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998753
No 32
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=8.5e-17 Score=116.41 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|.+.++|++|+..|++..|.|+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~----f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDK----FNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHH----HHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 57899999999999999998875 9999999 787776443 8999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
++....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998753
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=1.1e-16 Score=113.62 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+|+|.||+..+++++|++. |++||+| .|.|..+ .. +|+|||+|.+.++|++|+..|++..|.|++|+|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~----f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNA----FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHH----HTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 58999999999999998874 9999999 7877754 23 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8753
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=7.2e-17 Score=115.31 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC-----CcceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL-----DERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-----~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
+..+|+|.||+..+++++|++. |++||+| .|.|..+. .+|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEI----FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHH----HHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 4679999999999999998874 9999999 78886554 389999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998653
No 35
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=121.49 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=70.4
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHC--CCCeecCee
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSK--PRIILYDKV 144 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~al--ng~~ffdKp 144 (249)
+....+.++|||.||+..+++++|++ +|++||+| .|.|.++ +|+|||+|++.++|++|+..| ++..|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~----~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIA----LGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHH----TTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 44456789999999999999999886 59999999 6777653 899999999999999999976 467899999
Q ss_pred eEEeeccccc
Q psy4441 145 AVVDPVYETH 154 (249)
Q Consensus 145 LkVe~a~~~~ 154 (249)
|.|+++....
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998653
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=116.87 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.....+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|++|+..|++..|.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWE----LFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHH----HHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 36789999999999999999876 49999999 78887643 2 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999997753
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2.4e-16 Score=116.86 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecC---ee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYD---KV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffd---Kp 144 (249)
.+..+|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|+.|+.+|++..|.+ ++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRL----FQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHH----HTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 56899999999999999998864 9999999 77877543 3 8999999999999999999999999998 99
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 89 l~V~~a~~~ 97 (105)
T 2dnh_A 89 LVVKFADTD 97 (105)
T ss_dssp CEEEESCSS
T ss_pred EEEEECccC
Confidence 999999875
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1.1e-16 Score=117.52 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDL----CSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHH----HHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHH----HHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 579999999999999998774 9999999 78887553 2 8999999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
++....
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 998753
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=116.89 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC--cceEEEEeCCHHHHHHHHHHC-CCCeecCee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD--ERVAYVCFRSAEDARDAKHSK-PRIILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~--rGqAFVtFr~~EdA~~Al~al-ng~~ffdKp 144 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+ .. +|+|||+|++.++|+.|+..| ++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIREL----FSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHH----HHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCEEEEeCCCCcCCHHHHHHH----HHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 57899999999999999998875 9999999 7888765 22 899999999999999999999 999999999
Q ss_pred eEEeeccccc
Q psy4441 145 AVVDPVYETH 154 (249)
Q Consensus 145 LkVe~a~~~~ 154 (249)
|+|+++....
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998753
No 40
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=114.92 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|. +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSL----FEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHH----HHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 467899999999999999998764 9999999 67776 79999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
+....
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98753
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=116.01 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEI----CKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHH----HTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 67889999999999999998875 9999999 77776543 3 899999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998764
No 42
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=125.39 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCe--ecCee
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRII--LYDKV 144 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~--ffdKp 144 (249)
+....++++|||.||+..+++++|++ +|++||+| +|.+.+ .+|||||.|++.++|++|+..|++.. |.|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~----lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVE----ALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHH----HHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHH----HHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34446889999999999999999876 59999999 677764 48999999999999999999998875 77999
Q ss_pred eEEeeccc
Q psy4441 145 AVVDPVYE 152 (249)
Q Consensus 145 LkVe~a~~ 152 (249)
|.|++++.
T Consensus 89 i~V~~S~~ 96 (100)
T 3r27_A 89 AFVNYSTS 96 (100)
T ss_dssp EEEEECSC
T ss_pred EEEEeccc
Confidence 99999875
No 43
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=8.2e-17 Score=123.49 Aligned_cols=75 Identities=23% Similarity=0.150 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCee-----e
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKV-----A 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKp-----L 145 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+ |+|||+|++.++|++|+.+||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~----F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDH----MREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHH----HGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999998875 9999999 7888764 99999999999999999999999999999 6
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+.+...
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665553
No 44
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=116.45 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|+|.||+..+++++|++. |++||+|.|....+.. +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEV----FEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHH----CSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 357899999999999999998875 9999999433333344 99999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
+....
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 45
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.4e-17 Score=123.74 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-------cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-------ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-------rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
....+|||.||+..+++++|++ |..+|++||+| .|.|..+.. +|+|||+|++.|+|++|+..||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~-~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLK-RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHH-STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHH-HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 5678999999999999999873 33579999999 788875432 58999999999999999999999999999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
+|+|+++...
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998775
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=117.15 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCC------CCe
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKP------RII 139 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~aln------g~~ 139 (249)
..+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|+ +..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEV----LQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHH----HHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 367899999999999999998875 9999999 78887553 2 8999999999999999999999 999
Q ss_pred ecCeeeEEeecccc
Q psy4441 140 LYDKVAVVDPVYET 153 (249)
Q Consensus 140 ffdKpLkVe~a~~~ 153 (249)
|.|+.|+|+++...
T Consensus 88 ~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 88 LDGRQLKVDLAVTR 101 (111)
T ss_dssp SSSCEEEEECCCCC
T ss_pred EcCEEEEEEECCCC
Confidence 99999999999775
No 47
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.4e-16 Score=120.06 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
+...++|+|.||+..+++++|++ +|++||.| .|.|..+.. +|+|||+|.+.++|+.|+.+|++..|.|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYD----IFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHH----HHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 46789999999999999999876 49999999 788877666 9999999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
++...
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 98764
No 48
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=121.98 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
....++|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|++.++|++|+.+|++..|.|+.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQL----FERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHH----HHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 367899999999999999998874 9999999 788875532 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|++++...
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=115.29 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
...++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+. |++..|.|+.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREY----FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHH----HSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 57899999999999999998875 9999999 78887542 2 8999999999999999998 999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999875
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=117.06 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--------EEEeccC---C-cceEEEEeCCHHHHHHHHHHCCC
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--------IRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--------VvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng 137 (249)
+....+|||.||+..+++++|++. |++||.| . |.|..+. . +|+|||+|.+.++|++|+.+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADY----FKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHH----HTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 467899999999999999998875 9999999 6 7887553 2 89999999999999999999999
Q ss_pred CeecCeeeEEeecc
Q psy4441 138 IILYDKVAVVDPVY 151 (249)
Q Consensus 138 ~~ffdKpLkVe~a~ 151 (249)
..|.|+.|+|+.|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.8e-17 Score=123.01 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+.+|++..|.|+.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDK----FAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHH----HHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56789999999999999998874 9999999 68776542 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997654
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-16 Score=116.95 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
...++|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..+++ .|.|+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKY----FEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHH----HHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 57899999999999999998875 9999999 78887643 2 89999999999999999999999 79999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|++++...
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=118.42 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|+.|+.+|++..|.|+.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHD----KFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHH----HHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 5678999999999999999876 49999999 78887543 2 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9998763
No 54
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=115.71 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec--CeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY--DKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff--dKpLkVe 148 (249)
....+|+|.||+..+++++|++ +|++||+| .|.+... +|+|||+|++.++|++|+.+|++..|. |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAR----EFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHH----HHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 5678999999999999999887 49999999 6777643 899999999999999999999999999 9999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
++...
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99764
No 55
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.5e-16 Score=125.07 Aligned_cols=79 Identities=23% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+.+|++..|.|+.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYEL----FSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 67899999999999999998875 9999999 78887553 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998754
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=120.57 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|++.++|++|+..|++..|.|+.|+|+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQM----FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHH----GGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHH----HHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 57899999999999999998874 9999999 788876544 9999999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
+++..
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98753
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=120.40 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccC-ce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCC-CCeecCeeeE
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFG-DL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKP-RIILYDKVAV 146 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG-~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~aln-g~~ffdKpLk 146 (249)
.++|+|.||+..+++++|++. |++|| +| +|.|.++. . +|+|||+|.+.|+|+.|+.+++ ++.|.|++|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~----F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQ----LQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHH----HHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHH----HHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 479999999999999999875 99999 78 78887542 3 9999999999999999999874 5679999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 77 V~~a~~~ 83 (91)
T 2lxi_A 77 MHYSDPK 83 (91)
T ss_dssp EECCCSC
T ss_pred EEEcCCC
Confidence 9998764
No 58
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-17 Score=126.55 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC--CCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP--RIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln--g~~ffdKpLkVe 148 (249)
.+..+|||.||+..+++++|++. |++||+| .|.|.++ +|+|||+|++.++|++|+..|+ +..|.|++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~l----F~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISL----GLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHH----HHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 78899999999999999998874 9999999 7888764 8999999999999999999876 478999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
++....
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 997653
No 59
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=113.05 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHC-CCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSK-PRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~al-ng~~ffdKpLkVe~ 149 (249)
....+|+|.||+..+++++|++. |++||+| .|.+.+ .+|+|||+|++.++|++|+..| ++..|.|++|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~----f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNH----FYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHH----HHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHH----HHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 56789999999999999998875 9999999 777775 3799999999999999999998 99999999999998
Q ss_pred cc
Q psy4441 150 VY 151 (249)
Q Consensus 150 a~ 151 (249)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 60
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=2.5e-16 Score=116.96 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCee---cC
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIIL---YD 142 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~f---fd 142 (249)
..+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+.+|++..| .+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPL----FEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHH----HHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 357899999999999999998875 9999999 78887642 2 89999999999999999999999887 89
Q ss_pred eeeEEeeccccc
Q psy4441 143 KVAVVDPVYETH 154 (249)
Q Consensus 143 KpLkVe~a~~~~ 154 (249)
++|+|+++....
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998753
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=2.7e-16 Score=118.89 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQM----FMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHH----HGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 56789999999999999998874 9999999 78887543 2 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|++++..
T Consensus 99 V~~a~~~ 105 (115)
T 2cpz_A 99 VQLKRSK 105 (115)
T ss_dssp EECCCCS
T ss_pred EEEcCCC
Confidence 9999775
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=121.02 Aligned_cols=75 Identities=27% Similarity=0.436 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
...++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~----f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAA----FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHH----HGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHH----HHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 67899999999999999998874 9999999 78887542 2 99999999999999999999999999999999
Q ss_pred Eeec
Q psy4441 147 VDPV 150 (249)
Q Consensus 147 Ve~a 150 (249)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 63
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-17 Score=122.20 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce---EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCC----ee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL---SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRI----IL 140 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V---sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~----~f 140 (249)
..=.||+|.||+..+++++|++. |++||.| +|+|.++. . +|+|||+|.+.++|++|+.+||+. .|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~----F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTA----LSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHH----STTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHH----HHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 45679999999999999999885 9999964 68887653 2 899999999999999999999986 58
Q ss_pred cCeeeEEeeccc
Q psy4441 141 YDKVAVVDPVYE 152 (249)
Q Consensus 141 fdKpLkVe~a~~ 152 (249)
.|++|.|++|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999975
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.3e-16 Score=120.77 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLAST----FLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHH----TTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 57889999999999999998874 9999999 78887542 2 89999999999999999999999999999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 65
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=117.65 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecccc
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVYET 153 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~~~ 153 (249)
.+|+|.||+..+++++|++. |++||+| .|.|..+ .+|+|||+|.+.++|++|+.+|++..|.|+.|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERA----FSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHH----HHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 38999999999999998875 9999999 7888776 7899999999999999999999999999999999999876
Q ss_pred c
Q psy4441 154 H 154 (249)
Q Consensus 154 ~ 154 (249)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=2.6e-16 Score=112.92 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+.++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAH----FHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHH----HGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEE
Confidence 3579999999999999998875 9999999 78887542 2 999999999999999999 99999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998763
No 67
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=114.73 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCc-e-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCC-CeecCeeeEE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGD-L-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPR-IILYDKVAVV 147 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~-V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng-~~ffdKpLkV 147 (249)
.....+|||.||+..+++++|++. |++||+ | .+.+.. +|+|||+|++.++|++|+.+||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQL----FGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHH----HHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH----HHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 357789999999999999998875 999999 5 455532 89999999999999999999999 9999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999875
No 68
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=116.13 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
....+|+|.||+..+++++|++. |++||.|.+.+.....+|+|||+|.+.++|++|+..||+..|.|+.|+|+++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~----F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRA----LRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHH----HHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHH----HHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56789999999999999998875 99999995455544459999999999999999999999999999999999987
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 69
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=7.4e-17 Score=117.83 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=63.3
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccC--ce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFG--DL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG--~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.+|+|.||+..+++++|++. |++|| +| +|.|..+ +. +|+|||+|.+.++|++|+.+||+..|.|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~----F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEA----VHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHH----HHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHH----HHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 48999999999999998875 99999 88 7877754 23 899999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 998775
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.7e-16 Score=116.09 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceE---------EEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLS---------IRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs---------VvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
....+|||.||+..+++++|++ +|++||.|. |.|..+. . +|+|||+|.+.++|++|+..|++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLAD----FFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHH----HHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEcCCCCCCCHHHHHH----HHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 5789999999999999999886 499999995 7777552 2 899999999999999999999999
Q ss_pred eecCeeeEEeeccccc
Q psy4441 139 ILYDKVAVVDPVYETH 154 (249)
Q Consensus 139 ~ffdKpLkVe~a~~~~ 154 (249)
.|.|+.|+|+++....
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999998753
No 71
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=115.78 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|++..|.|+.|+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~----f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDI----FSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHH----HHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHH----HHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4689999999999999998874 9999999 78887553 2 899999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+++....
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9997754
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=119.23 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|++..|.|+.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGI----FEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHH----HTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 467789999999999999998875 9999999 78887543 2 8999999999999999999999999999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|++++..
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998764
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=2.8e-16 Score=123.76 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
..+.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..||+..|.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~----F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREV----FSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHH----HTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34578899999999999999998874 9999999 78887542 3 89999999999999999999999999999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
.|+|+++...
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999998764
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.7e-16 Score=114.31 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|+|.||+..+++++|++ +|++||+| .|.|.++ +|+|||+|++.++|++|+..|++..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRK----LFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHH----HTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 5778999999999999999876 49999999 7877743 899999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
....
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8753
No 75
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=125.00 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC--CCeecCee
Q psy4441 68 SDRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP--RIILYDKV 144 (249)
Q Consensus 68 Reg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln--g~~ffdKp 144 (249)
+....+.++|||.||+..+++++|++ +|++||+| .|.|..+ +|+|||+|++.++|++|+..++ +..|.|++
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~----lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVIS----LGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHH----HHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 34446789999999999999999887 49999999 7888764 8999999999999999999887 46799999
Q ss_pred eEEeeccccc
Q psy4441 145 AVVDPVYETH 154 (249)
Q Consensus 145 LkVe~a~~~~ 154 (249)
|.|+++....
T Consensus 99 l~V~~a~~k~ 108 (119)
T 2ad9_A 99 IYIQFSNHKE 108 (119)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCCC
Confidence 9999997653
No 76
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.6e-16 Score=113.64 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc--Cce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF--GDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF--G~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
...++|||.||+..+++++|++. |++| |+| .|.+. +|+|||+|++.++|++|+..||+..|.|+.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKE----FNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHH----HHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHH----HHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 67899999999999999998875 9999 899 66654 6899999999999999999999999999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
+++...
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998753
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=121.11 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCC--CeecCeeeE
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPR--IILYDKVAV 146 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng--~~ffdKpLk 146 (249)
...+.++|||.||+..+++++|++ +|++||+| .|.|.+ .+|+|||+|++.++|++|+..|++ ..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~----~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVE----ALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHH----HHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHH----HHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999999999999886 59999999 677765 389999999999999999998864 459999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 85 V~~a~~~ 91 (104)
T 1wex_A 85 FNYSTSK 91 (104)
T ss_dssp EEECSSS
T ss_pred EEEccCc
Confidence 9999764
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.2e-16 Score=114.36 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc----CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD----LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~----~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
....+|||.||+..+++++|++. |++|| | .|.|..+ .. +|+|||+|++.++|++|+ +|++..|.|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEF----FRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHH----TTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHH----HHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 56789999999999999998874 99999 8 7888755 23 899999999999999999 999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 87 ~V~~a~~~~ 95 (104)
T 1wi8_A 87 RVDVADQAQ 95 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998753
No 79
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=4.5e-16 Score=118.74 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+..+|||.||+..+++++|++. |++||+| .|.|..+ .. +|+|||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAH----FSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHH----HHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 5689999999999999998874 9999999 7888754 22 999999999999999999 89999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+++....
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998653
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.6e-16 Score=117.08 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|++..|.|+.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQE----KFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHH----HHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 5678999999999999999886 49999999 78886543 2 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9998764
No 81
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=116.57 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|..+ +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~----F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQT----FSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHH----HHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 357889999999999999998875 9999999 7877765 89999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++...
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98753
No 82
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.6e-16 Score=116.18 Aligned_cols=75 Identities=16% Similarity=0.335 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+..+|||.||+. .+++++|++. |++||+| .|.|. +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~----F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRI----FSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHH----HTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHH----HHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5788999999998 9999998764 9999999 77775 79999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++...
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97754
No 83
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=114.89 Aligned_cols=80 Identities=14% Similarity=0.000 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
+.....+|+|.||+..+++++|++. |++||.| .+++..+ .. +|+|||+|.+.++|++|+..|++..|.|+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~----F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDF----FYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHH----TTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHH----HHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3456789999999999999998875 9999999 4444432 22 899999999999999999999999999999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998764
No 84
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=114.58 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|+|.||+..+++++|++. |++||+|.++ ..+.. +|+|||+|.+.++|++|+..|++..|.|+.|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~----F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEV----FEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHH----HCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46789999999999999998874 9999999433 33333 999999999999999999999999999999999999
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 774
No 85
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=5.4e-16 Score=115.74 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....+|||.||+. .+++++|++ +|++||+| .|.|. +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~----~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFR----IFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHH----HHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHH----HHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 6789999999998 999999887 59999999 67774 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
++..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8763
No 86
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.5e-16 Score=115.56 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..+....+|+|.||+..+++++|++. |++||+| .|.+. ..+|+|||+|++.++|++|+..|++..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~----f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPL----FQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHH----HHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHH----HHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456899999999999999998874 9999999 78876 24899999999999999999999999999999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
++++.
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99865
No 87
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=113.22 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCChHH--HHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCe-eeEE
Q psy4441 74 YKVLCVSALHPKASDEL--IKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDK-VAVV 147 (249)
Q Consensus 74 ~rTLyVsNLneKiS~ed--LKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdK-pLkV 147 (249)
.++|+|.||+..++++. .++.|..+|++||+| .|.|.+... +|+|||+|++.++|++|+.+|||..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 36899999998874422 556666789999999 787775433 89999999999999999999999999999 8887
Q ss_pred e
Q psy4441 148 D 148 (249)
Q Consensus 148 e 148 (249)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.3e-15 Score=113.04 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++|| | .|.|..+. . +|+|||+|++.++|++|+ .|++..|.|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAI----FKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHH----TTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHH----HHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 67899999999999999998875 99998 8 78887553 2 899999999999999999 9999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998753
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=115.31 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
...+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+.. ++..|.|+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSY----FSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHH----HHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3468899999999999999998874 9999999 78887653 2 89999999999999999999 999999999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 999998764
No 90
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=5.3e-16 Score=118.97 Aligned_cols=80 Identities=24% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+..+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQEL----FAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHH----HHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3477899999999999999998864 9999999 78887543 2 8999999999999999999999999999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+++...
T Consensus 107 ~V~~a~~~ 114 (124)
T 2kt5_A 107 DIQLVASQ 114 (124)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 99999774
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=2.2e-16 Score=114.86 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--C-C-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--L-D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~-~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
+.....+|+|.||+..+++++|++. |++||.| .+++..+ . . +|+|||+|.+.++|++|+.+|++..|.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDF----FYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHH----TTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3456789999999999999998875 9999999 4555533 2 2 899999999999999999999999999999
Q ss_pred eEEeecc
Q psy4441 145 AVVDPVY 151 (249)
Q Consensus 145 LkVe~a~ 151 (249)
|+|+.+.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999875
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=111.35 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|+|.||+..+++++|++. |++||+| .|.|. +++|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAK----FEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHH----HHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 367899999999999999998875 9999999 78776 45999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9775
No 93
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=112.63 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEecc-CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD-LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~-~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
...++|+|.||+..+++++|++ +|++|+.|.+...+. .. +|+|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~----~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKE----SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHH----TSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHH----HhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 6789999999999999999886 599998775544433 33 89999999999999999999999999999999999
Q ss_pred ccccc
Q psy4441 150 VYETH 154 (249)
Q Consensus 150 a~~~~ 154 (249)
++...
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98753
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=117.62 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCChHH--HHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCe-ee
Q psy4441 72 PSYKVLCVSALHPKASDEL--IKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDK-VA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~ed--LKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdK-pL 145 (249)
....+|+|.||+..+.++. .++.|..+|++||+| .|.|.+..+ +|+|||+|.+.++|++|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 3468999999999774322 555666779999999 787775433 89999999999999999999999999999 99
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+.+.+.
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998764
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=4.8e-16 Score=125.35 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+.+||+..|.|++|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEK----FCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----hhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 56789999999999999998865 9999999 78887542 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99997754
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.7e-16 Score=113.64 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcc-cCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCe-ecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKK-FGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRII-LYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsK-FG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~-ffdKpL 145 (249)
....+|+|.||+..+++++|++. |++ ||+| .|.|..+ .. +|+|||+|.+.++|++|+.+|++.. |.|++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEF----FVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHH----HHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 56789999999999999998875 999 9999 7777654 33 9999999999999999999999999 999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+++...
T Consensus 83 ~v~~a~~~ 90 (104)
T 2dhg_A 83 RLSVAIPK 90 (104)
T ss_dssp CCCBCCCC
T ss_pred EEEEccCC
Confidence 99999764
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=116.32 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-----EEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-----SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-----sVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
....+|||.||+..+++++|++ +|++||.| .+.+. +.. +|+|||+|.+.++|+.|+.+|++..|.|++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVS----LFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHH----HTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 5678999999999999999886 59999998 23333 344 8999999999999999999999999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998754
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=122.40 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCC--CeecCeeeE
Q psy4441 71 PPSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPR--IILYDKVAV 146 (249)
Q Consensus 71 ~~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng--~~ffdKpLk 146 (249)
..+.++|||.||+. .+++++|++ +|++||+| .|.|.+ .+|||||+|++.++|++|+..|++ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~----lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQ----LVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHT----TTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHH----HHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 46789999999999 999999886 59999999 777764 369999999999999999999885 459999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999865
No 99
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.1e-16 Score=112.63 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce--EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCee-
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL--SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV- 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp- 144 (249)
.+.++|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..||+..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRA----FATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHH----HHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHH----HHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 67899999999999999998875 9999997 56666543 2 899999999999999999999999999999
Q ss_pred ---eEEeecccc
Q psy4441 145 ---AVVDPVYET 153 (249)
Q Consensus 145 ---LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999998765
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=7.1e-16 Score=117.63 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|||.||+..+++++|++ +|++||+| .|.|. +|+|||+|.+.++|++|+.+|++..|.|+.|+|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNE----IFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHH----HHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHH----HHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 46789999999999999999876 49999999 77777 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8775
No 101
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=110.62 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....+|||.||+..+++++|++. |++||+| .|.|. +++|||+|++.++|++|+..|++..|.|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSL----FERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHH----HHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999998875 9999999 67776 45999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9875
No 102
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=8.2e-16 Score=115.70 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCC-CChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPK-ASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....+|||.||+.. +++++|++. |++||+| .|.| .+|+|||+|.+.++|++|+.+|++..|.|+.|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~----F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETI----FSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHH----HGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHH----HHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 46689999999999 999998875 9999999 7877 379999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9865
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2.2e-16 Score=118.23 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCC--CCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecC-ee
Q psy4441 73 SYKVLCVSALHP--KASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYD-KV 144 (249)
Q Consensus 73 e~rTLyVsNLne--KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffd-Kp 144 (249)
..+||+|.||+. ..+.+..++.|..+|++||+| +|.|..+.. +|+|||+|.+.++|++|+..||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999997 222244455555679999999 788875532 8999999999999999999999999999 99
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+.+...
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998653
No 104
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=1.6e-15 Score=108.93 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
..+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+.. ++..|.|+.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDY----FTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHH----HTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEE
Confidence 357889999999999999998875 9999999 78887543 3 89999999999999999955 6677999999
Q ss_pred EEeec
Q psy4441 146 VVDPV 150 (249)
Q Consensus 146 kVe~a 150 (249)
.|+.|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.8e-16 Score=116.90 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
..++|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDF----FSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHH----HTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 5689999999999999998874 9999999 78887543 2 899999999999999999 99999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998764
No 106
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=108.60 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=64.5
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.||+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..++ ..|.|+.|+|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~----F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREY----FGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHH----HTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 47999999999999998875 9999999 78887543 2 8999999999999999999999 889999999998
Q ss_pred cc
Q psy4441 150 VY 151 (249)
Q Consensus 150 a~ 151 (249)
|.
T Consensus 76 a~ 77 (77)
T 1uaw_A 76 AF 77 (77)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 107
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=111.75 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EE-EEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SI-RLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sV-vV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
....+|+|.||+..+++++|++. |++||+| .| .|..+...|.|||+|.+.++|++|+..|++..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~----F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSL----LVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHH----HHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHH----HHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999998875 9999999 67 467666666799999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=4.6e-16 Score=123.13 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|++|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRR----VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHH----HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4678999999999999999887 49999999 78887542 2 89999999999999999999999999999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|++++...
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=118.48 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
...+|+|.||+..+++++|++. |++||.| .|.|.. .+|+|||+|.+.++|++|+..||+..|.|++|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~----F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQET----FSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHH----HHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3579999999999999998875 9999999 666653 48999999999999999999999999999999999987
Q ss_pred cc
Q psy4441 152 ET 153 (249)
Q Consensus 152 ~~ 153 (249)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=8e-16 Score=120.19 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccC-ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFG-DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG-~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.+....+|+|.||+..+++++|++. |++|| +| .+.|.....+|+|||+|++.|+|++|+..||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~----F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDL----ARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHH----HHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHH----HHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456789999999999999999875 99999 89 677754445999999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+.+...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 111
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-15 Score=109.58 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+.. +..|.|+.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEY----FSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHH----HGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHH----HHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEE
Confidence 67889999999999999998874 9999999 78887542 3 89999999999999999984 6689999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99998753
No 112
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-15 Score=108.63 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.......+|||.|| .+++++|++ +|++||+| .|.|. ..+|+|||+|++.++|++|+.+|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~----~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRG----AFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHH----HHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHH----HHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33467889999997 789988776 59999999 67774 34899999999999999999999999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+++....
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9997653
No 113
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.2e-15 Score=128.55 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC--eeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD--KVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd--KpLkVe 148 (249)
....+|||.||+..+++++|++ +|++||+| .|+|.....+|||||.|++.++|++|+.+|||..|+| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~----~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHH----HHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHH----HHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 4556789999999999999776 59999999 6777644458899999999999999999999999987 999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
+++...
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998753
No 114
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.1e-15 Score=128.53 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=68.6
Q ss_pred CCCeEEEcCCC-CCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 73 SYKVLCVSALH-PKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 73 e~rTLyVsNLn-eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
++.||||.||+ .++++++|++ +|++||+| +|+|.++ .+|+|||.|.+.++|+.|+..|||..|+|++|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~----~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFN----VFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHH----HHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHH----HHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 8999998665 59999999 7888764 4899999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 115
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.2e-15 Score=123.86 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC--eee
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD--KVA 145 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd--KpL 145 (249)
..++.--.|||.||+..+++++|++ +|++||+| +|+|....+..||||.|.+.++|++|+.+|||..|+| +.|
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~----lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHH----HHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHH----HHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3345555677999999999999766 59999999 7877654433349999999999999999999999999 999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|++++...
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999997653
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-16 Score=113.10 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+.+..+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.++|++|+.+||+..|.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~----~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVK----LCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHT----TSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHH----HHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 35788999999999999999886 59999999 78777542 2 8999999999999999999999999999998
Q ss_pred EEeec
Q psy4441 146 VVDPV 150 (249)
Q Consensus 146 kVe~a 150 (249)
+|+..
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 87643
No 117
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=113.68 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
...++|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+.. ++..|.|+.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNY----YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHH----HTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 45689999999999999998874 9999999 78887653 2 89999999999999999988 99999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 100 V~~a~~~ 106 (116)
T 1x4b_A 100 PKRAVAR 106 (116)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 9999775
No 118
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=6.7e-15 Score=121.88 Aligned_cols=80 Identities=24% Similarity=0.185 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
++.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|++|+..|++..|.|++|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~----F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQEL----FAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHH----HHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 4477899999999999999998875 9999999 78887543 3 8999999999999999999999999999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+++...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99998764
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=117.18 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E-EEEe--ccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S-IRLS--HDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s-VvV~--r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||.| . +++. .+.. +|+|||+|++.++|++|+. |++..|.|+.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDF----FKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHH----SCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 56789999999999999998874 9999999 4 4443 2233 9999999999999999999 999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998653
No 120
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.9e-15 Score=119.33 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|||.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|++..|.|++|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~----F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRV----FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHH----HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 56789999999999999998875 9999999 78887642 2 99999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999875
No 121
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=117.33 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...+||||.||+..+++++|++. |++||+| +|.|..+.. +|+|||+|++.++|++|+. +++..|.|+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~----F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEW----LEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHH----HHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHH----HhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 46789999999999999998875 9999999 788876432 9999999999999999998 9999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
+.+....
T Consensus 84 ~~~~~~~ 90 (103)
T 1s79_A 84 LFKDDYF 90 (103)
T ss_dssp EEHHHHH
T ss_pred EEchHHH
Confidence 9876643
No 122
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=107.64 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
....+|+|.||+..+++++|++. |++| +| .|.|..+. . +|+|||+|++.++|++|+. |++..|.|+.|+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~----F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEF----LAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHH----HTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHH----HhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 57889999999999999998875 9999 88 78887652 2 8999999999999999999 9999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998764
No 123
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=9.5e-16 Score=107.43 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|+.|+. |++..|.|+.|+|+.|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHY----FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHH----HHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHH----HHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999998874 9999999 78887543 2 8999999999999999997 9999999999999875
No 124
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=119.57 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--------EEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--------IRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--------VvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
....+|||.||+..+++++|++. |++||.| . |++..+.. +|+|||+|.+.++|+.|+..||+..|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~----F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYI----FGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHH----HGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 56789999999999999998874 9999988 4 45555555 999999999999999999999999999
Q ss_pred CeeeEEeeccccc
Q psy4441 142 DKVAVVDPVYETH 154 (249)
Q Consensus 142 dKpLkVe~a~~~~ 154 (249)
|++|+|+++....
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 125
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=114.45 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
+...+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|++|+..++ ..|.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~----F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREY----FGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHH----HTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHH----HHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCE
Confidence 44567899999999999999998874 9999999 78887653 2 8999999999999999998875 889999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
.|+|+.+...
T Consensus 95 ~l~V~~a~~~ 104 (109)
T 2rs2_A 95 TIDPKVAFPR 104 (109)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999998764
No 126
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=111.49 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCc-e-EEEEe-ccC---C-cceEEEEeCCHHHHHHHHHHCC--CCeecC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGD-L-SIRLS-HDL---D-ERVAYVCFRSAEDARDAKHSKP--RIILYD 142 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~-V-sVvV~-r~~---~-rGqAFVtFr~~EdA~~Al~aln--g~~ffd 142 (249)
.+..+|+|.||+..+++++|++. |++||. | .|.|. .+. . +|+|||+|.+.++|+.|+..|+ ++.|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~----f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEE----IAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHH----HHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHH----HHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 46789999999999999998875 999998 8 67776 332 2 8999999999999999999996 589999
Q ss_pred eeeEEeeccccc
Q psy4441 143 KVAVVDPVYETH 154 (249)
Q Consensus 143 KpLkVe~a~~~~ 154 (249)
+.|+|+++....
T Consensus 82 ~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 HQIAVDWAEPEI 93 (109)
T ss_dssp BCCEEEESCSSC
T ss_pred CeEEEEEcCCCC
Confidence 999999997653
No 127
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-16 Score=114.20 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC----C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL----D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~----~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
...++|+|.||+..+++++|++. |++|| | .|.|..+. . +|+|||+|++.++|++|+ .|++..|.|+.|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEF----FRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHH----SCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 67899999999999999998875 99999 9 78887543 2 899999999999999999 999999999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+.+...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998763
No 128
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.7e-15 Score=111.76 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCC-------hHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 70 RPPSYKVLCVSALHPKAS-------DELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS-------~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
.+...++|+|.||-.... .+++++.|..+|++||+| .|.|.....+|+|||+|++.++|++|+..||+..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457899999999954432 245788999999999999 776643223999999999999999999999999999
Q ss_pred CeeeEEeecccc
Q psy4441 142 DKVAVVDPVYET 153 (249)
Q Consensus 142 dKpLkVe~a~~~ 153 (249)
|++|+|+++...
T Consensus 91 gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 GRQITAQAWDGT 102 (112)
T ss_dssp TEECEEEECCSC
T ss_pred CcEEEEEEeCCC
Confidence 999999998764
No 129
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.6e-15 Score=119.74 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|||.||+..+++++|++. |++||+| .|.|..+ .+|+|||+|.+.++|+.|+..||+..|.|++|+|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~----F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERA----FGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHH----HHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 67899999999999999998874 9999999 7888765 5899999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3.8e-16 Score=112.90 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
++|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|++.+ |++|+..|++..|.|++|+|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKE----LFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTT----THHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHH----HHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 6899999999999999887 59999999 88887553 3 899999999999 9999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
|...
T Consensus 77 a~~~ 80 (90)
T 2ki2_A 77 ANPK 80 (90)
T ss_dssp C---
T ss_pred cCCC
Confidence 8775
No 131
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=122.19 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccC--ce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFG--DL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG--~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
....+|||.||+..+++++|++. |++|| +| .|.|..+ +. +|+|||+|.+.++|++|+..|++..|.|+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~----F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQV----IRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHH----HHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 46789999999999999998875 99999 88 7888754 23 899999999999999999999999999999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|+++...
T Consensus 129 l~V~~a~~~ 137 (156)
T 3n9u_C 129 VDVRPATRQ 137 (156)
T ss_dssp CEEEECCHH
T ss_pred eEEEEcCCC
Confidence 999998543
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=118.97 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCC-CChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC--CCeecCeeeE
Q psy4441 71 PPSYKVLCVSALHPK-ASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP--RIILYDKVAV 146 (249)
Q Consensus 71 ~~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln--g~~ffdKpLk 146 (249)
..+..+|||.||+.. +++++|++ +|++||+| .|.|.+ .+|+|||+|++.++|++|+..|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~----lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLK----LAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHT----TTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHH----HHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999996 99999886 59999999 788864 38999999999999999999875 4569999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|+++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997653
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=112.16 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCee-------
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIIL------- 140 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~f------- 140 (249)
.+..+|||.||+..+++++|++ +|++||+| .|.|..+ .. +|+|||+|.+.++|++|+..||+..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELEN----MLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHH----TTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 5678999999999999999876 59999999 7777654 23 89999999999999999999999988
Q ss_pred -cCeeeEEeeccc
Q psy4441 141 -YDKVAVVDPVYE 152 (249)
Q Consensus 141 -fdKpLkVe~a~~ 152 (249)
.+++|.|.++..
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 688899998874
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=117.43 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--EEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCC----ee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--IRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRI----IL 140 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--VvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~----~f 140 (249)
...++|||.||+..+++++|++. |++||+| . |+|.++. . +|+|||+|.+. +|++|+..|++. .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~----F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGA----LAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHH----HGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 56789999999999999998875 9999999 5 7887654 2 99999999999 999999999999 99
Q ss_pred cCeeeEEeeccccc
Q psy4441 141 YDKVAVVDPVYETH 154 (249)
Q Consensus 141 fdKpLkVe~a~~~~ 154 (249)
.|+.|+|+++....
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999997754
No 135
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.4e-15 Score=107.40 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
...++|||.||+..+++++|++. |++||+| .|.+.+...+ +|||+|.+.++|++|+. |++..|.|+.|.|+.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~----F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEY----FLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHH----GGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHH----HHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 46789999999999999998875 9999999 5533332324 99999999999999999 9999999999999987
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 653
No 136
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.3e-15 Score=113.27 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| .+.|..+ +. +|+|||+|++.++|+.|+..|++..|.|++|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~----f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNA----FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHH----HTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCceEEECCCCCCCCHHHHHHH----HhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 56789999999999999998875 9999999 7877754 23 89999999999999999999999999999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
|++|.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99985
No 137
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.4e-15 Score=106.69 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhccc----C-------ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKF----G-------DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRII 139 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKF----G-------~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ 139 (249)
...++|+|.||+..+++++|++. |++| | +| ++.+.++ +|+|||+|++.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDF----FNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHH----HHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 45789999999999999998875 9999 8 88 6777643 899999999999999999 999999
Q ss_pred ecCeeeEEe
Q psy4441 140 LYDKVAVVD 148 (249)
Q Consensus 140 ffdKpLkVe 148 (249)
|.|+.|+|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999997
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.9e-15 Score=114.45 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
+||+|.||+..+++++|++ +|++||+| +|.|..+.. +|+|||+|.+.++|++|+..|++..|.|+.|+|+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~----~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQ----YFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHH----HHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHH----HHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 6899999999999999887 49999999 788875442 899999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.9e-15 Score=107.73 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|+|.||+..+++++|++. |++| +| .+.|. ..+|+|||+|.+.++|++|+..|++..|.|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDL----LKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHH----TCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35689999999999999998875 9999 88 67774 33899999999999999999999999999999999998
Q ss_pred cccc
Q psy4441 151 YETH 154 (249)
Q Consensus 151 ~~~~ 154 (249)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7643
No 140
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.4e-14 Score=116.02 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCCCe--EEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcc-eEEEEeCCHHHHHHHHHHCCCCeecC--eee
Q psy4441 72 PSYKV--LCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDER-VAYVCFRSAEDARDAKHSKPRIILYD--KVA 145 (249)
Q Consensus 72 ~e~rT--LyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rG-qAFVtFr~~EdA~~Al~alng~~ffd--KpL 145 (249)
.+.++ |||.||+..+++++|++ +|++||+| .|+|... .| ||||+|.+.++|++|+.+|||..|+| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~----~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYT----VCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHH----HHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHH----HHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 45555 56899999999998665 59999999 6777643 48 59999999999999999999999998 699
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|++|+...
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999997753
No 141
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=8.9e-15 Score=112.52 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
..+|+|.||+..+++++|++ +|++||+| .|.+..+. . +|+|||+|.+.++|+.|+..|++..|.|++|+|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~----~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRS----LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHH----HHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHH----HHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 57999999999999999886 59999999 78887543 2 7999999999999999999999999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
++...
T Consensus 78 ~~~~~ 82 (167)
T 1fxl_A 78 YARPS 82 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98654
No 142
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1.8e-15 Score=105.68 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=61.8
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
||+|.||+..+++++|++. |++||+| .|.+..+. . +|+|||+|++.++|++|+.. ++..|.|+.|+|+.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREY----FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHH----HHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999999999998875 9999999 78876542 2 89999999999999999975 778899999999875
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=111.47 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceE--EEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLS--IRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs--VvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+.+..+|+|.||+..+++++|++. |++||.|. |.|..+. . +|+|||+|++.|+|++|+.. ++..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~----F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQF----LEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHH----TTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHH----HHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 467899999999999999998875 99999994 7776543 3 99999999999999999987 9999999999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
.|+++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986543
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=6.9e-15 Score=113.93 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...+|+|.||+..+++++|++ +|++||+| .|.+..+.. +|+|||.|.+.++|+.|+..|++..|.|+.|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYA----LFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHH----HHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 578999999999999999876 49999999 788775432 899999999999999999999999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
+++...
T Consensus 78 ~~~~~~ 83 (168)
T 1b7f_A 78 SYARPG 83 (168)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 145
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=3.8e-15 Score=115.42 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
...-|+|.||+.++++++|++. |.+||+| ++.+.. .+|+|||.|.+.++|+.|+.+||+..|+|++|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~l----F~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTL----CMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHH----HHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHH----HHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4567999999999999998875 9999999 677643 49999999999999999999999999999999999985
Q ss_pred c
Q psy4441 152 E 152 (249)
Q Consensus 152 ~ 152 (249)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=8.3e-15 Score=112.82 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCC--CChHHHHHHHHHHhcccCce-EEEEeccC----C-cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 72 PSYKVLCVSALHPK--ASDELIKDTLYREYKKFGDL-SIRLSHDL----D-ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 72 ~e~rTLyVsNLneK--iS~edLKe~Ly~eFsKFG~V-sVvV~r~~----~-rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
.+.++|+|.||... + ++++++.|..+|++||+| +|.|..+. . +|+|||+|.+.++|++|+.+|||..|.|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l-~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEV-DEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHh-hHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 57899999999742 3 245778888899999999 78887542 2 89999999999999999999999999999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
+|.|+++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998764
No 147
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=110.47 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+....+|+|.||+..+++++|++ +|++||.|.|.|..+ .. +|+|||+|++.|+|++|+ .+++..|.++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~----~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYN----FFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHH----SSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 46778999999999999999887 599999667777644 33 899999999999999999 68999999999999
Q ss_pred eeccccc
Q psy4441 148 DPVYETH 154 (249)
Q Consensus 148 e~a~~~~ 154 (249)
..+....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887653
No 148
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=1.1e-14 Score=114.55 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCC------hHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 71 PPSYKVLCVSALHPKAS------DELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS------~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
+.+.++|+|.|+=.... .++|++.|..+|++||+| +|+|.++..+|+|||.|.+.++|++|+.+|||..|.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35688999999765543 689999999999999999 88887766699999999999999999999999999999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
.|+|+++.+.
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998653
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=108.92 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E-EEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S-IRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s-VvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| . |.|..+ .. +|+|||+|++.++|++|+.. ++..|.++.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQF----FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHH----TTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 56789999999999999998875 9999999 4 666654 23 89999999999999999987 99999999999
Q ss_pred Eeeccc
Q psy4441 147 VDPVYE 152 (249)
Q Consensus 147 Ve~a~~ 152 (249)
|..+..
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 998754
No 150
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=8.4e-15 Score=112.99 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCc---e-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGD---L-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~---V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
.+..+|+|.||+..+++++|++. |++||. | .|.|..+ .. +|+|||+|++.++|++|+. |++..|.|+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNF----LSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHH----TTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 56789999999999999998875 999999 7 6777644 33 9999999999999999998 9999999999
Q ss_pred eEEeecccc
Q psy4441 145 AVVDPVYET 153 (249)
Q Consensus 145 LkVe~a~~~ 153 (249)
|+|..+...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998543
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.8e-14 Score=116.12 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|++.++|+.|+..|++..|.|+.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~----f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSV----FEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHH----HTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHH----HhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 46789999999999999998874 9999999 78887653 3 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 199 V~~a~~~ 205 (216)
T 2qfj_A 199 VGKAVTP 205 (216)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9999875
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=1.2e-14 Score=120.31 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
...+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|.+.|+|++|+..||+..|.|++|+|+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~----F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDT----FSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccccceECCcccccHHHHHHHH----HhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4568999999999999998875 9999999 788876544 99999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 178 a~~~ 181 (213)
T 4f02_A 178 FKSR 181 (213)
T ss_dssp CCCH
T ss_pred cCCC
Confidence 8754
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=6.4e-15 Score=126.43 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccC--ce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFG--DL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG--~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
...+|||.||+..+++++|++. |++|| +| .|.|..+. . +|+|||+|.+.++|++|+..||+..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~----F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEA----VHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHH----HHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHH----HHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 5678999999999999998875 99999 99 78887542 2 8999999999999999999999999999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
+|+++...
T Consensus 143 ~V~~a~~~ 150 (229)
T 3q2s_C 143 VVTPVNKQ 150 (229)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99998643
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=111.72 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEec---cCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSH---DLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r---~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| . ++.. +.. +|+|||+|++.++|++|+. |++..|.|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVA----ISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHH----HHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 56789999999999999998875 9999999 4 2222 223 9999999999999999998 999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+.+...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9998764
No 155
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=110.81 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=58.9
Q ss_pred CCCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEecc------CC-cceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 70 RPPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHD------LD-ERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 70 g~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~------~~-rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
+....++|||.||+..+++++|++. |++||+|.+++..+ .. +|+|||+|++.++|++|+.+|++ |.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~----F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G 77 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITAS----FRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDG 77 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHH----TTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETT
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHH----HHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCC
Confidence 3457799999999999999998875 99999997555543 23 89999999999999999999832 455
Q ss_pred eeeEEee
Q psy4441 143 KVAVVDP 149 (249)
Q Consensus 143 KpLkVe~ 149 (249)
+.+.|..
T Consensus 78 ~~~~~~~ 84 (114)
T 2dnl_A 78 KLYLCVS 84 (114)
T ss_dssp EEEEEEC
T ss_pred cEEEecc
Confidence 5554443
No 156
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.3e-14 Score=112.76 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecC---ee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYD---KV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffd---Kp 144 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+.. +|+|||+|.+.++|+.|+.+|++..+++ ++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~----F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVM----FSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHH----HHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 46789999999999999998875 9999999 788875533 8999999999999999999999987774 99
Q ss_pred eEEeec
Q psy4441 145 AVVDPV 150 (249)
Q Consensus 145 LkVe~a 150 (249)
|+|++|
T Consensus 169 l~V~~a 174 (175)
T 3nmr_A 169 MVVKFA 174 (175)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 999986
No 157
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.3e-14 Score=111.54 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCC--CCCCh----HHHHHHHHHHhcccCce-EEEEeccC------CcceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 72 PSYKVLCVSALH--PKASD----ELIKDTLYREYKKFGDL-SIRLSHDL------DERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLn--eKiS~----edLKe~Ly~eFsKFG~V-sVvV~r~~------~rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
.+.++|.|.|+= +.+.+ ++|++.|..+|+|||+| +|+|.++. .+|+|||+|++.++|++|+.+|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467899999973 23332 46889999999999999 78887653 2899999999999999999999999
Q ss_pred eecCeeeEEeecccc
Q psy4441 139 ILYDKVAVVDPVYET 153 (249)
Q Consensus 139 ~ffdKpLkVe~a~~~ 153 (249)
.|.|++|+|+++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997553
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.54 E-value=2.4e-14 Score=118.52 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..||||.||+..+++++|++. |++||+| +|.|.++. . +|+|||+|++.++|+.|+..+++..+.|+.|+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~----F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEK----FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 45789999999999999998874 9999999 78887643 3 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|..+...
T Consensus 89 ~~~~~~~ 95 (213)
T 4f02_A 89 IMWSQRD 95 (213)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9987654
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.8e-14 Score=112.33 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. + +|+|||.|.+.++|++|+..|++..|.|+.|.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~----f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKEL----LTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHH----HHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHH----HHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 45789999999999999998875 9999999 78887653 2 89999999999999999999999999999999
Q ss_pred Eeec
Q psy4441 147 VDPV 150 (249)
Q Consensus 147 Ve~a 150 (249)
|++|
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 160
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=109.68 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCc---e-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGD---L-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~---V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
..+..+|+|.||+..+++++|++. |++||. | .|.|..+. . +|+|||+|.+.++|++|+. +++..|.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~----F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNF----FSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHH----TTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHH----HHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 367889999999999999998875 999888 7 68877543 2 9999999999999999998 999999999
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
.|+|..+...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998653
No 161
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2.9e-14 Score=111.34 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+....+|||.|| .+++++|++ +|++||+| .|.|. ..+|+|||+|++.++|++|+.+|++..|.|+.|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~----~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRG----AFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHH----HHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHH----HHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357899999997 488888776 49999999 77775 3489999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 9765
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=7e-16 Score=117.05 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-E--------EEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-S--------IRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-s--------VvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
.+..+|||.||+..+++++|++ +|++||.| . |.|..+. . +|+|||+|++.++|++|+.+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVAD----YFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 4678999999999999999886 49999999 5 6676542 2 899999999999999999999999
Q ss_pred eecCeeeEEeeccccc
Q psy4441 139 ILYDKVAVVDPVYETH 154 (249)
Q Consensus 139 ~ffdKpLkVe~a~~~~ 154 (249)
.|.|+.|+|+++....
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999987653
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.53 E-value=3.6e-14 Score=109.85 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecC--ee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYD--KV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffd--Kp 144 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||.|.+.++|+.|+..|++..|.| ++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~----f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTI----FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHH----HTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHh----hhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 46789999999999999998874 9999999 78777543 2 7999999999999999999999999988 99
Q ss_pred eEEeec
Q psy4441 145 AVVDPV 150 (249)
Q Consensus 145 LkVe~a 150 (249)
|+|++|
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999875
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.52 E-value=4.7e-14 Score=112.09 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+...++|||.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|+.|+.. ++..|.|+.|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHH----HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 46788999999999999999887 49999999 78887643 2 89999999999999999976 8888999999
Q ss_pred EEeecccc
Q psy4441 146 VVDPVYET 153 (249)
Q Consensus 146 kVe~a~~~ 153 (249)
.|+.+...
T Consensus 85 ~v~~~~~~ 92 (196)
T 1l3k_A 85 EPKRAVSR 92 (196)
T ss_dssp EEEECCC-
T ss_pred eeecccCc
Confidence 99998664
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=103.42 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
.+.++|||.||+..+++++|++. |++||+| .|.|..+ .+|+|||+|++.++|++|... .+.+.++.|+|+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREF----FSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHH----STTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH----HHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 46799999999999999998875 9999999 7877654 589999999999999865321 45668999999988
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.7e-14 Score=133.71 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc---CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD---LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~---~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|||.||+..+++++|++ +|++||.| .|.|..+ .. +|+|||+|.+.++|++|+.+||++.|.|+.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~----~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRR----EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 4568999999999999999876 49999999 7878754 23 99999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9999753
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=113.20 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCCCeEEE--cCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCee-----cCe
Q psy4441 72 PSYKVLCV--SALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIIL-----YDK 143 (249)
Q Consensus 72 ~e~rTLyV--sNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~f-----fdK 143 (249)
.+.++|+| .||+..+++++|++. |++||+| .|+|.. .+|+|||+|.+.++|++|+.+|||..| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~----F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPV----LEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHH----HHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHH----HHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 56789999 559999999998875 9999999 566542 489999999999999999999999988 689
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
+|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999875
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3e-14 Score=112.00 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|+|.||+..+++++|++. |++||+|.++ ..+.. +|+|||+|.+.++|++|+..|++..|.|+.|+|+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~----F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEV----FEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHH----CTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHH----HHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 45789999999999999998875 9999999544 33333 999999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 169
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=4.7e-14 Score=112.24 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++ +|++||+| .|.|..+. . +|+|||+|.+.++|+.|+..|++..|.|+.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKE----LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHH----HHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 6789999999999999999876 49999999 78887553 2 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 188 v~~a~~~ 194 (198)
T 2yh0_A 188 VQRASVG 194 (198)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998764
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=2.9e-14 Score=119.29 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.+..+|+|.||+. .+++++|++ +|++||+| .|.|..+. +|+|||+|.+.++|++|+..|++..|.|+.|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~----~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFI----LFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHH----HHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHH----HHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5789999999999 999999886 59999999 78887654 89999999999999999999999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8764
No 171
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=3.1e-14 Score=114.66 Aligned_cols=76 Identities=16% Similarity=0.020 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCc---e-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGD---L-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~---V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
.+..+|+|.||+..+++++|++. |++||. | .|.|..+. . +|+|||+|++.++|++|+. |++..|.|+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~----F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNF----LSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHH----TTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 56789999999999999998875 999999 7 67776543 3 8999999999999999998 9999999999
Q ss_pred eEEeeccc
Q psy4441 145 AVVDPVYE 152 (249)
Q Consensus 145 LkVe~a~~ 152 (249)
|+|..+..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998754
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=5.1e-14 Score=119.36 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec-CeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY-DKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff-dKpLkVe~ 149 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+ .+|+|||.|.+.++|++|+.+||+..|. |++|+|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~----F~~~G~i~~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSML----FNQFPGFKEVRLVPG-RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHH----HHhcCCeEEEEEecC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 46789999999999999998874 9999999 6777632 2699999999999999999999999999 99999999
Q ss_pred cc
Q psy4441 150 VY 151 (249)
Q Consensus 150 a~ 151 (249)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=4.1e-14 Score=114.01 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
.+..+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||.|++.++|++|+..|++..|.|+.|+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~----f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQA----FAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHH----HGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred CcCCEEEEECCCCCCCHHHHHHH----HHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 56789999999999999998874 9999999 78887543 2 99999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+.+...
T Consensus 102 v~~~~~~ 108 (216)
T 2qfj_A 102 VGRPSNI 108 (216)
T ss_dssp EECCSCC
T ss_pred EecCCCc
Confidence 9876554
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=2.6e-14 Score=105.66 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
....+|+|.||+..+++++|++ +|++||+| .|.|..+ .. +|+|||+|++.++|++|+. ++..|.|+.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRS----FFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHH----HHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 4568999999999999999887 49999999 7777654 33 8999999999999999998 999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
..+...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 988754
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=7.7e-14 Score=110.85 Aligned_cols=78 Identities=13% Similarity=0.265 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| .|.|..+. . +|+|||.|++.++|+.|+.. ++..|.|+.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDY----FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHH----HTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred CCcceEEEeCCCCCCCHHHHHHH----HhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 45689999999999999998875 9999999 78887543 3 89999999999999999976 68889999999
Q ss_pred Eeeccccc
Q psy4441 147 VDPVYETH 154 (249)
Q Consensus 147 Ve~a~~~~ 154 (249)
|.++....
T Consensus 177 v~~a~~k~ 184 (196)
T 1l3k_A 177 VRKALSKQ 184 (196)
T ss_dssp EEECC---
T ss_pred EEecCChh
Confidence 99987654
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=114.75 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCC-CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 73 SYKVLCVSALHP-KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 73 e~rTLyVsNLne-KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
...+|+|.||+. .+++++|++ +|++||+| .|.|..+. +|+|||+|.+.++|++|+..|++..|.|++|.|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~----~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFI----LFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHH----HHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHH----HHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 999999886 59999999 78887654 899999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3.5e-14 Score=110.18 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
...+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|+.|+. +++..|.|++|+|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~----F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEF----FSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHH----HHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHH----HHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 4669999999999999998874 9999999 78887542 2 8999999999999999997 8999999999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
+++..
T Consensus 161 ~~a~p 165 (167)
T 2cjk_A 161 KRAEP 165 (167)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 99865
No 178
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=4e-14 Score=111.78 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCC-hHHHHHHHHHHhcccCce-EEEEeccC-------C-cceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 73 SYKVLCVSALHPKAS-DELIKDTLYREYKKFGDL-SIRLSHDL-------D-ERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 73 e~rTLyVsNLneKiS-~edLKe~Ly~eFsKFG~V-sVvV~r~~-------~-rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
+.++|+|.|+-+... +++|++.|..+|++||+| +|+|..+. . +|+|||+|.+.++|++|+.+|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999854321 256899999999999999 78887542 1 5999999999999999999999999999
Q ss_pred eeeEEeecccc
Q psy4441 143 KVAVVDPVYET 153 (249)
Q Consensus 143 KpLkVe~a~~~ 153 (249)
++|+|+++.+.
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=5.4e-14 Score=124.16 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCC-----ChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCee-----
Q psy4441 72 PSYKVLCVSALHPKA-----SDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIIL----- 140 (249)
Q Consensus 72 ~e~rTLyVsNLneKi-----S~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~f----- 140 (249)
...+||||.||+..+ +.+..++.|..+|++||+| +|+|.. .+|+|||+|.+.++|+.|+.+|++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 568999999999875 4455677777889999999 788874 389999999999999999999999999
Q ss_pred -------cCeeeEEeeccccc
Q psy4441 141 -------YDKVAVVDPVYETH 154 (249)
Q Consensus 141 -------fdKpLkVe~a~~~~ 154 (249)
.|+.|.|.+|+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998753
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=8e-14 Score=108.25 Aligned_cols=77 Identities=13% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC-----C-cceEEEEeCCHHHHHHHHHHCCCCeec---C
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL-----D-ERVAYVCFRSAEDARDAKHSKPRIILY---D 142 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-----~-rGqAFVtFr~~EdA~~Al~alng~~ff---d 142 (249)
+.++|||.||+..+++++|++. |++||+| +|.|.++. . +|+|||+|.+.++|++|+..|++..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLREL----FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHH----HHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 5689999999999999998874 9999999 78887553 3 799999999999999999999998777 6
Q ss_pred eeeEEeecccc
Q psy4441 143 KVAVVDPVYET 153 (249)
Q Consensus 143 KpLkVe~a~~~ 153 (249)
+++.|..+...
T Consensus 78 ~~~~~~~~~~~ 88 (175)
T 3nmr_A 78 HPIQMKPADSE 88 (175)
T ss_dssp SCCEEEECGGG
T ss_pred cceEEcccccc
Confidence 78888877654
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=107.15 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
.+..+|+|.||+..+++++|++. |++| +| .|.|..+. . +|+|||+|++.++|++|+ .|++..|.|+.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~----F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDF----FHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHH----TTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----hccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 34579999999999999999875 9999 78 78887543 2 999999999999999999 79999999999999
Q ss_pred eecccc
Q psy4441 148 DPVYET 153 (249)
Q Consensus 148 e~a~~~ 153 (249)
..+...
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 988653
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=1.3e-13 Score=106.05 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCee--
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKV-- 144 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp-- 144 (249)
....+|+|.||+..+++++|++ +|++||.| .|.+..+. . +|+|||.|.+.++|+.|+..|+|..|.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~----~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQ----LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHH----HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHHH----HHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 3567899999999999999877 59999999 77776543 2 899999999999999999999999999964
Q ss_pred eEEeec
Q psy4441 145 AVVDPV 150 (249)
Q Consensus 145 LkVe~a 150 (249)
|+|++|
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 777764
No 183
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=2.1e-13 Score=100.71 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=58.9
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
.....||+|.||+..+++++|++. |++||+| +|.|..+ .+|+|||+|++.++|+++. .. .+.+.++.|.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~----F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQF----FCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-GE-DLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHH----HTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-TC-EEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-CC-CcccCCEEEEEEE
Confidence 467899999999999999998875 9999999 7887763 5899999999999998421 11 3345699999998
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8653
No 184
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.46 E-value=4.1e-14 Score=114.52 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
....+|+|.||+..+++++|++. |++||.+.|.|..+.. +|+|||+|++.|+|++|+ .+++..|.++.|+|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~----F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNF----FSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHH----HCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 56789999999999999998875 9999944888875433 999999999999999999 899999999999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
.+...
T Consensus 119 ~a~~~ 123 (139)
T 2hgn_A 119 LNSTT 123 (139)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 88664
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=109.01 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccC-ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec-CeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFG-DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY-DKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG-~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff-dKpLkVe 148 (249)
.+..+|+|.||+..+++++|++ +|++|| +| .|.|..+ .+|+|||.|.+.++|+.|+..|++..|. |++|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~----~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKV----LFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHH----HHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHH----HHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4689999999999999999876 499999 99 7777543 3899999999999999999999999999 9999999
Q ss_pred eccc
Q psy4441 149 PVYE 152 (249)
Q Consensus 149 ~a~~ 152 (249)
+++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9875
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=2.5e-13 Score=113.62 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
..+||+|.||+..+++++|++. |++||+| .|.|.++. . +|+|||+|++.++|++|+..++. .|.|++|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~----F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEW----LEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHH----HTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHH----HhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEE
Confidence 4589999999999999998875 9999999 78887543 3 89999999999999999977765 7999999999
Q ss_pred eccccc
Q psy4441 149 PVYETH 154 (249)
Q Consensus 149 ~a~~~~ 154 (249)
.+.++.
T Consensus 183 ~~~~y~ 188 (193)
T 2voo_A 183 FKDDYF 188 (193)
T ss_dssp ETTTC-
T ss_pred EhHHHH
Confidence 987763
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.44 E-value=2.1e-13 Score=116.16 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCC-CChHHHHHHHHHHhcccCce-EEEEecc----CC-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 72 PSYKVLCVSALHPK-ASDELIKDTLYREYKKFGDL-SIRLSHD----LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 72 ~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKFG~V-sVvV~r~----~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
....+|+|.||+.. +++++|++. |++||.| .|.|..+ +. +|+|||+|.+.++|+.|+ +|++..|.|+.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~----F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRES----FEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHH----HGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE
T ss_pred CCCceEEEECCCcccCCHHHHHHH----HhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE
Confidence 67899999999999 999998874 9999999 7888764 33 899999999999999999 99999999999
Q ss_pred eEEeeccc
Q psy4441 145 AVVDPVYE 152 (249)
Q Consensus 145 LkVe~a~~ 152 (249)
|+|+++..
T Consensus 283 i~V~~a~~ 290 (292)
T 2ghp_A 283 ISVSLADK 290 (292)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99999875
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=2.1e-13 Score=104.41 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=53.5
Q ss_pred HHHHHHHHh-cccCce-EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 91 IKDTLYREY-KKFGDL-SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 91 LKe~Ly~eF-sKFG~V-sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
+++.|..+| ++||+| .|.|.++.. +|+|||+|.+.++|++|+.+|||..|.|++|+|+++
T Consensus 39 ~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 39 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 346778889 999999 788876542 999999999999999999999999999999999986
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=7.9e-13 Score=110.56 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccC-ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec-CeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFG-DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY-DKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG-~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff-dKpLkVe 148 (249)
.+..+|+|.||+..+++++|++. |++|| +| .|.|..+ .+|+|||+|++.++|++|+..|++..|. |++|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~----f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVL----FSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHH----HHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHH----HHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 56799999999999999998874 99999 99 6777442 3899999999999999999999999999 9999999
Q ss_pred ecccc
Q psy4441 149 PVYET 153 (249)
Q Consensus 149 ~a~~~ 153 (249)
+++..
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.43 E-value=4.8e-13 Score=113.50 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCC-ChHHHHHHHHHHhcccCce-EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKA-SDELIKDTLYREYKKFGDL-SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKi-S~edLKe~Ly~eFsKFG~V-sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+ ++++|++. |++||.| .|.|..+ +. +|+|||.|.+.++|++|+..|+|..|.|++|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~----f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRA----LSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHH----TCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHH----hhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 567899999999996 88888874 9999999 7887754 33 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 258 v~~a~~~ 264 (284)
T 3smz_A 258 VSFCAPG 264 (284)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9998664
No 191
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=108.46 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-----EEEEecc--CC-cceEEEEeCCHHHHHHHHHHCCCCeecCe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-----SIRLSHD--LD-ERVAYVCFRSAEDARDAKHSKPRIILYDK 143 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-----sVvV~r~--~~-rGqAFVtFr~~EdA~~Al~alng~~ffdK 143 (249)
.+..+|+|.||+..+++++|++. |++||.| .|.|..+ .. +|+|||+|++.++|++|+.. ++..|.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~----F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAF----FGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHH----HHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH----HHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 45789999999999999999875 9999874 5777643 33 89999999999999999976 88999999
Q ss_pred eeEEeeccc
Q psy4441 144 VAVVDPVYE 152 (249)
Q Consensus 144 pLkVe~a~~ 152 (249)
.|.|..+..
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999988754
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=4.7e-13 Score=114.19 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
....+|+|.||+..+++++|++. |++||+| .|.|.+ .+|+|||+|.+.++|+.|+..|++..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~----F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRL----FERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHH----TGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHH----HHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 56789999999999999998874 9999999 788754 3899999999999999999999999999999999998
Q ss_pred ccc
Q psy4441 151 YET 153 (249)
Q Consensus 151 ~~~ 153 (249)
...
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
No 193
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=3.8e-13 Score=104.34 Aligned_cols=74 Identities=12% Similarity=0.293 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
+..+|+|.||+..+++++|++. |++||+| +|.|..+. . +|+|||.|.+.++|++|+.. +..|.|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~----F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREY----FGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHH----HTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHH----HHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc
Confidence 4679999999999999998874 9999999 78887652 2 89999999999999999985 45789999999
Q ss_pred eeccc
Q psy4441 148 DPVYE 152 (249)
Q Consensus 148 e~a~~ 152 (249)
..+..
T Consensus 76 ~~~~~ 80 (167)
T 2cjk_A 76 KRAIP 80 (167)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 88754
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=3e-13 Score=106.29 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+....+|+|.||+..+++++|++.|...|..+| +.|.-..+.. +|+|||+|.+.++|++|+ +|++..|.|++|+|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 367899999999999999999987555555555 2112223333 999999999999999999 6999999999999999
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8764
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=6.1e-13 Score=103.62 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhccc----C-------ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKF----G-------DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKF----G-------~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~f 140 (249)
+.++|+|.||+..+++++|++. |++| | .| ++.+.+ .+|+|||+|.+.|+|++|+ ++++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~----F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDF----FNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHH----HHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHH----HHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 4689999999999999998874 9999 6 55 444432 3899999999999999999 9999999
Q ss_pred cCeeeEEeecccc
Q psy4441 141 YDKVAVVDPVYET 153 (249)
Q Consensus 141 fdKpLkVe~a~~~ 153 (249)
.|++|+|+.+...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=6.3e-13 Score=105.72 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccC-----------ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCee
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFG-----------DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIIL 140 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG-----------~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~f 140 (249)
..++|||.||+..+++++|++. |++|| .| .+.+. ..+|+|||+|.+.|+|++|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~----F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDF----FNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHH----HHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHH----HHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 5689999999999999998864 99995 44 33332 23899999999999999999 8999999
Q ss_pred cCeeeEEeecccc
Q psy4441 141 YDKVAVVDPVYET 153 (249)
Q Consensus 141 fdKpLkVe~a~~~ 153 (249)
.|++|+|+.+...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988665
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=8.5e-13 Score=112.38 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEe
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVD 148 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe 148 (249)
.+..||+|.||+..+++++|++ +|++||+| .|.|..+.. +|+|||+|.+.++|++|+ .+++..|.|++|.|+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYK----YFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHH----HHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHH----HHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 5789999999999999999887 49999999 788876543 899999999999999999 599999999999999
Q ss_pred eccc
Q psy4441 149 PVYE 152 (249)
Q Consensus 149 ~a~~ 152 (249)
.+..
T Consensus 114 ~~~~ 117 (292)
T 2ghp_A 114 HLTE 117 (292)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8743
No 198
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=4.8e-13 Score=107.04 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce--EEEEeccCC---cceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 71 PPSYKVLCVSALHPKASDELIKDTLYREYKKFGDL--SIRLSHDLD---ERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 71 ~~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V--sVvV~r~~~---rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
+....+|+|.||+..+++++|++. |++||-+ .|.|..+.. +|+|||+|++.|+|++|+.. ++..|.|+.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~----F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQF----FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHH----TTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHH----HhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 356789999999999999998875 9999655 577765432 99999999999999999975 6688999999
Q ss_pred EEeeccc
Q psy4441 146 VVDPVYE 152 (249)
Q Consensus 146 kVe~a~~ 152 (249)
.|..+..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988743
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=3.1e-12 Score=108.49 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC---C-cceEEEEeCCHHHHHHHHHHCCCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL---D-ERVAYVCFRSAEDARDAKHSKPRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~---~-rGqAFVtFr~~EdA~~Al~alng~~ffdKpLk 146 (249)
....+|+|.||+..+++++|++. |++||.| .|.|..+. . +|+|||.|.+.++|+.|+..|++..|.|++|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~----f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEEL----VRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHH----HHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45679999999999999998875 9999999 67776542 2 89999999999999999999999999999999
Q ss_pred Eeecccc
Q psy4441 147 VDPVYET 153 (249)
Q Consensus 147 Ve~a~~~ 153 (249)
|+++...
T Consensus 169 v~~a~~~ 175 (284)
T 3smz_A 169 VHWTDAG 175 (284)
T ss_dssp EEECCGG
T ss_pred EEECCCC
Confidence 9998764
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.33 E-value=3.6e-12 Score=108.78 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC--C-cceEEEEeCCHHHHHHHHHHCC-CCeec---Ce
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL--D-ERVAYVCFRSAEDARDAKHSKP-RIILY---DK 143 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~--~-rGqAFVtFr~~EdA~~Al~aln-g~~ff---dK 143 (249)
....+|+|.||+..+++++|++. |++||+| .|.|..+. . +|+|||+|.+.++|..|+..|+ +..++ ++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~----F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQA----FSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHH----HGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHH----HHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 45789999999999999998875 9999999 77776552 2 8999999999999999999994 55455 99
Q ss_pred eeEEeecccc
Q psy4441 144 VAVVDPVYET 153 (249)
Q Consensus 144 pLkVe~a~~~ 153 (249)
+|.|+++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 9999998764
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.32 E-value=2.3e-12 Score=108.19 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce---EEEEeccC-C-cceEEEEeCCHHHHHHHHHHCCCCeecCe---
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL---SIRLSHDL-D-ERVAYVCFRSAEDARDAKHSKPRIILYDK--- 143 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V---sVvV~r~~-~-rGqAFVtFr~~EdA~~Al~alng~~ffdK--- 143 (249)
.+..+|||.||+..+++++|++. |++||.| .|+|..+. + +|+|||.|.+.|+|++|+..||+..|.+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~----F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEI----CDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHH----HHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHH----HHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 46789999999999999998875 9999997 56766543 3 69999999999999999999999999887
Q ss_pred -eeEEeec
Q psy4441 144 -VAVVDPV 150 (249)
Q Consensus 144 -pLkVe~a 150 (249)
|+.|.++
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 5666554
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=5.1e-12 Score=116.66 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCCCCeEEEcC--CCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec---Ce-
Q psy4441 71 PPSYKVLCVSA--LHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY---DK- 143 (249)
Q Consensus 71 ~~e~rTLyVsN--LneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff---dK- 143 (249)
..+.++|||.| |+..+++++|++. |++||+| +|++.. .+|+|||+|++.|||++|+.+|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~----F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPV----LEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHH----HHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHH----HHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 36789999999 5788999998875 9999999 566543 5899999999999999999999999774 33
Q ss_pred -eeEEeecccc
Q psy4441 144 -VAVVDPVYET 153 (249)
Q Consensus 144 -pLkVe~a~~~ 153 (249)
+|-|.++...
T Consensus 89 ~~ly~~~~~~~ 99 (345)
T 3tht_A 89 ITLYLNFVEKV 99 (345)
T ss_dssp EECEEEECSSE
T ss_pred eEEEEEEeecc
Confidence 6777877543
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-11 Score=92.93 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=58.2
Q ss_pred CCeEEEcCCC-------CCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 74 YKVLCVSALH-------PKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 74 ~rTLyVsNLn-------eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
...|.|+-.. +.+++++|++ +|++||+| .|.|.+ ..+|+|||+|++.++|++|+..+++ +.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~----~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLR----LLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHH----HHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHH----HHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566666543 4466777665 59999999 677763 3399999999999999999998666 579999
Q ss_pred EEeeccccc
Q psy4441 146 VVDPVYETH 154 (249)
Q Consensus 146 kVe~a~~~~ 154 (249)
+|+++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988754
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8.6e-11 Score=97.54 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred CeEEEcCC----CCCCChHHHHHHHHHHhcccCce-EEEEeccCC----cceEEEEeCC----HHH----HHHHHH--HC
Q psy4441 75 KVLCVSAL----HPKASDELIKDTLYREYKKFGDL-SIRLSHDLD----ERVAYVCFRS----AED----ARDAKH--SK 135 (249)
Q Consensus 75 rTLyVsNL----neKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~----rGqAFVtFr~----~Ed----A~~Al~--al 135 (249)
..|+|.|| +..+++++|++. |++||+| ++.+..+.. +|+|||.|.+ +++ |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~----Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNY----FKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHH----HHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHH----HHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 57999999 999999999985 9999999 777775543 9999999996 444 788887 78
Q ss_pred CCCeecCeeeEEeecccc
Q psy4441 136 PRIILYDKVAVVDPVYET 153 (249)
Q Consensus 136 ng~~ffdKpLkVe~a~~~ 153 (249)
++..|.|+.|+|++-.+.
T Consensus 79 ng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp TCEEETTEEEEEEECCTT
T ss_pred cCCeecCcEEEEEECccc
Confidence 999999999999986553
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.7e-10 Score=88.73 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCC----CCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 70 RPPSYKVLCVSALH----PKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 70 g~~e~rTLyVsNLn----eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
|| +.-||.|+.++ ...-+++|-..|...|++||+| +|++.. +.|||+|++.++|.+|+. |+|+.+.|+.
T Consensus 4 GP-pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GS-SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CC-SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CC-CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 44 55688888776 2356888999999999999999 788875 449999999999999997 9999999999
Q ss_pred eEEeeccc
Q psy4441 145 AVVDPVYE 152 (249)
Q Consensus 145 LkVe~a~~ 152 (249)
|+|+++..
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999764
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.08 E-value=2.9e-10 Score=94.56 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCC-CCCChHHHHHHHHHHhcccCce-EEEEeccC-------C-cceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 72 PSYKVLCVSALH-PKASDELIKDTLYREYKKFGDL-SIRLSHDL-------D-ERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 72 ~e~rTLyVsNLn-eKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-------~-rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
.....+.+.|+- ...-++++++.|+.+|++||+| +|+|..+. . +|++||.|.+.++|++|+.+|||..|.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 455677777754 3344567889999999999999 78776331 2 799999999999999999999999999
Q ss_pred CeeeEEeecccc
Q psy4441 142 DKVAVVDPVYET 153 (249)
Q Consensus 142 dKpLkVe~a~~~ 153 (249)
|++|.|+++.+.
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999998653
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3.2e-09 Score=85.61 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCC-CChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCC-HHHHHHHHHHC--CCCeecCeeeE
Q psy4441 72 PSYKVLCVSALHPK-ASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRS-AEDARDAKHSK--PRIILYDKVAV 146 (249)
Q Consensus 72 ~e~rTLyVsNLneK-iS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~-~EdA~~Al~al--ng~~ffdKpLk 146 (249)
..+-.|+|.||+.. ++.++||+. |++||+| .|.+..... .|||.|.+ .++|++|+.++ +++.|.++.++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~----F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHIL----FSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHH----TCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHH----HHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 67889999999999 999999986 9999999 677765443 69999999 89999999999 58899999999
Q ss_pred Eeecc
Q psy4441 147 VDPVY 151 (249)
Q Consensus 147 Ve~a~ 151 (249)
++.+.
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.8e-09 Score=84.85 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCCCCCCeEEEcCCCC-----CCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeec
Q psy4441 68 SDRPPSYKVLCVSALHP-----KASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILY 141 (249)
Q Consensus 68 Reg~~e~rTLyVsNLne-----KiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ff 141 (249)
..|| +.-||.|+.+++ ..-+++|-..|...|++||+| +|++.. ..+||+|.+.++|.+|+. |+++.+.
T Consensus 10 ~~GP-pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~----d~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 10 FQGP-LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ----GQMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCC-TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET----TEEEEECSCSHHHHHHHH-GGGSEET
T ss_pred ecCC-CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec----CcEEEEEcChHHHHHHHh-cCCeeeC
Confidence 3455 667999998874 256778888899999999999 888885 339999999999999997 9999999
Q ss_pred CeeeEEee
Q psy4441 142 DKVAVVDP 149 (249)
Q Consensus 142 dKpLkVe~ 149 (249)
|+.|+|++
T Consensus 84 Gr~L~V~~ 91 (95)
T 1ufw_A 84 GRAVKISG 91 (95)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEec
Confidence 99999986
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.7e-06 Score=68.92 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCC-ChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 74 YKVLCVSALHPKA-SDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 74 ~rTLyVsNLneKi-S~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
-.||.|+||+..+ ..+++|+.+..+|.+|+++ +....+.-.+ ..|+|.++|+|.+|...|.++.|.|+.|+|-++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR--irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKR--VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTE--EEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceE--EEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999999877 8899999999999999999 7666655433 6899999999999999999999999999999887
Q ss_pred c
Q psy4441 152 E 152 (249)
Q Consensus 152 ~ 152 (249)
.
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1e-05 Score=65.79 Aligned_cols=80 Identities=23% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHH-hcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYRE-YKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~e-FsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~ 149 (249)
+..+||.+-||++++++..|+..+... +..=|+| .|++. .+.+=|+|.|++...|-+|..+|+|..|.|+.|+|-.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~--pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV--SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE--TTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe--cCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 567999999999999999999865442 3333999 55554 2366799999999999999999999999999999987
Q ss_pred cccc
Q psy4441 150 VYET 153 (249)
Q Consensus 150 a~~~ 153 (249)
+.+-
T Consensus 97 v~eL 100 (117)
T 2l9w_A 97 INDM 100 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.0002 Score=57.16 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEcCCCCCCChHHHHHHHHHHhcc----c-Cce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC
Q psy4441 69 DRPPSYKVLCVSALHPKASDELIKDTLYREYKK----F-GDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD 142 (249)
Q Consensus 69 eg~~e~rTLyVsNLneKiS~edLKe~Ly~eFsK----F-G~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd 142 (249)
.|..-+++|.|.||++.++++.|+ || |.+ - |+| +|.... +.|+|+|.+.+.|++-| +...-.|.+
T Consensus 3 ~~~~~~~~I~V~~lPp~~~~e~L~--LY--FEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL-~k~~H~L~~ 73 (104)
T 2dhx_A 3 SGSSGGVAVEVRGLPPAVPDELLT--LY--FENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVL-AQADHELHG 73 (104)
T ss_dssp CSCCCCCEEEEESCCTTSCHHHHH--HH--HHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHH-TCSCCBSSS
T ss_pred CCccCccEEEEECCCCCCChhHhe--EE--EeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHh-cCCcceecC
Confidence 345678999999999999988666 33 444 3 788 555543 88999999999998877 443455899
Q ss_pred eeeEEeecccc
Q psy4441 143 KVAVVDPVYET 153 (249)
Q Consensus 143 KpLkVe~a~~~ 153 (249)
.+|.|.+.++.
T Consensus 74 ~~LsV~P~~~~ 84 (104)
T 2dhx_A 74 AQLSLRPAPPR 84 (104)
T ss_dssp SBCEEEECCCC
T ss_pred eEEEEEcCCCC
Confidence 99999886664
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.56 E-value=0.00013 Score=57.95 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=48.9
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
.-...|+| +++...+-.||.+ +|+.||-|.|.+.- .-.|||+|.+.+.|.+|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~----lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQ----LFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHH----HHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHH----HhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 34567888 9999999999776 59999999999886 5679999999999999998753
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.36 E-value=0.00017 Score=57.37 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=46.9
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
..|+| +++...+-.||.+ +|+.||-|.|.+.- .-.|||+|.+.+.|.+|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~----lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQ----LFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHH----HTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHH----HHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45777 9999999999776 59999999999986 5679999999999999998753
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.37 E-value=0.012 Score=47.51 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecC-eeeEEee
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYD-KVAVVDP 149 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffd-KpLkVe~ 149 (249)
.....|.|-.++.......|+ +|++||+| .... ......-.|.|++..+|+.|| ..||.+|.+ -.|=|.+
T Consensus 22 ~~~~wVtVFGFp~~~~~~VL~-----~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASASYILL-----QFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGGHHHHHH-----HHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHH-----HHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 456789999999765555544 69999999 3333 334677899999999999999 668887774 6677777
Q ss_pred cc
Q psy4441 150 VY 151 (249)
Q Consensus 150 a~ 151 (249)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.28 E-value=0.0025 Score=49.75 Aligned_cols=42 Identities=10% Similarity=-0.174 Sum_probs=30.1
Q ss_pred EEEEeccCC--cceEEEEeCCHHHHHHHHHHCCCCeecCeeeEE
Q psy4441 106 SIRLSHDLD--ERVAYVCFRSAEDARDAKHSKPRIILYDKVAVV 147 (249)
Q Consensus 106 sVvV~r~~~--rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkV 147 (249)
++.|..+.. +|+|||+|.+.++|++|+..+++....+..+.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~ 45 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY 45 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccc
Confidence 445554444 999999999999999999887754334434333
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.85 E-value=0.0034 Score=48.91 Aligned_cols=38 Identities=11% Similarity=-0.161 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHC-CCCeecCeeeEEeecccc
Q psy4441 115 ERVAYVCFRSAEDARDAKHSK-PRIILYDKVAVVDPVYET 153 (249)
Q Consensus 115 rGqAFVtFr~~EdA~~Al~al-ng~~ffdKpLkVe~a~~~ 153 (249)
+|+++|.|.+.++|++|+.++ |+..|.| +|.|+.+...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 999999999999999999999 9999999 9999987653
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.73 E-value=0.0063 Score=47.73 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHh----ccc--CceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCe---
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREY----KKF--GDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDK--- 143 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eF----sKF--G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdK--- 143 (249)
...-|-|++|++.++++++.+.|-.++ ..| |+++. +...-.-|||.|++.|+..+-....+|..|.|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~---~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL---YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS---CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC---CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 345688999999999999887764332 223 44421 111145699999999999999999999998887
Q ss_pred --eeEEeec
Q psy4441 144 --VAVVDPV 150 (249)
Q Consensus 144 --pLkVe~a 150 (249)
+..||.|
T Consensus 85 ~~~a~VE~A 93 (97)
T 2l08_A 85 EYPAVVEFA 93 (97)
T ss_dssp EEEEEEEEC
T ss_pred EeeeEEEec
Confidence 4445554
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.44 E-value=0.045 Score=42.04 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=49.4
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCceE-EEE-ecc----CC-cceEEEEeCCHHHHHHHHHHCCCCeecCee
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDLS-IRL-SHD----LD-ERVAYVCFRSAEDARDAKHSKPRIILYDKV 144 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~Vs-VvV-~r~----~~-rGqAFVtFr~~EdA~~Al~alng~~ffdKp 144 (249)
-|-|++|+..++++++.+.|-.+ ++++ ..- ..+ .. -.-|||.|++.|++.+-...++|..|.|..
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 47899999999999999886543 4452 111 111 11 567999999999999999999999888863
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.23 E-value=0.025 Score=46.65 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEE--ec-----------cC------CcceEEEEeCCHHHHHHHHHH
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRL--SH-----------DL------DERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV--~r-----------~~------~rGqAFVtFr~~EdA~~Al~a 134 (249)
...|-|-..++.++...|. +|++||+|...+ .+ .. ....-.|+|++..+|..|| .
T Consensus 7 e~~VtVFGFp~~~~~~VI~-----~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~ 80 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVIA-----YFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-L 80 (132)
T ss_dssp -CEEEEECCCGGGHHHHHH-----HHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-T
T ss_pred ceEEEEEecCHHHHHHHHH-----HHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-H
Confidence 3457777887666555555 699999993222 11 00 1445689999999999999 6
Q ss_pred CCCCeecCeeeEEeeccc
Q psy4441 135 KPRIILYDKVAVVDPVYE 152 (249)
Q Consensus 135 lng~~ffdKpLkVe~a~~ 152 (249)
.||.+|.|.-|=|.+...
T Consensus 81 ~NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 81 ENGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTTCEETTEECEEEECCH
T ss_pred hCCeEeCcEEEEEEECCH
Confidence 788889998888887643
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.20 E-value=0.038 Score=53.00 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=46.4
Q ss_pred CCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 74 YKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 74 ~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
...|+|. ++.+.+..+|.+ +|+.||.|.|.+.- ...|||+|.+.|+|++|+.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~----~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQ----LFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHH----HGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHH----HHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHHh
Confidence 4578887 888888877766 49999999887764 56699999999999999998753
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.15 E-value=0.03 Score=53.91 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
..++|.|+ .+.++++++|-+. |++||+|.-++.-+.+.-+|.|.|.+.++|..++.+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y----~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKY----LSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHH----HGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHH----HHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 46889998 7888999997765 999999954444444467999999999999977644
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=74.38 E-value=6.4 Score=27.54 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=43.6
Q ss_pred eEEEcC-CCCCCChHHHHHHHHHHhc-ccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeecc
Q psy4441 76 VLCVSA-LHPKASDELIKDTLYREYK-KFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPVY 151 (249)
Q Consensus 76 TLyVsN-LneKiS~edLKe~Ly~eFs-KFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a~ 151 (249)
||+|+. -.+++...+|-..|-.+-. .=.+| .|.|. ..++||.-.... |++++..|++..+.|+.++|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 556532 2355777787777554433 11234 45554 568999987765 888999999998999999998764
No 223
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.89 E-value=29 Score=26.27 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHCC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~aln 136 (249)
..-|+-..+.+++..+||+.+..+|.- +| .|....... ..-|||++..-++|.+....++
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~V--kV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~kig 84 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNV--KVEKVNTLITPRGEKKAYVKLKPEYSASEVAARLG 84 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTC--CEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHSS
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCC--CceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhhc
Confidence 346777888999999999999999842 34 444443322 5669999999988887655443
No 224
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=54.78 E-value=14 Score=32.71 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=41.7
Q ss_pred EEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeee
Q psy4441 78 CVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVA 145 (249)
Q Consensus 78 yVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpL 145 (249)
.|.||..-.....+-..+....++||+| .+.+. ++-+|+..++|.|++++.. ++..|-+++.
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-----~~~~vvv~~p~~~k~il~~-~~~~f~~rp~ 80 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG-----TKTTVIVGHHQLAKEVLIK-KGKDFSGRPQ 80 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHTT-TTTTTBBCCC
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC-----CCCEEEECCHHHHHHHHHh-CcHhhCCCCC
Confidence 4667654333334556677788999999 66663 4678999999999999854 3333445543
No 225
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=52.37 E-value=31 Score=25.96 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHH
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~ 133 (249)
.-|+-..+.+++..+||+.+..+|.- +| .|....... ..-|||++..-++|-+-..
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~V--kV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDV--TVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCC--CEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--CceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34677788999999999999999952 44 444443333 5579999998887766543
No 226
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=40.51 E-value=61 Score=27.20 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC-CcceEEEEeCCHHHHHHHHHHC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL-DERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-~rGqAFVtFr~~EdA~~Al~al 135 (249)
.-|+-..+.+++..+||+.+..+|.- +| .|...... +.--|||++..-++|.+-...+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~V--kV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ki 153 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDI--DVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCC--CEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCC--cceEEEeeEcCCCceEEEEEECCCCcHHHHHHhc
Confidence 35677788999999999999999952 44 44444322 2556999999887776655444
No 227
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=38.28 E-value=66 Score=26.61 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccC-CcceEEEEeCCHHHHHHHHHHC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDL-DERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~-~rGqAFVtFr~~EdA~~Al~al 135 (249)
..-||-..+.+++..+||+.+..+|.- +| .|...... +.-=|||++..-.||.+-...+
T Consensus 79 ~N~~vF~Vd~~AnK~qIK~AVEklf~V--kV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 79 GNILVFQVSMKANKYQIKKAVKELYEV--DVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHSC--CEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCC--ceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 346777889999999999999999942 34 44444322 2566999999888777754433
No 228
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=37.21 E-value=34 Score=29.71 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHH
Q psy4441 86 ASDELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 86 iS~edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~ 133 (249)
+.-..+.+.+....+|||.| .+.+ -++-.|++.+++.+++.+.
T Consensus 7 ~~g~~~~~~~~~~~~kyG~v~~~~~-----~~~~~vvv~~p~~~~~il~ 50 (456)
T 3mdm_A 7 VGGRVLQDVFLDWAKKYGPVVRVNV-----FHKTSVIVTSPESVKKFLM 50 (456)
T ss_dssp --CCCHHHHHHHHHHHHCSEEEEEE-----TTEEEEEECCHHHHHHHHT
T ss_pred cCcchHHHHHHHHHHHhCCeEEEEe-----CCCCEEEECCHHHHHHHHh
Confidence 33345667777889999999 5554 2467899999999999884
No 229
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=36.60 E-value=70 Score=26.74 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHC
Q psy4441 76 VLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 76 TLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~al 135 (249)
.-||-..+.+++..+||+.+..+|.- +| .|....... .-=|||++..-.+|.+-...+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~V--kV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDI--QAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTC--CEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC--cceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 46777889999999999999999942 33 444443333 567999999888887755433
No 230
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.59 E-value=69 Score=26.77 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCChHHHHHHHHHHhcccCce-EEEEeccCC-cceEEEEeCCHHHHHHHHHHC
Q psy4441 75 KVLCVSALHPKASDELIKDTLYREYKKFGDL-SIRLSHDLD-ERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 75 rTLyVsNLneKiS~edLKe~Ly~eFsKFG~V-sVvV~r~~~-rGqAFVtFr~~EdA~~Al~al 135 (249)
..-||-..+.+++..+||+.+..+|.- +| .|......+ ..-|||++..-.+|.+-...+
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~V--kV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNV--KVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCC--CEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCC--ceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 346777889999999999999999942 33 444443322 567999999888887754433
No 231
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=36.50 E-value=56 Score=25.70 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcc----------cCce-EEEEeccCCcceEEEE-eCCHHHHHHHHHH
Q psy4441 89 ELIKDTLYREYKK----------FGDL-SIRLSHDLDERVAYVC-FRSAEDARDAKHS 134 (249)
Q Consensus 89 edLKe~Ly~eFsK----------FG~V-sVvV~r~~~rGqAFVt-Fr~~EdA~~Al~a 134 (249)
+.|++.|-.++.+ +=.| .|.|..+...-..||+ |-+.++.++++.+
T Consensus 20 ~~i~~~ls~il~~~~~dp~l~~~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~ 77 (129)
T 2e7g_A 20 GLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAV 77 (129)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCccccCCeeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHH
Confidence 4566666666654 3355 5777777766677777 5555444444443
No 232
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=33.55 E-value=72 Score=27.83 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 89 ELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 89 edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
..+.+.|..+.+|||+| .+.+. +.-+|++.+++.+++.+..
T Consensus 32 ~~~~~~~~~l~~kYG~i~~~~~g-----~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 32 HKVHLHHVQNFQKYGPIYREKLG-----NVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp GGHHHHHHHHHHHHCSEEEEEET-----TEEEEEECCHHHHHHHHHT
T ss_pred cchhHHHHHHHHHcCceeeccCC-----CCCEEEEcCHHHHHHHHHh
Confidence 35566677789999999 55553 4568999999999998854
No 233
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=31.79 E-value=40 Score=29.19 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHH
Q psy4441 90 LIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 90 dLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~ 133 (249)
.....|..+.+|||+| .+.+. ++=+|+..++|.+++++.
T Consensus 31 ~~~~~~~~~~~kYG~i~~~~~g-----~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 31 NTPYCFDQLRRRFGDVFSLQLA-----WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp SHHHHHHHHHHHHCSEEEEEET-----TEEEEEEEHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCEEEEEEC-----CeeEEEECCHHHHHHHHH
Confidence 4455667788999999 66663 345678889998888874
No 234
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=31.70 E-value=62 Score=28.04 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 89 ELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 89 edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
..+-+.+...+++||+| .+.+ -++-+|+..+++.+++.+..
T Consensus 30 ~~~~~~~~~~~~~yG~v~~~~~-----g~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 30 KNIPKSFTRLAQRFGPVFTLYV-----GSQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TCHHHHHHHHHHHHCSEEEEEE-----TTEEEEEECSHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHhCCEEEEEE-----CCccEEEECCHHHHHHHHhc
Confidence 34556677789999999 5655 35678999999999999855
No 235
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=31.49 E-value=80 Score=23.23 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=39.7
Q ss_pred CCCCCChHHHHHHHHHHhccc------CceEEEEeccCCcceEEEEeCCHHHHHHHHHHC
Q psy4441 82 LHPKASDELIKDTLYREYKKF------GDLSIRLSHDLDERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 82 LneKiS~edLKe~Ly~eFsKF------G~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~al 135 (249)
++..++.++|.+.+..-|+.+ +.+.++..- +.| -||++.+-+|-+-|+..+
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD--EdG-D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD--EDG-DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE--TTT-EEEECCSTTHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc--CCC-CEEEEcCHHHHHHHHHHH
Confidence 567889999999999999977 444444432 244 899999999999999754
No 236
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=29.57 E-value=71 Score=27.95 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=29.9
Q ss_pred HHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCC
Q psy4441 92 KDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKP 136 (249)
Q Consensus 92 Ke~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~aln 136 (249)
.+.|....+|||+| .+.+ -|+-+|+..+++.+++++...+
T Consensus 34 ~~~~~~~~~kYG~i~~~~~-----~~~~~vvv~~~~~i~~il~~~~ 74 (461)
T 3ld6_A 34 IEFLENAYEKYGPVFSFTM-----VGKTFTYLLGSDAAALLFNSKN 74 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEE-----TTEEEEEECSHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCEEEEEE-----CCccEEEEeCHHHHHHHHhCCc
Confidence 44566789999999 6655 3567888999999988875433
No 237
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.51 E-value=45 Score=26.66 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHC
Q psy4441 73 SYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 73 e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~al 135 (249)
..--|.|-|++...-..++--++.+ .|-- .--+.-.|||.|-|++.++..-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrh----lgye---fycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRH----LGYE---FYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHT----TCCC---EEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehh----cCee---EeeeeecCeeEEEecCChHHHHHHHHH
Confidence 3446789999976544444333222 2211 000112899999999999999999763
No 238
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.27 E-value=1.8e+02 Score=21.37 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhcccC-ce-EEEEeccCCcceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 88 DELIKDTLYREYKKFG-DL-SIRLSHDLDERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 88 ~edLKe~Ly~eFsKFG-~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
++.+++.|......-| +| +|.|.. .-.|+-||.+...++...+++...++
T Consensus 22 E~~V~~~L~~~~~~~~l~i~~v~vP~-~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 22 EKNIAGLMASRAEKEQLDVYSILASE-SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECT-TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec-ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5677777777654433 25 444442 23999999999999999999888876
No 239
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.90 E-value=1.1e+02 Score=24.47 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 87 SDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 87 S~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
|.++||+++.++.+||..-.|+ |+-.+.|=|++|++-
T Consensus 34 spqelkdsieelvkkynativv-----------vvvddkewaekairf 70 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIVV-----------VVVDDKEWAEKAIRF 70 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEE-----------EECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCeEEE-----------EEEccHHHHHHHHHH
Confidence 5789999999999999543222 345677888888854
No 240
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=25.19 E-value=1.1e+02 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 89 ELIKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 89 edLKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
..+-+.|..+.++||+| .+.+. ++-.|++.+++.+++.+..
T Consensus 48 ~~~~~~~~~l~~~YG~i~~~~~g-----~~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 48 KKQHDTLAEYHKKYGQIFRMKLG-----SFDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp GGHHHHHHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHcCCEEEEccC-----CCCEEEEcCHHHHHHHHHh
Confidence 45566677789999999 55553 4568899999999888755
No 241
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.52 E-value=1.7e+02 Score=22.59 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCC
Q psy4441 86 ASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPR 137 (249)
Q Consensus 86 iS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng 137 (249)
.+.+.|++.+..+|.......+.|.-..+.| =.|+|.+-++-+.|+..++.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedG-DlItiSsDeEL~~Al~~~~~ 92 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERG-DLVAFSSDEELTMAMSYVKD 92 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTC-CEEEECSHHHHHHHHHHCCS
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCC-CEEEecCHHHHHHHHHhcCC
Confidence 4799999999999987754333343222222 47999999999999998774
No 242
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.07 E-value=1.3e+02 Score=25.50 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHh--cccCceEEEEeccCC--cceEEEEeCCHH-HHHHHHH
Q psy4441 86 ASDELIKDTLYREY--KKFGDLSIRLSHDLD--ERVAYVCFRSAE-DARDAKH 133 (249)
Q Consensus 86 iS~edLKe~Ly~eF--sKFG~VsVvV~r~~~--rGqAFVtFr~~E-dA~~Al~ 133 (249)
.+.++|++ +| +.|..+.|+..-... .|+|.|.|.+-- -=.+|++
T Consensus 33 ~s~~~l~~----~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRD----EYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHH----HHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHH----HHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 34566665 36 999888777665444 899999997643 3355553
No 243
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=22.88 E-value=1.1e+02 Score=26.52 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHH
Q psy4441 91 IKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHS 134 (249)
Q Consensus 91 LKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~a 134 (249)
..+.+...+++||+| .+.+ -++-+|+..+++.+++.+..
T Consensus 35 ~~~~~~~~~~~yG~i~~~~~-----g~~~~vvv~dp~~i~~il~~ 74 (485)
T 3nxu_A 35 FCMFDMECHKKYGKVWGFYD-----GQQPVLAITDPDMIKTVLVK 74 (485)
T ss_dssp HHHHHHHHHHHHCSEEEEEE-----TTEEEEEECCHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCeEEEEe-----CCCCEEEECCHHHHHHHHhc
Confidence 445566788999999 5554 34568999999999999854
No 244
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=22.68 E-value=1.2e+02 Score=20.80 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCCCeEEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCC-cceEEEEeCCHHHHHHHHHHCCCC
Q psy4441 72 PSYKVLCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLD-ERVAYVCFRSAEDARDAKHSKPRI 138 (249)
Q Consensus 72 ~e~rTLyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~-rGqAFVtFr~~EdA~~Al~alng~ 138 (249)
...-.|.|-.+..+.+.+.+.+.|... | +...|..... -++-+--|.+.++|++++..|...
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~----g-~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~ 69 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAK----G-FDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNA 69 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHH----T-CCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhC----C-CCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHc
Confidence 345678888888888888888876655 4 2222223333 666677899999999999887653
No 245
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.42 E-value=88 Score=24.81 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=47.9
Q ss_pred EEEcCCCCCCChHHHHHHHHHHhcccCceEEEEeccCCcceEEEEeCCHHHHHHHHHHCCCCeecCeeeEEeec
Q psy4441 77 LCVSALHPKASDELIKDTLYREYKKFGDLSIRLSHDLDERVAYVCFRSAEDARDAKHSKPRIILYDKVAVVDPV 150 (249)
Q Consensus 77 LyVsNLneKiS~edLKe~Ly~eFsKFG~VsVvV~r~~~rGqAFVtFr~~EdA~~Al~alng~~ffdKpLkVe~a 150 (249)
=.|-.++.-++.++|...+...|++ .+++.-. +.+ +.|-.++.||-.+|+..++.. ---+.|+|-++
T Consensus 19 kRIi~f~RPv~f~eL~~Kv~~~fGq--~ldL~y~--n~E--llIpl~sQeDLDkaIellDrs-s~~kSLrIlL~ 85 (103)
T 2cu1_A 19 KRILQFPRPVKLEDLRSKAKIAFGQ--SMDLHYT--NNE--LVIPLTTQDDLDKAVELLDRS-IHMKSLKILLV 85 (103)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHSS--CEEEEEC--SSS--SCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEE
T ss_pred EEEEeccCCccHHHHHHHHHHHhCC--eeeEEEe--cce--EEEeccCHHHHHHHHHHHccC-CcccceEEEEe
Confidence 3455667789999999999988887 3333333 333 789999999999999886655 34456666443
No 246
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=22.18 E-value=1.1e+02 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHH
Q psy4441 91 IKDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKH 133 (249)
Q Consensus 91 LKe~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~ 133 (249)
..+.+....++||.| .+.+. ++-+|+..+++.+++.+.
T Consensus 30 ~~~~~~~~~~~yG~i~~~~~g-----~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 30 AHLSFARLARRYGDVFQIRLG-----SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp HHHHHHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCEEEEEEC-----CccEEEECCHHHHHHHHH
Confidence 445677788999999 55553 567899999999999884
No 247
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=21.73 E-value=1.1e+02 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHhcccCce-EEEEeccCCcceEEEEeCCHHHHHHHHHHC
Q psy4441 92 KDTLYREYKKFGDL-SIRLSHDLDERVAYVCFRSAEDARDAKHSK 135 (249)
Q Consensus 92 Ke~Ly~eFsKFG~V-sVvV~r~~~rGqAFVtFr~~EdA~~Al~al 135 (249)
...|....++||+| .+.+. |+-+|+..+.+.|++++...
T Consensus 34 ~~~~~~~~~~yG~v~~l~l~-----g~~~vvv~~~~~~~~il~~~ 73 (461)
T 3i3k_A 34 IEFLENAYEKYGPVFSFTMV-----GKTFTYLLGSDAAALLFNSK 73 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEET-----TEEEEEECSHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCEEEEEec-----CceEEEEeChHHHHHHHhcc
Confidence 34455678999999 66653 56788899999998887543
Done!